Citrus Sinensis ID: 004232

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760------
Protein Sequence
MYMGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccccccccccccccccccccccccccHHHHcccccccEEEEEcccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccHHHHccccccccEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccEEEEccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHccccccccccEEEEEccccccccccccEEEEEEcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHccccccccccccccccccccEEEEEEcccccccccccHHHccccccEEEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccccccccccEEEccccccccccccHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHcccccccccccccccccHccEccHHHHHHHHHccccccEEEcccccEEEEEEcccccEEEEEEcccccccccccHEEEHHHHcccccccHHHHEEEEEcccccccccccccEEEEEccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEccccHHHHHHHcHHHHHHHccccccccccHHEEEEEcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHEEccHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MYMGQGNLLLLLCLSwslfplgthqlqsSQTQVLLQLRKHLEYPKQLEIWINHGadfcyissstqvnitcqdNFITELKiigdkpsnvgnfdgfasanaslsenfsidSFVTTLARLTSLRVLSLVSlgiwgslpdkIHRLYSLEYldlssnflfgsvppkiSTMVKLQTLilddnffnntipnwfdslpsltflsmrnnklagpfpssiqristlsdldlsknaisgslpdlsslgslnvlnlsdnkldsnlpklprGLVMAFlsnnsfsgeipkqygqlNQLQQLDMSFnalrgmpppaifslpnisdlnlasnkfsgslpknlncggklVFFDisnnkltgglpsclsnesdkRVVKFRGnclssnvqnqhpesycfevrternqagsknvgkLVGIIVGVLVIMVLLAFGFLVVCrrycprctseqhllhksvqdnsatgfssevlTNARYVSEAAklgseglpacrsFTLEELKEAtnnfdmsaimgegsygklykgrlengtsvairclpsskkytvRNLKLRLDLLAKLRHPHLVCLlghcidgggrddyAVNKVFLVYEFMsngnfrthisentpgkvlnwSERLAVLIGVAKAVQFLHtgvipgffnnrvktnNILLNEHRIAKLSDYglsivsedinsvggkqedpnswemtkledDVFSFGFMLLEsvagpsvaarKGQFLQEELDSlnsqegrqrlvdpVVMATSSLESLSIVISIANKcicseswsrpsfEDILWNLQYAAQVQETADNEQRF
Flexible Loop (DISEMBL)
MYMGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNClssnvqnqhpesYCFEVRTErnqagsknvGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHllhksvqdnsatGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGtsvairclpsskkytvrNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDslnsqegrqrLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF
Low Complexity Region (SEG)
MYMGQGNlllllclswslfplGTHqlqssqtqvllqlRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFvttlarltslrvlslvslGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIsgslpdlsslgslnvlnlsdnkldsnlPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNvgklvgiivgvlvimvllAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNlklrldllaklrHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATssleslsivisiANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF
Disordered region (IsUnstruct)
*****GNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA*************************************VL*************LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN**DKRVVKFRGNCLSSNV*****ESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKS********F*SEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN***********WEMTKLEDDVFSFGFMLLESVAGPSV***********************LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ***********
Disordered Region (DISOPRED)
***GQGNLLLLLCLSWSLFPLGTH****SQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQN*************************VGIIVGVLVIMVLLAFGFLVVCRRYCPR****************ATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK*TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL****************
Disordered Region (DISEMBL)
MYMGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF
Disordered Region (DISPRO)
***GQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYMGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	766	2.2.26 [Sep-21-2011]
Q8LFN2	802	Probable inactive leucine	no	no	0.912	0.871	0.425	1e-153
Q9M9S4	728	Probable LRR receptor-lik	no	no	0.859	0.903	0.342	1e-104
C0LGJ9	742	Probable LRR receptor-lik	no	no	0.866	0.894	0.335	4e-96
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.857	0.551	0.286	3e-61
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.776	0.475	0.291	1e-59
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.750	0.460	0.282	5e-58
O49318	1124	Probable leucine-rich rep	no	no	0.779	0.531	0.278	6e-50
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.792	0.585	0.268	8e-50
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.821	0.521	0.264	2e-49
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.821	0.521	0.264	2e-49

>sp|Q8LFN2|Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1

 Score =  544 bits (1401), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 311/731 (42%), Positives = 464/731 (63%), Gaps = 32/731 (4%)

Query: 43  YPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLS 102
           YPK L  W N+  DFC    S  + + C ++ +T+L IIGD  +++            L 
Sbjct: 43  YPKVLNSWNNY-TDFCNSEPSPSLTVVCYEDSVTQLHIIGDNGTHM------------LP 89

Query: 103 ENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI 162
           ++FSI+SFVTTL +L  ++VL+ VSLG+WG LP KI+RL SLE L++SSNFLFG +P ++
Sbjct: 90  KSFSINSFVTTLVKLPDVKVLTFVSLGLWGWLPQKINRLSSLEILNVSSNFLFGPIPHEL 149

Query: 163 STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLS 222
           S++  LQTLILD+N F+  +P+W DSLPSL  LS+R N L G  PSS+  +S L  L L+
Sbjct: 150 SSLATLQTLILDENMFSGELPDWIDSLPSLAVLSLRKNVLNGSLPSSLSSLSGLRVLALA 209

Query: 223 KNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI-PKQYGQL 281
            N  +G+LPDLS L +L VL+L  N      P+L   LV   LS N F   +  ++   L
Sbjct: 210 NNRFNGALPDLSHLTNLQVLDLEGNSFGPLFPRLSNKLVTLILSKNKFRSAVSAEEVSSL 269

Query: 282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNK 341
            QLQ LD+S+N   G  P ++ SLP I+ LN++ NK +G L  NL+C  +L+F D+S+N 
Sbjct: 270 YQLQHLDLSYNTFVGPFPTSLMSLPAITYLNISHNKLTGRLSANLSCNSQLMFVDMSSNL 329

Query: 342 LTGGLPSCLSNES-DKRVVKFRGNCLSSNVQNQHPESYC------FEVRTERNQAGSKNV 394
           LTG LP+CL   S   R V +  NCL++  ++Q P S+C        +  +R    SK V
Sbjct: 330 LTGSLPTCLKPSSGTSRDVVYASNCLATTNEDQRPVSFCSNEALAVGILPQRRNKVSK-V 388

Query: 395 GKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNAR 454
           G  +G+   +L +++L    F+V+ R    +  ++     + +++N++ G++S++L++AR
Sbjct: 389 GIALGVTASILGVLLLAGALFVVLRRLNAKKTVTKSS--PRLIRENASMGYTSKLLSDAR 446

Query: 455 YVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRC 514
           Y+S+  KLG  GLPA R+F+LEEL+ ATNNF+ SA MGEGS G++Y+GRL++G+ VAIRC
Sbjct: 447 YISQTMKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAIRC 506

Query: 515 LPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF 574
           L   K  + +NL   ++L+AKLRH HLV +LGHC +    DD  V+++F V+E++ NG  
Sbjct: 507 LKMKKSCSTQNLMHHIELIAKLRHRHLVSVLGHCFE-CYLDDSTVSRMFFVFEYVPNGEL 565

Query: 575 RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
           RT IS+   G++L W +R++V IGVAK +QFLHTG++PG ++N +K  +ILL+ +  AKL
Sbjct: 566 RTWISDGHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKL 625

Query: 635 SDYGLSIVSEDINSVG--GKQEDPNSWEMTKLED--DVFSFGFMLLESVAG-PSVAARKG 689
           S Y L ++ E +  VG  G +  P      K ED  D++ FG +LLE + G P  A  + 
Sbjct: 626 SSYNLPLLVEGLGKVGQVGSRSGPKGTPSIKDEDKIDIYDFGVILLELIVGRPLRAKSQV 685

Query: 690 QFLQEELD-SLNSQEG-RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
             L+E+L  S+++ +G R+ +VDP V    S +SL  ++ I  +C+  +   RPS ED+L
Sbjct: 686 DVLKEQLQASISADDGARRSMVDPTVHRACSDQSLKTMMEICVRCLLKDPLERPSIEDVL 745

Query: 748 WNLQYAAQVQE 758
           WNLQ+A+QVQE
Sbjct: 746 WNLQFASQVQE 756

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 261/762 (34%), Positives = 393/762 (51%), Gaps = 104/762 (13%)

Query: 25  QLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDK 84
           QL SS+++ LL+++KHL+YP  L  W N   +FCY+ SS    I C +  +TEL + G++
Sbjct: 28  QLISSESRTLLEIQKHLQYPPTLRSWSNW-TNFCYLPSSPSFKILCFNGHVTELTVTGNR 86

Query: 85  PSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSL 144
                           L   FS DS  T L +L++L+ LSLVSLGI              
Sbjct: 87  -------------TVKLPGRFSSDSLFTVLTKLSNLKTLSLVSLGI-------------- 119

Query: 145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG 204
                      G +P +I  +      +   + F                       ++G
Sbjct: 120 ----------SGPLPSQIIRLSSSLQSLNLSSNF-----------------------ISG 146

Query: 205 PFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNL-PKLPRGLVMA 263
             P  I  +  L  L L+ N  +GS+PDL  L +L  LNL  NKL   + P L   L+  
Sbjct: 147 NIPKEISSLKNLRSLVLANNLFNGSVPDLRGLSNLQELNLGGNKLGPEVVPSLASNLITI 206

Query: 264 FLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
            L NNSF  +IP+Q  +LN+LQ LD+S N   G  P  + SLP++ +L+LA N  SGSLP
Sbjct: 207 SLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLP 266

Query: 324 KNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN----VQNQHPESYC 379
            +  C  KL   D+S N LTG LPSC S++  + V+ F  NCLS N     + Q P ++C
Sbjct: 267 NSSLCNSKLRILDVSRNLLTGKLPSCFSSK-KQTVLLFTFNCLSINGSPSAKYQRPVTFC 325

Query: 380 ------------FEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCT 427
                        + + +  +     +   + I + + VI+V      LV+ R    R  
Sbjct: 326 ENEAKQAVAAVKSDTKDKERKEEDTGIELGLVIGIIIGVILVSAVLAGLVLVRMRKSRSK 385

Query: 428 SE----QHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATN 483
            E     ++   +V  N+    +S+ + + R V +  +    GL   R F+LEEL+EATN
Sbjct: 386 EEPLEANNVDQVTVCSNTTRSTTSKTVPDLRRVPQTMRSAVIGLSPYRVFSLEELEEATN 445

Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
           NFD   + GE    +LYKG L  G +V +RC+   +K + +NL  ++++L+KLRH HLV 
Sbjct: 446 NFDAENLCGE----QLYKGCLREGIAVTVRCIKLKQKNSTQNLAQQMEVLSKLRHMHLVS 501

Query: 544 LLGHCIDGGGRDD--YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           +LGHCI G  +D   YA + +F+V E++SNG+ R ++++    +VL W +R+++ IGVA+
Sbjct: 502 VLGHCI-GTYQDHHPYAGSTIFIVQEYISNGSLRDYLTDWRKKEVLKWPQRMSIAIGVAR 560

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEM 661
            +QFLHTGV PG F N ++  N+LL+E    KLS Y + + S+    VG   E P++ + 
Sbjct: 561 GIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYSIPLPSK----VGA--ESPSNEDG 614

Query: 662 TKLEDDVFSFGFMLLESVAGPSVAARKGQF----LQEELDSLNSQEGRQR-LVDPVVMAT 716
            K  +DV+ FG +L++ + G  +AA   +     LQ E +SL  +    R L DP V  T
Sbjct: 615 EK--EDVYQFGVILIQIITGKVIAAASSELGSLKLQLE-NSLRDEPSVLRSLADPCVRGT 671

Query: 717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE 758
            + ESL   +  A  C+C +   RPS ED++WNLQY  QVQ+
Sbjct: 672 YAYESLRTTVEFAINCLCEDQRKRPSIEDVVWNLQYTIQVQQ 713

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1

 Score =  352 bits (904), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 257/767 (33%), Positives = 389/767 (50%), Gaps = 103/767 (13%)

Query: 25  QLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDK 84
           Q+ SS++Q LL+++K L+YP+ L+ W +   +FC+I  S  + I C    +TEL + G++
Sbjct: 28  QVASSESQTLLEIQKQLQYPQVLQSWTD-TTNFCHIRPSPSLRIICLHGHVTELTVTGNR 86

Query: 85  PSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSL-PDKIHRLY- 142
            S +                 S     T L +L+SL+ LSL SLGI GSL P  I +L  
Sbjct: 87  TSKLSG---------------SFHKLFTLLTQLSSLKTLSLTSLGISGSLSPKIITKLSP 131

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
           SLE L+LSSN                        F +  IP    SL +L  L +R+N  
Sbjct: 132 SLESLNLSSN------------------------FISGKIPEEIVSLKNLKSLVLRDNMF 167

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVM 262
            G           +SD             DL  L +L  L+L  NKL   +P LP  L  
Sbjct: 168 WG----------FVSD-------------DLRGLSNLQELDLGGNKLGPEVPSLPSKLTT 204

Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL 322
             L NNSF  +IP+Q  +LN LQ LD+S N   G  P  +FS+P++  L+L  N  SGSL
Sbjct: 205 VSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQNLLSGSL 264

Query: 323 PKNLNCGGKLVFFDISNNKLTGGLPSCLSNES-DKRVVKFRGNCLS----SNVQNQHPES 377
           P +     K++  D+S+N LTG LPSC S++S   + V F  NCLS     N + Q P S
Sbjct: 265 PNSSCTSSKIITLDVSHNLLTGKLPSCYSSKSFSNQTVLFSFNCLSLIGTPNAKYQRPLS 324

Query: 378 YC------------FEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCP- 424
           +C                 +++ A  K    ++ II  +++  +L+    + + RR    
Sbjct: 325 FCQNQASKAIAVEPIPKAKDKDSARIKLGLVILIIIGVIILAAILVLLVLIALKRRRSRS 384

Query: 425 --------RCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLE 476
                      +E+H   K V   S T  SS+ L ++R V +  +    GLP  R F+LE
Sbjct: 385 EDDPFEVNNSNNERHASDK-VSVCSTTTASSKSLPDSRRVPQTMRSAVIGLPPYRVFSLE 443

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL 536
           EL+EATN+FD +++  E    +LY+G L  G  V +R +   +K   ++L  ++++L+KL
Sbjct: 444 ELEEATNDFDAASLFCE----QLYRGCLREGIPVTVRVIKLKQKSLPQSLAQQMEVLSKL 499

Query: 537 RHPHLVCLLGHCIDGG-GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
           RH HLV +LGH I      + +A + +F+V E++S+G+ R  ++     +VL W +R+A+
Sbjct: 500 RHMHLVSVLGHSIASNQDHNQHAGHTIFIVQEYISSGSLRDFLTNCRKKEVLKWPQRMAI 559

Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED 655
            IGVA+ +QFLH GV PG F N +K  NI+L+E    K+S Y + + S+ +     + + 
Sbjct: 560 AIGVARGIQFLHMGVAPGIFGNNLKIENIMLDETLTVKISGYTIPLPSK-VGEERPQAKK 618

Query: 656 PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF----LQEELDSLNSQEGRQRLVDP 711
           P S E  + ++DV+ FG +LL+ + G  VAA   +     LQ E    +       L DP
Sbjct: 619 PRSNE-DREKEDVYQFGVILLQIITGKVVAAGSSEMGSLKLQLENGLRDEPSVLSSLADP 677

Query: 712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE 758
            V  + + ESL   +  A  C+C +   RPS ED++WNLQY  QVQ+
Sbjct: 678 SVKGSYAYESLRTTVEFAINCLCEDQSKRPSIEDVVWNLQYTIQVQQ 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  237 bits (604), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 214/748 (28%), Positives = 360/748 (48%), Gaps = 91/748 (12%)

Query: 79   KIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI 138
            ++ G  P+ +GN          LS+N         + +LTSL VL+L +    G +P ++
Sbjct: 459  RLEGYLPAEIGNAASLK--RLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVEL 516

Query: 139  HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPN----WFD--SLPSL 192
                SL  LDL SN L G +P KI+ + +LQ L+L  N  + +IP+    +F    +P L
Sbjct: 517  GDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDL 576

Query: 193  TFLS------MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLS 245
            +FL       +  N+L+GP P  +     L ++ LS N +SG +P  LS L +L +L+LS
Sbjct: 577  SFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLS 636

Query: 246  DNKLDSNLPK-LPRGLVMAFL--SNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
             N L  ++PK +   L +  L  +NN  +G IP+ +G L  L +L+++ N L G  P ++
Sbjct: 637  GNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASL 696

Query: 303  FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
             +L  ++ ++L+ N  SG L   L+   KLV   I  NK TG +PS L N +    +   
Sbjct: 697  GNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVS 756

Query: 363  GNCLS--------------------SNVQNQHPESYCFEVRTERNQAGSKNV-GKLVGI- 400
             N LS                    +N++ + P     +  ++   +G+K + G++VG  
Sbjct: 757  ENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSD 816

Query: 401  -------------IVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSS 447
                         I G+++   ++ F F+   RR+      +Q    + ++++   GF  
Sbjct: 817  CKIEGTKLRSAWGIAGLMLGFTIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRLKGFVD 876

Query: 448  E---VLTNARY---VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYK 501
            +    L+ +R    +S    +  + L   R   L ++ EAT++F    I+G+G +G +YK
Sbjct: 877  QNLYFLSGSRSREPLSINIAMFEQPLLKVR---LGDIVEATDHFSKKNIIGDGGFGTVYK 933

Query: 502  GRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK 561
              L    +VA++ L  +K    R     ++ L K++HP+LV LLG+C        ++  K
Sbjct: 934  ACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYC-------SFSEEK 986

Query: 562  VFLVYEFMSNGNFRTHISENTPG--KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV 619
            + LVYE+M NG+   H   N  G  +VL+WS+RL + +G A+ + FLH G IP   +  +
Sbjct: 987  L-LVYEYMVNGSL-DHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHHGFIPHIIHRDI 1044

Query: 620  KTNNILLNEHRIAKLSDYGL--------SIVSEDINSVGG--KQEDPNSWEMTKLEDDVF 669
            K +NILL+     K++D+GL        S VS  I    G    E   S   T  + DV+
Sbjct: 1045 KASNILLDGDFEPKVADFGLARLISACESHVSTVIAGTFGYIPPEYGQSARATT-KGDVY 1103

Query: 670  SFGFMLLESVAGPSVA------ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLS 723
            SFG +LLE V G          +  G  +   +  +N Q     ++DP++++ +   S  
Sbjct: 1104 SFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKIN-QGKAVDVIDPLLVSVALKNSQL 1162

Query: 724  IVISIANKCICSESWSRPSFEDILWNLQ 751
             ++ IA  C+      RP+  D+L  L+
Sbjct: 1163 RLLQIAMLCLAETPAKRPNMLDVLKALK 1190

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  232 bits (591), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 193/663 (29%), Positives = 317/663 (47%), Gaps = 68/663 (10%)

Query: 114  LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
            L + T+L  L L      G +P    ++  L  LD+S N L G +P ++    KL  + L
Sbjct: 596  LGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDL 655

Query: 174  DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-D 232
            ++N+ +  IP W   LP L  L + +NK  G  P+ I  ++ +  L L  N+++GS+P +
Sbjct: 656  NNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQE 715

Query: 233  LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF---LSNNSFSGEIPKQYGQLNQLQQ-LD 288
            + +L +LN LNL +N+L   LP     L   F   LS N+ +GEIP + GQL  LQ  LD
Sbjct: 716  IGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALD 775

Query: 289  MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS 348
            +S+N   G  P  I +LP +  L+L+ N+  G +P  +     L + ++S N L G L  
Sbjct: 776  LSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK 835

Query: 349  CLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKL---VGIIVGVL 405
              S       V   G C S       P S+C       N+AGSKN   L     +I+  +
Sbjct: 836  QFSRWQADAFVGNAGLCGS-------PLSHC-------NRAGSKNQRSLSPKTVVIISAI 881

Query: 406  VIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSE 465
              +  +A   LV+   +      + H L K V+  ++   S+   + A   S        
Sbjct: 882  SSLAAIALMVLVIILFF-----KQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGG----- 931

Query: 466  GLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAI-RCLPSSKKYTVR 524
               A      +++ EAT+  +   ++G G  GK+YK  L+NG ++A+ + L      + +
Sbjct: 932  ---AKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNK 988

Query: 525  NLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT--HISENT 582
            +    +  L  +RH HLV L+G+C         A     L+YE+M+NG+     H +ENT
Sbjct: 989  SFNREVKTLGTIRHRHLVKLMGYC------SSKADGLNLLIYEYMANGSVWDWLHANENT 1042

Query: 583  PGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
              K VL W  RL + +G+A+ V++LH   +P   +  +K++N+LL+ +  A L D+GL+ 
Sbjct: 1043 KKKEVLGWETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAK 1102

Query: 642  V---SEDINSVGGKQ----------EDPNSWEMTKLEDDVFSFGFMLLESVAG--PSVAA 686
            +   + D N+               E   S + T+ + DV+S G +L+E V G  P+ A 
Sbjct: 1103 ILTGNYDTNTESNTMFAGSYGYIAPEYAYSLKATE-KSDVYSMGIVLMEIVTGKMPTEAM 1161

Query: 687  RKGQ-----FLQEELDSLNSQEGRQRLVDPVV--MATSSLESLSIVISIANKCICSESWS 739
               +     +++  LD+    E R++L+D  +  +     E+   V+ IA +C  S    
Sbjct: 1162 FDEETDMVRWVETVLDTPPGSEAREKLIDSELKSLLPCEEEAAYQVLEIALQCTKSYPQE 1221

Query: 740  RPS 742
            RPS
Sbjct: 1222 RPS 1224

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 184/651 (28%), Positives = 317/651 (48%), Gaps = 76/651 (11%)

Query: 132  GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS 191
            G +P  + ++  L  LD+SSN L G++P ++    KL  + L++NF +  IP W   L  
Sbjct: 613  GKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQ 672

Query: 192  LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLD 250
            L  L + +N+     P+ +   + L  L L  N+++GS+P ++ +LG+LNVLNL  N+  
Sbjct: 673  LGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFS 732

Query: 251  SNLPKLPRGLVMAF---LSNNSFSGEIPKQYGQLNQLQQ-LDMSFNALRGMPPPAIFSLP 306
             +LP+    L   +   LS NS +GEIP + GQL  LQ  LD+S+N   G  P  I +L 
Sbjct: 733  GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792

Query: 307  NISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCL 366
             +  L+L+ N+ +G +P ++     L + ++S N L G L    S       +   G C 
Sbjct: 793  KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCG 852

Query: 367  SSNVQNQHPESYCFEVRTERNQAG--SKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCP 424
            S       P S C  VR+   Q G  +++V     +I+  +  +  +    LV+   +  
Sbjct: 853  S-------PLSRCNRVRSNNKQQGLSARSV-----VIISAISALTAIGLMILVIALFF-- 898

Query: 425  RCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRS-FTLEELKEATN 483
                ++H   K V      G  S   T++   S+A         A +S    E++ EAT+
Sbjct: 899  ---KQRHDFFKKV------GHGSTAYTSSSSSSQATHKPLFRNGASKSDIRWEDIMEATH 949

Query: 484  NFDMSAIMGEGSYGKLYKGRLENGTSVAIR-CLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
            N     ++G G  GK+YK  LENG +VA++  L      + ++    +  L ++RH HLV
Sbjct: 950  NLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKTLGRIRHRHLV 1009

Query: 543  CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-----GKVLNWSERLAVLI 597
             L+G+C          +N   L+YE+M NG+    + E+ P      K+L+W  RL + +
Sbjct: 1010 KLMGYC----SSKSEGLN--LLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAV 1063

Query: 598  GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDP 656
            G+A+ V++LH   +P   +  +K++N+LL+ +  A L D+GL+ +++E+ ++      D 
Sbjct: 1064 GLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDT----NTDS 1119

Query: 657  NSW----------------EMTKLEDDVFSFGFMLLESVAG--PSVAARKGQ-----FLQ 693
            N+W                + T+ + DV+S G +L+E V G  P+ +    +     +++
Sbjct: 1120 NTWFACSYGYIAPEYAYSLKATE-KSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRWVE 1178

Query: 694  EELDSLNSQEGRQRLVDPVVMATSSLESLSI--VISIANKCICSESWSRPS 742
              L+   S   R +L+DP +      E  +   V+ IA +C  +    RPS
Sbjct: 1179 THLEVAGS--ARDKLIDPKLKPLLPFEEDAACQVLEIALQCTKTSPQERPS 1227

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  199 bits (507), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 185/665 (27%), Positives = 304/665 (45%), Gaps = 68/665 (10%)

Query: 116  RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDD 175
            R  SL  L +V   + G  P ++ +L +L  ++L  N   G +PP+I T  KLQ L L  
Sbjct: 467  RCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAA 526

Query: 176  NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL-PDLS 234
            N F++ +PN    L +L   ++ +N L GP PS I     L  LDLS+N+  GSL P+L 
Sbjct: 527  NQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELG 586

Query: 235  SLGSLNVLNLSDNKLDSNLPKLPRGLVMAF---LSNNSFSGEIPKQYGQLNQLQ-QLDMS 290
            SL  L +L LS+N+   N+P     L       +  N FSG IP Q G L+ LQ  +++S
Sbjct: 587  SLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLS 646

Query: 291  FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP--S 348
            +N   G  PP I +L  +  L+L +N  SG +P        L+  + S N LTG LP   
Sbjct: 647  YNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQ 706

Query: 349  CLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIM 408
               N +    +  +G C   ++++  P S+         +AGS   G+++ I+  V+  +
Sbjct: 707  IFQNMTLTSFLGNKGLC-GGHLRSCDP-SHSSWPHISSLKAGSARRGRIIIIVSSVIGGI 764

Query: 409  VLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEG-- 466
             LL    +V             H L   V+              A YV +      E   
Sbjct: 765  SLLLIAIVV-------------HFLRNPVE------------PTAPYVHDKEPFFQESDI 799

Query: 467  --LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLP-------S 517
              +P  R FT++++ EAT  F  S I+G G+ G +YK  + +G ++A++ L        +
Sbjct: 800  YFVPKER-FTVKDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNN 858

Query: 518  SKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH 577
            +   T  + +  +  L K+RH ++V L   C   G       N   L+YE+MS G+    
Sbjct: 859  NSNNTDNSFRAEILTLGKIRHRNIVRLYSFCYHQGS------NSNLLLYEYMSRGSL-GE 911

Query: 578  ISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
            +        ++W  R A+ +G A+ + +LH    P   +  +K+NNIL++E+  A + D+
Sbjct: 912  LLHGGKSHSMDWPTRFAIALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDF 971

Query: 638  GLSIV-----SEDINSVGGKQ---EDPNSWEMTKLED-DVFSFGFMLLESVAGPSVA--- 685
            GL+ V     S+ +++V G         ++ M   E  D++SFG +LLE + G +     
Sbjct: 972  GLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQPL 1031

Query: 686  ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS---LESLSIVISIANKCICSESWSRPS 742
             + G       + +        ++DP +        L  +  V  IA  C  S    RP+
Sbjct: 1032 EQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPT 1091

Query: 743  FEDIL 747
              +++
Sbjct: 1092 MREVV 1096

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  199 bits (506), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 180/671 (26%), Positives = 299/671 (44%), Gaps = 64/671 (9%)

Query: 110  FVTTLARLTSLRVLSLVSLG---IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMV 166
            F  T+  L   R LS + L    I   +P+ +    +L  L L +  L G +P  +    
Sbjct: 391  FSETMNVLQHCRNLSTLILSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCK 450

Query: 167  KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
            KL+ L L  N F  TIP+W   + SL ++   NN L G  P +I  +  L  L    N  
Sbjct: 451  KLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRL----NGT 506

Query: 227  SGSLPDLSSLGSLNVLNLSDNKLDSN-LPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQ 285
            +  + D S +      N S N L  N + + P  +   +L+NN  +G I  + G+L +L 
Sbjct: 507  ASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFPPSI---YLNNNRLNGTILPEIGRLKELH 563

Query: 286  QLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGG 345
             LD+S N   G  P +I  L N+  L+L+ N   GS+P +      L  F ++ N+LTG 
Sbjct: 564  MLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGA 623

Query: 346  LPSC-----------LSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNV 394
            +PS              N    R +    + L SN+ N    S        RN  G K  
Sbjct: 624  IPSGGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNPKGSS-------RRNNNGGK-F 675

Query: 395  GKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNAR 454
            G+       ++V+ + LA G  ++      R +       K V D+       E ++   
Sbjct: 676  GR-----SSIVVLTISLAIGITLLLSVILLRIS------RKDV-DDRINDVDEETISGVS 723

Query: 455  YVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRC 514
                 +K+       C+  ++EEL ++TNNF  + I+G G +G +YK    +G+  A++ 
Sbjct: 724  KALGPSKIVLFHSCGCKDLSVEELLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKR 783

Query: 515  LPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF 574
            L        R  +  ++ L++  H +LV L G+C  G  R         L+Y FM NG+ 
Sbjct: 784  LSGDCGQMEREFQAEVEALSRAEHKNLVSLQGYCKHGNDR--------LLIYSFMENGSL 835

Query: 575  RTHISENTPGKV-LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
               + E   G + L W  RL +  G A+ + +LH    P   +  VK++NILL+E   A 
Sbjct: 836  DYWLHERVDGNMTLIWDVRLKIAQGAARGLAYLHKVCEPNVIHRDVKSSNILLDEKFEAH 895

Query: 634  LSDYGLS---------IVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPS- 683
            L+D+GL+         + ++ + ++G    + +   +     DV+SFG +LLE V G   
Sbjct: 896  LADFGLARLLRPYDTHVTTDLVGTLGYIPPEYSQSLIATCRGDVYSFGVVLLELVTGRRP 955

Query: 684  VAARKGQFLQEELDSLNSQEGRQR---LVDPVVMATSSLESLSIVISIANKCICSESWSR 740
            V   KG+  ++ +  +   +  +R   L+D  +    +  ++  ++ IA KCI  E   R
Sbjct: 956  VEVCKGKSCRDLVSRVFQMKAEKREAELIDTTIRENVNERTVLEMLEIACKCIDHEPRRR 1015

Query: 741  PSFEDILWNLQ 751
            P  E+++  L+
Sbjct: 1016 PLIEEVVTWLE 1026

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 190/718 (26%), Positives = 321/718 (44%), Gaps = 89/718 (12%)

Query: 101  LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
            LS N+   S  ++L  L+ L+ L L    + G +P ++  L +LE L L  N L G +P 
Sbjct: 458  LSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPA 517

Query: 161  KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD 220
             +S   KL  + L +N  +  IP     L +L  L + NN ++G  P+ +    +L  LD
Sbjct: 518  SLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLD 577

Query: 221  LSKNAISGSLP---------------------------DLSSLGSLNVLN---LSDNKLD 250
            L+ N ++GS+P                                G+ N+L    +   +LD
Sbjct: 578  LNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLD 637

Query: 251  S-------NLPKLPRGLV---------MAFL--SNNSFSGEIPKQYGQLNQLQQLDMSFN 292
                    N  ++ RG+          M FL  S N   G IPK+ G +  L  L++  N
Sbjct: 638  RISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHN 697

Query: 293  ALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
             L GM P  +  L N++ L+L+ N+F+G++P +L     L   D+SNN L+G +P     
Sbjct: 698  DLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPF 757

Query: 353  ES--DKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVL 410
            ++  D R   F  N L        P S   +    ++Q   +    L G +   L+  + 
Sbjct: 758  DTFPDYR---FANNSLCG-YPLPLPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLFSLF 813

Query: 411  LAFGFLVVCRRYCPRCTSEQHLLHKSV--QDNSATGFSSEVLTNARYVSEAAKLGSEGL- 467
              FG ++V      R   ++  L   +    +SAT  S+   T+AR   EA  +      
Sbjct: 814  CIFGLIIVAIETKKRRRKKEAALEAYMDGHSHSATANSAWKFTSAR---EALSINLAAFE 870

Query: 468  PACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLK 527
               R  T  +L EATN F   +++G G +G +YK +L++G+ VAI+ L        R   
Sbjct: 871  KPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFT 930

Query: 528  LRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE-NTPGKV 586
              ++ + K++H +LV LLG+C  G  R         LVYE+M  G+    + +    G  
Sbjct: 931  AEMETIGKIKHRNLVPLLGYCKVGEER--------LLVYEYMKYGSLEDVLHDRKKTGIK 982

Query: 587  LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI 646
            LNW  R  + IG A+ + FLH   IP   +  +K++N+LL+E+  A++SD+G++ +   +
Sbjct: 983  LNWPARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAM 1042

Query: 647  NS-------VGGKQEDPNSWEMT---KLEDDVFSFGFMLLESVAG--PSVAARKGQFLQE 694
            ++        G     P  +  +     + DV+S+G +LLE + G  P+ +A    F   
Sbjct: 1043 DTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKQPTDSA---DFGDN 1099

Query: 695  ELDSLNSQEGRQRLVD----PVVMATSSLE-SLSIVISIANKCICSESWSRPSFEDIL 747
             L        + ++ D     ++   +S+E  L   + +A  C+    W RP+   ++
Sbjct: 1100 NLVGWVKLHAKGKITDVFDRELLKEDASIEIELLQHLKVACACLDDRHWKRPTMIQVM 1157

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 190/718 (26%), Positives = 321/718 (44%), Gaps = 89/718 (12%)

Query: 101  LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
            LS N+   S  ++L  L+ L+ L L    + G +P ++  L +LE L L  N L G +P 
Sbjct: 458  LSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPA 517

Query: 161  KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD 220
             +S   KL  + L +N  +  IP     L +L  L + NN ++G  P+ +    +L  LD
Sbjct: 518  SLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLD 577

Query: 221  LSKNAISGSLP---------------------------DLSSLGSLNVLN---LSDNKLD 250
            L+ N ++GS+P                                G+ N+L    +   +LD
Sbjct: 578  LNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLD 637

Query: 251  S-------NLPKLPRGLV---------MAFL--SNNSFSGEIPKQYGQLNQLQQLDMSFN 292
                    N  ++ RG+          M FL  S N   G IPK+ G +  L  L++  N
Sbjct: 638  RISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHN 697

Query: 293  ALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
             L GM P  +  L N++ L+L+ N+F+G++P +L     L   D+SNN L+G +P     
Sbjct: 698  DLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPF 757

Query: 353  ES--DKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVL 410
            ++  D R   F  N L        P S   +    ++Q   +    L G +   L+  + 
Sbjct: 758  DTFPDYR---FANNSLCG-YPLPIPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLFSLF 813

Query: 411  LAFGFLVVCRRYCPRCTSEQHLLHKSV--QDNSATGFSSEVLTNARYVSEAAKLGSEGL- 467
              FG ++V      R   ++  L   +    +SAT  S+   T+AR   EA  +      
Sbjct: 814  CIFGLIIVAIETKKRRRKKEAALEAYMDGHSHSATANSAWKFTSAR---EALSINLAAFE 870

Query: 468  PACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLK 527
               R  T  +L EATN F   +++G G +G +YK +L++G+ VAI+ L        R   
Sbjct: 871  KPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFT 930

Query: 528  LRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKV 586
              ++ + K++H +LV LLG+C  G  R         LVYE+M  G+    + +    G  
Sbjct: 931  AEMETIGKIKHRNLVPLLGYCKVGEER--------LLVYEYMKYGSLEDVLHDRKKIGIK 982

Query: 587  LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI 646
            LNW  R  + IG A+ + FLH   IP   +  +K++N+LL+E+  A++SD+G++ +   +
Sbjct: 983  LNWPARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAM 1042

Query: 647  NS-------VGGKQEDPNSWEMT---KLEDDVFSFGFMLLESVAG--PSVAARKGQFLQE 694
            ++        G     P  +  +     + DV+S+G +LLE + G  P+ +A    F   
Sbjct: 1043 DTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKQPTDSA---DFGDN 1099

Query: 695  ELDSLNSQEGRQRLVD----PVVMATSSLE-SLSIVISIANKCICSESWSRPSFEDIL 747
             L        + ++ D     ++   +S+E  L   + +A  C+    W RP+   ++
Sbjct: 1100 NLVGWVKLHAKGKITDVFDRELLKEDASIEIELLQHLKVACACLDDRHWKRPTMIQVM 1157

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	766
225456272	770	PREDICTED: probable inactive leucine-ric	0.979	0.974	0.701	0.0
224133902	737	predicted protein [Populus trichocarpa]	0.943	0.981	0.690	0.0
255540293	802	leucine-rich repeat protein, putative [R	0.939	0.897	0.669	0.0
147788411	773	hypothetical protein VITISV_008739 [Viti	0.996	0.987	0.626	0.0
356518897	763	PREDICTED: probable inactive leucine-ric	0.985	0.989	0.627	0.0
449469629	780	PREDICTED: probable inactive leucine-ric	0.993	0.975	0.625	0.0
356507347	743	PREDICTED: probable inactive leucine-ric	0.966	0.995	0.619	0.0
255536961	769	leucine-rich repeat protein, putative [R	0.990	0.986	0.609	0.0
357463601	755	Receptor protein kinase-like protein [Me	0.976	0.990	0.621	0.0
449441678	767	PREDICTED: probable inactive leucine-ric	0.994	0.993	0.575	0.0

>gi|225456272|ref|XP_002279697.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Vitis vinifera]

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/750 (70%), Positives = 611/750 (81%)

Query: 16  WSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFI 75
           W+ F LGTHQLQSSQTQVLLQLRK LEYP QLEIW +H  DFCY+SSSTQVNITCQD+F+
Sbjct: 14  WNFFILGTHQLQSSQTQVLLQLRKQLEYPVQLEIWKDHTLDFCYLSSSTQVNITCQDSFV 73

Query: 76  TELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLP 135
           T +KI+GDK     NFDGFA    +LS  FS+DSFVTTLARLTSLRVLSLVSLGIWG LP
Sbjct: 74  TGIKIMGDKTVKDSNFDGFAIPTVTLSGAFSMDSFVTTLARLTSLRVLSLVSLGIWGPLP 133

Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
           DKIHRL SLEYLDLSSNFLFGSVPPKI TMVKLQ L LD N+FN T+P+  DSL +LT L
Sbjct: 134 DKIHRLSSLEYLDLSSNFLFGSVPPKICTMVKLQALSLDGNYFNGTVPDCLDSLSNLTVL 193

Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK 255
           S+ NN+L GPFP+SIQRI+TLSDLD S N ISG LPDLS L SL++L++S NKLDS LP 
Sbjct: 194 SLGNNRLNGPFPASIQRIATLSDLDFSGNEISGKLPDLSRLTSLHLLDMSKNKLDSKLPA 253

Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
           LP+G+ MAFLSNNSF GEIP+QY +L QLQ LD+SFN L G PP A+FSLPNIS LNLAS
Sbjct: 254 LPKGVAMAFLSNNSFMGEIPQQYSRLVQLQHLDLSFNFLTGTPPEALFSLPNISYLNLAS 313

Query: 316 NKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHP 375
           N  SGSL  +++C  +L F DISNNKLTGGLPSCLS   DKRVV   GNCLS   Q+QHP
Sbjct: 314 NTLSGSLSNHIHCSSELSFVDISNNKLTGGLPSCLSTALDKRVVNSDGNCLSIGFQHQHP 373

Query: 376 ESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHK 435
           +SYC  V  ++ ++ SK++G LV +I GV V  +LL FG   VC+R C R  SEQHLLHK
Sbjct: 374 DSYCMAVPVKKKESRSKDMGILVAVIGGVFVATLLLVFGCFFVCKRCCSRSISEQHLLHK 433

Query: 436 SVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGS 495
           +VQ+NS TG SSE+LTNAR++ + AKLG+EG+P CR F+LEEL+EATNNFD S  MG+GS
Sbjct: 434 TVQENSTTGLSSELLTNARFIPQVAKLGTEGVPVCRVFSLEELREATNNFDRSTFMGDGS 493

Query: 496 YGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD 555
            GKLYKGRLENGT VAIRCLP SKKYT+RNLKLRLDL+A+LRH HLVCLLGH ID GGRD
Sbjct: 494 NGKLYKGRLENGTQVAIRCLPLSKKYTIRNLKLRLDLIARLRHTHLVCLLGHGIDTGGRD 553

Query: 556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF 615
           D +V KVFL+YE++ NGNFR+H+SEN P K L WSERL+VLIGVAKA+ FLHTGVIPGFF
Sbjct: 554 DSSVYKVFLIYEYLPNGNFRSHLSENGPEKALKWSERLSVLIGVAKALHFLHTGVIPGFF 613

Query: 616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFML 675
           NNR+KTNNILLNEH +AKLSDYGLSI+SE+ +  G K +   SW+MTKLEDDV+SFG +L
Sbjct: 614 NNRLKTNNILLNEHGMAKLSDYGLSIISEENDKHGEKGDGLKSWQMTKLEDDVYSFGLIL 673

Query: 676 LESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICS 735
           LES+ GPSV+AR+  FLQ E+ S  SQ+GR+R+VDP V+AT S ESLSI ISI NKCI  
Sbjct: 674 LESLVGPSVSARREAFLQNEMASFGSQDGRRRIVDPTVLATCSQESLSIAISITNKCISL 733

Query: 736 ESWSRPSFEDILWNLQYAAQVQETADNEQR 765
           +S +RPS EDILWNLQYAAQ+Q TAD +QR
Sbjct: 734 DSSTRPSAEDILWNLQYAAQIQTTADGDQR 763

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133902|ref|XP_002321688.1| predicted protein [Populus trichocarpa] gi|222868684|gb|EEF05815.1| predicted protein [Populus trichocarpa]

 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/750 (69%), Positives = 604/750 (80%), Gaps = 27/750 (3%)

Query: 16  WSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFI 75
           W     GTHQLQSSQTQVLLQ+RKHLEYP QLEIW NHG D CY+S STQVN+TCQ+N +
Sbjct: 14  WGFLITGTHQLQSSQTQVLLQIRKHLEYPSQLEIWNNHGMDLCYLSPSTQVNMTCQNNVV 73

Query: 76  TELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLP 135
           TEL+I+GDKP+ V NF GFA  N +LS +FS+DSFVTTL+RLTSLRVLSLVSLGIWG LP
Sbjct: 74  TELRIVGDKPAKVNNFVGFAIPNQTLSGSFSMDSFVTTLSRLTSLRVLSLVSLGIWGPLP 133

Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
           DKIHRL SLEYLDLSSN LFGS+PPKISTMVKLQTL LDDNFFN T+PNWFDSL +LT L
Sbjct: 134 DKIHRLSSLEYLDLSSNNLFGSIPPKISTMVKLQTLNLDDNFFNGTVPNWFDSLSNLTIL 193

Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK 255
           S+RNN+L G FPSSIQR++TL DL LS N +SG LP+L  L  LNVL+LS N LDS+LP 
Sbjct: 194 SIRNNQLKGAFPSSIQRVTTLVDLILSGNDLSGKLPNLDRLSKLNVLDLSGNSLDSDLPS 253

Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
           +P+GLVMAFLSNNS SGE+P +Y QL+QLQ  DMSFN L G  P ++ SLPNIS LNLAS
Sbjct: 254 MPKGLVMAFLSNNSLSGEVPGKYSQLSQLQHFDMSFNKLSGKLPASLLSLPNISYLNLAS 313

Query: 316 NKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHP 375
           N  SGSLP +LNCG KL   DISNN+LTGGLP CLS ES  RVVK  GNCLS ++++QH 
Sbjct: 314 NMLSGSLPDHLNCGSKLQLVDISNNRLTGGLPYCLSTESGNRVVKLGGNCLSVDLRHQHA 373

Query: 376 ESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHK 435
           ES C +V  +R  +G K +  LVG+I G+ VI+VLLAFG L+VC+RYCP   SEQHLLHK
Sbjct: 374 ESSCIDVPVKRKPSGEKKIVVLVGVIAGIFVIIVLLAFGLLMVCKRYCPLGISEQHLLHK 433

Query: 436 SVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGS 495
           + Q+ S TGFSSE+L+NA ++SEAA LG +G PACRSFT+EELKEATNNF+ SAI+G+GS
Sbjct: 434 AAQEKSVTGFSSEILSNASFISEAANLGIQGRPACRSFTIEELKEATNNFNNSAILGDGS 493

Query: 496 YGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD 555
           +GKLY+G LENGT VAIR +PSSKKY++RNLKLRLDLLAKLRHPHLVCLLGHCID GG  
Sbjct: 494 HGKLYRGTLENGTQVAIRRIPSSKKYSMRNLKLRLDLLAKLRHPHLVCLLGHCID-GGEQ 552

Query: 556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF 615
           DY VNKVFLVYE++SNGNF  ++SE+ PGKVLNWSERLAVLI VAKA+ FLHTGVIPGFF
Sbjct: 553 DYTVNKVFLVYEYVSNGNFGAYLSEDNPGKVLNWSERLAVLISVAKAIHFLHTGVIPGFF 612

Query: 616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFML 675
           NNR+K NNILL+E+ IAK                          ++ +LEDDV SFGF+L
Sbjct: 613 NNRLKANNILLDEYGIAK--------------------------QLERLEDDVCSFGFIL 646

Query: 676 LESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICS 735
           LES+ GPSV+AR+ +FL +EL S +SQEGRQ+L+ P+V+AT S ESLSIV++I NKCICS
Sbjct: 647 LESLVGPSVSARRDKFLLDELASCSSQEGRQKLLSPIVLATCSHESLSIVVTITNKCICS 706

Query: 736 ESWSRPSFEDILWNLQYAAQVQETADNEQR 765
           ESWSRPSFEDILWNLQYA QVQ TAD E  
Sbjct: 707 ESWSRPSFEDILWNLQYAVQVQGTADGEHH 736

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540293|ref|XP_002511211.1| leucine-rich repeat protein, putative [Ricinus communis] gi|223550326|gb|EEF51813.1| leucine-rich repeat protein, putative [Ricinus communis]

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/766 (66%), Positives = 608/766 (79%), Gaps = 46/766 (6%)

Query: 1   MYMGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYI 60
           + MG  + LLLLCL WS   LGT QLQSSQTQVLLQLRKHLEYP QLEIW +H  DFCY+
Sbjct: 79  LSMGYCSWLLLLCLVWSSLILGTLQLQSSQTQVLLQLRKHLEYPYQLEIWNDHTIDFCYL 138

Query: 61  SSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSL 120
           SS+TQVN+TCQDNF+TEL+I+GDKP+ V +F GFA    +LSENFSIDSFV TLARL SL
Sbjct: 139 SSTTQVNVTCQDNFVTELRILGDKPTQVNSFVGFAIPTITLSENFSIDSFVVTLARLNSL 198

Query: 121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN 180
           +VLSLVSLGIWG LPDKIHRL SLEYL+LSSN+LFGSVPPKISTMVKLQTLILDDNFFN+
Sbjct: 199 KVLSLVSLGIWGPLPDKIHRLSSLEYLELSSNYLFGSVPPKISTMVKLQTLILDDNFFNH 258

Query: 181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLN 240
           T+PNWFDSL +LT L +RNNKL GPFPSSIQ+++TL+D+ LS N ISG LP+L +L +L+
Sbjct: 259 TVPNWFDSLSNLTILRLRNNKLKGPFPSSIQKLATLTDVILSGNEISGKLPNLEALHNLH 318

Query: 241 VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
           +L+LS+N LDSNLP +P+GL MAFLSNNSFSGEIP+QY QL++LQ LD+SFN L G PP 
Sbjct: 319 LLDLSENNLDSNLPSMPKGLAMAFLSNNSFSGEIPQQYSQLSELQHLDVSFNVLSGKPPA 378

Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVK 360
            +FSLPNIS LNLASN  SGSLP +L+CG KL F DISNN  TGGLP CLS ES  R VK
Sbjct: 379 TLFSLPNISYLNLASNMLSGSLPNHLSCGSKLQFVDISNNSFTGGLPYCLSIESGDRAVK 438

Query: 361 FRGNCLSSNVQNQHPESYCFEV--RTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVV 418
           F GNCLS  + +Q  ES C  V    +R Q+G KNV  LVG+I  +L+++VLLA GFL+V
Sbjct: 439 FDGNCLSIELHHQRAESSCVNVPMAVKRKQSGGKNVALLVGVITVILIVVVLLAIGFLIV 498

Query: 419 CRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEEL 478
           CRRYCPR  SEQHLLHK+VQ+NSATGFSSE+LTNAR++S+AAKLG++GLP CR FTLEEL
Sbjct: 499 CRRYCPRGVSEQHLLHKAVQENSATGFSSEILTNARWISQAAKLGTQGLPVCRPFTLEEL 558

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH 538
           KEAT NFD + I+GEG YGK+                  SK +             K RH
Sbjct: 559 KEATRNFDNAIILGEGFYGKVL-----------------SKTF-------------KTRH 588

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           PHLVCLLGHCIDGGG+DDY VNKVFL+YE++SNGN R H+ E++PGKVLNWSERL VLIG
Sbjct: 589 PHLVCLLGHCIDGGGQDDYRVNKVFLIYEYISNGNLRAHLCEDSPGKVLNWSERLTVLIG 648

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS 658
           VAKAV FLHTGVIPGFFNN++KTNNILL+EH +AKLSDYGLSIVS++             
Sbjct: 649 VAKAVHFLHTGVIPGFFNNQLKTNNILLSEHGVAKLSDYGLSIVSDE------------- 695

Query: 659 WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS 718
            +M +L+DDV+SFG++LLES+ G SV+AR+ + L +EL S NSQ+  +RL++P+V+AT +
Sbjct: 696 -QMVRLDDDVYSFGYILLESLVGRSVSARRDKLLIDELASCNSQDSHRRLINPIVLATCT 754

Query: 719 LESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQ 764
            ESLSIVISI NKCI +ESWSRPS EDILWNLQYAAQVQ TAD  +
Sbjct: 755 QESLSIVISITNKCISTESWSRPSLEDILWNLQYAAQVQATADGTK 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788411|emb|CAN69961.1| hypothetical protein VITISV_008739 [Vitis vinifera]

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/766 (62%), Positives = 589/766 (76%), Gaps = 3/766 (0%)

Query: 3   MGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISS 62
           MG  NL+ L  L W  F   THQ+QSSQTQ LLQLRKHLEYP  LEIW N+  DFC ++S
Sbjct: 1   MGLLNLVFLAFLFWVFFISHTHQMQSSQTQALLQLRKHLEYPXALEIWENYSGDFCNLAS 60

Query: 63  STQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRV 122
           +  + ITCQDN ++ELKI+GDK   V +F GFA  N +LS+ FSIDSFVTTL+RL+ LRV
Sbjct: 61  TPHMAITCQDNSVSELKIMGDKHVKVSDFSGFAVPNETLSDGFSIDSFVTTLSRLSGLRV 120

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           LSLVSLGIWG LPDKIHRL  LE LDLSSNF+FGS+PPK+ST+VKLQTL LD NFFN+++
Sbjct: 121 LSLVSLGIWGPLPDKIHRLALLEVLDLSSNFMFGSIPPKVSTLVKLQTLTLDANFFNDSV 180

Query: 183 PNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVL 242
           P+W DSL +L+ LS+RNN+  G FP SI RI+TL+D+ LS N +SG LPDLSSL +L+VL
Sbjct: 181 PDWMDSLSNLSSLSLRNNRFKGQFPPSISRIATLTDVALSHNELSGKLPDLSSLTNLHVL 240

Query: 243 NLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
           +L DN LDS LP +P+GLV A LS NSFSGEIP Q G+L QLQ LD+SFN+L G PP A+
Sbjct: 241 DLRDNHLDSELPIMPKGLVTALLSENSFSGEIPAQLGELAQLQHLDLSFNSLTGTPPSAL 300

Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
           FS+ NIS LNLASN  SGSLP  L+CG +L F DIS+NKL G LPSCLS  SD+RVVKF 
Sbjct: 301 FSMANISYLNLASNMLSGSLPDGLSCGDELGFVDISSNKLMGVLPSCLSIASDRRVVKFG 360

Query: 363 GNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRR- 421
           GNC S + Q+QH ESYC     +  Q+  K +G L+G I G ++I+  LAF   ++CRR 
Sbjct: 361 GNCFSIDAQHQHQESYCKAAHIKGKQSKGKEIGVLLGAIAGAVIIVAFLAFVLFILCRRC 420

Query: 422 --YCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELK 479
             Y  R + EQ  + K  Q+NS+TG S E+L NAR++S+AAKLG++G P  R F+LEELK
Sbjct: 421 RKYPSRGSFEQPAMPKLAQENSSTGISPELLANARFISQAAKLGTQGSPTYRLFSLEELK 480

Query: 480 EATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP 539
           +ATNNFD    +GEGS GKLYKG+LENG  V IR +   +KY++RNLKLRLDLL+KLRHP
Sbjct: 481 DATNNFDPMTFLGEGSIGKLYKGKLENGAYVGIRTITLYRKYSIRNLKLRLDLLSKLRHP 540

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           HLV LLGHCIDGGG+DD  V++ FL+YE+M NGN+ TH+SEN P KVL WS+RLAVLIGV
Sbjct: 541 HLVSLLGHCIDGGGQDDSNVDRFFLIYEYMPNGNYHTHLSENCPAKVLKWSDRLAVLIGV 600

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW 659
           AKAV FLHTGVIPG FNNR+KTNNILL+EHRIAKLSDYG+SI+ E+   V  K+E    W
Sbjct: 601 AKAVHFLHTGVIPGSFNNRLKTNNILLDEHRIAKLSDYGMSIIMEENEKVDAKKEGGKPW 660

Query: 660 EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL 719
           +  +LEDDV++FGF+LLES+ GP V  +   FL  E+ S  SQ+GR+R+VDP+V+ TSS 
Sbjct: 661 QRKQLEDDVYNFGFILLESLVGPIVTGKGETFLLNEMASFGSQDGRKRIVDPIVLTTSSQ 720

Query: 720 ESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQR 765
           ESLSIV+SI +KC+  E  +RPSFED+LWNLQYAAQVQ TAD +Q+
Sbjct: 721 ESLSIVVSITSKCVSPEPSTRPSFEDVLWNLQYAAQVQATADADQK 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518897|ref|XP_003528113.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/765 (62%), Positives = 600/765 (78%), Gaps = 10/765 (1%)

Query: 3   MGQGNLLLLLCLSWSLFPLGT--HQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYI 60
           MG  +L+LL C +W +F +G+   QLQSSQTQVLLQL+KHLEYPKQLEIW +   D C I
Sbjct: 1   MGFHDLVLLFCSAWCVFYVGSCSAQLQSSQTQVLLQLKKHLEYPKQLEIWRDRWTDLCSI 60

Query: 61  SSSTQVNITCQDNFITELKIIGD-KPSNVG-NFDGFASANASLSENFSIDSFVTTLARLT 118
           SS  QVN+TC+DNF+TEL I+GD KP+  G +FDGFA  N +LSE+FS+DS V TLARLT
Sbjct: 61  SSPGQVNVTCKDNFVTELTILGDDKPTTKGRDFDGFAIPNQTLSESFSMDSLVATLARLT 120

Query: 119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFF 178
           SLRVL+LVSLG+WG LPD+IHRLY+LE+LDLSSN+L+GS+PPKI TM  LQTL L DNFF
Sbjct: 121 SLRVLNLVSLGMWGPLPDRIHRLYALEHLDLSSNYLYGSIPPKICTMENLQTLRLVDNFF 180

Query: 179 NNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGS 238
           N TIP+ F+S   LT LS+++N+L GPFP SI  ++TL+++D+S N ISGSL DLS L S
Sbjct: 181 NGTIPSLFNSSSHLTVLSLKSNRLKGPFPPSILSVTTLTEIDMSSNQISGSLEDLSVLSS 240

Query: 239 LNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP 298
           L  L+L +N+L+S LP +P+GL+  +LS NSFSGEIPK YGQLN+L++LD+SFN+L G  
Sbjct: 241 LEELDLRENRLESKLPAMPKGLISLYLSRNSFSGEIPKHYGQLNRLEKLDVSFNSLTGTA 300

Query: 299 PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCL-SNESDKR 357
           P  +FSLPNIS LNLASN  +G L  +L C  +L F DIS N+  GGLPS L + +S+K 
Sbjct: 301 PSELFSLPNISYLNLASNMLNGPLQNHLRCSSQLRFVDISYNRFVGGLPSSLNTTKSEKI 360

Query: 358 VVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLV 417
           VVK  GNCLS +VQ+QH  SYC E   ++    S  VG  VG+IVG+L I+V+LA   ++
Sbjct: 361 VVKSDGNCLSGSVQHQHAVSYCTEAHVKKK---SYRVGIFVGLIVGILFIIVVLALTIII 417

Query: 418 VCRRYCPRCTSEQHLLHKSVQDNS-ATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLE 476
            C+RY P   SEQHLLHK+VQD+S A G SSE++TNARYVSEA KLG E LP CRS++LE
Sbjct: 418 TCKRYFPWGVSEQHLLHKTVQDSSYAAGLSSELVTNARYVSEAEKLGREDLPTCRSYSLE 477

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL 536
           ELKEATNNFD S  MGE  YGKLY+G+LE+G  V IR LP SKKY++RN KLRLDLLAKL
Sbjct: 478 ELKEATNNFDNSTFMGENIYGKLYRGKLESGIQVVIRSLPLSKKYSIRNFKLRLDLLAKL 537

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
           RHPHLV LLGHCIDG   ++   N VFL+YE++SNG F+T++S ++PGKV NWSERL+VL
Sbjct: 538 RHPHLVSLLGHCIDGVVGENNEAN-VFLIYEYVSNGTFQTYLSGDSPGKVFNWSERLSVL 596

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDP 656
           I VAKAV FLHTG+IPGFF NR+KTNNILLNE+ +AKLSDYGLSI+SE+ ++ G K E  
Sbjct: 597 INVAKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSIISEETDACGVKGESS 656

Query: 657 NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT 716
           +SW+M  LEDDV+SFGF+LLE++ GPS++A++   +   + S NSQ+G +++VDPV+ AT
Sbjct: 657 DSWQMKMLEDDVYSFGFILLEALVGPSLSAKREANVLNVMASFNSQDGWKQVVDPVLQAT 716

Query: 717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETAD 761
            S ESL +VISI NKCI SESWSRPS ED+LWNLQYA+Q+Q TAD
Sbjct: 717 CSKESLLVVISITNKCISSESWSRPSIEDVLWNLQYASQIQGTAD 761

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469629|ref|XP_004152521.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Cucumis sativus] gi|449530901|ref|XP_004172430.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Cucumis sativus]

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/777 (62%), Positives = 607/777 (78%), Gaps = 16/777 (2%)

Query: 3   MGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISS 62
           MG+ +LLLLLC +W+      +QLQ+SQ QVLLQLRKHLEYPKQLE W +H  DFC +S 
Sbjct: 1   MGKCDLLLLLCFAWTFLFAEAYQLQASQAQVLLQLRKHLEYPKQLESWTDHRVDFCTLSF 60

Query: 63  STQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRV 122
              VN+TCQD+ +TEL+I GD    V  F GFA  N +LSE FS+DSF+TTL RL SLRV
Sbjct: 61  LPLVNVTCQDSVVTELRIAGDTKDKVDEFIGFAIPNQTLSEGFSLDSFITTLTRLNSLRV 120

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           LSLVSLGIWG LPDKIHRL SLEYLDLSSN+LFGS+PPKIST+VKLQTL LDDNFFN+T+
Sbjct: 121 LSLVSLGIWGPLPDKIHRLSSLEYLDLSSNYLFGSIPPKISTLVKLQTLKLDDNFFNDTV 180

Query: 183 PNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVL 242
           PNWFDSL SLT LS++NNK+   FPSSI  ISTL++L +S N ISG LPDLS L  L VL
Sbjct: 181 PNWFDSLSSLTVLSLKNNKIKDSFPSSIVSISTLTELVMSGNEISGELPDLSPLHGLTVL 240

Query: 243 NLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
           +LS NKLDS+LP LP+ L+ A L  NSFSGEIP+QYG+L+QLQQLD+SFNAL G+PP +I
Sbjct: 241 DLSWNKLDSSLPPLPKSLITASLGKNSFSGEIPQQYGELSQLQQLDISFNALAGIPPASI 300

Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
           FSLPNIS LNL+SNK  GSL  +L CG  L F DISNN LTG LPSCL  ESD R +K  
Sbjct: 301 FSLPNISHLNLSSNKLFGSLSTHLRCGNMLQFVDISNNMLTGALPSCLGIESDNRTLKVD 360

Query: 363 GNCLSSNVQNQHPESYC----FEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVV 418
           GNCLS ++  QH +SYC     +    + Q+ +KN G ++G+++G+ + ++LL+   ++ 
Sbjct: 361 GNCLSVSIGKQHSKSYCDIDHIQQHQHQEQSKAKNAGAVMGLLLGIFLSVLLLSIVVVLF 420

Query: 419 CRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEEL 478
            RR  PR  SEQHLL KSVQD+SA GFSSE+LT+AR+VS+AAK+G +GLP CR+F+LEE+
Sbjct: 421 -RRCWPRGMSEQHLLQKSVQDSSAAGFSSELLTSARFVSQAAKIGIQGLPLCRTFSLEEI 479

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH 538
           +EAT+NF  S I+G+GSYGKLY+GRLENGT VAIR L  SKK+++RNLKLRLD+L KLRH
Sbjct: 480 REATSNFHDSTIIGDGSYGKLYRGRLENGTQVAIRSLVVSKKFSIRNLKLRLDMLGKLRH 539

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---------GKVLNW 589
           P+LVCLLGHCIDG G+D + + KVFL++E++SNG+FRTH+S+             KVLNW
Sbjct: 540 PNLVCLLGHCIDGEGQDYHDI-KVFLIFEYVSNGSFRTHLSDVFSFVLQIIVLVEKVLNW 598

Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV 649
           SERLA+LI VAKAV FLHTGVIPGFF+N++K NNIL++EH +AKLSDYGLSIVSE+    
Sbjct: 599 SERLAILISVAKAVHFLHTGVIPGFFDNQLKINNILIDEHNVAKLSDYGLSIVSEEPTKS 658

Query: 650 GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
             K E P +W++  L+DDV+SFGF+LLE++  PSV+ARKG  + +E+ SL+SQ+GR+RL+
Sbjct: 659 VAKAEGPQAWQLMNLKDDVYSFGFILLEALVAPSVSARKGPSILKEMMSLSSQDGRRRLI 718

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
           DP ++AT + ESLS +IS+ NKCI  E  SRPS ED+LWNLQYA QVQ+  D +QR+
Sbjct: 719 DPTILATCTQESLSTIISLMNKCISPE-MSRPSMEDVLWNLQYANQVQDARDGDQRY 774

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507347|ref|XP_003522429.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/767 (61%), Positives = 591/767 (77%), Gaps = 27/767 (3%)

Query: 3   MGQGNLLLLLCLSWSLFPLGT--HQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYI 60
           MG  +L+LL C +W +F +G+   QLQSSQTQVLLQL+KHLEYPKQLEIW +   D C I
Sbjct: 1   MGFHDLVLLFCSAWCVFYVGSCSAQLQSSQTQVLLQLKKHLEYPKQLEIWRDRWTDLCSI 60

Query: 61  SSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSL 120
           SSS QVN+TC+DNF+TEL I+GDKP+   +FDGFA+ N +LSE+FS++SFV TLARLTSL
Sbjct: 61  SSSGQVNVTCKDNFVTELTILGDKPTKGRDFDGFANPNQTLSESFSMESFVATLARLTSL 120

Query: 121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN 180
           RVLSLVSLG+WG LPD+IHRLY+LE+LDLSSN+L+GS+PPKI TMV LQTL L DNFFN 
Sbjct: 121 RVLSLVSLGMWGPLPDRIHRLYALEHLDLSSNYLYGSIPPKICTMVNLQTLRLGDNFFNG 180

Query: 181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLN 240
           TI + F S  +LT LS+++N+L GPFP SI  + TL+++D+S N ISG L DL+ L SL 
Sbjct: 181 TISSLFSSSNNLTVLSLKSNRLKGPFPLSIPSVITLTEIDMSCNQISGRLQDLTDLSSLE 240

Query: 241 VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
            L+L +N+LDS LP +P+GL+  FLS NSFSGEIP+ YGQL++LQ+LD+SFN+L G  P 
Sbjct: 241 QLDLRENRLDSKLPAMPKGLISLFLSRNSFSGEIPEHYGQLDRLQKLDVSFNSLTGTAPA 300

Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVK 360
            +FSLPNIS LNLASN  +G L  +L C  +L F DIS N+L G LPS LS +S+ RVVK
Sbjct: 301 ELFSLPNISYLNLASNMLNGPLHNHLRCSSQLRFVDISYNRLVGDLPSSLSTKSENRVVK 360

Query: 361 FRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCR 420
             GNCLS  V                       VG  VG+IVG+L I+V+LA   ++ C+
Sbjct: 361 SDGNCLSGRV-----------------------VGIFVGLIVGILAIIVVLALTIVITCK 397

Query: 421 RYCPRCTSEQHLLHKSVQDNS-ATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELK 479
           RY P   SEQHLLHK+VQD+S A G SSE+LTNARYVSEAAKLG E LP CRS++LEELK
Sbjct: 398 RYFPWGVSEQHLLHKTVQDSSYAAGISSELLTNARYVSEAAKLGREDLPTCRSYSLEELK 457

Query: 480 EATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP 539
           EATNNFD S  MGE  YGKLY+G+LE+G  V IR LP SKKY++RN KLRLDLLAKLRHP
Sbjct: 458 EATNNFDNSTFMGENIYGKLYRGKLESGIQVVIRSLPLSKKYSIRNFKLRLDLLAKLRHP 517

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           HLV LLGHC+DG   ++   N VFL+YE++SNG F+T++S ++PGKV NWSERL+VLI +
Sbjct: 518 HLVSLLGHCMDGAVGENNEAN-VFLIYEYVSNGTFQTYLSGDSPGKVFNWSERLSVLINI 576

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW 659
           AKAV FLHTG+IPGFF NR+KTNNILLNE+ +AKLSDYGLS++SE+ ++ G K E P+SW
Sbjct: 577 AKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSVISEETDASGVKGESPDSW 636

Query: 660 EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL 719
           +M  LEDDV+SFGF+LLE++ GPS++A+    +   + S NSQ+G +++VDPVV AT S 
Sbjct: 637 QMKMLEDDVYSFGFILLEALVGPSLSAKSEVNVLNVMASFNSQDGWKQIVDPVVQATCSK 696

Query: 720 ESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
           ESL +VISI NKCI SESWSRPS ED+LWNLQYA+Q+Q T D +QR 
Sbjct: 697 ESLLVVISITNKCISSESWSRPSIEDVLWNLQYASQIQATPDGDQRI 743

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536961|ref|XP_002509547.1| leucine-rich repeat protein, putative [Ricinus communis] gi|223549446|gb|EEF50934.1| leucine-rich repeat protein, putative [Ricinus communis]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/766 (60%), Positives = 582/766 (75%), Gaps = 7/766 (0%)

Query: 3   MGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISS 62
           MG  N  L+L LSW+     TH+LQ+ Q Q+LLQ+RKHLEYP QL+IW ++  + C + S
Sbjct: 1   MGLVNWFLILFLSWAFLIPRTHELQTYQYQLLLQVRKHLEYPSQLDIWGSYSGEPCNLPS 60

Query: 63  STQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRV 122
           +  ++I C+DN ITELKI GDK   V +F+GFA    +LS++FSIDS VTTLARLTSLRV
Sbjct: 61  TLYMSIICKDNVITELKIKGDKIVKVSDFNGFAIPGPTLSQSFSIDSLVTTLARLTSLRV 120

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           +SLVSLGIWG LPDKIHRLYSLE+LDLSSNFLFGSVPP+I+ +VKL +L+LD N+FN +I
Sbjct: 121 VSLVSLGIWGPLPDKIHRLYSLEFLDLSSNFLFGSVPPQIARLVKLNSLVLDGNYFNGSI 180

Query: 183 PNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVL 242
           P+W DSL +LT LS++NN+  G FPSSI RISTL+D+    N ++G+LPDLS+L SL+VL
Sbjct: 181 PDWLDSLSNLTVLSLKNNRFKGQFPSSICRISTLTDIAFCHNQLTGTLPDLSALTSLHVL 240

Query: 243 NLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
           +L +N LDS+LP +P+GL+   LSNNSFSG+I  Q+ QL+QLQ LD+S N L G PP ++
Sbjct: 241 DLRENNLDSDLPTMPKGLITILLSNNSFSGKIRAQFDQLSQLQHLDLSLNRLSGTPPSSL 300

Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
           FSLPNI  LNLASN  SGSLP +L+CG  L F DIS NK  GGLPSCL + S+KR +KF 
Sbjct: 301 FSLPNIRYLNLASNMLSGSLPDHLSCGSNLGFVDISTNKFIGGLPSCLGSMSNKRAIKFG 360

Query: 363 GNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRY 422
           GNCLS N Q QH E YC E   E  Q+  + VG LV +I G +++MVL+A G L  CRRY
Sbjct: 361 GNCLSINGQYQHQEPYCEEANIEAKQSRGRAVGTLVAVIGGAVLVMVLVALGVLFFCRRY 420

Query: 423 CPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEAT 482
             R T EQ++  K+VQDN+ T  SSEVL NAR++S+ AKLG++G P  R F+ EEL EAT
Sbjct: 421 SSRRTFEQNIFAKAVQDNAPTAVSSEVLANARFISQTAKLGTQGAPVHRVFSFEELTEAT 480

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           NNFD S  MGEGS GK+Y+GRLENGT+VAIR L   KK +++NLK+RLDLL+KL HPHLV
Sbjct: 481 NNFDSSTFMGEGSIGKIYRGRLENGTNVAIRSLTLLKKNSIQNLKVRLDLLSKLHHPHLV 540

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            LLG+CID  G DD +  KVFL+YE++SNGN+R H+SE  P KVL WS RLA+LIGVAKA
Sbjct: 541 GLLGYCIDSCGLDDLSGIKVFLIYEYVSNGNYRAHLSETCPEKVLKWSHRLAILIGVAKA 600

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE---DPNSW 659
           V FLHTGVIPG  NNR+KTNNILL+EHRIAKLSDYG+++++E+I     K E     N  
Sbjct: 601 VHFLHTGVIPGTLNNRLKTNNILLDEHRIAKLSDYGMAVMTEEIE----KLEVFLAANDV 656

Query: 660 EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL 719
            +T LEDDV++FGF+LLES+ GP V  +   FL  E+ S  SQ+GR+R+VDPVV+ T S 
Sbjct: 657 NLTNLEDDVYNFGFVLLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQ 716

Query: 720 ESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQR 765
           ESLSIV+SI +KCI  E  SRPSFED+LWNLQYAAQVQ TAD +Q+
Sbjct: 717 ESLSIVVSITSKCISPEPSSRPSFEDVLWNLQYAAQVQATADADQK 762

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463601|ref|XP_003602082.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355491130|gb|AES72333.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/759 (62%), Positives = 584/759 (76%), Gaps = 11/759 (1%)

Query: 3   MGQGNLLLLLCLSWSLFPLGT--HQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYI 60
           MG  +L+LL C  W +F +G+   QLQSSQ QVLLQL+KHLEYP QLEIW +   + C+I
Sbjct: 1   MGFYDLVLLFCYVWYVFYVGSCIAQLQSSQIQVLLQLQKHLEYPTQLEIWKDRRTELCFI 60

Query: 61  SSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSL 120
            S TQV ++C+DNF+ EL I GDKP+    FDGFA  N +LS++FS+DSFV TLARLTSL
Sbjct: 61  PS-TQVKVSCKDNFVIELSIFGDKPNKGRGFDGFAIPNQTLSQSFSMDSFVATLARLTSL 119

Query: 121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN 180
           RVL LVSLGIWG  PD+IHRL+SLE LDLSSN+L+GS+PPKISTMV LQ L+L DNFFN 
Sbjct: 120 RVLHLVSLGIWGPFPDRIHRLFSLEQLDLSSNYLYGSIPPKISTMVSLQILMLGDNFFNG 179

Query: 181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLN 240
           TIPN FDS  +LT  S++NNKL GPFP SI  I+TL+++D+S+N ISGSL D + L SL 
Sbjct: 180 TIPNLFDSSSNLTVFSLKNNKLKGPFPFSILSITTLTNIDMSRNQISGSLQDFTGLSSLE 239

Query: 241 VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
            L+L +N+LDS+LP LP+GL+  FL+ NSFSG+IPK YGQLN LQ LD+SFN L G  P 
Sbjct: 240 HLDLRENELDSDLPALPKGLISLFLNRNSFSGQIPKSYGQLNSLQHLDISFNTLTGATPS 299

Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVK 360
            +FSLPNI  LNL SN  SG+L  +L CG  L F DISNN+L G LP  LSN S+ R V+
Sbjct: 300 ELFSLPNIIYLNLGSNMLSGTLQNSLRCGRNLSFVDISNNRLIGALPYSLSNVSENRAVE 359

Query: 361 FRGNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCR 420
             GNCLS  +Q+QH  SYC E   ++    S  VG  VG+IVG+LVI+VL     +V+C+
Sbjct: 360 SDGNCLSGTLQHQHAVSYCAEAPDKKK---SNRVGIFVGVIVGILVIIVLFGLCIVVICK 416

Query: 421 RYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKE 480
           RY  R  +EQHLLHKSVQD+ + GFS E++ NARYVSEAAKLG E LP+CRS++LEEL E
Sbjct: 417 RYYSRGIAEQHLLHKSVQDSYSAGFSCELIANARYVSEAAKLGREDLPSCRSYSLEELME 476

Query: 481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
           ATNNFD S  +GE  YGKLYKG+LENG  V IRC+P SKKY++RN KLRLDLLAKLRH H
Sbjct: 477 ATNNFDNSTFLGENIYGKLYKGKLENGIPVVIRCIPLSKKYSIRNFKLRLDLLAKLRHTH 536

Query: 541 LVCLLGHCIDG--GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           L+ LLGHCIDG  G R+D   +KVFL+YE +SNGNF+T++S ++ GK+ NWSERL+VLI 
Sbjct: 537 LISLLGHCIDGILGERND---SKVFLIYECVSNGNFQTYLSGDSCGKIFNWSERLSVLIS 593

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS 658
           VAKA+ FLHTG+IPGFF NR+KTNNIL NE+ +AKLSDYGLSIVSE+ ++ G   E PNS
Sbjct: 594 VAKAIHFLHTGMIPGFFRNRLKTNNILFNENWMAKLSDYGLSIVSEETDASGVIGESPNS 653

Query: 659 WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS 718
           W+M KLEDD++SFGF++LE++ GPS+ A++   +   + S +SQ+  +++VDPVV AT  
Sbjct: 654 WQMKKLEDDIYSFGFIILEALVGPSMFAKREAAVLNAMASFSSQDEWKQIVDPVVQATCC 713

Query: 719 LESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ 757
            ESLSIVISI NKCI +ESWSRPS ED+LWNLQYA+QVQ
Sbjct: 714 KESLSIVISITNKCISTESWSRPSIEDVLWNLQYASQVQ 752

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441678|ref|XP_004138609.1| PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Cucumis sativus]

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/763 (57%), Positives = 569/763 (74%), Gaps = 1/763 (0%)

Query: 3   MGQGNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISS 62
           MG     L++ LSW LF   THQLQ+SQTQ+LLQ+RKHLE+P  LE+      D C +S 
Sbjct: 1   MGSLRFFLIISLSWILFLPFTHQLQTSQTQILLQIRKHLEFPSSLEVMDAFDGDLCNVSP 60

Query: 63  STQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRV 122
           S  + I CQDN +TEL I GDKP +   F+G    N +LSE FS+DSFVTTL+RL+SLRV
Sbjct: 61  SRNMTIACQDNVVTELIIKGDKPFDFKGFNGLPILNQTLSERFSMDSFVTTLSRLSSLRV 120

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           L L+SLGIWG LPDKIHRL SLE+LDLSSN+++G +PPKISTMV+L +L+LD NFFN+T+
Sbjct: 121 LGLISLGIWGQLPDKIHRLSSLEFLDLSSNYIYGQIPPKISTMVQLYSLVLDANFFNDTV 180

Query: 183 PNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVL 242
           P+W DSL +LTFLS+++N+L G FPSS+ +I TL+D+ LS N ISG LPDLS+L +L+VL
Sbjct: 181 PDWIDSLTNLTFLSLKSNRLKGQFPSSLCKIRTLADVYLSHNEISGELPDLSALANLHVL 240

Query: 243 NLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
           ++ +NKL+S LP +P+GLV   LS N+ SGEIPK +GQ++QLQ LD+S N L G PPP +
Sbjct: 241 DIRENKLNSVLPVMPKGLVTLLLSKNALSGEIPKHFGQMDQLQHLDLSSNRLTGSPPPFL 300

Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
           F+LPNI+ LNL+SN  SG+L   L+C  KL   DIS+NKLTG LPSCL + SDKR+VKF 
Sbjct: 301 FNLPNITYLNLSSNLMSGTLQNPLSCSAKLGDVDISDNKLTGTLPSCLGSSSDKRMVKFS 360

Query: 363 GNCLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRY 422
           GNC ++N+Q+QH  S C E      ++  K    +V  I G ++++VLLA G   + RR 
Sbjct: 361 GNCFATNLQHQHEASLCAESLAGTGESRRKEKLLIVAFISGAIIVIVLLALGVFFLYRRL 420

Query: 423 CPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEAT 482
           C R   EQ +  K VQ++S     SE+L NAR +S+A KLG++ +P CRSF+ +EL+EAT
Sbjct: 421 CKRTVQEQPVPPKVVQESSPATVPSELLANARLISQAMKLGAQTVPVCRSFSFQELREAT 480

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
            NFD S ++GEGS GKLY+G+LENGT VAIRCL  SKKY+V+NLK+RLD+L+KL HPHLV
Sbjct: 481 KNFDKSMLLGEGSIGKLYRGKLENGTLVAIRCLVLSKKYSVQNLKVRLDVLSKLHHPHLV 540

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L GHC++G G D+  VN+V LVYE++SN N+RT +SE  P KVL WS+RL +LIGVAKA
Sbjct: 541 GLFGHCMEGDGHDNSNVNQVLLVYEYVSNRNYRTLLSETFPEKVLKWSDRLTILIGVAKA 600

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMT 662
           + FLHTGVIPG FNN +KTNNILL+EHRI KLSDYG+SI++E+      K E   S    
Sbjct: 601 IHFLHTGVIPGSFNNGLKTNNILLDEHRIPKLSDYGMSIITEESEKHETKGESTKS-RRN 659

Query: 663 KLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESL 722
            +E+DV++FG++LLES+ GP V  ++  FL  ++ S  S +GR+R+VDPVV+ TSS ESL
Sbjct: 660 LVENDVYNFGYILLESLVGPIVTGKEETFLLNDMASFGSTDGRRRIVDPVVLITSSQESL 719

Query: 723 SIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQR 765
           S VISI  KCI  ++ SRPSFED+LWNLQYAAQVQ +AD EQ+
Sbjct: 720 SRVISITKKCISLDAASRPSFEDVLWNLQYAAQVQASADAEQK 762

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	766
TAIR|locus:2167326	680	AT5G63410 [Arabidopsis thalian	0.744	0.838	0.472	1.8e-133
TAIR|locus:2079339	802	AT3G03770 [Arabidopsis thalian	0.915	0.874	0.379	2.9e-126
TAIR|locus:2157042	953	AT5G49760 [Arabidopsis thalian	0.408	0.328	0.281	3.3e-45
TAIR|locus:2156992	946	AT5G49770 [Arabidopsis thalian	0.378	0.306	0.284	9.2e-44
TAIR|locus:2019863	971	AT1G79620 [Arabidopsis thalian	0.369	0.291	0.295	2.5e-43
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.343	0.220	0.293	1.3e-42
UNIPROTKB|Q8RZV7	1294	P0413C03.22 "Putative extra sp	0.352	0.208	0.278	4e-41
TAIR|locus:2084016	937	AT3G53590 [Arabidopsis thalian	0.272	0.223	0.334	5.5e-40
TAIR|locus:2181017	951	AT5G01950 [Arabidopsis thalian	0.389	0.313	0.298	8.2e-40
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.766	0.516	0.260	1.3e-39

TAIR|locus:2167326 AT5G63410 [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 289/612 (47%), Positives = 378/612 (61%)

Query:   168 LQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIX 227
             +  + L D F   +       L SL  L++ +  + G  P  + R+S+L  LDLS N + 
Sbjct:    95 ISNVTLSDGFSIESFVTTLSRLKSLRVLTLASLGIWGRLPEKLHRLSSLEYLDLSNNFLF 154

Query:   228 XXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVM-AF-LSNNSFSGEIPKQYGQLNQLQ 285
                                       PKL   + +  F   +N F+G +P  +     L+
Sbjct:   155 GSVP----------------------PKLSTMVKLETFRFDHNFFNGTLPSWFDSYWYLK 192

Query:   286 QLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGG 345
              L    N L G    ++ SL  I  ++L +N  SGSLP +L CG KL F DIS+NKLTG 
Sbjct:   193 VLSFKSNKLSGELHSSLLSLSTIEYIDLRANSLSGSLPDDLKCGSKLWFIDISDNKLTGK 252

Query:   346 LPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCF-EVRTE-----RNQAGSKNXXXXXX 399
             LP CLS++ D   ++F GNCLS   Q QHPES+C  EVR       + +A + N      
Sbjct:   253 LPRCLSSKQDI-ALRFNGNCLSLEKQ-QHPESFCVKEVRAAAKAEAKAEAEAANESGKRK 310

Query:   400 -XXXXXXXXXXXXAFGFLV-VCRRYC---PRCTSEQHLLHKSVQDNS-ATGFSSEVLTNA 453
                          +   LV VC  +     +  +++H+ H +VQDN   TGFSSE+L+NA
Sbjct:   311 WKKGALIGLIVGISMSVLVLVCCVFILLRRKGVTKKHVHHNTVQDNHPTTGFSSEILSNA 370

Query:   454 RYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGS-YGKLYKGRLENGTSVAI 512
             RY+SE +K GSE LP CR F+LEE+ +AT NFD + I+GE S YG LYKG LENGT VAI
Sbjct:   371 RYISETSKFGSEDLPVCRQFSLEEIVKATKNFDKTMILGESSLYGTLYKGNLENGTKVAI 430

Query:   513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
             RCLPSSKKY++RN            HP+LVCLLGHCID GG+DDY+V KVFL+YE++ NG
Sbjct:   431 RCLPSSKKYSIRNLKLRLDLLAKLRHPNLVCLLGHCIDCGGKDDYSVEKVFLIYEYIPNG 490

Query:   573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
             NF++ +S+N+ GK +NWSERL VL GVAKAV FLHTGVIPGFF+NR+KTNN+LLN+HR A
Sbjct:   491 NFQSCLSDNSSGKGMNWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVLLNQHRFA 550

Query:   633 KLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL 692
             KLSDYGLSIVSE   +     E   SW+M++LEDDV+SFG +LL+S+ GPSV+AR+  FL
Sbjct:   551 KLSDYGLSIVSE---ATRHNTEIAKSWQMSRLEDDVYSFGLILLQSIVGPSVSAREEAFL 607

Query:   693 QEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQY 752
             ++EL SL S+EGR+R+V+P V AT             NKC+  ES SRPSFEDILWNLQY
Sbjct:   608 RDELASLESEEGRRRMVNPTVQATCRNGSLIRVITLMNKCVSPESLSRPSFEDILWNLQY 667

Query:   753 AAQVQETADNEQ 764
             A+Q+Q  +D +Q
Sbjct:   668 ASQLQAASDGDQ 679

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079339 AT3G03770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 278/733 (37%), Positives = 408/733 (55%)

Query:    41 LEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANAS 100
             L YPK L  W N+  DFC    S  + + C ++ +T+L IIGD  +++            
Sbjct:    41 LYYPKVLNSWNNY-TDFCNSEPSPSLTVVCYEDSVTQLHIIGDNGTHM------------ 87

Query:   101 LSENFSIDSFXXXXXXXXXXXXXXXXXXGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
             L ++FSI+SF                  G+WG LP KI+RL SLE L++SSNFLFG +P 
Sbjct:    88 LPKSFSINSFVTTLVKLPDVKVLTFVSLGLWGWLPQKINRLSSLEILNVSSNFLFGPIPH 147

Query:   161 KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD 220
             ++S++  LQTLILD+N F+  +P+W DSLPSL  LS+R N L G  PSS+  +S L  L 
Sbjct:   148 ELSSLATLQTLILDENMFSGELPDWIDSLPSLAVLSLRKNVLNGSLPSSLSSLSGLRVLA 207

Query:   221 LSKNAIXXXXXXXXXXXXXXXXXXXXXXXXXXXPKLPRGLVMAFLSNNSFSGEIP-KQYG 279
             L+ N                             P+L   LV   LS N F   +  ++  
Sbjct:   208 LANNRFNGALPDLSHLTNLQVLDLEGNSFGPLFPRLSNKLVTLILSKNKFRSAVSAEEVS 267

Query:   280 QLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN 339
              L QLQ LD+S+N   G  P ++ SLP I+ LN++ NK +G L  NL+C  +L+F D+S+
Sbjct:   268 SLYQLQHLDLSYNTFVGPFPTSLMSLPAITYLNISHNKLTGRLSANLSCNSQLMFVDMSS 327

Query:   340 NKLTGGLPSCLSNESD-KRVVKFRGNCLSSNVQNQHPESYCFE------VRTERNQAGSK 392
             N LTG LP+CL   S   R V +  NCL++  ++Q P S+C        +  +R    SK
Sbjct:   328 NLLTGSLPTCLKPSSGTSRDVVYASNCLATTNEDQRPVSFCSNEALAVGILPQRRNKVSK 387

Query:   393 NXXXXXXXXXXXXXXXXXXAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTN 452
                                A    VV RR   + T  +    + +++N++ G++S++L++
Sbjct:   388 VGIALGVTASILGVLLLAGAL--FVVLRRLNAKKTVTKSS-PRLIRENASMGYTSKLLSD 444

Query:   453 ARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAI 512
             ARY+S+  KLG  GLPA R+F+LEEL+ ATNNF+ SA MGEGS G++Y+GRL++G+ VAI
Sbjct:   445 ARYISQTMKLGGLGLPAYRTFSLEELEYATNNFESSAFMGEGSQGQIYRGRLKDGSFVAI 504

Query:   513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
             RCL   K  + +N            H HLV +LGHC +    DD  V+++F V+E++ NG
Sbjct:   505 RCLKMKKSCSTQNLMHHIELIAKLRHRHLVSVLGHCFECY-LDDSTVSRMFFVFEYVPNG 563

Query:   573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
               RT IS+   G++L W +R++V IGVAK +QFLHTG++PG ++N +K  +ILL+ +  A
Sbjct:   564 ELRTWISDGHMGRLLTWEQRISVAIGVAKGIQFLHTGIVPGVYDNNLKMTDILLDNNLAA 623

Query:   633 KLSDYGLSIVSEDINSVG--GKQEDPNSWEMTKLED--DVFSFGFMLLESVAG-PSVAAR 687
             KLS Y L ++ E +  VG  G +  P      K ED  D++ FG +LLE + G P  A  
Sbjct:   624 KLSSYNLPLLVEGLGKVGQVGSRSGPKGTPSIKDEDKIDIYDFGVILLELIVGRPLRAKS 683

Query:   688 KGQFLQEELD-SLNSQEGRQR-LVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFED 745
             +   L+E+L  S+++ +G +R +VDP V                 +C+  +   RPS ED
Sbjct:   684 QVDVLKEQLQASISADDGARRSMVDPTVHRACSDQSLKTMMEICVRCLLKDPLERPSIED 743

Query:   746 ILWNLQYAAQVQE 758
             +LWNLQ+A+QVQE
Sbjct:   744 VLWNLQFASQVQE 756

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2157042 AT5G49760 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 96/341 (28%), Positives = 166/341 (48%)

Query:   431 HLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAI 490
             + L +  +   ATG ++     A++ +  + + +  L   ++FT EELK+ T+NF  +  
Sbjct:   580 YALRQKKRAERATGQNNPF---AKWDTSKSSIDAPQLMGAKAFTFEELKKCTDNFSEAND 636

Query:   491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
             +G G YGK+Y+G L NG  +AI+                        H ++V LLG C D
Sbjct:   637 VGGGGYGKVYRGILPNGQLIAIKRAQQGSLQGGLEFKTEIELLSRVHHKNVVRLLGFCFD 696

Query:   551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      N+  LVYE++SNG+ +  +S  + G  L+W+ RL + +G  K + +LH   
Sbjct:   697 R--------NEQMLVYEYISNGSLKDSLSGKS-GIRLDWTRRLKIALGSGKGLAYLHELA 747

Query:   611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED------INSVGGKQE--DPNSWEMT 662
              P   +  +K+NNILL+E+  AK++D+GLS +  D         V G     DP  +   
Sbjct:   748 DPPIIHRDIKSNNILLDENLTAKVADFGLSKLVGDPEKTHVTTQVKGTMGYLDPEYYMTN 807

Query:   663 KLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDS-LNSQEGR---QRLVDPVVMAT 716
             +L +  DV+ FG +LLE + G S   R G+++  E+ + +N        Q L+D  ++A+
Sbjct:   808 QLTEKSDVYGFGVVLLELLTGRSPIER-GKYVVREVKTKMNKSRSLYDLQELLDTTIIAS 866

Query:   717 XXXXXXXXXXXX-ANKCICSESWSRPSFEDILWNLQYAAQV 756
                          A +C+  E  +RPS  +++  ++   Q+
Sbjct:   867 SGNLKGFEKYVDLALRCVEEEGVNRPSMGEVVKEIENIMQL 907

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2156992 AT5G49770 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 9.2e-44, Sum P(2) = 9.2e-44
 Identities = 89/313 (28%), Positives = 148/313 (47%)

Query:   453 ARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAI 512
             A++ +   ++ +  L   ++FT EEL + TNNF  +  +G G YG++YKG L NG  +AI
Sbjct:   602 AKWDAGKNEMDAPQLMGTKAFTFEELSKCTNNFSDANDVGGGGYGQVYKGTLPNGQVIAI 661

Query:   513 RCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
             +                        H ++V LLG C D          +  LVYE++ NG
Sbjct:   662 KRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQ--------KEQMLVYEYIPNG 713

Query:   573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
             + R  +S    G  L+W+ RL + +G  K + +LH    P   +  VK+NNILL+EH  A
Sbjct:   714 SLRDGLSGKN-GVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTA 772

Query:   633 KLSDYGLSIVSED------INSVGGKQE--DPNSWEMTKLED--DVFSFGFMLLESVAGP 682
             K++D+GLS +  D         V G     DP  +   +L +  DV+ FG ++LE + G 
Sbjct:   773 KVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGK 832

Query:   683 SVAARKGQFLQE---ELDSLNSQEGRQRLVDP-VVMATXXXXXXXXXXXXANKCICSESW 738
             S   R    ++E   ++D   +    Q L+D  ++  +            A +C+  E  
Sbjct:   833 SPIDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGV 892

Query:   739 SRPSFEDILWNLQ 751
             +RP+  +++  L+
Sbjct:   893 NRPTMSEVVQELE 905

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019863 AT1G79620 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 91/308 (29%), Positives = 152/308 (49%)

Query:   463 GSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT 522
             G+  L   R F+ EELK+ TNNF +S+ +G G YGK+YKG L++G  VAI+         
Sbjct:   616 GAPQLKGARWFSYEELKKITNNFSVSSELGYGGYGKVYKGMLQDGHMVAIKRAQQGSTQG 675

Query:   523 VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT 582
                            H +LV L+G C + G +         LVYE+MSNG+ +  ++  +
Sbjct:   676 GLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQ--------ILVYEYMSNGSLKDSLTGRS 727

Query:   583 PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-I 641
              G  L+W  RL V +G A+ + +LH    P   +  VK+ NILL+E+  AK++D+GLS +
Sbjct:   728 -GITLDWKRRLRVALGSARGLAYLHELADPPIIHRDVKSTNILLDENLTAKVADFGLSKL 786

Query:   642 VSE----DINS-VGGKQE--DPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFL 692
             VS+     +++ V G     DP  +   KL +  DV+SFG +++E +        KG+++
Sbjct:   787 VSDCTKGHVSTQVKGTLGYLDPEYYTTQKLTEKSDVYSFGVVMMELITAKQ-PIEKGKYI 845

Query:   693 QEELDS-LNSQE----GRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDIL 747
               E+   +N  +    G +  +D  +               A KC+   +  RP+  +++
Sbjct:   846 VREIKLVMNKSDDDFYGLRDKMDRSLRDVGTLPELGRYMELALKCVDETADERPTMSEVV 905

Query:   748 WNLQYAAQ 755
               ++   Q
Sbjct:   906 KEIEIIIQ 913

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
 Identities = 85/290 (29%), Positives = 143/290 (49%)

Query:   475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXX 534
             L ++ EAT++F    I+G+G +G +YK  L    +VA++ L  +K    R          
Sbjct:   907 LGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLG 966

Query:   535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG--KVLNWSER 592
                HP+LV LLG+C        ++  K+ LVYE+M NG+   H   N  G  +VL+WS+R
Sbjct:   967 KVKHPNLVSLLGYC-------SFSEEKL-LVYEYMVNGSL-DHWLRNQTGMLEVLDWSKR 1017

Query:   593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVS---EDINS 648
             L + +G A+ + FLH G IP   +  +K +NILL+     K++D+GL+ ++S     +++
Sbjct:  1018 LKIAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLARLISACESHVST 1077

Query:   649 V-GGK--QEDPNSWEMTKL--EDDVFSFGFMLLESVAG--PSVAARK----GQFLQEELD 697
             V  G      P   +  +   + DV+SFG +LLE V G  P+    K    G  +   + 
Sbjct:  1078 VIAGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQ 1137

Query:   698 SLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDIL 747
              +N  +    ++DP++++             A  C+      RP+  D+L
Sbjct:  1138 KINQGKAVD-VIDPLLVSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVL 1186

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 282 (104.3 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
 Identities = 82/294 (27%), Positives = 139/294 (47%)

Query:   474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV-RNXXXXXXX 532
             T +++ +AT NF    I+G+G +G +YK  L  G  VAI+ L    ++   R        
Sbjct:   991 TADDILKATENFSKVHIIGDGGFGTVYKAALPEGRRVAIKRLHGGHQFQGDREFLAEMET 1050

Query:   533 XXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSE 591
                  HP+LV LLG+C+ G  R        FL+YE+M NG+    +       + L W +
Sbjct:  1051 IGKVKHPNLVPLLGYCVCGDER--------FLIYEYMENGSLEMWLRNRADALEALGWPD 1102

Query:   592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI--------VS 643
             RL + +G A+ + FLH G +P   +  +K++NILL+E+   ++SD+GL+         VS
Sbjct:  1103 RLKICLGSARGLAFLHHGFVPHIIHRDMKSSNILLDENFEPRVSDFGLARIISACETHVS 1162

Query:   644 EDINSVGGKQEDPNSWEM-TKLEDDVFSFGFMLLESVAG-PSVAARK---GQFLQEELDS 698
              DI    G         M +  + DV+SFG ++LE + G P     +   G  L   +  
Sbjct:  1163 TDIAGTFGYIPPEYGLTMKSTTKGDVYSFGVVMLELLTGRPPTGQEEVQGGGNLVGWVRW 1222

Query:   699 LNSQEGRQRLVDPVV-MATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQ 751
             + ++  +  L DP + +++            A  C   E + RP+  +++  L+
Sbjct:  1223 MIARGKQNELFDPCLPVSSVWREQMARVLAIARDCTADEPFKRPTMLEVVKGLK 1276

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

TAIR|locus:2084016 AT3G53590 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
 Identities = 78/233 (33%), Positives = 116/233 (49%)

Query:   464 SEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV 523
             S  +   + F+  EL +ATN FD S ++G GSYGK+YKG L N T VAI+    +   + 
Sbjct:   593 SREIKGVKKFSFVELSDATNGFDSSTLIGRGSYGKVYKGILSNKTEVAIKRGEETSLQSE 652

Query:   524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
             +             H +LV L+G+  D        + +  LVYE+M NGN R  +S N  
Sbjct:   653 KEFLNEIDLLSRLHHRNLVSLIGYSSD--------IGEQMLVYEYMPNGNVRDWLSANA- 703

Query:   584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
                L++S R  V +G AK + +LHT   P   +  +KT+NILL+    AK++D+GLS ++
Sbjct:   704 ADTLSFSMRSHVALGSAKGILYLHTEANPPVIHRDIKTSNILLDCQLHAKVADFGLSRLA 763

Query:   644 EDINSVGGKQE-------------DPNSWEMTKL--EDDVFSFGFMLLESVAG 681
                    G+               DP  +   +L    DV+SFG +LLE + G
Sbjct:   764 PAFGEGDGEPAHVSTVVRGTPGYLDPEYFMTQQLTVRSDVYSFGVVLLELLTG 816

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2181017 AT5G01950 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 8.2e-40, Sum P(2) = 8.2e-40
 Identities = 99/332 (29%), Positives = 158/332 (47%)

Query:   450 LTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTS 509
             ++  R  S+A+ L S G+   R F+ +EL EAT++F  S ++G G YGK+Y+G L + T 
Sbjct:   595 ISRRRSSSKASLLNS-GI---RGFSFKELAEATDDFSSSTLVGRGGYGKVYRGVLSDNTV 650

Query:   510 VAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFM 569
              AI+          +             H +LV L+G+C      D+ +  +  LVYEFM
Sbjct:   651 AAIKRADEGSLQGEKEFLNEIELLSRLHHRNLVSLIGYC------DEES--EQMLVYEFM 702

Query:   570 SNGNFRTHISENTPGKV-LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE 628
             SNG  R  +S    GK  L++  R+ V +G AK + +LHT   P  F+  +K +NILL+ 
Sbjct:   703 SNGTLRDWLSAK--GKESLSFGMRIRVALGAAKGILYLHTEANPPVFHRDIKASNILLDP 760

Query:   629 HRIAKLSDYGLSIVS------EDINS-----VGGKQE--DPNSWEMTKLED--DVFSFGF 673
             +  AK++D+GLS ++      ED+       V G     DP  +   KL D  DV+S G 
Sbjct:   761 NFNAKVADFGLSRLAPVLEDEEDVPKHVSTVVRGTPGYLDPEYFLTHKLTDKSDVYSIGV 820

Query:   674 MLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCI 733
             + LE + G   A   G+ +  E+ +   ++    L+D   M              A +C 
Sbjct:   821 VFLELLTGMH-AISHGKNIVREVKTAEQRDMMVSLIDKR-MEPWSMESVEKFAALALRCS 878

Query:   734 CSESWSRPSFEDILWNLQYAAQVQETADNEQR 765
                   RP   +++  L+  + +Q + D E R
Sbjct:   879 HDSPEMRPGMAEVVKELE--SLLQASPDRETR 908

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.3e-39, P = 1.3e-39
 Identities = 173/665 (26%), Positives = 283/665 (42%)

Query:   129 GIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDS 188
             G  G +P  +  L+ L  LDLS   + G VP ++S +  +Q + L  N F+  +P  F S
Sbjct:   487 GFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSS 546

Query:   189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXX-XXXXXXXXXXX 247
             L SL ++++ +N  +G  P +   +  L  L LS N I                      
Sbjct:   547 LVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSN 606

Query:   248 XXXXXXP----KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIF 303
                   P    +LPR L +  L  N+ SGEIP +  Q + L  L +  N L G+ P +  
Sbjct:   607 RLMGHIPADLSRLPR-LKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFS 665

Query:   304 SLPNISDLNLASNKFSGSLPKNLNC-GGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR 362
              L N++ ++L+ N  +G +P +L      LV+F++S+N L G +P+ L +  +    +F 
Sbjct:   666 GLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINN-TSEFS 724

Query:   363 GNC-LSSNVQNQHPESYCFEVRTERNQAGSKNXXXXXXXXXXXXXXXXXXAFGFLVVCRR 421
             GN  L     N+  ES   E + ++ +                       A G  ++   
Sbjct:   725 GNTELCGKPLNRRCESSTAEGKKKKRKM---------------ILMIVMAAIGAFLLSL- 768

Query:   422 YCPRCTSEQHLL--HKSVQDNSATGFS--SEVLTNA--RYVSEAAKLGSE-GLPACRSF- 473
             +C  C     LL   K ++  S TG    S   T+A  R  S  ++  +E G P    F 
Sbjct:   769 FC--CFYVYTLLKWRKKLKQQSTTGEKKRSPGRTSAGSRVRSSTSRSSTENGEPKLVMFN 826

Query:   474 ---TLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXX 530
                TL E  EAT  FD   ++    YG L+K    +G  ++IR LP+             
Sbjct:   827 NKITLAETIEATRQFDEENVLSRTRYGLLFKANYNDGMVLSIRRLPNGSLLNENLFKKEA 886

Query:   531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLN 588
                    H ++  L G+     G  D  +    LVY++M NGN  T + E  +  G VLN
Sbjct:   887 EVLGKVKHRNITVLRGYY---AGPPDLRL----LVYDYMPNGNLSTLLQEASHQDGHVLN 939

Query:   589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--------- 639
             W  R  + +G+A+ + FLH        +  +K  N+L +    A +SD+GL         
Sbjct:   940 WPMRHLIALGIARGLGFLHQS---NMVHGDIKPQNVLFDADFEAHISDFGLDRLTIRSPS 996

Query:   640 --SIVSEDINSVGGKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL 696
               ++ +  I ++G    +   S E+T+ E D++SFG +LLE + G     R   F Q+E 
Sbjct:   997 RSAVTANTIGTLGYVSPEATLSGEITR-ESDIYSFGIVLLEILTGK----RPVMFTQDE- 1050

Query:   697 DSLN-----SQEGR-QRLVDPVVMATXXXXXXXXXXXXANK----CICSESWSRPSFEDI 746
             D +       Q G+   L++P ++                K    C  ++   RP+  D+
Sbjct:  1051 DIVKWVKKQLQRGQVTELLEPGLLELDPESSEWEEFLLGIKVGLLCTATDPLDRPTMSDV 1110

Query:   747 LWNLQ 751
             ++ L+
Sbjct:  1111 VFMLE 1115

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XV000279 hypothetical protein (737 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	766
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-30
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-23
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-22
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-21
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	8e-21
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-20
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-19
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-19
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-18
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-15
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	7e-15
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	9e-15
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-14
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	4e-14
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-13
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	9e-13
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-12
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-11
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	6e-11
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	8e-11
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	9e-11
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	1e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	7e-10
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-09
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	3e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-09
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-09
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-09
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-09
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	8e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	9e-09
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-08
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-08
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-08
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	2e-08
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-08
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-08
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-08
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	6e-08
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	6e-08
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	7e-08
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-08
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	8e-08
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	8e-08
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-07
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	4e-07
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	4e-07
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	6e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	6e-07
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	7e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	7e-07
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	8e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	9e-07
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-06
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-06
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-06
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	2e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-06
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	3e-06
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	5e-06
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	5e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	6e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	7e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	8e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	9e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	9e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	2e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-05
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	2e-05
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-05
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-05
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	4e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	4e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	5e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	5e-05
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	5e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	7e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	9e-05
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	1e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-04
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	2e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	2e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	4e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-04
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	5e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	6e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	7e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	7e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	8e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	8e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	9e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	9e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.001
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.001
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	0.001
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	0.001
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	0.002
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	0.002
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.002
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	0.003
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	0.003
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.003
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	0.003
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	0.003
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.003
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.003
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.003
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.004
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  144 bits (366), Expect = 1e-35
 Identities = 173/663 (26%), Positives = 280/663 (42%), Gaps = 86/663 (12%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L +  +L VL L +  + G +P+ +    +L  L L SN L G +P  +     L+ + L
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
            DN F+  +P+ F  LP + FL + NN L G   S    + +L  L L++N   G LPD 
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471

Query: 234 SSLGSLNVLNLSDNKLDSNLPKLPRGL--VMAF-LSNNSFSGEIPKQYGQLNQLQQLDMS 290
                L  L+LS N+    +P+    L  +M   LS N  SGEIP +     +L  LD+S
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 291 FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCL 350
            N L G  P +   +P +S L+L+ N+ SG +PKNL     LV  +IS+N L G LPS  
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591

Query: 351 S----NESDKRVVKFRGN---CLSSNVQNQHPESYCFEVRTERNQAGSKNVGKLVGIIVG 403
           +    N S        GN   C         P   C  VR       + +    +   +G
Sbjct: 592 AFLAINAS-----AVAGNIDLCGGDTTSGLPP---CKRVRK------TPSWWFYITCTLG 637

Query: 404 VLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATG----FSSEVLTNARYVSEA 459
             +++ L+AFGF+ +  R         +L  K V++   T     F S+V          
Sbjct: 638 AFLVLALVAFGFVFIRGR--------NNLELKRVENEDGTWELQFFDSKVS--------- 680

Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK 519
                      +S T+ ++  +        ++  G  G  YKG+        +  +    
Sbjct: 681 -----------KSITINDILSSLKE---ENVISRGKKGASYKGKSIKNGMQFV--VKEIN 724

Query: 520 KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS 579
                      D + KL+HP++V L+G C    G         +L++E++   N    +S
Sbjct: 725 DVNSIPSSEIAD-MGKLQHPNIVKLIGLCRSEKG--------AYLIHEYIEGKN----LS 771

Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN----EHRIAKLS 635
           E      L+W  R  + IG+AKA++FLH    P      +    I+++     H    L 
Sbjct: 772 EVLRN--LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLP 829

Query: 636 DYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVA-ARKG--QFL 692
               +     I+S     E   + ++T+ + D++ FG +L+E + G S A A  G    +
Sbjct: 830 GLLCTDTKCFISSAYVAPETRETKDITE-KSDIYGFGLILIELLTGKSPADAEFGVHGSI 888

Query: 693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIV--ISIANKCICSESWSRPSFEDILWNL 750
            E      S       +DP +    S+    IV  +++A  C  ++  +RP   D+L  L
Sbjct: 889 VEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948

Query: 751 QYA 753
           + A
Sbjct: 949 ESA 951

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  137 bits (346), Expect = 3e-33
 Identities = 113/372 (30%), Positives = 174/372 (46%), Gaps = 33/372 (8%)

Query: 10  LLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYP-KQLEIWINHGADFCYISSSTQVNI 68
            L+ + + LF L    L + + ++LL  +  +  P K L  W N  AD C     T  N 
Sbjct: 11  YLIFMLFFLF-LNFSMLHAEELELLLSFKSSINDPLKYLSNW-NSSADVCLWQGITCNNS 68

Query: 69  --------------------TCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSID 108
                                 +  +I  + +  ++ S     D F ++++    N S +
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 109 SFVTTLAR--LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMV 166
           +F  ++ R  + +L  L L +  + G +P+ I    SL+ LDL  N L G +P  ++ + 
Sbjct: 129 NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 167 KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
            L+ L L  N     IP     + SL ++ +  N L+G  P  I  +++L+ LDL  N +
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 227 SGSLPDLSSLGSLNVLN---LSDNKLDSNLPKLP---RGLVMAFLSNNSFSGEIPKQYGQ 280
           +G +P  SSLG+L  L    L  NKL   +P      + L+   LS+NS SGEIP+   Q
Sbjct: 249 TGPIP--SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN 340
           L  L+ L +  N   G  P A+ SLP +  L L SNKFSG +PKNL     L   D+S N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 341 KLTGGLPSCLSN 352
            LTG +P  L +
Sbjct: 367 NLTGEIPEGLCS 378

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (332), Expect = 2e-31
 Identities = 96/272 (35%), Positives = 142/272 (52%), Gaps = 8/272 (2%)

Query: 82  GDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRL 141
           G+ P+++G+F      +  L  N  +     +L  LTSL  L+L S  + G +P ++ ++
Sbjct: 154 GEIPNDIGSFSSLKVLD--LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 142 YSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNK 201
            SL+++ L  N L G +P +I  +  L  L L  N     IP+   +L +L +L +  NK
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 202 LAGPFPSSIQRISTLSDLDLSKNAISGSLPDL-SSLGSLNVLNLSDNKLDSNLP----KL 256
           L+GP P SI  +  L  LDLS N++SG +P+L   L +L +L+L  N     +P     L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 257 PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
           PR  V+   SN  FSGEIPK  G+ N L  LD+S N L G  P  + S  N+  L L SN
Sbjct: 332 PRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 317 KFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS 348
              G +PK+L     L    + +N  +G LPS
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (319), Expect = 6e-30
 Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 27/268 (10%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
           ++L  L +L+ L L    + G +P  I  L  L  LDLS N L G +P  +  +  L+ L
Sbjct: 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
            L  N F   IP    SLP L  L + +NK +G  P ++ + + L+ LDLS N ++G +P
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 232 D-LSSLGSLNVLNLSDNKLDSNLPK---LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQL 287
           + L S G+L  L L  N L+  +PK     R L    L +NSFSGE+P ++ +L  +  L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433

Query: 288 DMSFNALRG--------MPP---------------PAIFSLPNISDLNLASNKFSGSLPK 324
           D+S N L+G        MP                P  F    + +L+L+ N+FSG++P+
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493

Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSN 352
            L    +L+   +S NKL+G +P  LS+
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSS 521

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 29/200 (14%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCI 549
           GEG +G +Y  R  + G  VAI+ +      ++    LR +++L KL HP++V L G   
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFE 61

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH-T 608
           D         N ++LV E+   G+ +  + EN     L+  E L +L+ + + +++LH  
Sbjct: 62  DE--------NHLYLVMEYCEGGSLKDLLKENEGK--LSEDEILRILLQILEGLEYLHSN 111

Query: 609 GVIPGFFNNR-VKTNNILLNE-HRIAKLSDYGLSIVSEDINSVGGKQEDPNSW---EMTK 663
           G+I     +R +K  NILL+  +   KL+D+GLS +     S+        ++   E+  
Sbjct: 112 GII-----HRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLL 166

Query: 664 LED------DVFSFGFMLLE 677
            +       D++S G +L E
Sbjct: 167 GKGYYSEKSDIWSLGVILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 97.6 bits (244), Expect = 1e-22
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 46/214 (21%)

Query: 492 GEGSYGKLYKGRLENG----TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLG 546
           GEG++G++YKG+L+      T VA++ L        R   L+   ++ KL HP++V LLG
Sbjct: 4   GEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLG 63

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP------GKVLNWSERLAVLIGVA 600
            C +           ++LV E+M  G+   ++ ++ P         L+  + L+  I +A
Sbjct: 64  VCTEEE--------PLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIA 115

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
           K +++L         + +         N L+ E  + K+SD+GLS  +  +D        
Sbjct: 116 KGMEYLA--------SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGG 167

Query: 654 EDPNSW---EMTKLED-------DVFSFGFMLLE 677
           + P  W   E   L+D       DV+SFG +L E
Sbjct: 168 KLPIRWMAPES--LKDGIFTSKSDVWSFGVLLWE 199

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 93.8 bits (234), Expect = 2e-21
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 37/206 (17%)

Query: 492 GEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLL 545
           GEG++G++YKG L          VA++ L            LR   ++ KL HP++V LL
Sbjct: 8   GEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLL 67

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C +           + +V E+M  G+   ++ +N P K L+ S+ L+  + +A+ +++
Sbjct: 68  GVCTEEEP--------LMIVMEYMPGGDLLDYLRKNRP-KELSLSDLLSFALQIARGMEY 118

Query: 606 LHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW-- 659
           L +   I     +R +   N L+ E+ + K+SD+GLS  +  +D   V G +  P  W  
Sbjct: 119 LESKNFI-----HRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKL-PIRWMA 172

Query: 660 -EMTKLED-------DVFSFGFMLLE 677
            E   L++       DV+SFG +L E
Sbjct: 173 PES--LKEGKFTSKSDVWSFGVLLWE 196

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 92.2 bits (230), Expect = 8e-21
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 38/206 (18%)

Query: 492 GEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLL 545
           GEG++G++YKG+L+         VA++ L            LR   ++ KL HP++V LL
Sbjct: 8   GEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLL 67

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C +           +++V E+M  G+  +++ +N     L+ S+ L+  + +A+ +++
Sbjct: 68  GVCTEEE--------PLYIVMEYMEGGDLLSYLRKN--RPKLSLSDLLSFALQIARGMEY 117

Query: 606 LHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW-- 659
           L +   I     +R +   N L+ E+ + K+SD+GLS  +  +D     G +  P  W  
Sbjct: 118 LESKNFI-----HRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKL-PIRWMA 171

Query: 660 -EMTKLED-------DVFSFGFMLLE 677
            E   L++       DV+SFG +L E
Sbjct: 172 PES--LKEGKFTSKSDVWSFGVLLWE 195

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 90.7 bits (226), Expect = 3e-20
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 24/155 (15%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCI 549
           GEGS+GK+Y  R  + G  VAI+ +   K    R   LR + +L KL+HP++V L     
Sbjct: 8   GEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFE 67

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VAKAVQFLH 607
           D         +K++LV E+   G+    + +         SE  A      +  A+++LH
Sbjct: 68  DE--------DKLYLVMEYCEGGDLFDLLKKRGR-----LSEDEARFYLRQILSALEYLH 114

Query: 608 T-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           + G++     +R +K  NILL+E    KL+D+GL+
Sbjct: 115 SKGIV-----HRDLKPENILLDEDGHVKLADFGLA 144

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 87.9 bits (219), Expect = 2e-19
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 37/206 (17%)

Query: 492 GEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLK--LR-LDLLAKLRHPHLVC 543
           GEG++G++YKG L        T VA++ L   +  +    +  L    ++ KL HP++V 
Sbjct: 8   GEGAFGEVYKGTLKGDGEGTETKVAVKTLK--EGASEEEREEFLEEASIMKKLSHPNIVR 65

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
           LLG C  G          +++V E+M  G+    + ++  G+ L   + L + + +AK +
Sbjct: 66  LLGVCTQGE--------PLYIVTEYMPGGDLLDFLRKH--GEKLTLKDLLQMALQIAKGM 115

Query: 604 QFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW 659
           ++L +   +     +R +   N L+ E+ + K+SD+GLS  I  +D     G  + P  W
Sbjct: 116 EYLESKNFV-----HRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKW 170

Query: 660 ---EMTK-----LEDDVFSFGFMLLE 677
              E  K      + DV+SFG +L E
Sbjct: 171 MAPESLKDGKFTSKSDVWSFGVLLWE 196

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 46/214 (21%)

Query: 490 IMGEGSYGKLYKGRLEN-GTSVAIRCLP-SSKKYTVRNLKLR-LDLLAKLRHPHLVCLLG 546
            +G GS+G +YK + +  G  VA++ L   S+K        R + +L +L HP++V L+ 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
              D         + ++LV E+   G+   ++S   P   L+  E   + + + + +++L
Sbjct: 66  AFEDK--------DHLYLVMEYCEGGDLFDYLSRGGP---LSEDEAKKIALQILRGLEYL 114

Query: 607 HT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSV--------------- 649
           H+ G+I     +R +K  NILL+E+ + K++D+GL+      +S                
Sbjct: 115 HSNGII-----HRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEV 169

Query: 650 --GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
             GG    P        + DV+S G +L E + G
Sbjct: 170 LLGGNGYGP--------KVDVWSLGVILYELLTG 195

Length = 260

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 43/218 (19%)

Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRN-LKLRLDLLAKLRHPHLVC 543
           +GEG++GK+YKG L       + TSVAI+ L  + +  V+   +   +L++ L+HP++VC
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWS 590
           LLG C               +++E++++G+    +  N+P                L+ S
Sbjct: 73  LLGVCTKE--------QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCS 124

Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINS 648
           + L + I +A  +++L +     F +  +   N L+ E    K+SD+GLS  I S D   
Sbjct: 125 DFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYR 181

Query: 649 VGGKQEDPNSWEMT---------KLEDDVFSFGFMLLE 677
           V  K   P  W M            E D++SFG +L E
Sbjct: 182 VQSKSLLPVRW-MPPEAILYGKFTTESDIWSFGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               + A +G+G +G +  G    G  VA++CL        +       ++  LRHP+LV
Sbjct: 6   KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLV 63

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAK 601
            LLG  + G          +++V E+M+ G+   ++   + G+ V+  +++L   + V +
Sbjct: 64  QLLGVVLQGNP--------LYIVTEYMAKGSLVDYL--RSRGRAVITLAQQLGFALDVCE 113

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW-- 659
            +++L       F +  +   N+L++E  +AK+SD+GL+          GK   P  W  
Sbjct: 114 GMEYLEE---KNFVHRDLAARNVLVSEDLVAKVSDFGLA-KEASQGQDSGKL--PVKWTA 167

Query: 660 -EMTKL-----EDDVFSFGFMLLE 677
            E  +      + DV+SFG +L E
Sbjct: 168 PEALREKKFSTKSDVWSFGILLWE 191

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 75.2 bits (185), Expect = 7e-15
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 43/273 (15%)

Query: 485 FDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           F +   +G G +G++++G  +N   VAI+ L S      ++ +  +  L +LRH HL+ L
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAV 603
              C  G          V+++ E M  G+        +P G+VL  +  + +   VA+ +
Sbjct: 68  FAVCSVG--------EPVYIITELMEKGSL--LAFLRSPEGQVLPVASLIDMACQVAEGM 117

Query: 604 QFLHTGVIPGFFNNRVKTN----NILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNS 658
            +L          N +  +    NIL+ E  + K++D+GL+ ++ ED+     K+  P  
Sbjct: 118 AYLEE-------QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKK-IPYK 169

Query: 659 WEMTK--------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD 710
           W   +         + DV+SFG +L E           GQ        +N+ E   ++  
Sbjct: 170 WTAPEAASHGTFSTKSDVWSFGILLYEMFT-------YGQVPYP---GMNNHEVYDQITA 219

Query: 711 PVVMATSSLESLSIVISIANKCICSESWSRPSF 743
              M     +    +  I  +C  +E   RPSF
Sbjct: 220 GYRMP-CPAKCPQEIYKIMLECWAAEPEDRPSF 251

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 75.2 bits (185), Expect = 9e-15
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 51/221 (23%)

Query: 491 MGEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKL----RLDLLAKLRHPH 540
           +GEG++GK++ G   +         VA++ L   K+    + +       +LL   +H +
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTL---KETASNDARKDFEREAELLTNFQHEN 69

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN----FRTH-------ISENTPGKVLNW 589
           +V   G C +G            +V+E+M +G+     R+H        S ++P   L  
Sbjct: 70  IVKFYGVCTEGD--------PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL 121

Query: 590 SERLAVLIGVAKAVQFL---HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSE 644
           S+ L + + +A  + +L   H      F +  + T N L+    + K+ D+G+S  + + 
Sbjct: 122 SQLLQIAVQIASGMVYLASQH------FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTT 175

Query: 645 DINSVGGKQEDPNSW---EMTK-----LEDDVFSFGFMLLE 677
           D   VGG    P  W   E         E DV+SFG +L E
Sbjct: 176 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWE 216

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 35/201 (17%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           G+G +G++YK R    G  VAI+ +    K     +   + +L K +HP++V   G  + 
Sbjct: 9   GKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK 68

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-G 609
                     ++++V EF S G+ +  + ++T    L  S+   V   + K +++LH+ G
Sbjct: 69  KD--------ELWIVMEFCSGGSLKD-LLKSTNQT-LTESQIAYVCKELLKGLEYLHSNG 118

Query: 610 VIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSED----INSVGGKQEDPNSW---EM 661
           +I     +R +K  NILL      KL D+GLS    D       VG        W   E+
Sbjct: 119 II-----HRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPY-----WMAPEV 168

Query: 662 TKLED-----DVFSFGFMLLE 677
              +      D++S G   +E
Sbjct: 169 INGKPYDYKADIWSLGITAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 39/215 (18%)

Query: 491 MGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           +GEG++GK++     N         VA++ L  + +   ++ +   +LL  L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGN----FRTH--------ISENTPGKVLNWSER 592
            G C +G          + +V+E+M +G+     R+H          E+     L   + 
Sbjct: 73  YGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQM 124

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
           LA+   +A  + +L +     F +  + T N L+ +  + K+ D+G+S  I S D   VG
Sbjct: 125 LAIASQIASGMVYLAS---LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 181

Query: 651 GKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           G+   P  W             E D++SFG +L E
Sbjct: 182 GRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWE 216

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 29/176 (16%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
           FD+   +GEGSYG +YK    E G  VAI+ +P   +  ++ +   + +L +   P++V 
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPV--EEDLQEIIKEISILKQCDSPYIVK 62

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
             G               +++V E+   G+    +      K L   E  A+L    K +
Sbjct: 63  YYGSYFKN--------TDLWIVMEYCGAGSVSDIM--KITNKTLTEEEIAAILYQTLKGL 112

Query: 604 QFLHTGVIPGFFNNR-----VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE 654
           ++LH        +N+     +K  NILLNE   AKL+D+G   VS  +     K+ 
Sbjct: 113 EYLH--------SNKKIHRDIKAGNILLNEEGQAKLADFG---VSGQLTDTMAKRN 157

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 69.3 bits (169), Expect = 9e-13
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 37/221 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKL 536
           +N  +   +GEG++GK++     N         VA++ L  +     ++     +LL  L
Sbjct: 5   HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 64

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN----FRTH------ISENTPGKV 586
           +H H+V   G C++G        + + +V+E+M +G+     R H      ++E      
Sbjct: 65  QHEHIVKFYGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAE 116

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSE 644
           L  S+ L +   +A  + +L +     F +  + T N L+ E+ + K+ D+G+S  + S 
Sbjct: 117 LTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYST 173

Query: 645 DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           D   VGG    P  W             E DV+S G +L E
Sbjct: 174 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWE 214

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 37/183 (20%)

Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYT--VRNLKLRLDLLAKLRHPH 540
           N+ +  ++G G++G +YKG  LE G  VAI+ +   K     ++++   +DLL  L+HP+
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA------ 594
           +V  +G             + ++++ E+  NG+ R  I +  P     + E L       
Sbjct: 61  IVKYIGSIETS--------DSLYIILEYAENGSLRQIIKKFGP-----FPESLVAVYVYQ 107

Query: 595 VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYG----LSIVSEDINS 648
           VL G+A    +LH  GVI     +R +K  NIL  +  + KL+D+G    L+ VS+D  S
Sbjct: 108 VLQGLA----YLHEQGVI-----HRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDAS 158

Query: 649 VGG 651
           V G
Sbjct: 159 VVG 161

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 52/218 (23%)

Query: 487 MSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLA------KL 536
           +  ++G G +G++ +GRL    +    VAI+ L +    +    K RLD L       + 
Sbjct: 8   IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAG--SSD---KQRLDFLTEASIMGQF 62

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNK---VFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            HP+++ L G            V K   V ++ E+M NG+    + EN  GK     + +
Sbjct: 63  DHPNIIRLEG-----------VVTKSRPVMIITEYMENGSLDKFLREND-GK-FTVGQLV 109

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---- 649
            +L G+A  +++L       + +  +   NIL+N + + K+SD+GLS   ED  +     
Sbjct: 110 GMLRGIASGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTK 166

Query: 650 GGKQEDPNSWEMTKLE----------DDVFSFGFMLLE 677
           GGK   P  W  T  E           DV+SFG ++ E
Sbjct: 167 GGKI--PIRW--TAPEAIAYRKFTSASDVWSFGIVMWE 200

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 40/216 (18%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD------LLAKLRHPHLVCL 544
           +GEG++GK++     N +    + L + K      L  R D      LL  L+H H+V  
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 72

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV-------------LNWSE 591
            G C DG        + + +V+E+M +G+    +  + P  +             L  S+
Sbjct: 73  YGVCGDG--------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 124

Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSV 649
            L +   +A  + +L +     F +  + T N L+  + + K+ D+G+S  + S D   V
Sbjct: 125 MLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRV 181

Query: 650 GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           GG    P  W             E DV+SFG +L E
Sbjct: 182 GGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 41/275 (14%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRL----DLLAKLRHPHLVCLLG 546
           +G+G++G +YKG L+  T VA++   + +     +LK +     ++L +  HP++V L+G
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVK---TCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIG 59

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
            C+            +++V E +  G+  T +        L   + L + +  A  +++L
Sbjct: 60  VCVQK--------QPIYIVMELVPGGSLLTFL--RKKKNRLTVKKLLQMSLDAAAGMEYL 109

Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-INSV-GGKQEDPNSWEMTK- 663
            +       +  +   N L+ E+ + K+SD+G+S   E  I +V  G ++ P  W   + 
Sbjct: 110 ES---KNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEA 166

Query: 664 -------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT 716
                   E DV+S+G +L E+ +                  +++Q+ R+R+     M  
Sbjct: 167 LNYGRYTSESDVWSYGILLWETFSLGDTPYP----------GMSNQQTRERIESGYRMPA 216

Query: 717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
             L    I   +  +C   +  +RPSF +I   LQ
Sbjct: 217 PQLCPEEIY-RLMLQCWAYDPENRPSFSEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 66.3 bits (160), Expect = 2e-11
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 39/288 (13%)

Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD---LLAKLRHPH 540
           ++ +   +GEGS+G++Y  R      VA++ L    +   + ++  L    +LA L HP 
Sbjct: 1   SYRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 541 LVC-LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            +  L     D           ++LV E++  G+    + +      L+ SE L +L  +
Sbjct: 59  NIVKLYDFFQDE--------GSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQI 110

Query: 600 AKAVQFLHT-GVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLSIVSEDINSVGGKQE--- 654
             A+++LH+ G+I       +K  NILL+   R+ KL D+GL+ +  D  S         
Sbjct: 111 LSALEYLHSKGIIHRD----IKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPS 166

Query: 655 ---------DPNSWEMTKLED-----DVFSFGFMLLESVAG-PSVAARKGQFLQEELDSL 699
                     P       L       D++S G  L E + G P     K      +   +
Sbjct: 167 TSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKI 226

Query: 700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
             +     L  P+  +   L S +    +  K +  +  +R S    L
Sbjct: 227 ILELPTPSLASPLSPSNPELISKAA-SDLLKKLLAKDPKNRLSSSSDL 273

Length = 384

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 22/198 (11%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G G +G++++G   N T VA++ L          L     ++ KLRHP L+ L   C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLA-EAQIMKKLRHPKLIQLYAVCTL 72

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +++V E M  G+   ++     G+ L   + + +   VA  + +L    
Sbjct: 73  E--------EPIYIVTELMKYGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEA-- 121

Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDI-NSVGG-----KQEDPNSWEMTK 663
              + +  +   N+L+ E+ I K++D+GL+ ++ EDI  +  G     K   P +    +
Sbjct: 122 -QNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR 180

Query: 664 --LEDDVFSFGFMLLESV 679
             ++ DV+SFG +L E V
Sbjct: 181 FSIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 30/88 (34%), Positives = 52/88 (59%)

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           L L + G+ G +P+ I +L  L+ ++LS N + G++PP + ++  L+ L L  N FN +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 183 PNWFDSLPSLTFLSMRNNKLAGPFPSSI 210
           P     L SL  L++  N L+G  P+++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 47/202 (23%), Positives = 99/202 (49%), Gaps = 29/202 (14%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRL----DLLAKLRHPHLVCLL 545
           ++G+G++G+++KG L++ T VA++   + K+   + LK++      +L +  HP++V L+
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVK---TCKEDLPQELKIKFLSEARILKQYDHPNIVKLI 58

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C             +++V E +  G+F + + +      L   + +   +  A  + +
Sbjct: 59  GVCTQR--------QPIYIVMELVPGGDFLSFLRKKK--DELKTKQLVKFALDAAAGMAY 108

Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-INSVGGKQEDPNSWEMTKL 664
           L +       +  +   N L+ E+ + K+SD+G+S   +D I S  G ++ P  W   + 
Sbjct: 109 LES---KNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEA 165

Query: 665 --------EDDVFSFGFMLLES 678
                   E DV+S+G +L E+
Sbjct: 166 LNYGRYSSESDVWSYGILLWET 187

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 68/290 (23%), Positives = 120/290 (41%), Gaps = 59/290 (20%)

Query: 491 MGEGSYGKLYKGRLEN-----GTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           +GEG +GK+   R +      G  VA++ L  S ++    + +  +++L  L H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVA 600
            G C   GGR       + L+ E++ +G+ R ++  +       ++L +S +      + 
Sbjct: 72  KGVCEKPGGRS------LRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQ------IC 119

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV---SEDINSVGGKQEDPN 657
           K + +L +     + +  +   NIL+    + K+SD+GL+ V    +D   V    E P 
Sbjct: 120 KGMDYLGS---QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI 176

Query: 658 SW---EMTKL-----EDDVFSFGFMLLE--SVAGPS----------VAARKGQFLQEELD 697
            W   E  +        DV+SFG  L E  +   PS          +   +GQ +   L 
Sbjct: 177 FWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRL- 235

Query: 698 SLNSQEGRQRLVDPVVMATSSLESL-SIVISIANKCICSESWSRPSFEDI 746
            L   +  +RL  P         S    V  +   C  +E   RPSF D+
Sbjct: 236 -LELLKEGERLPRP--------PSCPDEVYDLMKLCWEAEPQDRPSFADL 276

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 62.7 bits (152), Expect = 9e-11
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 42/276 (15%)

Query: 491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRL----DLLAKLRHPHLVCLL 545
           +G G++G+++ GRL  + T VA++   S ++    +LK +      +L +  HP++V L+
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVK---SCRETLPPDLKAKFLQEARILKQYSHPNIVRLI 59

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C             +++V E +  G+F T +   T G  L   E + ++   A  +++
Sbjct: 60  GVCTQK--------QPIYIVMELVQGGDFLTFL--RTEGPRLKVKELIQMVENAAAGMEY 109

Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED--INSVGGKQEDPNSWEMTK 663
           L +       +  +   N L+ E  + K+SD+G+S   ED    S GG ++ P  W   +
Sbjct: 110 LESKHC---IHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPE 166

Query: 664 L--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA 715
                    E DV+SFG +L E+ +  +V             +L++Q+ R+ +   V + 
Sbjct: 167 ALNYGRYSSESDVWSFGILLWEAFSLGAVP----------YANLSNQQTREAIEQGVRLP 216

Query: 716 TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
              L     V  +  +C   +   RPSF  +   LQ
Sbjct: 217 CPEL-CPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 51/222 (22%)

Query: 491 MGEGSYGKLYKGRL-----ENGTSVAIRCLP---SSKKYTVRNLKLRLDLLAKLRHPHLV 542
           +GE ++GK+YKG L     ++   VAI+ L    + +++     +    L+A+L HP++V
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWG--EFQQEASLMAELHHPNIV 70

Query: 543 CLLGHCIDGGGRDDYAVNK---VFLVYEFMSNGNFRTHISENTP-----------GKV-- 586
           CLLG            V +   V +++E+++ G+    +   +P           G V  
Sbjct: 71  CLLG-----------VVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKS 119

Query: 587 -LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVS 643
            L+  + L + I +A  +++L +     F +  +   NIL+ E    K+SD GLS  I S
Sbjct: 120 SLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREIYS 176

Query: 644 EDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE 677
            D   V  K   P  W   +         + D++SFG +L E
Sbjct: 177 ADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 66/298 (22%), Positives = 113/298 (37%), Gaps = 67/298 (22%)

Query: 490 IMGEGSYGKLYKGRL-------ENGTSVAIRCLPSSKKYTVRNLKLRL----DLLAKLRH 538
            +G G++G++Y+G              VA++ L   +K      K        L++   H
Sbjct: 2   FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTL---RKGATDQEKKEFLKEAHLMSNFNH 58

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKVLNWSERLA 594
           P++V LLG C+             +++ E M  G+  +++     E     +L   E L 
Sbjct: 59  PNIVKLLGVCLLN--------EPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLD 110

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-----RIAKLSDYGLS--IVSEDIN 647
           + + VAK   +L       F +  +   N L++E      R+ K+ D+GL+  I   D  
Sbjct: 111 ICLDVAKGCVYLEQ---MHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYY 167

Query: 648 SVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL 699
              G+   P  W   +         + DV+SFG ++ E +             Q+   +L
Sbjct: 168 RKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILT----------LGQQPYPAL 217

Query: 700 NSQEGRQ------RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           N+QE  Q      RL  P       +  L         C   +   RP+F+ I   LQ
Sbjct: 218 NNQEVLQHVTAGGRLQKP-ENCPDKIYQL------MTNCWAQDPSERPTFDRIQEILQ 268

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 31/173 (17%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           ++G GS+G +Y     + G  +A++   L    +  +  L+  + +L+ L+HP++V   G
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYG 66

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA------VLIGVA 600
              D    +   +N +FL  E++S G+  + + +   GK+    E +       +L G+ 
Sbjct: 67  SERD---EEKNTLN-IFL--EYVSGGSLSSLLKKF--GKL---PEPVIRKYTRQILEGL- 114

Query: 601 KAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG 651
               +LH+ G++     +R +K  NIL++   + KL+D+G +    DI +  G
Sbjct: 115 ---AYLHSNGIV-----HRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEG 159

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 25/129 (19%)

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLG 237
           F++T   WF     +  L + N  L G  P+ I ++  L  ++LS N+I G++P   SLG
Sbjct: 411 FDSTKGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP--PSLG 463

Query: 238 SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
           S+  L + D                  LS NSF+G IP+  GQL  L+ L+++ N+L G 
Sbjct: 464 SITSLEVLD------------------LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 298 PPPAIFSLP 306
            P A+    
Sbjct: 506 VPAALGGRL 514

Length = 623

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 63/274 (22%), Positives = 124/274 (45%), Gaps = 42/274 (15%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
            +G+G +G +  G    G  VA++C+ +    T +       ++ +LRH +LV LLG  +
Sbjct: 13  TIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV 69

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAKAVQFLHT 608
           +  G        +++V E+M+ G+   ++   + G+ VL     L   + V +A+++L  
Sbjct: 70  EEKG-------GLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEYLEA 120

Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL- 664
                F +  +   N+L++E  +AK+SD+GL+     ++D   +  K   P +    K  
Sbjct: 121 N---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFS 177

Query: 665 -EDDVFSFGFMLLE-----SVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS 718
            + DV+SFG +L E      V  P +  +      E+   +++ +G      PVV     
Sbjct: 178 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDG----CPPVVY---- 229

Query: 719 LESLSIVISIANKCICSESWSRPSFEDILWNLQY 752
                    +  +C   ++ +RPSF  +   L++
Sbjct: 230 --------DVMKQCWHLDAATRPSFLQLREQLEH 255

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 59.7 bits (144), Expect = 9e-10
 Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 42/269 (15%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G+G +G+++ G     T VAI+ L          L+    ++ KLRH  LV L      
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQ-EAQIMKKLRHDKLVPL------ 66

Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V EFM  G+    + E   GK L   + + +   +A  + ++ 
Sbjct: 67  ------YAVVSEEPIYIVTEFMGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIE 119

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  ++  NIL+ ++ + K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 120 R---MNYIHRDLRAANILVGDNLVCKIADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 175

Query: 664 ------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS 717
                 ++ DV+SFG +L E V    V    G   +E L+ +   E   R+  P      
Sbjct: 176 LYGRFTIKSDVWSFGILLTELVTKGRV-PYPGMVNREVLEQV---ERGYRMPCP----QG 227

Query: 718 SLESLSIVISIANKCICSESWSRPSFEDI 746
             ESL     +   C   +   RP+FE I
Sbjct: 228 CPESLH---ELMKLCWKKDPDERPTFEYI 253

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 136 DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
           D     + ++ L L +  L G +P  IS +  LQ++ L  N     IP    S+ SL  L
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSL----NVLNLSDN 247
            +  N   G  P S+ ++++L  L+L+ N++SG +P  ++LG         N +DN
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP--AALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 43/165 (26%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK-------LR-LDLLAKLRHPHLV 542
           GEG+YG +YK R  + G  VA+      KK  + N +       LR + LL +L+HP++V
Sbjct: 8   GEGTYGVVYKARDKKTGEIVAL------KKIRLDNEEEGIPSTALREISLLKELKHPNIV 61

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VLIGVA 600
            LL           +   K++LV+E+    + + ++ +       N  + +   +L G+A
Sbjct: 62  KLLDVI--------HTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLA 112

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
               + H+        +R+     K  NIL+N   + KL+D+GL+
Sbjct: 113 ----YCHS--------HRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 34/161 (21%)

Query: 492 GEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRN-----LKLRLDLLAKLRHPHLVCLL 545
           G+GS+GK+   R ++ G   A++ L   KK  ++           ++L+++ HP +V L 
Sbjct: 2   GKGSFGKVLLVRKKDTGKLYAMKVL--KKKKIIKRKEVEHTLTERNILSRINHPFIVKLH 59

Query: 546 GHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VA 600
                      YA     K++LV E+   G   +H+S     K   +SE  A      + 
Sbjct: 60  -----------YAFQTEEKLYLVLEYAPGGELFSHLS-----KEGRFSEERARFYAAEIV 103

Query: 601 KAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            A+++LH+ G+I       +K  NILL+     KL+D+GL+
Sbjct: 104 LALEYLHSLGIIYRD----LKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 30/202 (14%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G G +G+++ G     T VA++ L          L+    ++ KLRH  LV L   C +
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQ-EAQIMKKLRHDKLVQLYAVCSE 72

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +++V E+MS G+    +     GK L   + + +   +A+ + +L +  
Sbjct: 73  E--------EPIYIVTEYMSKGSLLDFLKSGE-GKKLRLPQLVDMAAQIAEGMAYLES-- 121

Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED---INSVGGKQEDPNSWEMTKLE-- 665
              + +  +   NIL+ E+ + K++D+GL+ + ED       G K   P  W  T  E  
Sbjct: 122 -RNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKF--PIKW--TAPEAA 176

Query: 666 --------DDVFSFGFMLLESV 679
                    DV+SFG +L E V
Sbjct: 177 NYGRFTIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 70/288 (24%), Positives = 119/288 (41%), Gaps = 50/288 (17%)

Query: 491 MGEGSYGKLYKG--RLENGTS----VAIRCLP-SSKKYTVRNLKLRLDLLAKLRHPHLVC 543
           +G G++G++Y+G  R  +G +    VA++ LP S  +    +  +   +++K  H ++V 
Sbjct: 14  LGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVR 73

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV----LNWSERLAVLIGV 599
           L+G   +   R        F++ E M+ G+ ++ + EN P       L   + L     V
Sbjct: 74  LIGVSFERLPR--------FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDV 125

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKLSDYGLS--IVSEDINSVGGKQE 654
           AK  ++L       F +  +   N LL      R+AK++D+G++  I        GG+  
Sbjct: 126 AKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAM 182

Query: 655 DPNSWE----------MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG 704
            P  W            +K   DV+SFG +L E +         G+  QE ++ +    G
Sbjct: 183 LPIKWMPPEAFLDGIFTSK--TDVWSFGVLLWE-IFSLGYMPYPGRTNQEVMEFVT---G 236

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY 752
             RL  P             V  I   C       RP+F  IL  +QY
Sbjct: 237 GGRLDPPKGCPGP-------VYRIMTDCWQHTPEDRPNFATILERIQY 277

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 42/267 (15%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G+G +G+++ G     T VAI+ L          L+    ++ KLRH  LV L      
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ-EAQVMKKLRHEKLVQL------ 66

Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+MS G+    +     GK L   + + +   +A  + ++ 
Sbjct: 67  ------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVE 119

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 120 R---MNYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 175

Query: 664 ------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS 717
                 ++ DV+SFG +L E +         G   +E LD +   E   R+  P      
Sbjct: 176 LYGRFTIKSDVWSFGILLTE-LTTKGRVPYPGMVNREVLDQV---ERGYRMPCP-PECPE 230

Query: 718 SLESLSIVISIANKCICSESWSRPSFE 744
           SL  L        +C   E   RP+FE
Sbjct: 231 SLHDLMC------QCWRKEPEERPTFE 251

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 27/175 (15%)

Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL 536
           L + T  F++  ++GEG+YGK+YK R  + G  VAI+ +   +      +K   ++L K 
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEE-IKEEYNILRKY 59

Query: 537 -RHPHLVCLLGHCI--DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT--PGKVLNWSE 591
             HP++    G  I  +  G DD    +++LV E    G+  T + +     GK L   E
Sbjct: 60  SNHPNIATFYGAFIKKNPPGNDD----QLWLVMELCGGGSV-TDLVKGLRKKGKRLK-EE 113

Query: 592 RLAVLI-GVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
            +A ++    + + +LH         N+V     K  NILL ++   KL D+G+S
Sbjct: 114 WIAYILRETLRGLAYLH--------ENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 33/163 (20%)

Query: 489 AIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY------TVRNLKLRLDLLAKLRHPHL 541
           A +GEG+YG++YK R  + G  VA++ +    +        +R +KL    L KLRHP++
Sbjct: 5   AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKL----LQKLRHPNI 60

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMS---NGNFRTHISENTPGKVLNWSERLAVLIG 598
           V L                 +++V+E+M     G   +   + T  ++  + ++L     
Sbjct: 61  VRLKEIVTS------KGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLL---- 110

Query: 599 VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGL 639
             + +Q+LH+ G++     +R +K +NIL+N   + KL+D+GL
Sbjct: 111 --EGLQYLHSNGIL-----HRDIKGSNILINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAI-RCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGH 547
           +GEG+YG +YK R    G  VAI +     +   +    LR + LL +L HP+++ LL  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL--AVLIGVAKAVQF 605
               G         ++LV+EFM      T + +    +     E L  + L  + + + F
Sbjct: 67  FRHKG--------DLYLVFEFM-----DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAF 113

Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
            H+    G  +  +K  N+L+N   + KL+D+GL
Sbjct: 114 CHSH---GILHRDLKPENLLINTEGVLKLADFGL 144

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 56.7 bits (138), Expect = 8e-09
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 45/168 (26%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSS------KKYTVRNLKLRLDLLAKLRHPHLVCL 544
           G+GS+GK+Y  R   +G    ++ +  S      ++  +  +K+    L KL HP+++  
Sbjct: 9   GKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKI----LKKLNHPNIIKY 64

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE-NTPGK------VLNWSERLAVLI 597
                + G        K+ +V E+   G+    I +    GK      +L+W       +
Sbjct: 65  YESFEEKG--------KLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDW------FV 110

Query: 598 GVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
            +  A+++LH+         ++     K  NI L  + + KL D+G+S
Sbjct: 111 QLCLALKYLHS--------RKILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 44/280 (15%)

Query: 487 MSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLL 545
           M   +G G YG++Y+G  +    +VA++ L       V        ++ +++HP+LV LL
Sbjct: 10  MKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLVQLL 68

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI-----GVA 600
           G C     R+       +++ EFM+ GN   ++ E       N  E  AV++      ++
Sbjct: 69  GVCT----REP----PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQIS 114

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSW 659
            A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W
Sbjct: 115 SAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW 171

Query: 660 EMTK--------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP 711
              +        ++ DV++FG +L E +A   ++   G  L +  + L   E   R+  P
Sbjct: 172 TAPESLAYNKFSIKSDVWAFGVLLWE-IATYGMSPYPGIDLSQVYELL---EKGYRMERP 227

Query: 712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
                        V  +   C       RPSF +I    +
Sbjct: 228 EGCPPK-------VYELMRACWQWNPSDRPSFAEIHQAFE 260

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 65/294 (22%), Positives = 116/294 (39%), Gaps = 51/294 (17%)

Query: 487 MSAIMGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRN-LKLRLDLLAKLRHPH 540
              ++GEG +GK  LY     N   G  VA++ L         +  K  +++L  L H +
Sbjct: 8   KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN 67

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V   G C + GG+       + L+ E++  G+ R ++ ++     LN ++ L     + 
Sbjct: 68  IVKYKGCCSEQGGK------GLQLIMEYVPLGSLRDYLPKHK----LNLAQLLLFAQQIC 117

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV---SEDINSVGGKQEDPN 657
           + + +LH+     + +  +   N+LL+  R+ K+ D+GL+       +   V    + P 
Sbjct: 118 EGMAYLHS---QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV 174

Query: 658 SWEMTK--------LEDDVFSFGFMLLESVA--GPSVAARK----------GQFLQEELD 697
            W   +           DV+SFG  L E +       +  K          GQ     L 
Sbjct: 175 FWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLI 234

Query: 698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            L   E   RL  P        E    V  +   C  +E+  RP+F  ++  L+
Sbjct: 235 EL--LERGMRLPCP---KNCPQE----VYILMKNCWETEAKFRPTFRSLIPILK 279

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 34/172 (19%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRC---------LPSSKKYTVRNLKLRLDLLA 534
           ++  A +GEG+YG +YK R L  G  VA++          +P S   T+R + L L  L 
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLS---TLREIAL-LKQLE 56

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
              HP++V LL  C    G       K+ LV+E +   +  T++S   P   L   E + 
Sbjct: 57  SFEHPNIVRLLDVCH---GPRTDRELKLTLVFEHVDQ-DLATYLS-KCPKPGLP-PETIK 110

Query: 595 VLIG-VAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
            L+  + + V FLH+        +R+     K  NIL+      K++D+GL+
Sbjct: 111 DLMRQLLRGVDFLHS--------HRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 23/197 (11%)

Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           +  I+GEG +G + +G    G  VA++ +      T +       ++ KL H +LV LLG
Sbjct: 10  LGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLG 66

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL-NWSERLAVLIGVAKAVQF 605
             +  G         +++V E MS GN    +   T G+ L +  + L   + VA+ +++
Sbjct: 67  VILHNG---------LYIVMELMSKGNLVNFL--RTRGRALVSVIQLLQFSLDVAEGMEY 115

Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE---DINSVGGKQEDPNSWEMT 662
           L +       +  +   NIL++E  +AK+SD+GL+ V     D + +  K   P + +  
Sbjct: 116 LES---KKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHK 172

Query: 663 KL--EDDVFSFGFMLLE 677
           K   + DV+S+G +L E
Sbjct: 173 KFSSKSDVWSYGVLLWE 189

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G G +G ++ G       VAI+ +      +  +      ++ KL HP LV L G C +
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTI-REGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE 70

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                    + + LV+EFM +G    ++         +    L + + V + + +L +  
Sbjct: 71  R--------SPICLVFEFMEHGCLSDYL--RAQRGKFSQETLLGMCLDVCEGMAYLESS- 119

Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
                +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 120 --NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSK 177

Query: 665 ---EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLES 721
              + DV+SFG ++ E V        + +   E ++++N+     RL  P + + S    
Sbjct: 178 YSSKSDVWSFGVLMWE-VFSEGKTPYENRSNSEVVETINAG---FRLYKPRLASQS---- 229

Query: 722 LSIVISIANKCICSESWSRPSFEDILWNL 750
              V  +   C       RPSF  +L  L
Sbjct: 230 ---VYELMQHCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 73/309 (23%), Positives = 126/309 (40%), Gaps = 55/309 (17%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV----RNLKLRLDLLAKL-R 537
           N+     ++GEG++G++ K R++         +   K+Y      R+    L++L KL  
Sbjct: 7   NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 66

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
           HP+++ LLG C   G         ++L  E+  +GN      ++ + E  P         
Sbjct: 67  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 118

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+  + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   E
Sbjct: 119 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 175

Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
             +    G+   P  W         +     DV+S+G +L E  S+ G          L 
Sbjct: 176 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 233

Query: 694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA 753
           E+L          RL  P       L     V  +  +C   + + RPSF  IL +L   
Sbjct: 234 EKLPQ------GYRLEKP-------LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280

Query: 754 AQVQETADN 762
            + ++T  N
Sbjct: 281 LEERKTYVN 289

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
           L N    G IP    +L  LQ +++S N++RG  PP++ S+ ++  L+L+ N F+GS+P+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 325 NLNCGGKLVFFDISN---NKLTGGLPSCL 350
           +L   G+L    I N   N L+G +P+ L
Sbjct: 485 SL---GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 21/163 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAI-RCLPSSKKYTVRNLKLR-LDLLAKLRHP 539
             ++   ++GEGSYG + K +  E G  VAI + L S     V+ + +R + +L +LRH 
Sbjct: 1   EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHE 60

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS--ENTPGKVLNWSERLAVLI 597
           +LV L+               +++LV+EF+ +    T +   E  P   L+ S     L 
Sbjct: 61  NLVNLIEVF--------RRKKRLYLVFEFVDH----TVLDDLEKYPNG-LDESRVRKYLF 107

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            + + ++F H+  I    +  +K  NIL+++  + KL D+G +
Sbjct: 108 QILRGIEFCHSHNI---IHRDIKPENILVSQSGVVKLCDFGFA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 79/290 (27%), Positives = 125/290 (43%), Gaps = 65/290 (22%)

Query: 491 MGEGSYGKLYKG-RLENG-------TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           +G+G++ K++KG R E G       T V ++ L  S +    +      ++++L H HLV
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLV 62

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
              G C+ G         +  +V E++  G+  T++ +N    ++N S +L V   +A A
Sbjct: 63  LNYGVCVCGD--------ESIMVQEYVKFGSLDTYLKKN--KNLINISWKLEVAKQLAWA 112

Query: 603 VQFLHTGVIPGFFNNRVKTNNILL--NEHRIA------KLSDYGLSI-------VSEDIN 647
           + FL    +    +  V   N+LL   E R        KLSD G+SI       + E I 
Sbjct: 113 LHFLEDKGLT---HGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIP 169

Query: 648 SVGGK-QEDPNSWEMTKLEDDVFSFGFMLLESVAG---PSVA---ARKGQFLQEELDSLN 700
            V  +  E+P +     L  D +SFG  L E  +G   P  A    +K QF         
Sbjct: 170 WVPPECIENPQN---LSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFY-------- 218

Query: 701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL 750
             E R +L  P          L+ +I   N+C+  E   RPSF  I+ +L
Sbjct: 219 --EDRHQLPAP------KWTELANLI---NQCMDYEPDFRPSFRAIIRDL 257

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 490 IMGEGSYGK--LYKGRLENGTSVAIR-----CLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           ++G+G++G+  LY+ R E+ + V  +      L   ++    N    + +L+ L+HP+++
Sbjct: 7   VLGKGAFGEATLYR-RTEDDSLVVWKEVNLTRLSEKERRDALN---EIVILSLLQHPNII 62

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
               H +D         N + +  E+ + G     I     G++      L  L  +  A
Sbjct: 63  AYYNHFMDD--------NTLLIEMEYANGGTLYDKIVR-QKGQLFEEEMVLWYLFQIVSA 113

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           V ++H     G  +  +KT NI L +  + KL D+G+S
Sbjct: 114 VSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGIS 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 29/199 (14%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPS---SKKYTVRNLKLRLDLLAKLRHPHLVCLLGH 547
           +G G +G ++ G+      VAI+ +     S+   +   K+    + KL HP+LV L G 
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKV----MMKLSHPNLVQLYGV 67

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
           C             +F+V E+M+NG    ++ E      L     L +   V +A+++L 
Sbjct: 68  CTKQR--------PIFIVTEYMANGCLLNYLRERK--GKLGTEWLLDMCSDVCEAMEYLE 117

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGG-----KQEDPNSWE 660
           +    GF +  +   N L+ E  + K+SD+GL+  ++ +   S  G     K   P  ++
Sbjct: 118 SN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFD 174

Query: 661 MTKL--EDDVFSFGFMLLE 677
            ++   + DV+SFG ++ E
Sbjct: 175 YSRFSSKSDVWSFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 49/234 (20%)

Query: 484 NFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLP-SSKKYTVRNLKLRLDLLAKL 536
           N  +   +GEG +GK+ K            T+VA++ L  ++    +R+L    +LL ++
Sbjct: 1   NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQV 60

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKVLNWSERL 593
            HPH++ L G C   G         + L+ E+   G+ R+ + E+    P  + +   R 
Sbjct: 61  NHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRN 112

Query: 594 ----------AVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS 635
                     A+ +G        +++ +Q+L         +  +   N+L+ E R  K+S
Sbjct: 113 SSYLDNPDERALTMGDLISFAWQISRGMQYLAE---MKLVHRDLAARNVLVAEGRKMKIS 169

Query: 636 DYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESV 679
           D+GLS  +  ED      K   P  W         +   + DV+SFG +L E V
Sbjct: 170 DFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 223

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 27/169 (15%)

Query: 484 NFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNL--KLRLD------LLA 534
           +F +   +G+GSYG +YK  RL +    A+      K+  + ++  K R D      +LA
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYAL------KEVDLGSMSQKEREDAVNEIRILA 54

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERL 593
            + HP+++      +DG        NK+ +V E+   G+    IS+     K++   E  
Sbjct: 55  SVNHPNIISYKEAFLDG--------NKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIW 106

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
            + I + + +Q LH   I    +  +K+ NILL  + + K+ D G+S V
Sbjct: 107 RIFIQLLRGLQALHEQKI---LHRDLKSANILLVANDLVKIGDLGISKV 152

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 3e-08
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 31/163 (19%)

Query: 213 ISTLSDLDLSKNAISGSL-PDLSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSN 267
            S +  +DLS   ISG +   +  L  +  +NLS+N+L   +P         L    LSN
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 268 NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN 327
           N+F+G IP                   RG       S+PN+  L+L++N  SG +P ++ 
Sbjct: 128 NNFTGSIP-------------------RG-------SIPNLETLDLSNNMLSGEIPNDIG 161

Query: 328 CGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
               L   D+  N L G +P+ L+N +    +    N L   +
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Length = 968

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 28/204 (13%)

Query: 491 MGEGSYGKL----YKGRLEN-GTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           +GEG +GK+    Y    +N G  VA++ L P S    + +LK  +++L  L H ++V  
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
            G C + GG      N + L+ EF+ +G+ + ++  N     +N  ++L   + + K + 
Sbjct: 72  KGICTEDGG------NGIKLIMEFLPSGSLKEYLPRNK--NKINLKQQLKYAVQICKGMD 123

Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED---INSVGGKQEDPNSWEM 661
           +L +     + +  +   N+L+      K+ D+GL+   E      +V    + P  W  
Sbjct: 124 YLGS---RQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYA 180

Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG  L E
Sbjct: 181 PECLIQSKFYIASDVWSFGVTLYE 204

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 43/172 (25%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY-------TVRNLKLR-LDLL 533
           N +++  ++GEG+YG + K R    G  VAI      KK+        V+   LR + +L
Sbjct: 1   NKYEVLGVVGEGAYGVVLKCRNKATGEIVAI------KKFKESEDDEDVKKTALREVKVL 54

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG------KVL 587
            +LRH ++V L       G        +++LV+E++        +  +  G      +  
Sbjct: 55  RQLRHENIVNLKEAFRRKG--------RLYLVFEYVER-TLLELLEASPGGLPPDAVRSY 105

Query: 588 NWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            W         + +A+ + H+  +I    +  +K  NIL++E  + KL D+G
Sbjct: 106 IWQ--------LLQAIAYCHSHNII----HRDIKPENILVSESGVLKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 54.3 bits (130), Expect = 6e-08
 Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 44/209 (21%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +G G +G+++ G   N T VA++ L P +   +V+      +L+  L+H  LV L     
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLKPGT--MSVQAFLEEANLMKTLQHDKLVRL----- 66

Query: 550 DGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVL-----NWSERLAVLIGVA 600
                  YAV      ++++ E+M+ G+    +  +  GKVL     ++S ++A  +   
Sbjct: 67  -------YAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYI 119

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNS 658
           +   ++H           ++  N+L++E  + K++D+GL+ V ED N    ++  + P  
Sbjct: 120 ERKNYIH---------RDLRAANVLVSESLMCKIADFGLARVIED-NEYTAREGAKFPIK 169

Query: 659 WEMTK--------LEDDVFSFGFMLLESV 679
           W   +        ++ DV+SFG +L E V
Sbjct: 170 WTAPEAINFGSFTIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 48/188 (25%)

Query: 468 PACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL 526
             CRS T          F+    +GEG+YG +Y+ R   +G  VA+      KK  + N 
Sbjct: 1   GRCRSVT---------EFEKLNRIGEGTYGIVYRARDTTSGEIVAL------KKVRMDNE 45

Query: 527 K-------LR-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG------ 572
           +       LR + LL  LRHP++V L    + G       ++ +FLV E+          
Sbjct: 46  RDGIPISSLREITLLLNLRHPNIVELK-EVVVGK-----HLDSIFLVMEYCEQDLASLLD 99

Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA 632
           N  T  SE         S+   +++ + + +Q+LH   I    +  +K +N+LL +    
Sbjct: 100 NMPTPFSE---------SQVKCLMLQLLRGLQYLHENFI---IHRDLKVSNLLLTDKGCL 147

Query: 633 KLSDYGLS 640
           K++D+GL+
Sbjct: 148 KIADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 80/311 (25%)

Query: 491 MGEGSYGKLYKGRLEN---------------GTS--VAIRCLPSSKKYTVRNLKLR-LDL 532
           +GEG +G+++   + N               G    VA++ L        RN  L+ + +
Sbjct: 13  LGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKI 72

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------------- 579
           L++L+ P+++ LLG C+D    +D     + ++ E+M NG+    +S             
Sbjct: 73  LSRLKDPNIIRLLGVCVD----ED----PLCMITEYMENGDLNQFLSSHHLDDKEENGND 124

Query: 580 ---ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
                     +++S  L V + +A  +++L +     F +  + T N L+ E+   K++D
Sbjct: 125 AVPPAHCLPAISYSSLLHVALQIASGMKYLSS---LNFVHRDLATRNCLVGENLTIKIAD 181

Query: 637 YGLS--IVSEDINSVGGKQEDP---NSWE---MTKL--EDDVFSFGFMLLE--------- 677
           +G+S  + + D   + G+   P    +WE   M K     DV++FG  L E         
Sbjct: 182 FGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQP 241

Query: 678 --SVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICS 735
              +    V    G+F ++        +GRQ  +         L  L +      +C   
Sbjct: 242 YGELTDEQVIENAGEFFRD--------QGRQVYLFRPPPCPQGLYELML------QCWSR 287

Query: 736 ESWSRPSFEDI 746
           +   RPSF DI
Sbjct: 288 DCRERPSFSDI 298

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 36/218 (16%)

Query: 485 FDMSAIMGEGSYGKLYKGRL--ENGTS--VAIRCLPSSKKYTVRNLKLRLDLLAKLR--- 537
             +  I+GEG +G + +G+L  ++G+   VA++ +     +T   ++  L   A ++   
Sbjct: 1   LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLD-IHTYSEIEEFLSEAACMKDFD 59

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI--------SENTPGKVLNW 589
           HP+++ L+G C +           V L   FM +G+  + +         E  P + L  
Sbjct: 60  HPNVMKLIGVCFEASSLQKIPKPMVIL--PFMKHGDLHSFLLYSRLGGLPEKLPLQTL-- 115

Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDIN 647
              L  ++ +A  +++L       F +  +   N +L E     ++D+GLS  I S D  
Sbjct: 116 ---LKFMVDIALGMEYLSN---RNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYY 169

Query: 648 SVGGKQEDPNSW-EMTKLED-------DVFSFGFMLLE 677
             G   + P  W  +  L D       DV++FG  + E
Sbjct: 170 RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWE 207

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 8e-08
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLP-NISDLNLASNKFSGSLP 323
           LS  + SG+I     +L  +Q +++S N L G  P  IF+   ++  LNL++N F+GS+P
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 324 KNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQN 372
           +       L   D+SNN L+G +P+ + + S  +V+   GN L   + N
Sbjct: 136 RGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Length = 968

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 54.6 bits (132), Expect = 8e-08
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 33/174 (18%)

Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK-------LR-LD 531
              ++++   +GEG++G++YK R ++ G  VA+      KK  + N K       LR + 
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVAL------KKILMHNEKDGFPITALREIK 59

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN------GNFRTHISENTPGK 585
           +L KL+HP++V L+   ++   +       V++V  +M +       N    +   T  +
Sbjct: 60  ILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKL---TESQ 116

Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
           +  +  +L  L G+     +LH        +  +K  NIL++   I K++D+GL
Sbjct: 117 IKCYMLQL--LEGI----NYLHEN---HILHRDIKAANILIDNQGILKIADFGL 161

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLL 533
           L  L++    F++  ++G G+YG++YKGR ++ G   AI+ +  ++      +KL +++L
Sbjct: 8   LSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEE-EEIKLEINML 66

Query: 534 AKL-RHPHLVCLLGHCIDGG--GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
            K   H ++    G  I     G DD    +++LV EF   G+  T + +NT G  L   
Sbjct: 67  KKYSHHRNIATYYGAFIKKSPPGHDD----QLWLVMEFCGAGSV-TDLVKNTKGNALKED 121

Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
               +   + + +  LH   +    +  +K  N+LL E+   KL D+G+S
Sbjct: 122 WIAYICREILRGLAHLHAHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 41/155 (26%), Positives = 84/155 (54%), Gaps = 19/155 (12%)

Query: 491 MGEGSYGKLYKGR-LENGTSVA---IRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLL 545
           +GEG+YG +YKGR  + G  VA   IR    S++  V +  +R + LL +L+HP++VCL 
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRL--ESEEEGVPSTAIREISLLKELQHPNIVCLQ 65

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
              +          ++++L++EF+S  + + ++     G+ ++     + L  + + + F
Sbjct: 66  -DVL-------MQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILF 116

Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            H+  +    +  +K  N+L++   + KL+D+GL+
Sbjct: 117 CHSRRV---LHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 25/176 (14%)

Query: 484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHP 539
           +F++  ++G+G++GK+   +  +     A++ +   K   K +VRN+     +L +L HP
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            LV L     D           ++LV + +  G+ R H+S+        +SE        
Sbjct: 61  FLVNLWYSFQDE--------ENMYLVVDLLLGGDLRYHLSQKVK-----FSEEQVKFWIC 107

Query: 600 --AKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGG 651
               A+++LH+ G+I    +  +K +NILL+E     ++D+ ++  V+ D  +   
Sbjct: 108 EIVLALEYLHSKGII----HRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTST 159

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 19/270 (7%)

Query: 72  DNFITELKIIGDKPSNVGNFDGFASANASLSEN-FSIDSFVTTLARLTSLRVLSLVSLGI 130
            + I+ L                     SL  N   + S ++ L  LT+L  L L +  I
Sbjct: 77  PSGISSLDGS--------ENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI 128

Query: 131 WGSLPDKIHRLYS-LEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
              +P  I  L S L+ LDLS N +  S+P  +  +  L+ L L  N   + +P    +L
Sbjct: 129 T-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL 185

Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKL 249
            +L  L +  NK++   P  I+ +S L +LDLS N+I   L  LS+L +L+ L LS+NKL
Sbjct: 186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244

Query: 250 --DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN 307
                       L    LSNN  S  I    G L  L++LD+S N+L     P I  L  
Sbjct: 245 EDLPESIGNLSNLETLDLSNNQIS-SISSL-GSLTNLRELDLSGNSLSN-ALPLIALLLL 301

Query: 308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDI 337
           + +L L       +L   LN          
Sbjct: 302 LLELLLNLLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G G +G+++ G     T VA++ L          L+    ++ KLRH  LV L      
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLE-EAQIMKKLRHDKLVQL------ 66

Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+MS G+    + +   G+ L     + +   VA  + ++ 
Sbjct: 67  ------YAVVSEEPIYIVTEYMSKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIE 119

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  +++ NIL+ +  + K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 120 R---MNYIHRDLRSANILVGDGLVCKIADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 175

Query: 664 ------LEDDVFSFGFMLLESV 679
                 ++ DV+SFG +L E V
Sbjct: 176 LYGRFTIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 47/231 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRN-LKLRLDLLAK 535
           NN +    +G+G++G++++ R       E  T VA++ L       ++   +    L+A+
Sbjct: 5   NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 64

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV--------- 586
             HP++V LLG C  G          + L++E+M+ G+    +   +P            
Sbjct: 65  FDHPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSS 116

Query: 587 ----------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
                     L+ +E+L +   VA  + +L       F +  + T N L+ E+ + K++D
Sbjct: 117 ARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIAD 173

Query: 637 YGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           +GLS  I S D          P  W             E DV+++G +L E
Sbjct: 174 FGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 224

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 41/177 (23%), Positives = 82/177 (46%), Gaps = 31/177 (17%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRL-----DLLAKL 536
           ++F    I+GEGS+  +   +  E     AI+ L   K+  ++  K++      ++L +L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKIL--DKRQLIKEKKVKYVKIEKEVLTRL 58

Query: 537 -RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
             HP ++ L         +D+     ++ V E+  NG    +I      K  +  E+   
Sbjct: 59  NGHPGIIKLYYTF-----QDE---ENLYFVLEYAPNGELLQYIR-----KYGSLDEKCTR 105

Query: 596 LIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINS 648
                +  A+++LH+ G+I     +R +K  NILL++    K++D+G + V +  +S
Sbjct: 106 FYAAEILLALEYLHSKGII-----HRDLKPENILLDKDMHIKITDFGTAKVLDPNSS 157

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 65/302 (21%)

Query: 490 IMGEGSYGKLYKG-RLENGTSV----AIRCL--PSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           ++G G++G +YKG  +  G +V    AI+ L   +  K  V  +   L ++A + HPHLV
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL-IMASMDHPHLV 72

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG----KVLNWSERLAVLIG 598
            LLG C+            + LV + M +G    ++ E+        +LNW       + 
Sbjct: 73  RLLGVCLS---------PTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWC------VQ 117

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----DINSVGGKQE 654
           +AK + +L    +    +  +   N+L+      K++D+GL+ + E    + N+ GGK  
Sbjct: 118 IAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM- 173

Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLE--SVAGPSVAARKGQFLQEELDSLNSQEG 704
            P  W   +         + DV+S+G  + E  +  G       G   +E  D L   E 
Sbjct: 174 -PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY---DGIPTREIPDLL---EK 226

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQ 764
            +RL  P +           V  +  KC   ++ SRP F+++      AA+    A + Q
Sbjct: 227 GERLPQPPICTID-------VYMVMVKCWMIDADSRPKFKEL------AAEFSRMARDPQ 273

Query: 765 RF 766
           R+
Sbjct: 274 RY 275

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 62/275 (22%), Positives = 119/275 (43%), Gaps = 44/275 (16%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPS---SKKYTVRNLKLRLDLLAKLRHPHLVCLLGH 547
           +G G +G +  G+      VAI+ +     S+   +   K+    + KL H  LV L G 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKV----MMKLSHEKLVQLYGV 67

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
           C             +++V E+MSNG    ++ E+  GK    S+ L +   V + + +L 
Sbjct: 68  CTKQ--------RPIYIVTEYMSNGCLLNYLREH--GKRFQPSQLLEMCKDVCEGMAYLE 117

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL 664
           +     F +  +   N L+++    K+SD+GLS   +  E  +SVG K   P  W   ++
Sbjct: 118 S---KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEV 172

Query: 665 --------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT 716
                   + DV++FG ++ E  +            +   +  N+ E  +++   + +  
Sbjct: 173 LLYSKFSSKSDVWAFGVLMWEVYS----------LGKMPYERFNNSETVEKVSQGLRLYR 222

Query: 717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
             L S   V +I   C   ++  RP+F+ +L +++
Sbjct: 223 PHLAS-EKVYAIMYSCWHEKAEERPTFQQLLSSIE 256

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 46/263 (17%)

Query: 510 VAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEF 568
           VA++ L +    T RN  L+ + ++++L++P+++ LLG C+     DD     + ++ E+
Sbjct: 47  VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCV----SDD----PLCMITEY 98

Query: 569 MSNGNFRTHISE-----------NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN 617
           M NG+    +S+           N P   ++ +  L + + +A  +++L +     F + 
Sbjct: 99  MENGDLNQFLSQREIESTFTHANNIPS--VSIANLLYMAVQIASGMKYLAS---LNFVHR 153

Query: 618 RVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDP---NSWEMTKL-----EDD 667
            + T N L+  H   K++D+G+S  + S D   + G+   P    +WE   L       D
Sbjct: 154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASD 213

Query: 668 VFSFGFMLLESVA----GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLS 723
           V++FG  L E        P       Q ++   +   +Q GRQ  +    +  S +  L 
Sbjct: 214 VWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQ-GRQIYLSQTPLCPSPVFKLM 272

Query: 724 IVISIANKCICSESWSRPSFEDI 746
           +      +C   +   RP+F  I
Sbjct: 273 M------RCWSRDIKDRPTFNKI 289

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 20/154 (12%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRN--LKLR-LDLLAKL-RHPHLVCLLG 546
           G+G++G +Y  R  E G  VAI+ +   KK+      + LR +  L KL  HP++V L  
Sbjct: 8   GDGTFGSVYLARNKETGELVAIKKM--KKKFYSWEECMNLREVKSLRKLNEHPNIVKLKE 65

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
              +         ++++ V+E+M  GN    + +   GK  + S   +++  + + +  +
Sbjct: 66  VFREN--------DELYFVFEYM-EGNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHI 115

Query: 607 HTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           H     GFF+  +K  N+L++   + K++D+GL+
Sbjct: 116 HKH---GFFHRDLKPENLLVSGPEVVKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 14/151 (9%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +G+G++GK+YK +  E G   A + + +  +  + +  + +++LA   HP++V LLG   
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAF- 78

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
                  Y   K++++ EF   G     + E   G  L   +   +   + +A+Q+LH+ 
Sbjct: 79  -------YWDGKLWIMIEFCPGGAVDAIMLELDRG--LTEPQIQVICRQMLEALQYLHSM 129

Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            I    +  +K  N+LL      KL+D+G+S
Sbjct: 130 KI---IHRDLKAGNVLLTLDGDIKLADFGVS 157

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 38/172 (22%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY---------TVRNLKLRLDLL 533
            ++    +GEG+Y  +YK R  E G  VAI+ +   ++           +R +K    LL
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIK----LL 56

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPGKVLNW 589
            +L+HP+++ LL    D  G        + LV+EFM   +    I +     TP  + ++
Sbjct: 57  QELKHPNIIGLL----DVFGHKSN----INLVFEFME-TDLEKVIKDKSIVLTPADIKSY 107

Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
                 ++   + +++LH+     +  +R +K NN+L+    + KL+D+GL+
Sbjct: 108 ------MLMTLRGLEYLHS----NWILHRDLKPNNLLIASDGVLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 478 LKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL 536
           L++    F++  ++G G+YG++YKGR ++ G   AI+ +  +       +K  +++L K 
Sbjct: 1   LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-EEIKQEINMLKKY 59

Query: 537 -RHPHLVCLLGHCIDGG--GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
             H ++    G  I     G DD    +++LV EF   G+  T + +NT G  L      
Sbjct: 60  SHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEEWIA 114

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            +   + + +  LH   +    +  +K  N+LL E+   KL D+G+S
Sbjct: 115 YICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 38/217 (17%)

Query: 490 IMGEGSYGKLYKGRLE---NGTSVAIRCLPS-SKKYTVRNLKLRLDLLAKL-RHPHLVCL 544
           ++GEG++G++ +  ++      + AI+ L   + +   R+    L++L KL  HP+++ L
Sbjct: 9   VIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINL 68

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG--------KVLNWSE 591
           LG C + G         +++  E+   GN      ++ + E  P           L   +
Sbjct: 69  LGACENRG--------YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ 120

Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG 651
            L     VA  +Q+L       F +  +   N+L+ E+  +K++D+GLS   E++     
Sbjct: 121 LLQFASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGLS-RGEEVYVKKT 176

Query: 652 KQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
               P  W         +   + DV+SFG +L E V+
Sbjct: 177 MGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 37/208 (17%)

Query: 490 IMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYT---VRNLKLRLDLLAKLRHPHLV 542
           ++G G +G++  GRL+        VAI+ L +   YT    R+      ++ +  HP+++
Sbjct: 11  VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAG--YTEKQRRDFLSEASIMGQFDHPNII 68

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L G               V +V E+M NG+    + ++  G+     + + +L G+A  
Sbjct: 69  HLEGVVTKS--------KPVMIVTEYMENGSLDAFLRKHD-GQ-FTVIQLVGMLRGIASG 118

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQEDPN 657
           +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       + GGK   P 
Sbjct: 119 MKYLSD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI--PI 173

Query: 658 SWEMTKL--------EDDVFSFGFMLLE 677
            W   +           DV+S+G ++ E
Sbjct: 174 RWTAPEAIAYRKFTSASDVWSYGIVMWE 201

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 33/211 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G G +G+++ G     T VAI+ L          L    +L+ +L+HP LV
Sbjct: 6   ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLA-EANLMKQLQHPRLV 64

Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     ++++ E+M NG+    + +   G  L  ++ + +   +
Sbjct: 65  RL------------YAVVTQEPIYIITEYMENGSLVDFL-KTPEGIKLTINKLIDMAAQI 111

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED---P 656
           A+ + F+       + +  ++  NIL++E    K++D+GL+ + ED       +E    P
Sbjct: 112 AEGMAFIER---KNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA--REGAKFP 166

Query: 657 NSWEMTK--------LEDDVFSFGFMLLESV 679
             W   +        ++ DV+SFG +L E V
Sbjct: 167 IKWTAPEAINYGTFTIKSDVWSFGILLTEIV 197

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 52/284 (18%)

Query: 490 IMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNLKLRL---DLLAKLRHPHLV 542
           ++G G +G++ +GRL+        VAI+ L S   YT +  +  L    ++ +  HP+++
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG--YTEKQRRDFLSEASIMGQFDHPNII 68

Query: 543 CLLGHCIDGGGRDDYAVNK---VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L G            V K   V ++ EFM NG   + + +N  G+     + + +L G+
Sbjct: 69  HLEG-----------VVTKSRPVMIITEFMENGALDSFLRQND-GQ-FTVIQLVGMLRGI 115

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------INSVGGK 652
           A  +++L       + +  +   NIL+N + + K+SD+GLS   ED        +S+GGK
Sbjct: 116 AAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGK 172

Query: 653 ----QEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
                  P +    K     DV+S+G ++ E +   S   R    +  + D +N+ E   
Sbjct: 173 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM---SYGERPYWDMSNQ-DVINAIEQDY 228

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL 750
           RL  P+   T +L  L +       C   +  +RP F  I+  L
Sbjct: 229 RLPPPMDCPT-ALHQLML------DCWQKDRNARPKFGQIVSTL 265

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 33/159 (20%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAI-RCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGH 547
           +GEGSYG ++K R  E G  VAI + + S     ++ + LR + +L +L+HP+LV L+  
Sbjct: 9   IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLI-- 66

Query: 548 CIDGGGRDDYAVNKVF-------LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
                        +VF       LV+E+  +     +  E  P  V     +  ++    
Sbjct: 67  -------------EVFRRKRKLHLVFEYCDHTVL--NELEKNPRGVPEHLIK-KIIWQTL 110

Query: 601 KAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
           +AV F H    I    +  VK  NIL+ +    KL D+G
Sbjct: 111 QAVNFCHKHNCI----HRDVKPENILITKQGQIKLCDFG 145

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 34/169 (20%)

Query: 490 IMGEGSYGKLYKGR----LENGTSVAIRCLPSSKKYT--VRN---LKLRLDLLAKLRHPH 540
           ++G+GS+GK++  R     + G   A++ L   KK T  VR+    K+  D+LA++ HP 
Sbjct: 3   VLGQGSFGKVFLVRKITGPDAGQLYAMKVL---KKATLKVRDRVRTKMERDILAEVNHPF 59

Query: 541 LVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV-L 596
           +V L            YA     K++L+ +F+  G+  T +S+    +V+   E +   L
Sbjct: 60  IVKL-----------HYAFQTEGKLYLILDFLRGGDLFTRLSK----EVMFTEEDVKFYL 104

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
             +A A+  LH+    G     +K  NILL+E    KL+D+GLS  S D
Sbjct: 105 AELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 150

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 23/173 (13%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNLKLRLD 531
           K   + FD+   +GEG+YG++YK R  + G  VA++   L + K+      +R +K    
Sbjct: 3   KRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIK---- 58

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYAVNK--VFLVYEFMSNGNFRTHISENTPGKVLNW 589
           +L +L H ++V L     D     D+  +K   +LV+E+M +       S      ++++
Sbjct: 59  ILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLES-----GLVHF 113

Query: 590 SER--LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           SE    + +  + + + + H      F +  +K +NILLN     KL+D+GL+
Sbjct: 114 SEDHIKSFMKQLLEGLNYCHK---KNFLHRDIKCSNILLNNKGQIKLADFGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNLKLRLDLL 533
           LE L + T+ +++   +G+G+YGK+YK    ++G+  A++ L          ++   ++L
Sbjct: 14  LESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVD-EEIEAEYNIL 72

Query: 534 AKL-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
             L  HP++V   G        D     +++LV E  + G+    ++E   G +L   +R
Sbjct: 73  QSLPNHPNVVKFYGMFYKA---DKLVGGQLWLVLELCNGGS----VTELVKG-LLICGQR 124

Query: 593 LA------VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           L       +L G    +Q LH   I    +  VK NNILL      KL D+G+S
Sbjct: 125 LDEAMISYILYGALLGLQHLHNNRI---IHRDVKGNNILLTTEGGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 65/234 (27%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCL---PSSKKYTVRNLKLRLDLL 533
               +   +G+GS+G +Y+G  +        T VAI+ +    S ++        R++ L
Sbjct: 6   EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRE--------RIEFL 57

Query: 534 A------KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SEN 581
                  +    H+V LLG    G            +V E M+ G+ ++++      +EN
Sbjct: 58  NEASVMKEFNCHHVVRLLGVVSTG--------QPTLVVMELMAKGDLKSYLRSRRPEAEN 109

Query: 582 TPG-------KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
            PG       K +  +  +A  +    A +F+H           +   N ++ E    K+
Sbjct: 110 NPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVH---------RDLAARNCMVAEDLTVKI 160

Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
            D+G++  I   D    GGK   P  W M    L+D       DV+SFG +L E
Sbjct: 161 GDFGMTRDIYETDYYRKGGKGLLPVRW-MAPESLKDGVFTTKSDVWSFGVVLWE 213

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 54/230 (23%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKG--RLENGT---SVAIRCL-----PSSKKYTVR 524
           L  LKE     +   ++G G++G +YKG    E       VAI+ L     P + K  + 
Sbjct: 1   LRILKET--ELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILD 58

Query: 525 NLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-- 582
              +    +A + HPH+V LLG C+          ++V L+ + M  G    ++  +   
Sbjct: 59  EAYV----MASVDHPHVVRLLGICLS---------SQVQLITQLMPLGCLLDYVRNHKDN 105

Query: 583 --PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
                +LNW  +      +AK + +L         +  +   N+L+   +  K++D+GL+
Sbjct: 106 IGSQYLLNWCVQ------IAKGMSYLEE---KRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Query: 641 -IVSEDINSV---GGKQEDPNSW---------EMTKLEDDVFSFGFMLLE 677
            ++  D       GGK   P  W           T  + DV+S+G  + E
Sbjct: 157 KLLDVDEKEYHAEGGKV--PIKWMALESILHRIYTH-KSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 27/198 (13%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           +G G +G ++ G+      VAI+ +         +      ++ KL HP LV L G C  
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKAINEGAMSE-EDFIEEAKVMMKLSHPKLVQLYGVCTQ 70

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +++V EFM NG    ++ +   GK L+    L++   V + +++L    
Sbjct: 71  Q--------KPLYIVTEFMENGCLLNYLRQRQ-GK-LSKDMLLSMCQDVCEGMEYLERN- 119

Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
              F +  +   N L++   + K+SD+G++   +  E  +S G K   P  W   ++   
Sbjct: 120 --SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKF--PVKWSPPEVFNF 175

Query: 665 -----EDDVFSFGFMLLE 677
                + DV+SFG ++ E
Sbjct: 176 SKYSSKSDVWSFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 65/283 (22%), Positives = 125/283 (44%), Gaps = 48/283 (16%)

Query: 490 IMGEGSYGKLYKG-RLENGTSVAIRC--LP--------SSKKYTVRNLKLRLDLLAKLRH 538
           ++G+G+YG++Y    +  G  +A++   LP        S +K  V+ L+  ++ L  L H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VL 596
            ++V  LG        +  ++   FL  E++  G+  + +   T G+   + E+L     
Sbjct: 68  LNIVQYLGF---ETTEEYLSI---FL--EYVPGGSIGSCL--RTYGR---FEEQLVRFFT 114

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI--NSVGGKQE 654
             V + + +LH+    G  +  +K +N+L++   I K+SD+G+S  S+DI  N      +
Sbjct: 115 EQVLEGLAYLHS---KGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQ 171

Query: 655 DPNSW---EMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG 704
               W   E+            D++S G ++LE  AG      +  +  EE  +   + G
Sbjct: 172 GSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAG------RRPWSDEEAIAAMFKLG 225

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
            +R   P+    S   S  + +   N C      +RP+  ++L
Sbjct: 226 NKRSAPPIPPDVSMNLS-PVALDFLNACFTINPDNRPTARELL 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 38/169 (22%), Positives = 83/169 (49%), Gaps = 22/169 (13%)

Query: 484 NFDMSAIMGEGSYGKLY--KGRLENGTSV----AIRCLPSSKKYTVRNLKLRLDLLAKLR 537
            +++   +GEGS+GK+Y  K + ++   V     +  +P  +K   +     + LLAK++
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKK---EVILLAKMK 57

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HP++V       + G        ++F+V E+   G+    I+    G + +  + L+  +
Sbjct: 58  HPNIVTFFASFQENG--------RLFIVMEYCDGGDLMKRINRQR-GVLFSEDQILSWFV 108

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLSIVSED 645
            ++  ++ +H   I    +  +K+ NI L+++  +AKL D+G++    D
Sbjct: 109 QISLGLKHIHDRKI---LHRDIKSQNIFLSKNGMVAKLGDFGIARQLND 154

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 59/289 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
           ++ +   ++G+GS G +YK R    G   A++ +        R   LR L  L     P+
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER-LA-VLIG 598
           +V   G     G        ++ +V E+M  G+       +   KV    E  LA +   
Sbjct: 61  VVKCYGAFYKEG--------EISIVLEYMDGGSL-----ADLLKKVGKIPEPVLAYIARQ 107

Query: 599 VAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE 654
           + K + +LHT        + +    K +N+L+N     K++D+G+S V E+        +
Sbjct: 108 ILKGLDYLHTK------RHIIHRDIKPSNLLINSKGEVKIADFGISKVLENT------LD 155

Query: 655 DPNSWEMT-------KLED-------DVFSFGFMLLESVAG--PSVAARKGQFLQEELDS 698
             N++  T       +++        D++S G  LLE   G  P +   +  F  E + +
Sbjct: 156 QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFF-ELMQA 214

Query: 699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           +           P + A              + C+  +   RPS  ++L
Sbjct: 215 ICDGP------PPSLPAEEFSPEF---RDFISACLQKDPKKRPSAAELL 254

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 42/173 (24%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD----------- 531
           NF     +GEG+YG +YK R    G  VA++             K+RLD           
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALK-------------KIRLDTETEGVPSTAI 47

Query: 532 ----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
               LL +L HP++V LL           +  NK++LV+EF+ + + +  + + +P   +
Sbjct: 48  REISLLKELNHPNIVKLLDVI--------HTENKLYLVFEFL-HQDLKKFM-DASPLSGI 97

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
                 + L  + + + F H+  +    +  +K  N+L+N     KL+D+GL+
Sbjct: 98  PLPLIKSYLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 66/288 (22%), Positives = 120/288 (41%), Gaps = 68/288 (23%)

Query: 490 IMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNLKLRLDLLA------KLRHP 539
           ++G G +G++++G L+       +VAI+ L     YT    K R D L+      +  H 
Sbjct: 12  VIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPG--YTE---KQRQDFLSEASIMGQFSHH 66

Query: 540 HLVCLLGHCIDGGGRDDYAVNK---VFLVYEFMSNGNF----RTHISENTPGKVLNWSER 592
           +++ L G            V K     ++ E+M NG      R H  E +  +++     
Sbjct: 67  NIIRLEG-----------VVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLV----- 110

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----IN 647
             +L G+A  +++L       + +  +   NIL+N +   K+SD+GLS V ED       
Sbjct: 111 -GMLRGIAAGMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYT 166

Query: 648 SVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL 699
           + GGK   P  W   +           DV+SFG ++ E ++          F +     +
Sbjct: 167 TSGGKI--PIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMS----------FGERPYWDM 214

Query: 700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           ++ E  + + D   +    ++  S V  +  +C   +   RP F DI+
Sbjct: 215 SNHEVMKAINDGFRLPA-PMDCPSAVYQLMLQCWQQDRARRPRFVDIV 261

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 48/221 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
           ++ +    +G G+ G + K      G  +A++ +       ++   LR LD+L K   P+
Sbjct: 1   DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPY 60

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-------RTHISENTPGKVLNWSERL 593
           +V   G   +           + +  E+M  G+        +  I E   GK+       
Sbjct: 61  IVGFYGAFYNN--------GDISICMEYMDGGSLDKILKEVQGRIPERILGKIAV----- 107

Query: 594 AVLIGVAKAVQFLHT--GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG 651
                V K + +LH    +I    +  VK +NIL+N     KL D+G+S   + +NS+  
Sbjct: 108 ----AVLKGLTYLHEKHKII----HRDVKPSNILVNSRGQIKLCDFGVS--GQLVNSLAK 157

Query: 652 -----------KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
                      ++   N +    ++ D++S G  L+E   G
Sbjct: 158 TFVGTSSYMAPERIQGNDYS---VKSDIWSLGLSLIELATG 195

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 30/213 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRN-LKLRLDLLAK 535
           NN      +G G++GK+ +       + +    VA++ L  +   + R  L   L +++ 
Sbjct: 35  NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSH 94

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           L  H ++V LLG C  GG         + ++ E+   G+    +        L   + L+
Sbjct: 95  LGNHENIVNLLGACTIGG--------PILVITEYCCYGDLLNFLRRKRE-SFLTLEDLLS 145

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGK 652
               VAK + FL +       +  +   N+LL   +I K+ D+GL+  I+++    V G 
Sbjct: 146 FSYQVAKGMAFLAS---KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGN 202

Query: 653 QEDPNSW--------EMTKLEDDVFSFGFMLLE 677
              P  W         +   E DV+S+G +L E
Sbjct: 203 ARLPVKWMAPESIFNCVYTFESDVWSYGILLWE 235

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 28/159 (17%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIR--------CLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
           ++G+G+YG +Y G    G  +A++         L + K+Y    L+  +DLL  L+H ++
Sbjct: 7   VLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEY--EKLQEEVDLLKSLKHVNI 64

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE--NTPGKVLNWSERLAVLIGV 599
           V  LG C+D         N + +  EF+  G+  + ++     P  V     +  +L GV
Sbjct: 65  VQYLGTCLDD--------NTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTK-QILDGV 115

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
           A    +LH   +    +  +K NN++L  + I KL D+G
Sbjct: 116 A----YLHNNCV---VHRDIKGNNVMLMPNGIIKLIDFG 147

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 489 AIMGEGSYGKLYKGR-LENGTSVAIRC---------LPSSKKYTVRNLKLRLDLLAKLRH 538
           A +G G+YG +YK R   +G  VA++          LP S   TVR + L L  L    H
Sbjct: 6   AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLS---TVREVAL-LKRLEAFDH 61

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P++V L+  C     R D    KV LV+E +   + RT++ +  P   L       ++  
Sbjct: 62  PNIVRLMDVC--ATSRTDRET-KVTLVFEHVDQ-DLRTYL-DKVPPPGLPAETIKDLMRQ 116

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             + + FLH   I    +  +K  NIL+      KL+D+GL+
Sbjct: 117 FLRGLDFLHANCI---VHRDLKPENILVTSGGQVKLADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 47/220 (21%)

Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRN-LKLRLDLLAKLRHPHLVC 543
           +GE  +GK+YKG L      E   +VAI+ L    +  +R   K    + ++L+HP++VC
Sbjct: 13  LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVC 72

Query: 544 LLGHCIDGGGRDDYAVNK---VFLVYEFMSNGNFRTHISENTP-------------GKVL 587
           LLG            V K   + +++ + S+ +    +   +P                L
Sbjct: 73  LLG-----------VVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTL 121

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSED 645
             ++ + ++  +A  ++FL +  +    +  + T N+L+ +    K+SD GL   + + D
Sbjct: 122 EPADFVHIVTQIAAGMEFLSSHHV---VHKDLATRNVLVFDKLNVKISDLGLFREVYAAD 178

Query: 646 INSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
              + G    P  W   +        ++ D++S+G +L E
Sbjct: 179 YYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 13/151 (8%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT-VRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           G G+   +Y    L N   VAI+ +   K  T V  L+  +  +++  HP++V      +
Sbjct: 10  GVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFV 69

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
            G        ++++LV  ++S G+    +  + P   L+ +    VL  V K +++LH+ 
Sbjct: 70  VG--------DELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN 121

Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              G  +  +K  NILL E    K++D+G+S
Sbjct: 122 ---GQIHRDIKAGNILLGEDGSVKIADFGVS 149

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 35/221 (15%)

Query: 481 ATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNLKL-RLDLL 533
           A     MS  +G+GS+G +Y+G      + E  T VAI+ +  +     R   L    ++
Sbjct: 4   AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 63

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGKVL 587
            +    H+V LLG    G            ++ E M+ G+ ++++       EN P +  
Sbjct: 64  KEFNCHHVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAP 115

Query: 588 NWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSE 644
              +++  + G +A  + +L+      F +  +   N ++ E    K+ D+G++  I   
Sbjct: 116 PSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 172

Query: 645 DINSVGGKQEDPNSW-EMTKLED-------DVFSFGFMLLE 677
           D    GGK   P  W     L+D       DV+SFG +L E
Sbjct: 173 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 213

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLI 172
            +++L  L+ ++L    I G++P  +  + SLE LDLS N   GS+P  +  +  L+ L 
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 173 LDDNFFNNTIP 183
           L+ N  +  +P
Sbjct: 497 LNGNSLSGRVP 507

Length = 623

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 68/304 (22%)

Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVA---IRCLPSSKKYTVRNLKL 528
           FT E+LK      D+  I G G++G + K     +GT +A   IR     K+   + L +
Sbjct: 1   FTAEDLK------DLGEI-GRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKE--QKRLLM 51

Query: 529 RLDLLAKLRH-PHLVCLLGHCIDGGGRD--------DYAVNKVF-LVYEFMSNGNFRTHI 578
            LD++ +    P++V   G     G  D        D +++K +  VYE       ++ I
Sbjct: 52  DLDVVMRSSDCPYIVKFYGALFREG--DCWICMELMDISLDKFYKYVYE-----VLKSVI 104

Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            E   GK+       AV     KA+ +L   +     +  VK +NILL+ +   KL D+G
Sbjct: 105 PEEILGKI-------AV--ATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFG 153

Query: 639 LSIVSEDINSVGGKQE------------DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAA 686
           +S   + ++S+   ++            DP++ +   +  DV+S G  L E      VA 
Sbjct: 154 IS--GQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYE------VAT 205

Query: 687 RKGQFLQEELDSLNSQEGRQRLV--DPVVMATSSLESLSI-VISIANKCICSESWSRPSF 743
             G+F   + +S+  Q    ++V  DP +++ S     S   ++  N C+  +   RP +
Sbjct: 206 --GKFPYPKWNSVFDQ--LTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKY 261

Query: 744 EDIL 747
           +++L
Sbjct: 262 KELL 265

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 56/171 (32%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD---------------LLAK 535
           GEG+YG +YK R    G  VA++             K+RL+               LL +
Sbjct: 8   GEGTYGVVYKARDKLTGEIVALK-------------KIRLETEDEGVPSTAIREISLLKE 54

Query: 536 LRHPHLVCLLGHCIDGGGRDD--YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           L HP++V LL          D  ++ NK++LV+EF+ + + + ++ +++P   L+     
Sbjct: 55  LNHPNIVRLL----------DVVHSENKLYLVFEFL-DLDLKKYM-DSSPLTGLDPPLIK 102

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGL 639
           + L  + + + + H+        +RV     K  N+L++     KL+D+GL
Sbjct: 103 SYLYQLLQGIAYCHS--------HRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +G+G++GK+YK +  E G   A + + +  +  + +  + +D+LA   HP++V LL    
Sbjct: 13  LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF- 71

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
                  Y  N ++++ EF + G     + E    + L   +   V     +A+ +LH  
Sbjct: 72  -------YYENNLWILIEFCAGGAVDAVMLELE--RPLTEPQIRVVCKQTLEALNYLHEN 122

Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            I    +  +K  NIL       KL+D+G+S
Sbjct: 123 KI---IHRDLKAGNILFTLDGDIKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 41/223 (18%), Positives = 101/223 (45%), Gaps = 50/223 (22%)

Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP-SSKKYTVRNLKLRLDLLAKL-RHPH 540
           +GEG +G++         K + +   +VA++ L   + +  + +L   ++++  + +H +
Sbjct: 23  LGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 82

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV-------------L 587
           ++ LLG C   G         ++++ E+ S GN R ++    P  +             +
Sbjct: 83  IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQM 134

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    VA+ +++L +       +  +   N+L+ E+ + K++D+GL   + D+N
Sbjct: 135 TFKDLVSCTYQVARGMEYLAS---QKCIHRDLAARNVLVTENNVMKIADFGL---ARDVN 188

Query: 648 SVGGKQEDPN-----SW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++  N      W         +   + DV+SFG ++ E
Sbjct: 189 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 43/213 (20%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLP-SSKKYTVRNLKLRLDLLAKLRH---PHLVCL 544
           ++G G+YG +Y+G+ +  G  VA++ +   +    V +++  + LL++LR    P++   
Sbjct: 8   LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKY 67

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI--GVAKA 602
            G  + G         +++++ E+   G+ RT +     G +   +E+   +I   V  A
Sbjct: 68  YGSYLKG--------PRLWIIMEYAEGGSVRTLMK---AGPI---AEKYISVIIREVLVA 113

Query: 603 VQFLH-TGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIVSEDINSVGGKQED----- 655
           ++++H  GVI    +  +K  NIL+ N   + KL D+G   V+  +N    K+       
Sbjct: 114 LKYIHKVGVI----HRDIKAANILVTNTGNV-KLCDFG---VAALLNQNSSKRSTFVGTP 165

Query: 656 ----PNSWEMTKLED---DVFSFGFMLLESVAG 681
               P      K  D   D++S G  + E   G
Sbjct: 166 YWMAPEVITEGKYYDTKADIWSLGITIYEMATG 198

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 37/155 (23%), Positives = 80/155 (51%), Gaps = 26/155 (16%)

Query: 494 GSYGKLYKGRLEN-GTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           G+YG+++  + ++ G   AI+ +  +   +K  V  +    D+L++ + P++V L  +  
Sbjct: 4   GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLY-YSF 62

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI--GVAKAVQFLH 607
            G          ++LV E++  G+  + +       V +  E +A +    +  A+++LH
Sbjct: 63  QG-------KKNLYLVMEYLPGGDLASLLE-----NVGSLDEDVARIYIAEIVLALEYLH 110

Query: 608 T-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           + G+I     +R +K +NIL++ +   KL+D+GLS
Sbjct: 111 SNGII-----HRDLKPDNILIDSNGHLKLTDFGLS 140

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 34/169 (20%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR-------------LDLLAKL 536
           ++G+GSYG++            +R     K+Y ++ L LR               LL++L
Sbjct: 7   VVGKGSYGEV----------SLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQL 56

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
           +HP++V          G        +++V  F   G+    + E   GK+L  ++ +   
Sbjct: 57  KHPNIVAYRESWEGEDG-------LLYIVMGFCEGGDLYHKLKEQK-GKLLPENQVVEWF 108

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
           + +A A+Q+LH   I    +  +KT N+ L    I K+ D G++ V E+
Sbjct: 109 VQIAMALQYLHEKHI---LHRDLKTQNVFLTRTNIIKVGDLGIARVLEN 154

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 44/220 (20%)

Query: 490 IMGEGSYGKLYKGRLENG---TSVAIRCLPSSKKYTV----RNLKLRLDLLAKL-RHPHL 541
           ++GEG++G++ K R++        AI+ +   K+Y      R+    L++L KL  HP++
Sbjct: 2   VIGEGNFGQVLKARIKKDGLRMDAAIKRM---KEYASKDDHRDFAGELEVLCKLGHHPNI 58

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG--------KVLN 588
           + LLG C   G         ++L  E+  +GN      ++ + E  P           L+
Sbjct: 59  INLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 110

Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS 648
             + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   +++  
Sbjct: 111 SQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLS-RGQEVYV 166

Query: 649 VGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
                  P  W         +     DV+S+G +L E V+
Sbjct: 167 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 22/161 (13%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
           +++   +G G+YG +YK R +  G  VAI+ +          ++  + +L + RHP++V 
Sbjct: 5   YELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVA 64

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VAK 601
             G  +          +K+++V E+   G+    I + T G +   SE     +     K
Sbjct: 65  YFGSYLRR--------DKLWIVMEYCGGGSL-QDIYQVTRGPL---SELQIAYVCRETLK 112

Query: 602 AVQFLH-TGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            + +LH TG I     +R +K  NILL E    KL+D+G+S
Sbjct: 113 GLAYLHETGKI-----HRDIKGANILLTEDGDVKLADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 37/160 (23%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
            + +++   +G+G++GK+YK +  E G   A + +    +  + +  + +D+L++ +HP+
Sbjct: 4   NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPN 63

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V L            +  NK++++ EF   G   + + E    + L   +   V   + 
Sbjct: 64  IVGLYEAY--------FYENKLWILIEFCDGGALDSIMLEL--ERGLTEPQIRYVCRQML 113

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           +A+ FLH+  +    +  +K  NILL      KL+D+G+S
Sbjct: 114 EALNFLHSHKV---IHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 58/227 (25%)

Query: 490 IMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL------- 536
            +GEG++G++ K            ++VA++ L           K   DL++++       
Sbjct: 19  PLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDD-----ATEKDLSDLVSEMEMMKMIG 73

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
           +H +++ LLG C   G         +++V E+ ++GN R  +    P       +     
Sbjct: 74  KHKNIINLLGVCTQEG--------PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPP 125

Query: 597 IG-------------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
                          VA+ ++FL +       +  +   N+L+ E  + K++D+GL   +
Sbjct: 126 EETLTQKDLVSFAYQVARGMEFLASKKC---IHRDLAARNVLVTEDHVMKIADFGL---A 179

Query: 644 EDINSVG--GKQED---PNSW--------EMTKLEDDVFSFGFMLLE 677
            DI+ +    K  +   P  W         +   + DV+SFG +L E
Sbjct: 180 RDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE 226

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 47/217 (21%)

Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR------- 537
           +G+GS+G +Y+G      + E  T VA++ +  S      +L+ R++ L +         
Sbjct: 14  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA-----SLRERIEFLNEASVMKGFTC 68

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGKVL-NWS 590
           H H+V LLG    G            +V E M++G+ ++++      +EN PG+      
Sbjct: 69  H-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQ 119

Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINS 648
           E + +   +A  + +L+      F +  +   N ++      K+ D+G++  I   D   
Sbjct: 120 EMIQMAAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYR 176

Query: 649 VGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
            GGK   P  W   + L+D       D++SFG +L E
Sbjct: 177 KGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 213

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 55/280 (19%)

Query: 490 IMGEGSYGKLYKG-RLENGTS----VAIRCLPS-SKKYTVRNLKLRLDLLAKLRHPHLVC 543
           ++G G +G ++KG  +  G S    VAI+ +   S + T + +   +  +  L H ++V 
Sbjct: 14  LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVR 73

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPGKVLNWSERLAVLIGV 599
           LLG C             + LV +    G+   H+ ++     P ++LNW       + +
Sbjct: 74  LLGICPGA---------SLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWC------VQI 118

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPN 657
           AK + +L         +  +   NILL    I +++D+G++  +  +D      + + P 
Sbjct: 119 AKGMYYLEE---HRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPI 175

Query: 658 SWEMTKL--------EDDVFSFGFMLLESV---AGPSVAARKGQFLQEELDSLNSQEGRQ 706
            W   +         + DV+S+G  + E +   A P    R      E  D L   E  +
Sbjct: 176 KWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR----PHEVPDLL---EKGE 228

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDI 746
           RL  P +           V  +  KC   +   RP+F+++
Sbjct: 229 RLAQPQICTID-------VYMVMVKCWMIDENVRPTFKEL 261

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 50/287 (17%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRL-------DLLAK------LR 537
           +GEG +G + +G+L    S+         K  V+ +K+ +       D L++        
Sbjct: 7   LGEGEFGSVMEGQLNQDDSIL--------KVAVKTMKIAICTRSEMEDFLSEAVCMKEFD 58

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV---LNWSERLA 594
           HP+++ L+G C+     + Y    V L   FM +G+  + +  +  G     L     + 
Sbjct: 59  HPNVMRLIGVCLQTVESEGYPSPVVIL--PFMKHGDLHSFLLYSRLGDCPQYLPTQMLVK 116

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGK 652
            +  +A  +++L +     F +  +   N +LNE+    ++D+GLS  I + D    G  
Sbjct: 117 FMTDIASGMEYLSS---KSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRI 173

Query: 653 QEDPNSW-EMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG 704
            + P  W  +  L D       DV+SFG  + E +A        G    E  D L  ++G
Sbjct: 174 AKMPVKWIAIESLADRVYTTKSDVWSFGVTMWE-IATRGQTPYPGVENSEIYDYL--RQG 230

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
             RL  P        + L  + S+ + C       RPSFE +   L+
Sbjct: 231 -NRLKQPP-------DCLDGLYSLMSSCWLLNPKDRPSFETLRCELE 269

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 31/212 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRH 538
            +F +   +G+G YG+++  + ++ G  VA++ +  S   K   VR++    D+L   + 
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS 60

Query: 539 PHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
             LV LL           YA      ++L  E++  G+FRT ++      VL+       
Sbjct: 61  EWLVKLL-----------YAFQDDEYLYLAMEYVPGGDFRTLLNNL---GVLSEDHARFY 106

Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
           +  + +AV  LH     G+ +  +K  N L++     KL+D+GLS  IV+   NSV G  
Sbjct: 107 MAEMFEAVDALHE---LGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY-ANSVVGSP 162

Query: 654 E--DPNSWEMTKLED--DVFSFGFMLLESVAG 681
           +   P        +   D +S G ML E + G
Sbjct: 163 DYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCG 194

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 50/223 (22%)

Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS-SKKYTVRNLKLRLDLLAKL-RHPH 540
           +GEG +G+        L K +    T VA++ L S + +  + +L   ++++  + +H +
Sbjct: 26  LGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 85

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + L
Sbjct: 86  IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQL 137

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           ++ + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 138 SFKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 191

Query: 648 SVGGKQEDPN-----SW--------EMTKLEDDVFSFGFMLLE 677
            +   ++  N      W         +   + DV+SFG +L E
Sbjct: 192 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 37/159 (23%), Positives = 81/159 (50%), Gaps = 26/159 (16%)

Query: 491 MGEGSYGKLYKG-RLENGTSVAIRCLP-----SSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           +G GS+G +Y+G  L++G   A++ +       + +  V+ L+  + LL+KL+HP++V  
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK---VLNWSERLAVLIGVAK 601
           L     G  R++  +  +FL  E +  G+    + +        +  ++ ++  L+G+  
Sbjct: 68  L-----GTEREEDNLY-IFL--ELVPGGSLAKLLKKYGSFPEPVIRLYTRQI--LLGLE- 116

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              +LH        +  +K  NIL++ + + KL+D+G++
Sbjct: 117 ---YLHDR---NTVHRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 37/179 (20%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK-------LR- 529
            +  + ++  A +G+G++G+++K R  +    VA+      KK  + N K       LR 
Sbjct: 8   CDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVAL------KKVLMENEKEGFPITALRE 61

Query: 530 LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEF--------MSNGNFRTHISEN 581
           + +L  L+H ++V L+  C       +      +LV+EF        +SN N +      
Sbjct: 62  IKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVK------ 115

Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
                   SE   V+  +   + ++H   I    +  +K  NIL+ +  I KL+D+GL+
Sbjct: 116 -----FTLSEIKKVMKMLLNGLYYIHRNKI---LHRDMKAANILITKDGILKLADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 50/217 (23%)

Query: 492 GEGSYGKLYKG-RLENGTSVA---IRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG- 546
           G G++GK+Y    L+ G  +A   IR   +  K T++ +   + +L  L+HP+LV   G 
Sbjct: 9   GGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPK-TIKEIADEMKVLELLKHPNLVKYYGV 67

Query: 547 --HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL----IGVA 600
             H      R+     KV++  E+ S G     + E+  G++L+      V+    + + 
Sbjct: 68  EVH------RE-----KVYIFMEYCSGGTL-EELLEH--GRILD----EHVIRVYTLQLL 109

Query: 601 KAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED--- 655
           + + +LH+ G++    +  +K  NI L+ + + KL D+G +  +  +  ++G + +    
Sbjct: 110 EGLAYLHSHGIV----HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAG 165

Query: 656 ------PNSWEMTKLE-----DDVFSFGFMLLESVAG 681
                 P      K +      D++S G ++LE   G
Sbjct: 166 TPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATG 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%)

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL 346
           L +    LRG  P  I  L ++  +NL+ N   G++P +L     L   D+S N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 347 PSCLSNESDKRVVKFRGNCLSSNV 370
           P  L   +  R++   GN LS  V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 38/170 (22%)

Query: 485 FDMSAIMGEGSYGKL----YKGRLENGTSVAIRCLPSSKK---------YTVRNLKLRLD 531
           F   A++G G +GK+    YK     G   AI+ L   KK          ++   K   +
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKK---TGELYAIKAL---KKGDIIARDEVESLMCEKRIFE 54

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
                RHP LV L   C           + V  V E+ + G+   HI  +       +SE
Sbjct: 55  TANSERHPFLVNLFA-CFQ-------TEDHVCFVMEYAAGGDLMMHIHTDV------FSE 100

Query: 592 RLAVLIG--VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
             AV     V   +Q+LH           +K +N+LL+     K++D+GL
Sbjct: 101 PRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 43/169 (25%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPHLV 542
           I+G G +G++Y  R  + G   A++CL   +      +    N ++ L L++    P +V
Sbjct: 1   IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 60

Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           C+            YA    +K+  + + M+ G+   H+S++       +SE        
Sbjct: 61  CM-----------TYAFHTPDKLCFILDLMNGGDLHYHLSQHGV-----FSE-------- 96

Query: 600 AKAVQFLHTGVIPGF--FNNR------VKTNNILLNEHRIAKLSDYGLS 640
            K ++F  T +I G    +NR      +K  NILL+EH   ++SD GL+
Sbjct: 97  -KEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 25/155 (16%)

Query: 493 EGSYGKLYKGR-LENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCL---- 544
           EG+YG +Y+ R  + G  VA++ L   K+   + + +L+  +++L KL+HP++V +    
Sbjct: 15  EGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLR-EINILLKLQHPNIVTVKEVV 73

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           +G  +D          K+++V E++ + + ++ +           SE   +++ +   V 
Sbjct: 74  VGSNLD----------KIYMVMEYVEH-DLKSLMETMKQP--FLQSEVKCLMLQLLSGVA 120

Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
            LH   I    +  +KT+N+LLN   I K+ D+GL
Sbjct: 121 HLHDNWI---LHRDLKTSNLLLNNRGILKICDFGL 152

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 44/221 (19%)

Query: 167 KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRI------------- 213
           ++ TLILD+N   +   N   ++ +L   S +   +    P +IQ +             
Sbjct: 200 QITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPER 259

Query: 214 --STLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
             S L  LDL  N IS  LP+      L  L++ DN + +    LP G+    + +NS +
Sbjct: 260 LPSALQSLDLFHNKIS-CLPENLPEE-LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT 317

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMP---PPAIFSL---------------PNISDLNL 313
             +P+       L+ L+   NAL  +P   PP +  L               P I+ L++
Sbjct: 318 A-LPETLPP--GLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDV 374

Query: 314 ASNKFSGSLPKNLNCGGKLVFFDISNN---KLTGGLPSCLS 351
           + N  + +LP+NL     L     S N   +L   LP    
Sbjct: 375 SRNALT-NLPENLPAA--LQIMQASRNNLVRLPESLPHFRG 412

Length = 754

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 55/267 (20%)

Query: 510 VAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEF 568
           VA++ L        RN  L+ + ++++L+ P+++ LL  CI      D     + ++ E+
Sbjct: 49  VAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCIT----SD----PLCMITEY 100

Query: 569 MSNGNFRTHISENTPGKVLNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVK 620
           M NG+    +S + P +    ++ + +           +A  +++L +     F +  + 
Sbjct: 101 MENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLA 157

Query: 621 TNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDP---NSWEMTKL-----EDDVFS 670
           T N L+ ++   K++D+G+S  + S D   + G+   P    SWE   L       DV++
Sbjct: 158 TRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWA 217

Query: 671 FGFMLLE-----------SVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL 719
           FG  L E            ++   V    G+F ++        +GRQ  +    +   SL
Sbjct: 218 FGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRD--------QGRQVYLPKPALCPDSL 269

Query: 720 ESLSIVISIANKCICSESWSRPSFEDI 746
             L +       C    +  RPSF++I
Sbjct: 270 YKLML------SCWRRNAKERPSFQEI 290

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 31/170 (18%)

Query: 487 MSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKKYTVRNLKLRLDLLAK-LRHPHL 541
           +   +GEG +G +Y+G   +      +VA++   +    +VR   L+   + +   HPH+
Sbjct: 10  LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHI 69

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV-- 599
           V L+G   +         N V++V E    G  R+++  N           L +   +  
Sbjct: 70  VKLIGVITE---------NPVWIVMELAPLGELRSYLQVN--------KYSLDLASLILY 112

Query: 600 ----AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
               + A+ +L +     F +  +   N+L++     KL D+GLS   ED
Sbjct: 113 SYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED 159

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 67/293 (22%), Positives = 111/293 (37%), Gaps = 70/293 (23%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD--------------LLAKL 536
           +G+G++  +YKG L   + + I          V  +   L               L+++L
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIV----GPGQEVSVVLKVLGSDHRDSLAFFETASLMSQL 58

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
            H HLV L G C+    RD+       +V E++  G     +        L+W  +L V 
Sbjct: 59  SHKHLVKLYGVCV----RDENI-----MVEEYVKFGPLDVFLHREKNNVSLHW--KLDVA 107

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI-------AKLSDYGLSIVSEDINSV 649
             +A A+ +L         +  V   NIL+  + +        KLSD G+ I      +V
Sbjct: 108 KQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI------TV 158

Query: 650 GGKQE--DPNSW----------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD 697
             ++E  +   W              +  D +SFG  LLE  +            +E L 
Sbjct: 159 LSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNG----------EEPLS 208

Query: 698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL 750
           +L+S E  +   D   +       L+ +I   N+C   +   RPSF  IL +L
Sbjct: 209 TLSSSEKERFYQDQHRLPMPDCAELANLI---NQCWTYDPTKRPSFRAILRDL 258

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 66/310 (21%), Positives = 102/310 (32%), Gaps = 65/310 (20%)

Query: 122 VLSLVSLGIWGS---------LPDKIHRLYSLEYLDLSSNFL------FGSVPPKISTMV 166
           +L L  L + G+         L   +    SL+ L LS N          S+   ++   
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 167 KLQTLILDDNFFNNTIPNWFDSL---PSLTFLSMRNNKLAGPFPSSIQR-----ISTLSD 218
            LQ L L DN          +SL    SL  L + NN L       + +        L  
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 219 LDLSKNAISGSLPD-----LSSLGSLNVLNLSDNKL-DSNLPKLPRGLVMAFLSNNSFSG 272
           L L +N + G+  +     L +   L  LNL++N + D+ +  L  GL            
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA---------- 191

Query: 273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIF------SLPNISDLNLASNKFSGS----- 321
                      L+ LD++ N L      A        SL ++  LNL  N  + +     
Sbjct: 192 --------NCNLEVLDLNNNGL--TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241

Query: 322 LPKNLNCGGKLVFFDISNNKLT--GGLPSC--LSNESDKRVVKFRGNCLSSNVQNQHPES 377
               L+    L+   +S N +T  G       L+ +     +  RGN           ES
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301

Query: 378 -YCFEVRTER 386
                   E 
Sbjct: 302 LLEPGNELES 311

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 43/207 (20%), Positives = 90/207 (43%), Gaps = 39/207 (18%)

Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +G G +G+++       T VA++ + P S   +V       +++  L+H  LV       
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLV------- 64

Query: 550 DGGGRDDYAVNK--VFLVYEFMSNGNFRTHISENTPGKV-----LNWSERLAVLIGVAKA 602
               +    V K  ++++ EFM+ G+    +  +   K      +++S ++A  +   + 
Sbjct: 65  ----KLHAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ 120

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED-PNSWEM 661
             ++H           ++  NIL++   + K++D+GL+ V ED      +    P  W  
Sbjct: 121 RNYIH---------RDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTA 171

Query: 662 TK--------LEDDVFSFGFMLLESVA 680
            +        ++ DV+SFG +L+E V 
Sbjct: 172 PEAINFGSFTIKSDVWSFGILLMEIVT 198

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 33/171 (19%)

Query: 484 NFDMSAIMGEGSYGKLY----KGRLENGTSVAIRCLPSS----KKYTVRNLKLRLDLLAK 535
           NF++  ++G G+YGK++     G  + G   A++ L  +    K  T  + +    +L  
Sbjct: 1   NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEA 60

Query: 536 LRH-PHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           +R  P LV L  H         YA     K+ L+ ++++ G   TH+ +           
Sbjct: 61  VRRCPFLVTL--H---------YAFQTDTKLHLILDYVNGGELFTHLYQREHFT----ES 105

Query: 592 RLAVLIG-VAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            + V I  +  A+  LH  G+I       +K  NILL+      L+D+GLS
Sbjct: 106 EVRVYIAEIVLALDHLHQLGII----YRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 15/158 (9%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           +F++   +G G+YG +YK R +  G   AI+ +          ++  + ++   +H ++V
Sbjct: 10  DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIV 69

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
              G  +    RD     K+++  EF   G+ +       P   L+ S+   V     + 
Sbjct: 70  AYFGSYLR---RD-----KLWICMEFCGGGSLQDIYHVTGP---LSESQIAYVSRETLQG 118

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           + +LH+    G  +  +K  NILL ++   KL+D+G+S
Sbjct: 119 LYYLHS---KGKMHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 40/167 (23%)

Query: 490 IMGEGSYGKLYKGRLENGTS----VAIRCLPSSKKYTVRNLK------LRLDLLAKLRHP 539
           ++G+G YGK+++ R   G       A++ L   K   VRN K         ++L  ++HP
Sbjct: 3   VLGKGGYGKVFQVRKVTGADTGKIFAMKVL--KKATIVRNQKDTAHTKAERNILEAVKHP 60

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------ENTPGKVLNWSERL 593
            +V L+ +    GG       K++L+ E++S G    H+       E+T    L  SE  
Sbjct: 61  FIVDLI-YAFQTGG-------KLYLILEYLSGGELFMHLEREGIFMEDTACFYL--SE-- 108

Query: 594 AVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
                ++ A++ LH  G+I       +K  NILL+     KL+D+GL
Sbjct: 109 -----ISLALEHLHQQGII----YRDLKPENILLDAQGHVKLTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 32/161 (19%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHC 548
           +GEG+Y  +YKGR    G  VA++ +    +    +  +R + L+ +L+H ++V L    
Sbjct: 8   LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRL---- 63

Query: 549 IDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
                   + V    NK+ LV+E+M   + + ++  +     L+ +   +    + K + 
Sbjct: 64  --------HDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIA 114

Query: 605 FLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           F H         NRV     K  N+L+N+    KL+D+GL+
Sbjct: 115 FCH--------ENRVLHRDLKPQNLLINKRGELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 43/212 (20%)

Query: 493 EGSYGKLYKGRLENGTS-----VAIRCLPSSKKYTVRNLKLRLD-LLAKLRHPHLVCLLG 546
           EG++G+++ G L +        V ++ +          L L+   LL  L H +++ +L 
Sbjct: 16  EGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILH 75

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRT------HISENTPGKVLNWSERLAVLIG-- 598
            CI+ G          F++Y +M+ GN +           N P  +   S +  V +   
Sbjct: 76  VCIEDGE-------PPFVLYPYMNWGNLKLFLQQCRLGEANNPQAL---STQQLVHMAIQ 125

Query: 599 VAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQED 655
           +A  + +LH  GVI    +  +   N +++E    K++D  LS  +   D + +G  +  
Sbjct: 126 IACGMSYLHKRGVI----HKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENR 181

Query: 656 PNSWEMTKLE----------DDVFSFGFMLLE 677
           P  W M  LE           DV+SFG +L E
Sbjct: 182 PVKW-MA-LESLVNKEYSSASDVWSFGVLLWE 211

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 56/223 (25%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCL-----PSSKKYTVRNLKLRLDLLAKL 536
                 + +GEG+ G + K RL   G   A++ +     P  +K  +R L++        
Sbjct: 1   EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEI----NKSC 56

Query: 537 RHPHLVCLLGHCID-------------GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
           + P++V   G  +D              GG  D    KV         G     I E   
Sbjct: 57  KSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKV------KKRGG---RIGEKVL 107

Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
           GK+            V K + +LH+  I    +  +K +NILL      KL D+G+S   
Sbjct: 108 GKIAE---------SVLKGLSYLHSRKI---IHRDIKPSNILLTRKGQVKLCDFGVS--G 153

Query: 644 EDINSVGGKQEDPNSWEMT---------KLEDDVFSFGFMLLE 677
           E +NS+ G      S+ M           +  DV+S G  LLE
Sbjct: 154 ELVNSLAGTFTG-TSFYMAPERIQGKPYSITSDVWSLGLTLLE 195

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 43/222 (19%), Positives = 97/222 (43%), Gaps = 48/222 (21%)

Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLPS-SKKYTVRNLKLRLDLLAKL-RHPH 540
           +GEG +G++         K +     +VA++ L   +    + +L   ++++  + +H +
Sbjct: 20  LGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKN 79

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE-------------NTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + L
Sbjct: 80  IINLLGACTQDG--------PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQL 131

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL+    +I+
Sbjct: 132 TFKDLVSCAYQVARGMEYLAS---QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNID 188

Query: 648 ----SVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
               +  G+   P  W         +   + DV+SFG +L E
Sbjct: 189 YYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSFGVLLWE 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 32/170 (18%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP-----SSKKYTVRNLKLRLDLLAKL 536
            N+    ++G+G++G++Y    ++ G  +A++ +P        K  V  L+  + LL  L
Sbjct: 2   TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL 61

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGKVLNWS 590
           +H  +V   G C+    RDD     + +  E+M  G+ +  +      +E    K     
Sbjct: 62  QHERIVQYYG-CL----RDD---ETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTR-- 111

Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
               +L GV     +LH+ +I    +  +K  NIL +     KL D+G S
Sbjct: 112 ---QILEGVE----YLHSNMI---VHRDIKGANILRDSAGNVKLGDFGAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 34/169 (20%)

Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHP 539
           +F+M   +G GS+G++   + +  G   AI+CL      K   V+++     +L +L HP
Sbjct: 19  DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHP 78

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            +V ++        +D+   N+V+ + EF+  G   TH+     G+  N          V
Sbjct: 79  FIVNMMC-----SFQDE---NRVYFLLEFVVGGELFTHL--RKAGRFPN---------DV 119

Query: 600 AKAVQFLHTGVIPGF--FNNR------VKTNNILLNEHRIAKLSDYGLS 640
           AK   F H  ++  F   +++      +K  N+LL+     K++D+G +
Sbjct: 120 AK---FYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFA 165

Length = 329

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 41.5 bits (97), Expect = 9e-04
 Identities = 72/307 (23%), Positives = 124/307 (40%), Gaps = 75/307 (24%)

Query: 490 IMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNL-----KLRLD---LLAKLRHPH 540
           ++G G++G +YKG  + +G +V I   P + K    N      K  LD   ++A +  P+
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKI---PVAIKVLRENTSPKANKEILDEAYVMAGVGSPY 70

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT----PGKVLNWSERLAVL 596
           +  LLG C+          + V LV + M  G    ++ EN        +LNW  ++A  
Sbjct: 71  VCRLLGICL---------TSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKG 121

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS----IVSEDINSVGGK 652
           +   + V+ +H           +   N+L+      K++D+GL+    I   + ++ GGK
Sbjct: 122 MSYLEEVRLVH---------RDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 172

Query: 653 QEDPNSWEMTKL--------EDDVFSFGFMLLESV---AGP--SVAARKGQFLQEELDSL 699
              P  W   +         + DV+S+G  + E +   A P   + AR       E+  L
Sbjct: 173 V--PIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR-------EIPDL 223

Query: 700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET 759
              E  +RL  P +           V  I  KC   +S  RP F +++       +    
Sbjct: 224 --LEKGERLPQPPICTID-------VYMIMVKCWMIDSECRPRFRELV------DEFSRM 268

Query: 760 ADNEQRF 766
           A +  RF
Sbjct: 269 ARDPSRF 275

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 40/164 (24%), Positives = 84/164 (51%), Gaps = 28/164 (17%)

Query: 489 AIMGEGSYGKLYKGR-LENGTSVAI------RCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
             +G G++   Y+ R ++ GT +A+      R   S ++  V  L+  + L+A+L HPH+
Sbjct: 6   QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHI 65

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK---VLNWSERLAVLIG 598
           + +L     G   +D   N +F+  E+M+ G+    +S+    K   ++N++E+  +L G
Sbjct: 66  IRML-----GATCEDSHFN-LFV--EWMAGGSVSHLLSKYGAFKEAVIINYTEQ--LLRG 115

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLSI 641
           ++    +LH   I    +  VK  N+L++   +  +++D+G + 
Sbjct: 116 LS----YLHENQI---IHRDVKGANLLIDSTGQRLRIADFGAAA 152

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 23/164 (14%)

Query: 484 NFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTV-RNLKLR-LDLLAKLRHPH 540
           +F++   +G+GS+G ++K  R  +    A++ +  SK     R   +    +LAKL   +
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN----WSERLAVL 596
           ++      +D G        K+ +V E+  NG+    +     G+ L     W   + +L
Sbjct: 61  IIRYYESFLDKG--------KLNIVMEYAENGDLHKLLKMQR-GRPLPEDQVWRFFIQIL 111

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           +G+A     LH+  I    +  +K+ N+ L+ +   K+ D G++
Sbjct: 112 LGLA----HLHSKKI---LHRDIKSLNLFLDAYDNVKIGDLGVA 148

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 167 KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
            L++L L +N         F  LP+L  L +  N L    P +   + +L  LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 36/231 (15%)

Query: 491 MGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRL---DLLAKLRHPHLVCLLG 546
           +G+G +G++   +++  G   A + L   +    +  ++ L    +L K+    +V L  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSL-- 58

Query: 547 HCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISE-NTPGKVLNWSERLAVLIG--VA 600
                     YA    + + LV   M+ G+ + HI     PG    + E  A+     + 
Sbjct: 59  ---------AYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPG----FPEARAIFYAAQII 105

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN--S 658
             ++ LH   I       +K  N+LL++H   ++SD GL++  +    + G+   P   +
Sbjct: 106 CGLEHLHQRRI---VYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMA 162

Query: 659 WEMTKLED-----DVFSFGFMLLESVAGPS-VAARKGQFLQEELDSLNSQE 703
            E+ + E      D F+ G  L E +AG S    RK +  +EEL     + 
Sbjct: 163 PEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEM 213

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 30/202 (14%)

Query: 490 IMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTV-RNLKLRLDLLAKLRHPHLVCLLGH 547
           I+G G+ G +YK   L     +A++ +P      + + +   L++L K   P+++   G 
Sbjct: 8   ILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGA 67

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                    +  N++ +  EFM  G+   +     P  VL    R+AV   V K + +L 
Sbjct: 68  F--------FVENRISICTEFMDGGSLDVY--RKIPEHVLG---RIAV--AVVKGLTYLW 112

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW-------- 659
           +  I    +  VK +N+L+N     KL D+G+S  ++ +NS+       N++        
Sbjct: 113 SLKI---LHRDVKPSNMLVNTRGQVKLCDFGVS--TQLVNSIAKTYVGTNAYMAPERISG 167

Query: 660 EMTKLEDDVFSFGFMLLESVAG 681
           E   +  DV+S G   +E   G
Sbjct: 168 EQYGIHSDVWSLGISFMELALG 189

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 42/201 (20%), Positives = 92/201 (45%), Gaps = 26/201 (12%)

Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +G+G+ G ++    +  G  VAI+ +   K+     +   + ++ +L++P++V  L    
Sbjct: 27  IGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFL---- 82

Query: 550 DGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
                D + V +++F+V E+++ G+    ++E      ++ ++  AV     +A++FLH 
Sbjct: 83  -----DSFLVGDELFVVMEYLAGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHA 133

Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKL---- 664
             +    +  +K++N+LL      KL+D+G         S          W   ++    
Sbjct: 134 NQV---IHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 190

Query: 665 ----EDDVFSFGFMLLESVAG 681
               + D++S G M +E V G
Sbjct: 191 AYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 34/153 (22%), Positives = 80/153 (52%), Gaps = 19/153 (12%)

Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNLKLRLDLLAKLRHPHLVCLLGH 547
           +G+GS+G+++KG ++N T   VAI+ +     +  + +++  + +L++   P++    G 
Sbjct: 12  IGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGS 70

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
            +           K++++ E++  G   + +    PG  L+ ++   +L  + K + +LH
Sbjct: 71  YLKD--------TKLWIIMEYLGGG---SALDLLEPGP-LDETQIATILREILKGLDYLH 118

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           +       +  +K  N+LL+EH   KL+D+G++
Sbjct: 119 S---EKKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 31/170 (18%)

Query: 484 NFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS----KKYTVRNLKLRLDLLAK 535
           NF++  ++G G+YGK++  R     ++G   A++ L  +    K  T  + +    +L  
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 60

Query: 536 LRH-PHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           +R  P LV L            YA     K+ L+ ++++ G   TH+S+    K     +
Sbjct: 61  IRQSPFLVTL-----------HYAFQTDTKLHLILDYINGGELFTHLSQRERFK----EQ 105

Query: 592 RLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            + +  G +  A++ LH     G     +K  NILL+ +    L+D+GLS
Sbjct: 106 EVQIYSGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 26/141 (18%)

Query: 555 DDYAVN-KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIP 612
             Y V  ++++V EF+  G   T I  +T    +N  +   V + V KA+ FLH  GVI 
Sbjct: 83  SSYLVGDELWVVMEFLEGGAL-TDIVTHTR---MNEEQIATVCLAVLKALSFLHAQGVI- 137

Query: 613 GFFNNRVKTNNILLNEHRIAKLSDYGL-SIVSEDI---NSVGGKQEDPNSWEMTKL---- 664
              +  +K+++ILL      KLSD+G  + VS+++    S+ G       W   ++    
Sbjct: 138 ---HRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTP----YWMAPEVISRL 190

Query: 665 ----EDDVFSFGFMLLESVAG 681
               E D++S G M++E V G
Sbjct: 191 PYGTEVDIWSLGIMVIEMVDG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 39/166 (23%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           ++G+G+YG +Y  R L     +AI+ +P      V+ L   + L + L+H ++V  LG  
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSD 74

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN------W---SERLAVLIGV 599
            + G          F +  FM          E  PG  L+      W    +    +I  
Sbjct: 75  SENG---------FFKI--FM----------EQVPGGSLSALLRSKWGPLKDNEQTIIFY 113

Query: 600 AKAV----QFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLS 640
            K +    ++LH   I    +  +K +N+L+N +  + K+SD+G S
Sbjct: 114 TKQILEGLKYLHDNQI---VHRDIKGDNVLVNTYSGVVKISDFGTS 156

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 23/154 (14%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRC--LPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           G+GS+G++YK         VAI+   L  ++   + +++  +  L++ R P++    G  
Sbjct: 10  GKGSFGEVYKAIDKRTNQVVAIKVIDLEEAED-EIEDIQQEIQFLSQCRSPYITKYYGSF 68

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
           + G        +K++++ E+   G+    +    PGK L+ +    +L  V   +++LH 
Sbjct: 69  LKG--------SKLWIIMEYCGGGSCLDLLK---PGK-LDETYIAFILREVLLGLEYLHE 116

Query: 609 -GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            G I     +R +K  NILL+E    KL+D+G+S
Sbjct: 117 EGKI-----HRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 53/295 (17%)

Query: 485 FDMSAIMGEGSYGKLYKGRL--ENGT--SVAIRCLPSSKKYTVRNLKLRLDLLAKLR--- 537
           F +  ++G+G +G + + +L  E+G+   VA++ L  +  ++  +++  L   A ++   
Sbjct: 1   FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKML-KADIFSSSDIEEFLREAACMKEFD 59

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT-----HISE---NTPGKVLNW 589
           HP+++ L+G  +    +    +  V L   FM +G+  T      I E     P + L  
Sbjct: 60  HPNVIKLIGVSLRSRAKGRLPIPMVIL--PFMKHGDLHTFLLMSRIGEEPFTLPLQTL-- 115

Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDIN 647
              +  +I +A  +++L +     F +  +   N +LNE+    ++D+GLS  I S D  
Sbjct: 116 ---VRFMIDIASGMEYLSS---KNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYY 169

Query: 648 SVGGKQEDPNSW-EMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQ---EEL 696
             G   + P  W  +  L D       DV++FG  + E +        +GQ      E  
Sbjct: 170 RQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMT-------RGQTPYAGVENS 222

Query: 697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           +  N      RL  P        + L  V  +  +C   E   RPSF+ +   L+
Sbjct: 223 EIYNYLIKGNRLKQP-------PDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLE 270

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 26/201 (12%)

Query: 491 MGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           +GEGS G +    +++ G  VA++ +   K+     L   + ++   +H ++V +    +
Sbjct: 28  IGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL 87

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
            G        +++++V EF+  G   T I  +T    +N  +  AV + V KA+  LH  
Sbjct: 88  VG--------DELWVVMEFLEGGAL-TDIVTHTR---MNEEQIAAVCLAVLKALSVLHA- 134

Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGL-SIVSEDINSVGGKQEDPNSWEMTKL---- 664
              G  +  +K+++ILL      KLSD+G  + VS+++         P  W   +L    
Sbjct: 135 --QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTP-YWMAPELISRL 191

Query: 665 ----EDDVFSFGFMLLESVAG 681
               E D++S G M++E V G
Sbjct: 192 PYGPEVDIWSLGIMVIEMVDG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 46/176 (26%)

Query: 486 DMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV---RNLKLRLDLLAKLRHPHL 541
           D+  I G GS+G +Y  R +     VAI+ +  S K +    +++   +  L +LRHP+ 
Sbjct: 19  DLREI-GHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNT 77

Query: 542 V----CLLG---------HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
           +    C L          +C+ G   D   V+K                       K L 
Sbjct: 78  IEYKGCYLREHTAWLVMEYCL-GSASDILEVHK-----------------------KPLQ 113

Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG-LSIVS 643
             E  A+  G  + + +LH+       +  +K  NILL E    KL+D+G  S+VS
Sbjct: 114 EVEIAAICHGALQGLAYLHS---HERIHRDIKAGNILLTEPGTVKLADFGSASLVS 166

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 98  NASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGS 157
           + +LS N    +   +L  +TSL VL L      GS+P+ + +L SL  L+L+ N L G 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 158 VP 159
           VP
Sbjct: 506 VP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 24/81 (29%)

Query: 216 LSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE 273
           L  LDLS N ++  +PD     L +L VL+LS N L S             +S  +FSG 
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTS-------------ISPEAFSG- 46

Query: 274 IPKQYGQLNQLQQLDMSFNAL 294
                  L  L+ LD+S N L
Sbjct: 47  -------LPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKL 249
           +L  L + NN+L      + + +  L  LDLS N ++   P+  S L SL  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 46/226 (20%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL----EN-GTSVAIRCLPSSKKYTVRNLKLR 529
           L  LKE    F    ++G G++G +YKG      E     VAI+ L  +        K  
Sbjct: 1   LRILKET--EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEI 56

Query: 530 LD---LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-- 584
           LD   ++A + +PH+  LLG C+          + V L+ + M  G    ++ E+     
Sbjct: 57  LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 107

Query: 585 --KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV 642
              +LNW       + +AK + +L    +    +  +   N+L+   +  K++D+GL+ +
Sbjct: 108 SQYLLNWC------VQIAKGMNYLEERRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 158

Query: 643 ----SEDINSVGGK-------QEDPNSWEMTKLEDDVFSFGFMLLE 677
                ++ ++ GGK        E       T  + DV+S+G  + E
Sbjct: 159 LGADEKEYHAEGGKVPIKWMALESILHRIYTH-QSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 45/170 (26%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVR-------NLKLRLDLLAKLRHPHL 541
           I+G G +G++Y  R  + G   A++CL   K+  ++       N ++ L L++    P +
Sbjct: 1   IIGRGGFGEVYGCRKADTGKMYAMKCL-DKKRIKMKQGETLALNERIMLSLVSTGDCPFI 59

Query: 542 VCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           VC+            YA    +K+  + + M+ G+   H+S++       +SE       
Sbjct: 60  VCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLSQHGV-----FSE------- 96

Query: 599 VAKAVQFLHTGVIPGF--FNNR------VKTNNILLNEHRIAKLSDYGLS 640
               ++F    +I G    +NR      +K  NILL+EH   ++SD GL+
Sbjct: 97  --AEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP----SSKKYTVRNLKLRLDLLAKL 536
             NF +   +G+G +  +YK   L +G  VA++ +        K     LK  +DLL +L
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLK-EIDLLKQL 59

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL--A 594
            HP+++  L   I+         N++ +V E    G+    I      K L   ER    
Sbjct: 60  DHPNVIKYLASFIEN--------NELNIVLELADAGDLSRMIKHFKKQKRL-IPERTIWK 110

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
             + +  A++ +H+  I    +  +K  N+ +    + KL D GL
Sbjct: 111 YFVQLCSALEHMHSKRI---MHRDIKPANVFITATGVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 30/166 (18%)

Query: 490 IMGEGSYGKLYK-GRLENGTSVAIRCLPSSKKYTVRNLKLR--------LDLLAKLRHPH 540
            +G+GS+G + K  R  +G  +        K+    N+  +        +++L +L+HP+
Sbjct: 7   TIGKGSFGTVRKVRRKSDGKILVW------KEIDYGNMTEKEKQQLVSEVNILRELKHPN 60

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGV 599
           +V      ID       +   +++V E+   G+    I +     K +       +L  +
Sbjct: 61  IVRYYDRIID------RSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQL 114

Query: 600 AKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
             A+   H    PG   N V     K  NI L+ +   KL D+GL+
Sbjct: 115 LLALYECHNRSDPG---NTVLHRDLKPANIFLDANNNVKLGDFGLA 157

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 33/171 (19%)

Query: 484 NFDMSAIMGEGSYGKLYKGRLENG--------TSVAIRCLPSSKKYTVRNLKLRLDLLAK 535
           NF++  ++G G+YGK++  R   G          V  +     K  TV + +   ++L  
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEH 60

Query: 536 LRH-PHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           +R  P LV L            YA     K+ L+ +++S G   TH+ +       N+SE
Sbjct: 61  VRQSPFLVTL-----------HYAFQTEAKLHLILDYVSGGEMFTHLYQRD-----NFSE 104

Query: 592 -RLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             +    G +  A++ LH     G     +K  NILL+      L+D+GLS
Sbjct: 105 DEVRFYSGEIILALEHLHK---LGIVYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 28/160 (17%)

Query: 491 MGEGSYGKLYKGRLENGTS----VAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLL 545
           +G+GS+G + +G           VA++CL S K    + +      ++  L H +L+ L 
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLY 62

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL-----NWSERLAVLIGVA 600
           G  +          + + +V E    G+    + ++  G  L     +++ +      +A
Sbjct: 63  GVVLT---------HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQ------IA 107

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             +++L +     F +  +   NILL      K+ D+GL 
Sbjct: 108 NGMRYLES---KRFIHRDLAARNILLASDDKVKIGDFGLM 144

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 70/316 (22%), Positives = 118/316 (37%), Gaps = 71/316 (22%)

Query: 470 CRSFT------LEELKEATNNFDMSAIMGEGSYGK-LYKGRLENGTSVAIRCLPSSKKYT 522
           CR+F           KE    + +S ++G G+ G  L   R+ +G   A++ +   +  +
Sbjct: 13  CRTFPDTFAKDEATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVV-DMEGMS 71

Query: 523 VRNLKLRLDLLAKLRHPHLVCLLGHC------------IDGGGRDDYAVNKVFLVYEFMS 570
             +         K R    VC L +C                 R+   V  + LV ++ +
Sbjct: 72  EAD---------KNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYAN 122

Query: 571 NGNFRTHI-SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH 629
            G+ R  I S     +     E   + I V  AV  +H+       +  +K+ NILL  +
Sbjct: 123 AGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHS---KHMIHRDIKSANILLCSN 179

Query: 630 RIAKLSDYGLS-----IVSEDINSVGGKQ-------EDPNSWEMTKLED--DVFSFGFML 675
            + KL D+G S      VS+D+    G+          P  W         D+FS G +L
Sbjct: 180 GLVKLGDFGFSKMYAATVSDDV----GRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLL 235

Query: 676 LESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV----DPVVMATSSLESLSIVISIANK 731
            E +            L+   D  N +E   + +    DP+  + S  E   IV ++   
Sbjct: 236 YELLT-----------LKRPFDGENMEEVMHKTLAGRYDPLPPSISP-EMQEIVTAL--- 280

Query: 732 CICSESWSRPSFEDIL 747
            + S+   RPS   +L
Sbjct: 281 -LSSDPKRRPSSSKLL 295

Length = 496

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 35/153 (22%), Positives = 78/153 (50%), Gaps = 19/153 (12%)

Query: 491 MGEGSYGKLYKGRLENGTS--VAIRCLP-SSKKYTVRNLKLRLDLLAKLRHPHLVCLLGH 547
           +G+GS+G++YKG ++N T   VAI+ +     +  + +++  + +L++   P++    G 
Sbjct: 12  IGKGSFGEVYKG-IDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGS 70

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
            + G         K++++ E++  G   + +    PG  L  +    +L  + K + +LH
Sbjct: 71  YLKG--------TKLWIIMEYLGGG---SALDLLKPGP-LEETYIATILREILKGLDYLH 118

Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           +       +  +K  N+LL+E    KL+D+G++
Sbjct: 119 S---ERKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAI-RCLPSSKKYTVRNLKLR-LDLLAKLRH-PHLVCLL 545
            +GEG+YGK+YK R    G  VA+ +      +  +    LR + LL  L    ++V LL
Sbjct: 8   KIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLL 67

Query: 546 G--HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN--TPGKVLNWSERLAVLIGVAK 601
              H  +  G+       ++LV+E++ + + +  +  N   PG+ L      + +  + K
Sbjct: 68  DVEHVEEKNGK-----PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK 121

Query: 602 AVQFLHT-GVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLS 640
            V   H  GV+    +  +K  N+L+++ + + K++D GL 
Sbjct: 122 GVAHCHKHGVM----HRDLKPQNLLVDKQKGLLKIADLGLG 158

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 50/213 (23%)

Query: 491 MGEGSYGKLYKG-RLENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           +G+G+ G +Y    +  G  VAI+ +      KK  + N  L   ++ + +HP++V  L 
Sbjct: 27  IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEIL---VMRENKHPNIVNYL- 82

Query: 547 HCIDGGGRDDYAV-NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
                   D Y V +++++V E+++ G+    ++E      ++  +  AV     +A++F
Sbjct: 83  --------DSYLVGDELWVVMEYLAGGSLTDVVTETC----MDEGQIAAVCRECLQALEF 130

Query: 606 LHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSEDINS-------------- 648
           LH+  VI    +  +K++NILL      KL+D+G    I  E                  
Sbjct: 131 LHSNQVI----HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 186

Query: 649 VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
           V  K   P          D++S G M +E V G
Sbjct: 187 VTRKAYGPKV--------DIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	766
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.98
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.98
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.98
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.98
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.98
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.98
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.98
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.98
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.98
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.98
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.98
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.98
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.98
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.98
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.98
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.98
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.98
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.98
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.98
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.98
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.98
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.98
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.98
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.98
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.98
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.98
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.98
KOG0589	426	consensus Serine/threonine protein kinase [General	99.98
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.98
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.98
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.98
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.98
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.98
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.98
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.98
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.97
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.97
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.97
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.97
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
PTZ00284	467	protein kinase; Provisional	99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.97
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
PLN00009	294	cyclin-dependent kinase A; Provisional	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.97
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.96
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
KOG0610	459	consensus Putative serine/threonine protein kinase	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.95
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.95
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.95
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.95
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.94
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.92
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.91
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.91
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.91
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.9
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.89
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.87
KOG1152	772	consensus Signal transduction serine/threonine kin	99.87
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.85
PRK09188	365	serine/threonine protein kinase; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.82
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.81
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
PRK10345	210	hypothetical protein; Provisional	99.76
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.74
PRK12274	218	serine/threonine protein kinase; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.7
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.69
smart00090	237	RIO RIO-like kinase.	99.69
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.69
PRK14879	211	serine/threonine protein kinase; Provisional	99.69
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.67
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.66
PLN03150	623	hypothetical protein; Provisional	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.63
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.58
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.56
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.55
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.51
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.5
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.49
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.48
PLN03150	623	hypothetical protein; Provisional	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.38
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.26
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.21
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.18
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.16
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.16
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG1243	690	consensus Protein kinase [General function predict	98.82
KOG3087	229	consensus Serine/threonine protein kinase [General	98.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.58
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.38
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.34
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.08
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.01
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.01
PRK09902	216	hypothetical protein; Provisional	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.96

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-76  Score=728.07  Aligned_cols=678  Identities=26%  Similarity=0.437  Sum_probs=398.7

Q ss_pred             CChHHHHHHHHHHHcCCCCC-CCCCccCCCCCCCCCCCCCccceEec-CCCEEEEEeCCCCCCCCC--------------
Q 004232           26 LQSSQTQVLLQLRKHLEYPK-QLEIWINHGADFCYISSSTQVNITCQ-DNFITELKIIGDKPSNVG--------------   89 (766)
Q Consensus        26 ~~~~~~~aLl~~k~~~~~~~-~l~~W~~~~~~~C~~~~~~~~gv~C~-~~~v~~l~l~~~~~~~~~--------------   89 (766)
                      ..+.|+.||++||+++.+|. .+.+|+.. .+||.|.     ||+|. .++|+.+++.++.+.+..              
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~-----gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQ-----GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCc-----ceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence            35689999999999998774 68899764 7899985     69996 468999998776433210              


Q ss_pred             ----CCCc------------cccc--------------------cccCCCcccCCcccccccCCCCCCEEeccccccccc
Q 004232           90 ----NFDG------------FASA--------------------NASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGS  133 (766)
Q Consensus        90 ----~~~~------------~~~~--------------------~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  133 (766)
                          .+.+            +..+                    ...++.|...+.+|..++++++|++|+|++|.+.+.
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence                0000            0000                    001222333345666677777777777777777777


Q ss_pred             CCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCC------
Q 004232          134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFP------  207 (766)
Q Consensus       134 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------  207 (766)
                      +|..|+++++|++|+|++|++.+.+|..++++++|++|+|++|.+++.+|..++++++|++|+|++|++++.+|      
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            77777777777777777777666666666666666666666666665555555555555555555555554444      


Q ss_pred             ------------------ccccCCCCCCEEEccCCccCCCCCC-CCCCCC------------------------CCEEEC
Q 004232          208 ------------------SSIQRISTLSDLDLSKNAISGSLPD-LSSLGS------------------------LNVLNL  244 (766)
Q Consensus       208 ------------------~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~------------------------L~~L~l  244 (766)
                                        ..+.++++|++|+|++|.+++.+|. +..+++                        |+.|++
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence                              4444455555555555555443332 222223                        333333


Q ss_pred             CCCCCCCCCCCC---CC------------------------------------------------CC-------------
Q 004232          245 SDNKLDSNLPKL---PR------------------------------------------------GL-------------  260 (766)
Q Consensus       245 s~N~l~~~~p~~---~~------------------------------------------------~l-------------  260 (766)
                      ++|.+++.+|..   ..                                                +|             
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            333332222110   00                                                11             


Q ss_pred             ----------------------------------------------------------cEEEccCCcCccCCcccccCCC
Q 004232          261 ----------------------------------------------------------VMAFLSNNSFSGEIPKQYGQLN  282 (766)
Q Consensus       261 ----------------------------------------------------------~~l~ls~N~l~~~~p~~~~~l~  282 (766)
                                                                                +.|++++|++++.+|..|..++
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  499 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS  499 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence                                                                      1122222222333333333344


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecC
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR  362 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~  362 (766)
                      +|+.|++++|++++.+|..+.++++|+.|+|++|.++|.+|..+..+++|+.|||++|+++|.+|..+..++.|+.++++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            44444444444444555555555555566666666666666656556666666666666666666666666666666666


Q ss_pred             CCcCCCCcCCCCC------------CCcchhhhhh-----ccccCCCCcccEEeehhHHHHHHHHHHHHhheeeeeccCC
Q 004232          363 GNCLSSNVQNQHP------------ESYCFEVRTE-----RNQAGSKNVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPR  425 (766)
Q Consensus       363 ~N~l~~~~~~~~p------------~~~~~~~~~~-----~~~~~~~~~~~~i~iiv~~~~~~~l~~~~~~~~~rr~~~~  425 (766)
                      +|.+++.+|....            ...|......     ........+..+++++++++++++++++++ +++||++..
T Consensus       580 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  658 (968)
T PLN00113        580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGF-VFIRGRNNL  658 (968)
T ss_pred             CCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHH-HHHHhhhcc
Confidence            6666554442110            0112211000     000001111112222222222222222222 222221111


Q ss_pred             cccccccccccccCCCCCCCChhhhhhhhhhhhhhhcCCCCCCCccccCHHHHHHHhcCCCcCCceecCCceeEEEEEe-
Q 004232          426 CTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-  504 (766)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-  504 (766)
                      . . +.     .....  +. .+.    ...         .....+.++++++.   ..|...++||+|+||.||+|+. 
T Consensus       659 ~-~-~~-----~~~~~--~~-~~~----~~~---------~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~  712 (968)
T PLN00113        659 E-L-KR-----VENED--GT-WEL----QFF---------DSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSI  712 (968)
T ss_pred             c-c-cc-----ccccc--cc-ccc----ccc---------ccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEEC
Confidence            0 0 00     00000  00 000    000         00001224445443   4567788999999999999986 


Q ss_pred             cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCC
Q 004232          505 ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG  584 (766)
Q Consensus       505 ~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~  584 (766)
                      .+|..||||+++.....    ...|++++++++|||||+++|+|.+.+        ..++|||||++|+|.+++++    
T Consensus       713 ~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~~--------~~~lv~Ey~~~g~L~~~l~~----  776 (968)
T PLN00113        713 KNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSEK--------GAYLIHEYIEGKNLSEVLRN----  776 (968)
T ss_pred             CCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcCC--------CCEEEEeCCCCCcHHHHHhc----
Confidence            57899999998654322    234688999999999999999998763        57999999999999999852    


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccc----ccccCCCCCCccc
Q 004232          585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN----SVGGKQEDPNSWE  660 (766)
Q Consensus       585 ~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~----~~~~~~~~~~~~~  660 (766)
                        ++|.++.+++.|+|+||+|||+.+.++|+|||+||+||+++.++.+++. ||.+.......    +..+..++.....
T Consensus       777 --l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~~~~~t~~y~aPE~~~~~  853 (968)
T PLN00113        777 --LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSAYVAPETRETK  853 (968)
T ss_pred             --CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCCCccccccccCcccccCC
Confidence              7899999999999999999998767799999999999999999988876 66654321111    1112222222334


Q ss_pred             CCCCCCCEeehhHHHHHHhcCCCccccCc---cchHHHHhhhhcccCccccccccccC--CCCHHHHHHHHHHHHHhccC
Q 004232          661 MTKLEDDVFSFGFMLLESVAGPSVAARKG---QFLQEELDSLNSQEGRQRLVDPVVMA--TSSLESLSIVISIANKCICS  735 (766)
Q Consensus       661 ~~~~~~DV~SfGvil~ElltG~~p~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~l~~~C~~~  735 (766)
                      .++.++|||||||++|||+||+.|++...   .....+............+.||.+..  ....+++.++.+++.+||+.
T Consensus       854 ~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~  933 (968)
T PLN00113        854 DITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTAT  933 (968)
T ss_pred             CCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcC
Confidence            56778999999999999999999985321   12223322222222334455555432  23446677889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh
Q 004232          736 ESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       736 ~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ||++||+|+||+++|+++.+
T Consensus       934 ~P~~RPt~~evl~~L~~~~~  953 (968)
T PLN00113        934 DPTARPCANDVLKTLESASR  953 (968)
T ss_pred             CchhCcCHHHHHHHHHHhhc
Confidence            99999999999999998865

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-54  Score=461.33  Aligned_cols=279  Identities=33%  Similarity=0.585  Sum_probs=234.4

Q ss_pred             CccccCHHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCccccccee
Q 004232          469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC  548 (766)
Q Consensus       469 ~~~~~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~  548 (766)
                      ..+.|++++++.||++|+..++||+|+||.||+|.+.+|..||||++........++|..|++++++++|||+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            35679999999999999999999999999999999999999999988765433145699999999999999999999999


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE  628 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~  628 (766)
                      .+.+       +..+||||||++|+|.++|+..... +++|..|++||.++|+||+|||+.+.|+|+||||||+|||||+
T Consensus       141 ~e~~-------~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  141 LEGG-------EHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             ecCC-------ceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence            9864       1379999999999999999876533 7899999999999999999999999899999999999999999


Q ss_pred             CCcEEEecCCCCccccc-ccc--------cccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC----ccchHHH
Q 004232          629 HRIAKLSDYGLSIVSED-INS--------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK----GQFLQEE  695 (766)
Q Consensus       629 ~~~~kl~DFGla~~~~~-~~~--------~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~----~~~~~~~  695 (766)
                      ++++||+|||+|+.... ...        .++..++.......+.|+|||||||+|+|++||+.|.+..    ......|
T Consensus       213 ~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w  292 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEW  292 (361)
T ss_pred             CCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHH
Confidence            99999999999976643 211        1122222222356778999999999999999999887742    2235666


Q ss_pred             HhhhhcccCcccccccccc-CCCCH-HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          696 LDSLNSQEGRQRLVDPVVM-ATSSL-ESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~-~~~~~-~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ...........+++||.+. ..... +++.++..+|.+|++.+|.+||+|.||+++|+.+..
T Consensus       293 ~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  293 AKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             HHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            6556666678999999986 44443 688899999999999999999999999999966543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-44  Score=381.03  Aligned_cols=248  Identities=22%  Similarity=0.399  Sum_probs=192.3

Q ss_pred             cCCceecCCceeEEEEEecCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ..+.||+|+||+||+|.+.....||||++.....  ...++|.+|+.+|++++|||||+++|+|.++.       ...++
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~-------~~~~i  117 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPP-------GSLCI  117 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-------CceEE
Confidence            3456999999999999997544599999976432  22679999999999999999999999999863       14899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCCCccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLSIVS  643 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGla~~~  643 (766)
                      |||||++|+|.+++++. ....++|..++++|.+||+||.|||+...  ||||||||+|||++.++ ++||+|||+++..
T Consensus       118 VtEy~~~GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~  194 (362)
T KOG0192|consen  118 VTEYMPGGSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREK  194 (362)
T ss_pred             EEEeCCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceee
Confidence            99999999999999874 23569999999999999999999999731  99999999999999997 9999999999765


Q ss_pred             ccc--ccc--ccC----CCCCCc--ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          644 EDI--NSV--GGK----QEDPNS--WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       644 ~~~--~~~--~~~----~~~~~~--~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ...  ...  .++    .++...  ...++.|+|||||||+||||+||+.||.....  ......+.....+..+.+.  
T Consensus       195 ~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~--~~~~~~v~~~~~Rp~~p~~--  270 (362)
T KOG0192|consen  195 VISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP--VQVASAVVVGGLRPPIPKE--  270 (362)
T ss_pred             ccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhcCCCCCCCcc--
Confidence            432  111  111    111112  23577899999999999999999999975443  2222222222222222221  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                             +...+..++.+||..||.+||+|.||+..|+.+..
T Consensus       271 -------~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  271 -------CPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             -------CCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence                   23447788999999999999999999999997764

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-44  Score=379.87  Aligned_cols=246  Identities=24%  Similarity=0.421  Sum_probs=195.3

Q ss_pred             CCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      +.+.+.||+|.||.||.|.++....||||.++... ...+.|.+|+++|++++|+|||+|+|+|...+        .++|
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~--------piyI  278 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQE--------PIYI  278 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCC--------ceEE
Confidence            34467899999999999999888899999998753 34578889999999999999999999999863        6899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      |||||++|+|.++|++.. +..+.-.+.+.++.|||+||+||+++   .+|||||.++|||++++..+||+|||+|+...
T Consensus       279 VtE~m~~GsLl~yLr~~~-~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  279 VTEYMPKGSLLDYLRTRE-GGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIG  354 (468)
T ss_pred             EEEecccCcHHHHhhhcC-CCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccC
Confidence            999999999999998733 34588889999999999999999998   79999999999999999999999999999654


Q ss_pred             cccc-cccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          645 DINS-VGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       645 ~~~~-~~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      +... ....+..|..|        ..++.|||||||||+||||+| |+.|++.  ....+.+..+ .  .-.++..|.. 
T Consensus       355 d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~--msn~ev~~~l-e--~GyRlp~P~~-  428 (468)
T KOG0197|consen  355 DDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPG--MSNEEVLELL-E--RGYRLPRPEG-  428 (468)
T ss_pred             CCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCC--CCHHHHHHHH-h--ccCcCCCCCC-
Confidence            4332 22222334444        445679999999999999999 6777653  2222222222 2  2234444432 


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                            +...+.+|+..||+.+|++||||+.+...|++...
T Consensus       429 ------CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  429 ------CPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             ------CCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence                  23348889999999999999999998888887653

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-43  Score=390.41  Aligned_cols=255  Identities=27%  Similarity=0.443  Sum_probs=202.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      +.+.+..+.||+|+||+||+|+..      +.+.||||.++..... ..++|+||+++|+.++|||||+|+|+|.+++  
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~--  562 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGD--  562 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC--
Confidence            455666789999999999999842      4567999999876654 7899999999999999999999999999874  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCC-------C----CCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPG-------K----VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-------~----~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                            ..+||+|||..|||.++|+.+.+.       .    +|+-.+.+.||.|||.||+||-++   .+|||||.++|
T Consensus       563 ------P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRN  633 (774)
T KOG1026|consen  563 ------PLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRN  633 (774)
T ss_pred             ------eeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhh
Confidence                  789999999999999999754321       2    378889999999999999999998   78999999999


Q ss_pred             eEEcCCCcEEEecCCCCccc--ccccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccch
Q 004232          624 ILLNEHRIAKLSDYGLSIVS--EDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFL  692 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~--~~~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~  692 (766)
                      +|+.++..+||+|||+++-.  .+++......-.|.+|        ..++.+||||||||+|||++| |+.|+....  .
T Consensus       634 CLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS--n  711 (774)
T KOG1026|consen  634 CLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS--N  711 (774)
T ss_pred             ceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc--h
Confidence            99999999999999999643  3444444333334444        456789999999999999998 788875321  1


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                      . ++.+....+..  +       +.++.+...+.+|+..||+.+|++||+|+||-..|+...+..+.
T Consensus       712 ~-EVIe~i~~g~l--L-------~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~  768 (774)
T KOG1026|consen  712 Q-EVIECIRAGQL--L-------SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPK  768 (774)
T ss_pred             H-HHHHHHHcCCc--c-------cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCcc
Confidence            2 22222222222  1       22334456689999999999999999999999999998765543

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-42  Score=371.56  Aligned_cols=245  Identities=22%  Similarity=0.432  Sum_probs=197.4

Q ss_pred             CcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.++||.|.||.||+|+++    ....||||.++... ...+++|..|..||.+++||||++|-|+....        +
T Consensus       632 ~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks--------~  703 (996)
T KOG0196|consen  632 KIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKS--------K  703 (996)
T ss_pred             EEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecC--------c
Confidence            56789999999999999964    35679999999764 44578899999999999999999999998875        3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .+++|+|||+||+|+.+|+++..  .++|.+...+.++||.||.||.+.   ++|||||.++|||++.+..+||+|||++
T Consensus       704 PvMIiTEyMENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLS  778 (996)
T KOG0196|consen  704 PVMIITEYMENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLS  778 (996)
T ss_pred             eeEEEhhhhhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccce
Confidence            78999999999999999998753  389999999999999999999997   8999999999999999999999999999


Q ss_pred             ccccccccccc---CCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccc
Q 004232          641 IVSEDINSVGG---KQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       641 ~~~~~~~~~~~---~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ++.++.....+   .+..|..|        ..++.++|||||||+|||.++ |.+|+..  ...++.+..+..   -.++
T Consensus       779 Rvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWd--mSNQdVIkaIe~---gyRL  853 (996)
T KOG0196|consen  779 RVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD--MSNQDVIKAIEQ---GYRL  853 (996)
T ss_pred             eecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccc--cchHHHHHHHHh---ccCC
Confidence            98765432211   12334444        456678999999999999776 8899752  223333333321   1222


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .       +++++...+.+||+.||++|-.+||.|.||+..|.+++.
T Consensus       854 P-------pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIr  893 (996)
T KOG0196|consen  854 P-------PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIR  893 (996)
T ss_pred             C-------CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence            2       223444568899999999999999999999999998774

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-40  Score=337.81  Aligned_cols=249  Identities=20%  Similarity=0.314  Sum_probs=191.5

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeec
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID  550 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~  550 (766)
                      ++++++++       .+.||+|..|+|||++.+ +++.+|+|.+... +....+++.+|++++++.+||+||.++|+|..
T Consensus        76 i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~  148 (364)
T KOG0581|consen   76 ISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYS  148 (364)
T ss_pred             cCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEe
Confidence            45555554       578999999999999864 7899999999543 45557889999999999999999999999998


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      .+       +.+.++||||.+|+|++++.+.+   .++....-+|+.+|.+||.|||+.  .+||||||||+|||++..|
T Consensus       149 ~~-------~~isI~mEYMDgGSLd~~~k~~g---~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskG  216 (364)
T KOG0581|consen  149 NG-------EEISICMEYMDGGSLDDILKRVG---RIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKG  216 (364)
T ss_pred             CC-------ceEEeehhhcCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCC
Confidence            74       14899999999999999987653   378888899999999999999964  2899999999999999999


Q ss_pred             cEEEecCCCCccccccc--cccc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc---chHHHHhhhhc
Q 004232          631 IAKLSDYGLSIVSEDIN--SVGG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ---FLQEELDSLNS  701 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~--~~~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~---~~~~~~~~~~~  701 (766)
                      ++||||||+++...+..  +..+    ..++......++.++||||||+.++|+++|+.|+.....   ...+.+..+..
T Consensus       217 eVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~  296 (364)
T KOG0581|consen  217 EVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVD  296 (364)
T ss_pred             CEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhc
Confidence            99999999997654321  1111    122223345678899999999999999999999875311   22233333322


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+ ..++.     .   .+.-.++..++..|+++||.+||+.+|+++.
T Consensus       297 ~p-pP~lP-----~---~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  297 EP-PPRLP-----E---GEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CC-CCCCC-----c---ccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            11 11111     1   1233457889999999999999999998765

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=331.69  Aligned_cols=193  Identities=26%  Similarity=0.459  Sum_probs=163.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..+|...+.||+|+||+||+|+. .++..||||++...  .+...+.+..|+.+|++++|||||+|++++++++      
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~------   82 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD------   82 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC------
Confidence            46788888999999999999995 46899999999766  4556777899999999999999999999999874      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC------CcE
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH------RIA  632 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~------~~~  632 (766)
                        .+|||||||.+|||.+|++.++   .++......++.|+|.||++||++   +||||||||+||||+..      -.+
T Consensus        83 --~i~lVMEyC~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~L  154 (429)
T KOG0595|consen   83 --FIYLVMEYCNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVL  154 (429)
T ss_pred             --eEEEEEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceE
Confidence              8999999999999999999764   388888999999999999999998   89999999999999864      468


Q ss_pred             EEecCCCCcccccccccccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          633 KLSDYGLSIVSEDINSVGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      ||+|||+|+.........+..+.|       .....|+.|+|+||.|+|+||+++|+.||+..
T Consensus       155 KIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  155 KIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             EecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            999999998876543222111111       22356788999999999999999999999743

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.4e-39  Score=344.38  Aligned_cols=240  Identities=21%  Similarity=0.377  Sum_probs=192.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..|+..+.||+|||+.||+++. .+|+.||+|++.+.   +....+.+.+||++.++++|||||+++++|++..      
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~------   91 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSN------   91 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCC------
Confidence            4588899999999999999996 88999999999763   3455778999999999999999999999999874      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ++|||.|+|++|+|..+++.+   ++++..+...+..||+.||.|||+.   +|+|||||-.|++|++++++||+|||
T Consensus        92 --nVYivLELC~~~sL~el~Krr---k~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFG  163 (592)
T KOG0575|consen   92 --NVYIVLELCHRGSLMELLKRR---KPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFG  163 (592)
T ss_pred             --ceEEEEEecCCccHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccc
Confidence              799999999999999988743   4699999999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccc-cccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDI-NSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~-~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ||...+.. ....+..++|.       .....+.++||||.||+||-|++|++||....  ..+....+...    +..-
T Consensus       164 LAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~--vkety~~Ik~~----~Y~~  237 (592)
T KOG0575|consen  164 LATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT--VKETYNKIKLN----EYSM  237 (592)
T ss_pred             eeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch--HHHHHHHHHhc----Cccc
Confidence            99776532 11111112222       22345678999999999999999999997432  33334444322    2222


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      |...       ...+.+|+.+.++.+|.+|||.++|+..
T Consensus       238 P~~l-------s~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  238 PSHL-------SAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             cccc-------CHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            2211       1236788999999999999999999865

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=351.01  Aligned_cols=262  Identities=20%  Similarity=0.372  Sum_probs=200.3

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEEecC--C--ce-EEEEEccC---ChhhhHHHHHHHHHHHHhCCCCCccccc
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRLEN--G--TS-VAIRCLPS---SKKYTVRNLKLRLDLLAKLRHPHLVCLL  545 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~--g--~~-vAvK~l~~---~~~~~~~~~~~e~~~l~~l~Hpniv~l~  545 (766)
                      ..+.|+-..++..+.++||+|+||.||+|++..  +  .. ||||..+.   ......++|.+|.++|++++|||||+++
T Consensus       148 ~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~y  227 (474)
T KOG0194|consen  148 PRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFY  227 (474)
T ss_pred             cccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            334455555666777999999999999998653  2  23 89999885   2356688999999999999999999999


Q ss_pred             ceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 004232          546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNIL  625 (766)
Q Consensus       546 g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NIL  625 (766)
                      |++.+..        ++|+|||+|+||+|+++|++...  .++..+++.++.++|.||+|||+.   .++||||.++|+|
T Consensus       228 GVa~~~~--------Pl~ivmEl~~gGsL~~~L~k~~~--~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL  294 (474)
T KOG0194|consen  228 GVAVLEE--------PLMLVMELCNGGSLDDYLKKNKK--SLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCL  294 (474)
T ss_pred             EEEcCCC--------ccEEEEEecCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHhe
Confidence            9998863        79999999999999999987643  589999999999999999999998   7899999999999


Q ss_pred             EcCCCcEEEecCCCCcccccccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          626 LNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       626 ld~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                      ++.++.+||+|||+++..............|..|        ..++.++|||||||++||+++ |..|+.....  .+..
T Consensus       295 ~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~--~~v~  372 (474)
T KOG0194|consen  295 YSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKN--YEVK  372 (474)
T ss_pred             ecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCH--HHHH
Confidence            9999999999999987654221111111122233        356679999999999999999 7788864322  2222


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                      ..+...+......+         .....+..++.+||..+|++||+|.+|.+.++.+....+.
T Consensus       373 ~kI~~~~~r~~~~~---------~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~  426 (474)
T KOG0194|consen  373 AKIVKNGYRMPIPS---------KTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEA  426 (474)
T ss_pred             HHHHhcCccCCCCC---------CCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcccc
Confidence            22222221111111         1123366778899999999999999999999998876554

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-39  Score=368.39  Aligned_cols=249  Identities=26%  Similarity=0.491  Sum_probs=196.1

Q ss_pred             CCCcCCceecCCceeEEEEEecC--C----ceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLEN--G----TSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~--g----~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +.++.+.||+|+||.||+|++.+  |    ..||||.++.. +.+...+|.+|..+|++++|||||+++|+|.+.+    
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~----  768 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSG----  768 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCC----
Confidence            45567899999999999999653  3    34999999765 4567889999999999999999999999999854    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                          ..++++|||++|||..+|++.++    ...+.-.+.+.++.+||+|+.||++.   ++|||||.++|+||++...+
T Consensus       769 ----~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~V  841 (1025)
T KOG1095|consen  769 ----PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVV  841 (1025)
T ss_pred             ----CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcE
Confidence                57999999999999999987632    23478889999999999999999997   79999999999999999999


Q ss_pred             EEecCCCCccc--ccccccccCCCCCCccc--------CCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhc
Q 004232          633 KLSDYGLSIVS--EDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNS  701 (766)
Q Consensus       633 kl~DFGla~~~--~~~~~~~~~~~~~~~~~--------~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~  701 (766)
                      ||+|||+|+..  .++++.......|..|+        .++.|+|||||||+|||++| |..||.........  ..+..
T Consensus       842 KIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~--~~~~~  919 (1025)
T KOG1095|consen  842 KIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVL--LDVLE  919 (1025)
T ss_pred             EEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHH--HHHHh
Confidence            99999999833  22333333334455554        45679999999999999999 67888744332211  11122


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .+   ++.-|..       +...+.+|+..||+.+|++||+|..|++.++.+.+
T Consensus       920 gg---RL~~P~~-------CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~  963 (1025)
T KOG1095|consen  920 GG---RLDPPSY-------CPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISN  963 (1025)
T ss_pred             CC---ccCCCCC-------CChHHHHHHHHHccCChhhCccHHHHHhhhhhhhh
Confidence            22   2222222       23347899999999999999999999998887765

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-39  Score=339.76  Aligned_cols=259  Identities=19%  Similarity=0.340  Sum_probs=196.7

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeec
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCID  550 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~  550 (766)
                      .+.+++....+++.+...||+|+||+||||+|..  .||||.++...  ....+.|+.|+.++++-||.||+-+.|||..
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            4446677777777888999999999999999853  59999998654  3467899999999999999999999999997


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      +         ...+|+.+|++-+|+.+|+..+  ..++-.+.+.||.|||+||.|||..   .|||||||+.||++++++
T Consensus       460 p---------~~AIiTqwCeGsSLY~hlHv~e--tkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~  525 (678)
T KOG0193|consen  460 P---------PLAIITQWCEGSSLYTHLHVQE--TKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDL  525 (678)
T ss_pred             C---------ceeeeehhccCchhhhhccchh--hhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCC
Confidence            6         3599999999999999998654  3478888999999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc-cc---------CCCCC---CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          631 IAKLSDYGLSIVSEDINSV-GG---------KQEDP---NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~-~~---------~~~~~---~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      .+||+|||++......... +.         ..++.   ..-.+++..+||||||||+|||+||.-||..... .+. +.
T Consensus       526 kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~-dqI-if  603 (678)
T KOG0193|consen  526 KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNR-DQI-IF  603 (678)
T ss_pred             cEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCCh-hhe-EE
Confidence            9999999998543221100 00         00000   0113467789999999999999999999862111 110 00


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       +.  +.-+-..|...   ....+.+.|.+|+..||..++++||.|.+|+.+|+++..
T Consensus       604 -mV--GrG~l~pd~s~---~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  604 -MV--GRGYLMPDLSK---IRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             -Ee--cccccCccchh---hhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence             01  11111112111   111234468889999999999999999999999888765

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-38  Score=323.41  Aligned_cols=243  Identities=22%  Similarity=0.351  Sum_probs=181.8

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChh-------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKK-------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~-------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      +.|-+.+.+|+|+||.|-+|. ..+|+.||||.+++...       .....+.+|+++|++++|||||++++++..++  
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d--  249 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD--  249 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC--
Confidence            456778999999999999997 56899999999975431       12345689999999999999999999998874  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---Cc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RI  631 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~  631 (766)
                            ..|||||||++|+|.+.+-.++   .+....-..++.|+..|+.|||+.   +|+||||||+|||+..+   ..
T Consensus       250 ------s~YmVlE~v~GGeLfd~vv~nk---~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~l  317 (475)
T KOG0615|consen  250 ------SSYMVLEYVEGGELFDKVVANK---YLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCL  317 (475)
T ss_pred             ------ceEEEEEEecCccHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceE
Confidence                  5799999999999999886543   256666678999999999999998   99999999999999755   78


Q ss_pred             EEEecCCCCcccccccccccCCCCCCcc----------cCCCCCCCEeehhHHHHHHhcCCCccccCccc--hHHHHhhh
Q 004232          632 AKLSDYGLSIVSEDINSVGGKQEDPNSW----------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF--LQEELDSL  699 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~~~~~~~~~----------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~--~~~~~~~~  699 (766)
                      +||+|||+|+.........+..++|.+.          ..+.-+.|+||+||+||-+++|.+||...-..  ..+.+.  
T Consensus       318 lKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~--  395 (475)
T KOG0615|consen  318 LKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQIL--  395 (475)
T ss_pred             EEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHh--
Confidence            9999999999875432211111111111          12224779999999999999999999743221  222111  


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .+ ... +.|...    .+--.+..+++.+.+..||++|||.+|+++.
T Consensus       396 --~G-~y~-f~p~~w----~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  396 --KG-RYA-FGPLQW----DRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             --cC-ccc-ccChhh----hhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence              11 111 111111    1223457899999999999999999999853

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-39  Score=337.38  Aligned_cols=255  Identities=23%  Similarity=0.398  Sum_probs=199.0

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEecC-CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ++|+-...+..+.+.||-|.||.||.|.|+. ...||||.++.. ....++|..|..+|+.++|||+|+|+|+|..+.  
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~Ep--  336 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEP--  336 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCC--
Confidence            4454445567788999999999999999864 678999999764 456789999999999999999999999999763  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            .+|||+|||.+|+|.+||++... ..+.--..+.+|.||+.||+||...   .+|||||.++|+|+.++..+||
T Consensus       337 ------PFYIiTEfM~yGNLLdYLRecnr-~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKv  406 (1157)
T KOG4278|consen  337 ------PFYIITEFMCYGNLLDYLRECNR-SEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKV  406 (1157)
T ss_pred             ------CeEEEEecccCccHHHHHHHhch-hhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEe
Confidence                  68999999999999999987543 2355566788999999999999987   7899999999999999999999


Q ss_pred             ecCCCCccccc-ccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          635 SDYGLSIVSED-INSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       635 ~DFGla~~~~~-~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +|||++++... +++..+....|..|        ..++.|+|||+|||+|||+.| |..|++.  .+... +-.+...  
T Consensus       407 ADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPG--idlSq-VY~LLEk--  481 (1157)
T KOG4278|consen  407 ADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQ-VYGLLEK--  481 (1157)
T ss_pred             eccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCC--ccHHH-HHHHHhc--
Confidence            99999987643 33222222223333        345679999999999999998 7888863  22211 1111111  


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      -.++-.       ++.|...+.+|+..||+.+|.+||+|+||.+.++.+.+
T Consensus       482 gyRM~~-------PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  482 GYRMDG-------PEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             cccccC-------CCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence            122222       23344568999999999999999999999999998765

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.6e-37  Score=335.10  Aligned_cols=253  Identities=22%  Similarity=0.355  Sum_probs=187.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||.||+|+.      .++..||||+++... ....+.+.+|+.+++++ +|||||+++|+|.+.+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN-   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC-
Confidence            46788899999999999999973      235689999997543 23456788999999999 8999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC--------------------------------------------------
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP--------------------------------------------------  583 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------------------------------------------  583 (766)
                            ..+++||||+++|+|.+++.....                                                  
T Consensus        85 ------~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T cd05102          85 ------GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTN  158 (338)
T ss_pred             ------CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccc
Confidence                  257999999999999998865321                                                  


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccccc---cc-
Q 004232          584 ---------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS---VG-  650 (766)
Q Consensus       584 ---------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~---~~-  650 (766)
                               ...+++.....++.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++.......   .+ 
T Consensus       159 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~  235 (338)
T cd05102         159 PPQETDDLWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGS  235 (338)
T ss_pred             cchhccccccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccC
Confidence                     12478888999999999999999997   899999999999999999999999999865322111   00 


Q ss_pred             ------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHH
Q 004232          651 ------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLS  723 (766)
Q Consensus       651 ------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  723 (766)
                            +..++......++.++|||||||++|||+| |..||....... .....+. .......  +   ..    ...
T Consensus       236 ~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~~~~~~~-~~~~~~~--~---~~----~~~  304 (338)
T cd05102         236 ARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-EFCQRLK-DGTRMRA--P---EN----ATP  304 (338)
T ss_pred             CCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-HHHHHHh-cCCCCCC--C---CC----CCH
Confidence                  111111122345678999999999999997 999986432211 1111111 1111110  1   11    123


Q ss_pred             HHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          724 IVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       724 ~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .+.+++.+||+.||.+||+|.||+++|+.+.+
T Consensus       305 ~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         305 EIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            47789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-38  Score=308.46  Aligned_cols=252  Identities=21%  Similarity=0.317  Sum_probs=189.2

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .+|++.++||+|+||.|||++ ..+|..||.|.++-.  +....+....|+.+|++++|||||++++.-...+.      
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~------   92 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDN------   92 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccc------
Confidence            457778899999999999998 678999999998732  34556788999999999999999999984333221      


Q ss_pred             ceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC--cccCCCCCCceEEcCCCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPG--FFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrdlk~~NILld~~~~~kl~D  636 (766)
                      +.++||||||..|||.+.++.-+ ..+.++....+++..|+++||.++|. ..|.  |+||||||.||+|+.+|.+|++|
T Consensus        93 evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~-~~~r~~VmHRDIKPaNIFl~~~gvvKLGD  171 (375)
T KOG0591|consen   93 EVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHS-KIPRGTVMHRDIKPANIFLTANGVVKLGD  171 (375)
T ss_pred             hhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhc-cccccceeeccCcchheEEcCCCceeecc
Confidence            24899999999999999886532 23457888999999999999999998 3345  99999999999999999999999


Q ss_pred             CCCCcccccccccccCC-CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSVGGKQ-EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~~~~~-~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+++..+...+.+... ++|.+       ...+..|+||||+||++|||+.-.+||..+  .....-..+ .++...++
T Consensus       172 fGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~L~~KI-~qgd~~~~  248 (375)
T KOG0591|consen  172 FGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLSLCKKI-EQGDYPPL  248 (375)
T ss_pred             chhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHHHHHHH-HcCCCCCC
Confidence            99998876544332211 12221       245678999999999999999999999744  222221222 12222222


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      .|        +.-...+..|+..|++.||..||+.-.++..++.
T Consensus       249 p~--------~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  249 PD--------EHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             cH--------HHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            21        1122346788999999999999996666666654

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=321.28  Aligned_cols=259  Identities=19%  Similarity=0.273  Sum_probs=190.6

Q ss_pred             cccCHHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhh---hHHHHHHHHHHHHhCCCCCcccccce
Q 004232          471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY---TVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       471 ~~~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~---~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      +.++.+++.     ......||+|++|.||+|.+ +|+.||||.++.....   ..+.+.+|+.+|++++|||||+++|+
T Consensus        13 ~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~   86 (283)
T PHA02988         13 KCIESDDID-----KYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGF   86 (283)
T ss_pred             eecCHHHcC-----CCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeee
Confidence            345555552     22236799999999999998 5889999999764332   25778899999999999999999999


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      +.+...    .....++||||+++|+|.+++.+..   .++|..+..++.+++.|++|||+..  +++||||||+||+++
T Consensus        87 ~~~~~~----~~~~~~lv~Ey~~~g~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~  157 (283)
T PHA02988         87 IIDIVD----DLPRLSLILEYCTRGYLREVLDKEK---DLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVT  157 (283)
T ss_pred             EEeccc----CCCceEEEEEeCCCCcHHHHHhhCC---CCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEEC
Confidence            876210    0135799999999999999997643   4889999999999999999999742  567999999999999


Q ss_pred             CCCcEEEecCCCCcccccccc--cc---cCCCCCCc--ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh
Q 004232          628 EHRIAKLSDYGLSIVSEDINS--VG---GKQEDPNS--WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~~~~~--~~---~~~~~~~~--~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~  700 (766)
                      +++.+||+|||+++.......  .+   +.+++...  ...++.++|||||||++|||+||+.||.....  ......+.
T Consensus       158 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~--~~~~~~i~  235 (283)
T PHA02988        158 ENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT--KEIYDLII  235 (283)
T ss_pred             CCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH--HHHHHHHH
Confidence            999999999999875432211  11   11111111  13466799999999999999999999974321  12222221


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .......+  |   ..    ....+.+++.+||+.||.+||||+||++.|+...+
T Consensus       236 ~~~~~~~~--~---~~----~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        236 NKNNSLKL--P---LD----CPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             hcCCCCCC--C---Cc----CcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence            11111111  1   01    12247789999999999999999999999998764

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.3e-37  Score=303.27  Aligned_cols=252  Identities=21%  Similarity=0.306  Sum_probs=179.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +.|+....+|+|+||+|||++. ++|+.||||++....  ..-.+-..||+++|++++|||+|.|+.+|....       
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkr-------   74 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKR-------   74 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcc-------
Confidence            3466778899999999999995 579999999996543  233455679999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .++||+|||..--|.+ |.+...  .++.....++..|+++|+.|+|++   ++|||||||+|||+..++.+|+||||+
T Consensus        75 -klhLVFE~~dhTvL~e-Le~~p~--G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGF  147 (396)
T KOG0593|consen   75 -KLHLVFEYCDHTVLHE-LERYPN--GVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGF  147 (396)
T ss_pred             -eeEEEeeecchHHHHH-HHhccC--CCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchh
Confidence             7899999999855544 443322  377888899999999999999998   799999999999999999999999999


Q ss_pred             Ccccccccc-----cccCC---CCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-Hh-----------h
Q 004232          640 SIVSEDINS-----VGGKQ---EDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-LD-----------S  698 (766)
Q Consensus       640 a~~~~~~~~-----~~~~~---~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-~~-----------~  698 (766)
                      |+.......     ++++.   ++. ..-..+....||||.||++.||+||.+-|+...+..+-. +.           +
T Consensus       148 AR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~  227 (396)
T KOG0593|consen  148 ARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQS  227 (396)
T ss_pred             hHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHH
Confidence            987653211     11111   110 111345667899999999999999998777544322111 10           1


Q ss_pred             hhcc-cC--cccccccc---ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          699 LNSQ-EG--RQRLVDPV---VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       699 ~~~~-~~--~~~~~d~~---~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +... +.  -..+++|.   .....-......+++++..|++.||++|++-+|++.
T Consensus       228 iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  228 IFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             HhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            1100 00  01111211   111100112235789999999999999999888763

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=328.08  Aligned_cols=252  Identities=23%  Similarity=0.397  Sum_probs=194.4

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ....+.+.||+|.||.|..+..+.+..||||.++... +..+++|.+|+++|.+++|||||+|+|+|..++        .
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De--------P  609 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDD--------P  609 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC--------c
Confidence            3455678999999999999999888999999998764 445689999999999999999999999999864        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +++|+|||++|+|.+++.++.... ++-....+|+.|||.||+||.+.   .+||||+.++|||+|.++++||+|||+++
T Consensus       610 icmI~EYmEnGDLnqFl~aheapt-~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR  685 (807)
T KOG1094|consen  610 LCMITEYMENGDLNQFLSAHELPT-AETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSR  685 (807)
T ss_pred             hHHHHHHHhcCcHHHHHHhccCcc-cccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCccccc
Confidence            899999999999999998875322 34455678999999999999997   79999999999999999999999999997


Q ss_pred             cc--ccccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcC--CCccccCccc-hHHHHhhhhcccCcccc
Q 004232          642 VS--EDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAG--PSVAARKGQF-LQEELDSLNSQEGRQRL  708 (766)
Q Consensus       642 ~~--~~~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG--~~p~~~~~~~-~~~~~~~~~~~~~~~~~  708 (766)
                      -.  .+.....++.-.|..|        ..++.++|||+|||++||+++-  ..|+....+. ..+....+........+
T Consensus       686 ~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~  765 (807)
T KOG1094|consen  686 NLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVV  765 (807)
T ss_pred             ccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCccee
Confidence            43  3444444444344444        3567899999999999999874  6777532221 11222222222211111


Q ss_pred             -ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          709 -VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       709 -~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                       ..|.       .+...+.+++.+||..|-.+||+|+++...||+-
T Consensus       766 l~~P~-------~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  766 LSRPP-------ACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             ccCCC-------cCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence             1121       2233477999999999999999999999999874

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=5e-38  Score=329.52  Aligned_cols=233  Identities=24%  Similarity=0.369  Sum_probs=177.3

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      .+-||+|+-|.||+|++. ++.||||+++..+       +.+|+-|++++|||||.|.|+|...        ..+|||||
T Consensus       129 LeWlGSGaQGAVF~Grl~-netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtqs--------PcyCIiME  192 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRLH-NETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQS--------PCYCIIME  192 (904)
T ss_pred             hhhhccCcccceeeeecc-CceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecCC--------ceeEEeee
Confidence            467999999999999997 5789999875443       3467889999999999999999986        37999999


Q ss_pred             ccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccc
Q 004232          568 FMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN  647 (766)
Q Consensus       568 y~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~  647 (766)
                      ||+.|-|...|+...   +++.........+||.||.|||.+   .|||||||+-||||..+-.+||+|||-++...+..
T Consensus       193 fCa~GqL~~VLka~~---~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~S  266 (904)
T KOG4721|consen  193 FCAQGQLYEVLKAGR---PITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKS  266 (904)
T ss_pred             ccccccHHHHHhccC---ccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhh
Confidence            999999999998654   366667778889999999999998   78999999999999999999999999998765542


Q ss_pred             cc---cc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHH
Q 004232          648 SV---GG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLE  720 (766)
Q Consensus       648 ~~---~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  720 (766)
                      +.   .+    ..++....++...|+||||||||||||+||..||..-....+  ++-+..  +...+.-|       ..
T Consensus       267 TkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI--IwGVGs--NsL~LpvP-------st  335 (904)
T KOG4721|consen  267 TKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI--IWGVGS--NSLHLPVP-------ST  335 (904)
T ss_pred             hhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhee--EEeccC--CcccccCc-------cc
Confidence            21   11    112222334556799999999999999999999863221111  111100  11111111       12


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          721 SLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       721 ~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      +..-+.-|+++||...|..||+|+||+..|+-+
T Consensus       336 cP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa  368 (904)
T KOG4721|consen  336 CPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIA  368 (904)
T ss_pred             CchHHHHHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence            223355678999999999999999999999754

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1e-36  Score=315.24  Aligned_cols=248  Identities=21%  Similarity=0.339  Sum_probs=185.0

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++...+.||+|+||.||++... +|...|||.+........+.+.+|+.+|++++|||||+++|.....+.      ..+
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~------~~~   91 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSREN------DEY   91 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccC------eee
Confidence            4556789999999999999864 499999999876543336779999999999999999999997544321      258


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFGla~  641 (766)
                      ++.|||+++|+|.+++.+.+.  .++.....++..+|++||+|||++   +|+||||||+|||++. ++.+||+|||+++
T Consensus        92 ~i~mEy~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen   92 NIFMEYAPGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             EeeeeccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccc
Confidence            999999999999999987653  489999999999999999999987   9999999999999999 7999999999997


Q ss_pred             cccc--cc-----ccccCC--CCCCccc-C--CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          642 VSED--IN-----SVGGKQ--EDPNSWE-M--TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       642 ~~~~--~~-----~~~~~~--~~~~~~~-~--~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      ....  ..     ...+++  ..|..+. .  ...++||||+||++.||+||++|+... .....+...+........+.
T Consensus       167 ~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-~~~~~~~~~ig~~~~~P~ip  245 (313)
T KOG0198|consen  167 KLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-FEEAEALLLIGREDSLPEIP  245 (313)
T ss_pred             ccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-cchHHHHHHHhccCCCCCCC
Confidence            6542  11     011111  1122222 1  223899999999999999999998742 11112222222211111221


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                           ...+    ....+++.+|++.||.+|||+++++..-..
T Consensus       246 -----~~ls----~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~  279 (313)
T KOG0198|consen  246 -----DSLS----DEAKDFLRKCFKRDPEKRPTAEELLEHPFL  279 (313)
T ss_pred             -----cccC----HHHHHHHHHHhhcCcccCcCHHHHhhChhh
Confidence                 1111    236688899999999999999999887554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-37  Score=310.07  Aligned_cols=234  Identities=24%  Similarity=0.366  Sum_probs=179.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.++||+|+||+||.++. ++++..|+|++++..   ....+....|..+|.+++||.||+++-.+.+.+     
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~-----   98 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEE-----   98 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCC-----
Confidence            46799999999999999999984 579999999998754   334677889999999999999999997777764     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .+|||+||+.||+|+.+|++.+.   ++......++.+|+.||.|||+.   +||||||||+|||||++|+++++||
T Consensus        99 ---kLylVld~~~GGeLf~hL~~eg~---F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDF  169 (357)
T KOG0598|consen   99 ---KLYLVLDYLNGGELFYHLQREGR---FSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDF  169 (357)
T ss_pred             ---eEEEEEeccCCccHHHHHHhcCC---cchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEecc
Confidence               79999999999999999986542   66777777899999999999997   8999999999999999999999999


Q ss_pred             CCCccccccc----ccccCCCCC----CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDIN----SVGGKQEDP----NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~----~~~~~~~~~----~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |+++......    +..++.++.    .....++..+|+||+||++|||++|.+||...  ........+.... .  ..
T Consensus       170 gL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~--~~~~~~~~I~~~k-~--~~  244 (357)
T KOG0598|consen  170 GLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE--DVKKMYDKILKGK-L--PL  244 (357)
T ss_pred             ccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc--cHHHHHHHHhcCc-C--CC
Confidence            9998543221    111222211    11235667899999999999999999999743  2333333333221 0  01


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                      -|..   .+    ..+.+++.+-+..||++|-
T Consensus       245 ~p~~---ls----~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  245 PPGY---LS----EEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             CCcc---CC----HHHHHHHHHHhccCHHHhc
Confidence            1111   11    2256888899999999994

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.5e-36  Score=316.94  Aligned_cols=255  Identities=19%  Similarity=0.295  Sum_probs=186.1

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .+.|+..++||+|.||.||||+ ..+|+.||+|++.-..  .....-..|||.||++++|||||+|.+...+..+     
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~-----  190 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLS-----  190 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCC-----
Confidence            3457777899999999999998 6789999999986543  4456678899999999999999999999887621     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ..+|||+|||++ ||.-++...  +..++..+...++.|++.||+|||++   +|+|||||.+|||||.+|.+||+|||
T Consensus       191 -~siYlVFeYMdh-DL~GLl~~p--~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFG  263 (560)
T KOG0600|consen  191 -GSIYLVFEYMDH-DLSGLLSSP--GVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFG  263 (560)
T ss_pred             -ceEEEEEecccc-hhhhhhcCC--CcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEecccc
Confidence             368999999998 888877542  34588899999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccccccccCC---------C-CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc----
Q 004232          639 LSIVSEDINSVGGKQ---------E-DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE----  703 (766)
Q Consensus       639 la~~~~~~~~~~~~~---------~-~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~----  703 (766)
                      ||++.........+.         + .......|+.+.|+||.||||.||++|++.+....... .+.+-.+.-..    
T Consensus       264 LAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~  343 (560)
T KOG0600|consen  264 LARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDY  343 (560)
T ss_pred             ceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhc
Confidence            998764433221111         1 11112456778999999999999999998876432211 11111111100    


Q ss_pred             C-cccc-----ccccccCCCC-HH----HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 G-RQRL-----VDPVVMATSS-LE----SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~-~~~~-----~d~~~~~~~~-~~----~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      + ..++     +.|...-... .|    ....+++|+...+..||++|.|+.+++.
T Consensus       344 W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  344 WPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             cccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence            0 0111     1111000000 01    1234688899999999999999998864

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-37  Score=323.08  Aligned_cols=246  Identities=24%  Similarity=0.422  Sum_probs=193.4

Q ss_pred             CCCcCCceecCCceeEEEEEecC-----CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLEN-----GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ...+.++||+|.||.||+|.+.+     ...||||..+.. .....+.|..|..+|+.++|||||+|+|+|.+.      
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~------  463 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ------  463 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc------
Confidence            34556889999999999998632     235899988773 455578899999999999999999999999874      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..|+|||.++-|.|+.||+.+..  .++......++.||..||+|||+.   .+|||||.++|||+...-.+|++||
T Consensus       464 ---P~WivmEL~~~GELr~yLq~nk~--sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDF  535 (974)
T KOG4257|consen  464 ---PMWIVMELAPLGELREYLQQNKD--SLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADF  535 (974)
T ss_pred             ---ceeEEEecccchhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeeccc
Confidence               68999999999999999987653  377788889999999999999997   7999999999999999999999999


Q ss_pred             CCCcccccccc-cccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINS-VGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~-~~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |+++..++... .+.++..|..|        ..++.++|||-|||.+||++. |..||..-..  .   +.+...+.-.+
T Consensus       536 GLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN--s---DVI~~iEnGeR  610 (974)
T KOG4257|consen  536 GLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN--S---DVIGHIENGER  610 (974)
T ss_pred             chhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc--c---ceEEEecCCCC
Confidence            99998765432 22233444444        345678999999999999986 7888852111  0   11111122222


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..-|.       .+...+..|+.+||++||.+||.|.|+...|.++.+
T Consensus       611 lP~P~-------nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  611 LPCPP-------NCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             CCCCC-------CCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            22222       234457899999999999999999999999998876

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.5e-35  Score=316.41  Aligned_cols=251  Identities=22%  Similarity=0.362  Sum_probs=181.3

Q ss_pred             cCCCcCCceecCCceeEEEEEecC-----------------CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN-----------------GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      ++|.+.+.||+|+||.||+|+..+                 +..||+|.+.... .....++.+|++++++++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            467788999999999999997532                 3479999987643 3345679999999999999999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCC----------------CCCCCCHHHHHHHHHHHHHHHHHHhc
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT----------------PGKVLNWSERLAVLIGVAKAVQFLHT  608 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~----------------~~~~l~~~~~~~i~~~ia~gL~yLH~  608 (766)
                      +|++.+.+        ..++||||+++|+|.+++....                ....++|.....++.|++.||+|||+
T Consensus        85 ~~~~~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~  156 (304)
T cd05096          85 LGVCVDED--------PLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS  156 (304)
T ss_pred             EEEEecCC--------ceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99998753        6899999999999999885431                11247888999999999999999999


Q ss_pred             CCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccccc--ccc--------CCCCCCcccCCCCCCCEeehhHHHHHH
Q 004232          609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS--VGG--------KQEDPNSWEMTKLEDDVFSFGFMLLES  678 (766)
Q Consensus       609 ~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~--~~~--------~~~~~~~~~~~~~~~DV~SfGvil~El  678 (766)
                      .   +|+||||||+|||+++++.+||+|||+++.......  ...        ..++......++.++|||||||++|||
T Consensus       157 ~---~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el  233 (304)
T cd05096         157 L---NFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEI  233 (304)
T ss_pred             C---CccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHH
Confidence            7   899999999999999999999999999865422110  000        011111123456789999999999999


Q ss_pred             hcC--CCccccCcc-chHHHHhhhhcccCc-cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          679 VAG--PSVAARKGQ-FLQEELDSLNSQEGR-QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       679 ltG--~~p~~~~~~-~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      +++  ..|+..... ............... .....+   ..    ....+.+++.+||+.||.+||||.||.+.|+
T Consensus       234 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         234 LMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRP---PP----CPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCC---CC----CCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            974  455543211 111111111111100 011111   11    1234788999999999999999999998876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=3.1e-36  Score=330.74  Aligned_cols=251  Identities=23%  Similarity=0.372  Sum_probs=186.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ..++|++.+.||+|+||.||+|+.      .++..||||+++... ....+.+.+|+.+++.+ +|||||+++|+|.+.+
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~  112 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGG  112 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC
Confidence            345788899999999999999973      246689999997543 33456788999999999 8999999999998764


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------------------------------------------
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------------------------------------------  583 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------------------------------------  583 (766)
                              ..++||||+++|+|.+++++...                                                 
T Consensus       113 --------~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  184 (375)
T cd05104         113 --------PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKAD  184 (375)
T ss_pred             --------cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccc
Confidence                    67999999999999998864321                                                 


Q ss_pred             -----------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          584 -----------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       584 -----------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                                             ...++|.....++.+|++||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a  261 (375)
T cd05104         185 KRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLA  261 (375)
T ss_pred             cccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccc
Confidence                                   12478899999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccc--c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccc
Q 004232          641 IVSEDINSV--G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       641 ~~~~~~~~~--~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      +........  .        +..++......++.++|||||||++|||+| |..|+...... ..... .......  ..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~-~~~~~-~~~~~~~--~~  337 (375)
T cd05104         262 RDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD-SKFYK-MIKEGYR--ML  337 (375)
T ss_pred             eeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch-HHHHH-HHHhCcc--CC
Confidence            654322110  0        111111112345678999999999999998 78887532211 11111 1111111  11


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .+.   ..    ...+.+|+.+||+.||++||+|+||+++|++.
T Consensus       338 ~~~---~~----~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         338 SPE---CA----PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             CCC---CC----CHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            111   11    12477899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-36  Score=315.03  Aligned_cols=244  Identities=20%  Similarity=0.338  Sum_probs=186.7

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      ++...+|.+.++||+|+|.+||+|+ ..++..+|||++.+..   ....+.+.+|-.+|.+| .||.||+|+--|.|.. 
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~-  147 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE-  147 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc-
Confidence            4456789999999999999999998 4579999999997642   23345678888999999 8999999998887764 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             .+|+|+||+++|+|.++|++.+.   ++......++.+|..||+|||++   +||||||||+|||||++|++|
T Consensus       148 -------sLYFvLe~A~nGdll~~i~K~Gs---fde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhik  214 (604)
T KOG0592|consen  148 -------SLYFVLEYAPNGDLLDLIKKYGS---FDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIK  214 (604)
T ss_pred             -------ceEEEEEecCCCcHHHHHHHhCc---chHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEE
Confidence                   79999999999999999987643   77777888999999999999998   999999999999999999999


Q ss_pred             EecCCCCcccccccccc-----------------cCCC----CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch
Q 004232          634 LSDYGLSIVSEDINSVG-----------------GKQE----DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL  692 (766)
Q Consensus       634 l~DFGla~~~~~~~~~~-----------------~~~~----~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~  692 (766)
                      |+|||-|+...+.....                 ++.+    +.......+..+|+|+||||||+|++|++||.....+.
T Consensus       215 ITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Neyl  294 (604)
T KOG0592|consen  215 ITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYL  294 (604)
T ss_pred             EeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHH
Confidence            99999998764322110                 0000    00111234557899999999999999999997654433


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .  +.++..-+  .++     ....+    ..+.+|+.+.+..||.+|++..||-+.
T Consensus       295 i--FqkI~~l~--y~f-----p~~fp----~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  295 I--FQKIQALD--YEF-----PEGFP----EDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             H--HHHHHHhc--ccC-----CCCCC----HHHHHHHHHHHccCccccccHHHHhhC
Confidence            2  22221110  111     11111    336789999999999999999777553

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=315.53  Aligned_cols=255  Identities=18%  Similarity=0.280  Sum_probs=187.7

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhH-HHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTV-RNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~-~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .+.|.+.+.||.|.||.||+|+ .++|+.||||+++..-.... -.=.||+..|++++ |||||++..++.+.+      
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~------   82 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDND------   82 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccC------
Confidence            4567788999999999999998 56799999999976432221 12357999999999 999999999998864      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ..+++|||||.. +|++.++++  .+.++......|+.||.+||+|+|.+   |+.|||+||+|||+.....+||+|||
T Consensus        83 -~~L~fVfE~Md~-NLYqLmK~R--~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFG  155 (538)
T KOG0661|consen   83 -RILYFVFEFMDC-NLYQLMKDR--NRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFG  155 (538)
T ss_pred             -ceEeeeHHhhhh-hHHHHHhhc--CCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccc
Confidence             379999999997 899998876  46799999999999999999999998   99999999999999999999999999


Q ss_pred             CCccccccccc----ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-HhhhhcccCccc--
Q 004232          639 LSIVSEDINSV----GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-LDSLNSQEGRQR--  707 (766)
Q Consensus       639 la~~~~~~~~~----~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-~~~~~~~~~~~~--  707 (766)
                      +|+........    .++    ++.......++.+.|+||+|||++|+.+-++-|+......+-+ +-++........  
T Consensus       156 LARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~  235 (538)
T KOG0661|consen  156 LAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWP  235 (538)
T ss_pred             cccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccch
Confidence            99876432211    111    1111223456778999999999999999988787433221111 111111110000  


Q ss_pred             ----------cccccccCCC----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 ----------LVDPVVMATS----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ----------~~d~~~~~~~----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                +.-|...+..    -..+..++++++.+|++.||.+|||+.|.+++
T Consensus       236 eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  236 EGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             hHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                      1111111100    01134567899999999999999999998875

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=2.1e-35  Score=285.07  Aligned_cols=249  Identities=20%  Similarity=0.299  Sum_probs=184.0

Q ss_pred             CCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhh--hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY--TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~--~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .|...+.+|+|.||.||+|+ ..+|+.||||+++.....  -.....|||+.|+.++|||||.+++++-+.+        
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~--------   74 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKS--------   74 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCC--------
Confidence            46667899999999999998 568999999999765332  2456789999999999999999999987764        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .+-||+|||+. ||...++...  ..++..+...++.++.+|++|||++   .|+||||||.|+|++++|.+||+|||+|
T Consensus        75 ~l~lVfEfm~t-dLe~vIkd~~--i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLA  148 (318)
T KOG0659|consen   75 NLSLVFEFMPT-DLEVVIKDKN--IILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLA  148 (318)
T ss_pred             ceEEEEEeccc-cHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccch
Confidence            68999999997 8998887653  5688889999999999999999998   7899999999999999999999999999


Q ss_pred             cccccccccc-----cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh---cccCcc--
Q 004232          641 IVSEDINSVG-----GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN---SQEGRQ--  706 (766)
Q Consensus       641 ~~~~~~~~~~-----~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~---~~~~~~--  706 (766)
                      +.........     ++.    +.......++...|+||.|||+.||+-|.+-+....+  .+.+..+.   ......  
T Consensus       149 r~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sD--idQL~~If~~LGTP~~~~W  226 (318)
T KOG0659|consen  149 RFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD--IDQLSKIFRALGTPTPDQW  226 (318)
T ss_pred             hccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCch--HHHHHHHHHHcCCCCcccC
Confidence            8764332211     111    1111224566788999999999999999866653322  22221111   111111  


Q ss_pred             ----ccc---------cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 ----RLV---------DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ----~~~---------d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          .+.         .+.... .-..+...+++++...+.+||.+|.+..|++++
T Consensus       227 P~~~~lpdY~~~~~~P~~~~~~-lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  227 PEMTSLPDYVKIQQFPKPPLNN-LFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             ccccccccHHHHhcCCCCcccc-ccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence                111         111100 001223446899999999999999999998765

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=9.7e-36  Score=326.56  Aligned_cols=252  Identities=24%  Similarity=0.368  Sum_probs=186.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ..++|++.+.||+|+||.||+|+.      .++..||||+++... ....+.+.+|+++++++ +|||||+++|+|.+.+
T Consensus        36 ~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~  115 (374)
T cd05106          36 PRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGG  115 (374)
T ss_pred             cHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCC
Confidence            445788899999999999999873      234579999997543 33456788999999999 8999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCC--------------------------------------------------
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENT--------------------------------------------------  582 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~--------------------------------------------------  582 (766)
                              ..++||||+++|+|.+++++..                                                  
T Consensus       116 --------~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (374)
T cd05106         116 --------PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPV  187 (374)
T ss_pred             --------CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCc
Confidence                    6899999999999999885421                                                  


Q ss_pred             -----------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccc
Q 004232          583 -----------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED  645 (766)
Q Consensus       583 -----------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~  645 (766)
                                       ....+++....+++.||+.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~  264 (374)
T cd05106         188 SSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMN  264 (374)
T ss_pred             cccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccC
Confidence                             012478888999999999999999997   899999999999999999999999999865322


Q ss_pred             ccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          646 INS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       646 ~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      ...  ..        +..++......++.++|||||||++|||++ |+.||......  ..+........  +...+.  
T Consensus       265 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~--~~~~~~~~~~~--~~~~~~--  338 (374)
T cd05106         265 DSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN--SKFYKMVKRGY--QMSRPD--  338 (374)
T ss_pred             CcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc--HHHHHHHHccc--CccCCC--
Confidence            111  00        001111112345678999999999999997 99998642211  11111111110  111111  


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                       ..    ...+.+++.+||+.||.+||++.+|+++|+++.
T Consensus       339 -~~----~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         339 -FA----PPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             -CC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence             11    134778999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=5.2e-35  Score=313.95  Aligned_cols=247  Identities=22%  Similarity=0.370  Sum_probs=186.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|+..+.||+|+||.||+|++. +|+    .||||.++... ....+++.+|+.+++.++||||++++|+|...     
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-----   81 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   81 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-----
Confidence            45888999999999999999853 344    38999987543 34467888999999999999999999999764     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++|+||+++|+|.+++.+..  ..+++...+.++.||+.||+|||+.   +|+||||||+||++++++.+||+|
T Consensus        82 ----~~~~v~e~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~D  152 (316)
T cd05108          82 ----TVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITD  152 (316)
T ss_pred             ----CceeeeecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcc
Confidence                4689999999999999997653  2478999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc----c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV----G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~----~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........    .      +..++.......+.++|||||||++|||+| |+.|+......   .+..+....  
T Consensus       153 fG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~---~~~~~~~~~--  227 (316)
T cd05108         153 FGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS---EISSILEKG--  227 (316)
T ss_pred             ccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH---HHHHHHhCC--
Confidence            9999764321110    0      001111112345668999999999999998 99888643221   111221111  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....+.   ..    ...+.+++.+||+.+|.+||+|.+|+..+..+..
T Consensus       228 ~~~~~~~---~~----~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         228 ERLPQPP---IC----TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             CCCCCCC---CC----CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence            1111111   11    1236789999999999999999999999987764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-36  Score=326.79  Aligned_cols=241  Identities=24%  Similarity=0.373  Sum_probs=189.2

Q ss_pred             CCceecCCceeEEEEEec-C----CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          488 SAIMGEGSYGKLYKGRLE-N----GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~-~----g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..+||+|+||+||||.|- .    ..+||||++.... .....++.+|+-+|++++|||+++|+|+|..+         .
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s---------~  771 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLS---------T  771 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccc---------h
Confidence            578999999999999863 3    3579999886543 44568899999999999999999999999875         4


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +.||++|||.|.|.+|++.++.  .+.....+.+..|||+||.|||.+   .++||||.++|||+.+-.++||+|||+++
T Consensus       772 ~qlvtq~mP~G~LlDyvr~hr~--~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~  846 (1177)
T KOG1025|consen  772 LQLVTQLMPLGCLLDYVREHRD--NIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAK  846 (1177)
T ss_pred             HHHHHHhcccchHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhh
Confidence            7899999999999999987653  477888999999999999999987   78999999999999999999999999998


Q ss_pred             ccccccc-c-ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          642 VSEDINS-V-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       642 ~~~~~~~-~-~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ....... . ...+..+..|        ..++.++|||||||.+||++| |..|++...   .+++....+.+.  ++.-
T Consensus       847 ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~---~~eI~dlle~ge--RLsq  921 (1177)
T KOG1025|consen  847 LLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP---AEEIPDLLEKGE--RLSQ  921 (1177)
T ss_pred             ccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC---HHHhhHHHhccc--cCCC
Confidence            7643221 1 1122233333        457789999999999999998 788886432   222333332221  2333


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      |.+       +...+..++.+||..|++.||+|+++.....+++
T Consensus       922 Ppi-------CtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~a  958 (1177)
T KOG1025|consen  922 PPI-------CTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMA  958 (1177)
T ss_pred             CCC-------ccHHHHHHHHHHhccCcccCccHHHHHHHHHHHh
Confidence            322       2334778899999999999999999988887765

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=6.6e-35  Score=303.18  Aligned_cols=242  Identities=22%  Similarity=0.403  Sum_probs=184.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|++.++..+|+|.+.... ...+++.+|++++++++||||++++++|.+.+        ..
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~   74 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK--------PL   74 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCC--------CE
Confidence            4577788999999999999998888899999886443 23467889999999999999999999987653        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.++++...  ..++|..+..++.+++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        75 ~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          75 YIVTEFMENGCLLNYLRQRQ--GKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccc
Confidence            99999999999999987543  2478999999999999999999987   899999999999999999999999999865


Q ss_pred             ccccccc---c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSV---G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~---~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .......   .      ...++.......+.++|||||||++|||++ |+.|+.....  .+....+....   ....|.
T Consensus       150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~--~~~~~~i~~~~---~~~~~~  224 (256)
T cd05114         150 VLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN--YEVVEMISRGF---RLYRPK  224 (256)
T ss_pred             cCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHCCC---CCCCCC
Confidence            3221110   0      011111112334568999999999999999 8888864322  22222221111   111111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      .   .    ...+.+++.+||+.+|++||+|.|+++.|
T Consensus       225 ~---~----~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         225 L---A----SMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             C---C----CHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            1   1    12478999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.2e-35  Score=309.41  Aligned_cols=240  Identities=29%  Similarity=0.502  Sum_probs=174.9

Q ss_pred             cCCceecCCceeEEEEEec-----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          487 MSAIMGEGSYGKLYKGRLE-----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..+.||.|.||.||+|.+.     .+..|+||.++... ....+.+.+|++.+++++||||++++|+|...+        
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~--------   74 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENE--------   74 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSS--------
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccc--------
Confidence            3578999999999999976     36789999996543 344788999999999999999999999999543        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+++|+|.++|.... ...+++..+..++.|||+||+|||+.   +++||||+++||++++++.+||+|||++
T Consensus        75 ~~~lv~e~~~~g~L~~~L~~~~-~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~  150 (259)
T PF07714_consen   75 PLFLVMEYCPGGSLDDYLKSKN-KEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLS  150 (259)
T ss_dssp             SEEEEEE--TTEBHHHHHHHTC-TTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTG
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence            5899999999999999998762 23589999999999999999999997   7999999999999999999999999998


Q ss_pred             ccccccccc--ccCCCCCCc--------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccc
Q 004232          641 IVSEDINSV--GGKQEDPNS--------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       641 ~~~~~~~~~--~~~~~~~~~--------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      .........  ......+..        ...++.++||||||+++||++| |+.|+...  ........+ ........ 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~--~~~~~~~~~-~~~~~~~~-  226 (259)
T PF07714_consen  151 RPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY--DNEEIIEKL-KQGQRLPI-  226 (259)
T ss_dssp             EETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS--CHHHHHHHH-HTTEETTS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc-ccccccee-
Confidence            655211110  000001111        1234668999999999999999 67777533  222222222 11111111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       +   ...    ...+.+++.+||+.+|.+||+|.+|++.|
T Consensus       227 -~---~~~----~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  227 -P---DNC----PKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             -B---TTS----BHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             -c---cch----hHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence             1   111    12367899999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=5.7e-35  Score=305.60  Aligned_cols=246  Identities=21%  Similarity=0.348  Sum_probs=184.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|.+.    .+..||+|.++... ....+.+.+|+.++++++||||++++|++...+     
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----   79 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGN-----   79 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCC-----
Confidence            45788899999999999999753    46789999987653 334567899999999999999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++....  ..++|..++.++.+++.|++|||+.   +++||||||+||+++.++.+|++||
T Consensus        80 ---~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~df  151 (266)
T cd05064          80 ---TMMIVTEYMSNGALDSFLRKHE--GQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGF  151 (266)
T ss_pred             ---CcEEEEEeCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCC
Confidence               6899999999999999987543  3488999999999999999999987   8999999999999999999999999


Q ss_pred             CCCcccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |.+..........         ...++.......+.++|||||||++||+++ |+.|+.....  ......+. ...  .
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~--~~~~~~~~-~~~--~  226 (266)
T cd05064         152 RRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG--QDVIKAVE-DGF--R  226 (266)
T ss_pred             cccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHHH-CCC--C
Confidence            9875432111000         011111122345668999999999999775 9999864322  11111111 111  1


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      ...+   .    .....+.+++.+||+.+|.+||+++||.+.|..+
T Consensus       227 ~~~~---~----~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         227 LPAP---R----NCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             CCCC---C----CCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            1111   1    1123477899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-35  Score=283.10  Aligned_cols=243  Identities=18%  Similarity=0.313  Sum_probs=190.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|.||.||.|+. +++..||+|++.+..   ....+++.+|++|-+.++||||++++|++.+..     
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~-----   95 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK-----   95 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccc-----
Confidence            46899999999999999999985 468899999996643   233578999999999999999999999999864     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .+||++||.++|++...|++.. ...++......++.|+|.|+.|+|..   .|+||||||+|+|++..+..||+||
T Consensus        96 ---riyLilEya~~gel~k~L~~~~-~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdf  168 (281)
T KOG0580|consen   96 ---RIYLILEYAPRGELYKDLQEGR-MKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADF  168 (281)
T ss_pred             ---eeEEEEEecCCchHHHHHHhcc-cccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCC
Confidence               7999999999999999998543 34477777888999999999999996   8999999999999999999999999


Q ss_pred             CCCcccccccccc------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          638 GLSIVSEDINSVG------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       638 Gla~~~~~~~~~~------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      |-+.......+..      +-+++.......+...|+|++||+.||++.|.+||....  ..+...++..    .++.+|
T Consensus       169 GwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~--~~etYkrI~k----~~~~~p  242 (281)
T KOG0580|consen  169 GWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS--HSETYKRIRK----VDLKFP  242 (281)
T ss_pred             CceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh--hHHHHHHHHH----ccccCC
Confidence            9986654322111      112222333445567899999999999999999997433  2222333332    234444


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....       ..+.+++.+|+..+|.+|.+..||+..
T Consensus       243 ~~is-------~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  243 STIS-------GGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             cccC-------hhHHHHHHHHhccCccccccHHHHhhh
Confidence            2221       226789999999999999999999754

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=312.26  Aligned_cols=241  Identities=24%  Similarity=0.376  Sum_probs=184.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC----hh-hhHHHHHHHHHHHHhCC-CCCcccccceeecCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS----KK-YTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGG  553 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~----~~-~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~  553 (766)
                      ..+.|.+.+.||+|+||+||.|+. .+|..||||.+...    .. ...+.+.+|+.++++++ ||||++++.++..+. 
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~-   93 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT-   93 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC-
Confidence            356788999999999999999974 57899999977653    12 23556778999999999 999999999988764 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIA  632 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~  632 (766)
                             .+++||||+.+|+|.+++.+..   .+......+++.|++.|++|||++   +|+||||||+|||+|.+ +++
T Consensus        94 -------~~~ivmEy~~gGdL~~~i~~~g---~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~  160 (370)
T KOG0583|consen   94 -------KIYIVMEYCSGGDLFDYIVNKG---RLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNL  160 (370)
T ss_pred             -------eEEEEEEecCCccHHHHHHHcC---CCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCE
Confidence                   6999999999999999998743   377788899999999999999997   89999999999999999 999


Q ss_pred             EEecCCCCcccc-ccccc----cc---CCCCCCcc-c-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          633 KLSDYGLSIVSE-DINSV----GG---KQEDPNSW-E-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       633 kl~DFGla~~~~-~~~~~----~~---~~~~~~~~-~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      ||+|||++.... .....    ++   ..++.... . +...++||||+||+||.|++|+.||+...  .......+...
T Consensus       161 Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~--~~~l~~ki~~~  238 (370)
T KOG0583|consen  161 KLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN--VPNLYRKIRKG  238 (370)
T ss_pred             EEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc--HHHHHHHHhcC
Confidence            999999998762 21111    11   11111111 2 33468899999999999999999998532  22222222211


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL  747 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~  747 (766)
                        ...+  |....      -..+..++.+|++.||.+|+++.+|+
T Consensus       239 --~~~~--p~~~~------S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  239 --EFKI--PSYLL------SPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             --CccC--CCCcC------CHHHHHHHHHHcCCCcccCCCHHHHh
Confidence              1111  11110      12367899999999999999999998

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9e-35  Score=299.23  Aligned_cols=251  Identities=20%  Similarity=0.337  Sum_probs=186.7

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+|++.++||.|.-++||+|+ .+.++.||||++.-.+- ...+.+.+|+..|+.++||||++++..|...        
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~--------   96 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVD--------   96 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEec--------
Confidence            3578999999999999999998 45789999999975543 3468899999999999999999999887765        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..+|+||.||.+|++.+.++..-+ ..++...+..|.+++.+||.|||++   |-||||+|+.|||||++|.+||+|||+
T Consensus        97 ~~LWvVmpfMa~GS~ldIik~~~~-~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgv  172 (516)
T KOG0582|consen   97 SELWVVMPFMAGGSLLDIIKTYYP-DGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGV  172 (516)
T ss_pred             ceeEEeehhhcCCcHHHHHHHHcc-ccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCcee
Confidence            379999999999999998876432 2378888889999999999999998   889999999999999999999999999


Q ss_pred             Ccccccccc-cc---cCCCCCCcc----------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          640 SIVSEDINS-VG---GKQEDPNSW----------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       640 a~~~~~~~~-~~---~~~~~~~~~----------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      +....+... ..   .+.....+|          ..|+.|+||||||++..|+.+|..||...... ......+......
T Consensus       173 sa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPm-kvLl~tLqn~pp~  251 (516)
T KOG0582|consen  173 SASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPM-KVLLLTLQNDPPT  251 (516)
T ss_pred             eeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChH-HHHHHHhcCCCCC
Confidence            754322111 00   011111223          34567999999999999999999999754321 1111122111100


Q ss_pred             cc--cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QR--LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~--~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..  ..|...    ....-..+.+++..|+++||++|||++++++.
T Consensus       252 ~~t~~~~~d~----~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  252 LLTSGLDKDE----DKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             cccccCChHH----hhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence            00  011100    01112346788899999999999999998864

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.2e-34  Score=304.88  Aligned_cols=252  Identities=23%  Similarity=0.405  Sum_probs=190.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|.+.+.||+|+||+||++..      .++..+|+|.+........+.+.+|++++++++||||++++++|...+    
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   80 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD----   80 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC----
Confidence            4678889999999999999974      235679999987766566778999999999999999999999988653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP----------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                          ..++||||+++|+|.+++.....          ...+++..+..++.+++.||+|||+.   +++||||||+||++
T Consensus        81 ----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili  153 (288)
T cd05093          81 ----PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLV  153 (288)
T ss_pred             ----ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEE
Confidence                68999999999999999875421          12489999999999999999999987   89999999999999


Q ss_pred             cCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHH
Q 004232          627 NEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEE  695 (766)
Q Consensus       627 d~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~  695 (766)
                      ++++.+||+|||+++.......  ..        +..++......++.++|||||||++|||+| |..|+.....  ...
T Consensus       154 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~--~~~  231 (288)
T cd05093         154 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NEV  231 (288)
T ss_pred             ccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHH
Confidence            9999999999999864322110  00        111111112345668999999999999999 8888753321  111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ...+.. ......  +   ...+    ..+.+++.+||+.+|.+||++.||.+.|+.+.+..
T Consensus       232 ~~~i~~-~~~~~~--~---~~~~----~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         232 IECITQ-GRVLQR--P---RTCP----KEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             HHHHHc-CCcCCC--C---CCCC----HHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            111211 111110  0   1111    23789999999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-35  Score=310.96  Aligned_cols=242  Identities=21%  Similarity=0.394  Sum_probs=189.6

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..|..-..||+|+-|.||.|+ ..+++.||||++........+-+..|+.+|+..+|+|||+++..|...+        .
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~d--------e  344 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGD--------E  344 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccc--------e
Confidence            345556789999999999997 5578999999998877777778899999999999999999999877653        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +|.|||||++|+|.+.+.+.    .++..+...|+.++..||+|||..   +|+|||||++|||++.++.+||+|||++.
T Consensus       345 LWVVMEym~ggsLTDvVt~~----~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFca  417 (550)
T KOG0578|consen  345 LWVVMEYMEGGSLTDVVTKT----RMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCA  417 (550)
T ss_pred             eEEEEeecCCCchhhhhhcc----cccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeee
Confidence            99999999999999988643    378899999999999999999998   89999999999999999999999999986


Q ss_pred             ccccccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........+--...+|        ..+..|.||||+|++.+||+-|.+||-.+... .. +.-+. .....++..+..
T Consensus       418 qi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Pl-rA-lyLIa-~ng~P~lk~~~k  494 (550)
T KOG0578|consen  418 QISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-RA-LYLIA-TNGTPKLKNPEK  494 (550)
T ss_pred             ccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChH-HH-HHHHh-hcCCCCcCCccc
Confidence            554433221111122334        34567999999999999999999998753322 11 11111 122333333322


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .       -..+.++..+|++.|+.+||++.|+++.
T Consensus       495 l-------S~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  495 L-------SPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             c-------CHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence            1       2347788999999999999999999875

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=316.40  Aligned_cols=240  Identities=23%  Similarity=0.394  Sum_probs=185.2

Q ss_pred             CcCCceecCCceeEEEEEecC----CceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.+.||+|.||+|++|.|..    ...||||++...... ...+|.+|+.+|-+|+|||+|+|||+..+.         
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~q---------  183 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQ---------  183 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccc---------
Confidence            345789999999999999852    346999999876654 678999999999999999999999998863         


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .++||+|.++.|+|.+.|++ .....+-......++.|||.||+||.+.   +.|||||.++|+||.....+||+||||.
T Consensus       184 p~mMV~ELaplGSLldrLrk-a~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLm  259 (1039)
T KOG0199|consen  184 PAMMVFELAPLGSLLDRLRK-AKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLM  259 (1039)
T ss_pred             hhhHHhhhcccchHHHHHhh-ccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccce
Confidence            57999999999999999987 3334466677788999999999999997   7899999999999999999999999998


Q ss_pred             cccccc---cccccCCCCCCccc--------CCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccCcccc
Q 004232          641 IVSEDI---NSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       641 ~~~~~~---~~~~~~~~~~~~~~--------~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      +.....   +..+.....|..|.        .++.++|||+|||++|||+|+ ..|+.....  ...+..+.   ...++
T Consensus       260 RaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g--~qIL~~iD---~~erL  334 (1039)
T KOG0199|consen  260 RALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG--IQILKNID---AGERL  334 (1039)
T ss_pred             eccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH--HHHHHhcc---ccccC
Confidence            765432   21122223444453        455689999999999999995 667653221  12222221   22223


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      ..|       ..+.+.+.++++.||+.+|.+||+|..|.+.+
T Consensus       335 pRP-------k~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  335 PRP-------KYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             CCC-------CCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence            222       23445689999999999999999999998554

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.7e-34  Score=312.47  Aligned_cols=252  Identities=22%  Similarity=0.346  Sum_probs=187.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      ++|++.+.||+|+||.||+|+.      .+++.||+|+++... ....+.+.+|++++.++ +||||++++++|...+  
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~--   84 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG--   84 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC--
Confidence            4688899999999999999963      235789999987543 23346678899999999 8999999999987654  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC---------------------------------------------------
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------------------------------------  583 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------------------------------------  583 (766)
                           ..++++|||+++|+|.+++.....                                                   
T Consensus        85 -----~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
T cd05054          85 -----GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEED  159 (337)
T ss_pred             -----CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccc
Confidence                 368999999999999998854211                                                   


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc-------
Q 004232          584 -------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-------  649 (766)
Q Consensus       584 -------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~-------  649 (766)
                             ...++|..+..++.+|+.||+|||+.   +|+||||||+||++++++.+||+|||++.........       
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~  236 (337)
T cd05054         160 EEGDELYKEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDAR  236 (337)
T ss_pred             hhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCC
Confidence                   12578999999999999999999987   8999999999999999999999999999654221110       


Q ss_pred             ---ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHH
Q 004232          650 ---GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIV  725 (766)
Q Consensus       650 ---~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  725 (766)
                         .+..++......++.++|||||||++|||++ |..|+......  +.............  .+       ......+
T Consensus       237 ~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~~~~--~~-------~~~~~~~  305 (337)
T cd05054         237 LPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQID--EEFCRRLKEGTRMR--AP-------EYATPEI  305 (337)
T ss_pred             CCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCcc--HHHHHHHhccCCCC--CC-------ccCCHHH
Confidence               0111111122445678999999999999998 99888632211  11111111111110  11       1112347


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          726 ISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       726 ~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .+++.+||+.+|++||++.||+++|+.+.+
T Consensus       306 ~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         306 YSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            889999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.3e-34  Score=300.03  Aligned_cols=245  Identities=20%  Similarity=0.397  Sum_probs=186.7

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|...++..||+|.+..... ..+.+.+|+.++++++||||+++++++.+.+        ..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~   76 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEE--------PI   76 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC--------Cc
Confidence            56888899999999999999988888999999865432 3578899999999999999999999887653        57


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++++.. ...+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        77 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~  152 (261)
T cd05072          77 YIITEYMAKGSLLDFLKSDE-GGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARV  152 (261)
T ss_pred             EEEEecCCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCcccee
Confidence            99999999999999987543 23578999999999999999999987   899999999999999999999999999976


Q ss_pred             cccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........         ...++.......+.++|||||||++|||+| |+.|+......  .....+.. ....    +.
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~-~~~~----~~  225 (261)
T cd05072         153 IEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS--DVMSALQR-GYRM----PR  225 (261)
T ss_pred             cCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH--HHHHHHHc-CCCC----CC
Confidence            53321110         011111112334567899999999999999 88888643221  11111111 1000    10


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                       ....    ...+.+++.+||..+|++||++++|.+.|++
T Consensus       226 -~~~~----~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         226 -MENC----PDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             -CCCC----CHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence             0111    1236789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.2e-34  Score=304.07  Aligned_cols=257  Identities=21%  Similarity=0.338  Sum_probs=185.5

Q ss_pred             CCcCCceecCCceeEEEEEe-----cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |+..+.||+|+||+||++.+     .++..||+|.++... ....+.+.+|++++++++||||++++++|.....     
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~-----   80 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGG-----   80 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC-----
Confidence            37788999999999988653     357889999987543 2345678899999999999999999999876431     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ...++||||+++|+|.+++.+.    .+++..+..++.+++.|++|||+.   +|+||||||+||++++++.+||+|||
T Consensus        81 -~~~~lv~e~~~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg  152 (283)
T cd05080          81 -KGLQLIMEYVPLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFG  152 (283)
T ss_pred             -ceEEEEecCCCCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecc
Confidence             3579999999999999998753    389999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc------c-----cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---cC
Q 004232          639 LSIVSEDINSV------G-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---EG  704 (766)
Q Consensus       639 la~~~~~~~~~------~-----~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---~~  704 (766)
                      +++........      .     ...++.......+.++|||||||++|||+||..|+........+........   ..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd05080         153 LAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVR  232 (283)
T ss_pred             cccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhh
Confidence            98654321110      0     0011111113346689999999999999999988753221111111000000   00


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ..+..+.......+......+.+++.+||+.+|++||+|++|+++|+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         233 LIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            01111111111111112245788999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=9.7e-35  Score=320.07  Aligned_cols=252  Identities=22%  Similarity=0.337  Sum_probs=185.8

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCC-CCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~  552 (766)
                      ..+.|.+.+.||+|+||.||+|+..      .+..||||+++... ....+.+.+|++++++++ |||||+++|+|.+.+
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~  114 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG  114 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            3567888899999999999999842      23479999997543 334567899999999996 999999999997653


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------------------------------------------
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------------------------------------------  583 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------------------------------------  583 (766)
                              ..++||||+++|+|.+++++...                                                 
T Consensus       115 --------~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (400)
T cd05105         115 --------PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTT  186 (400)
T ss_pred             --------ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccccccccccc
Confidence                    68999999999999998864310                                                 


Q ss_pred             --------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          584 --------------------------------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       584 --------------------------------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                                                                  ...+++..+..++.|+++||+|||+.   +|+||||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~di  263 (400)
T cd05105         187 QYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDL  263 (400)
T ss_pred             ccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCC
Confidence                                                        12478888899999999999999997   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccC
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARK  688 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~  688 (766)
                      ||+||++++++.+||+|||+++........   .       +..++......++.++|||||||++|||++ |..|+...
T Consensus       264 kp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~  343 (400)
T cd05105         264 AARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             ChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCccc
Confidence            999999999999999999998654221110   0       011111112345678999999999999997 88887632


Q ss_pred             ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          689 GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ... ......+. ......  .+   .    .....+.+++.+||+.||++||+|.+|.++|+...
T Consensus       344 ~~~-~~~~~~~~-~~~~~~--~~---~----~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         344 IVD-STFYNKIK-SGYRMA--KP---D----HATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             chh-HHHHHHHh-cCCCCC--CC---c----cCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence            111 01111111 111100  01   1    11234778999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.7e-34  Score=300.94  Aligned_cols=249  Identities=24%  Similarity=0.431  Sum_probs=192.2

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++..+|++.+.||+|+||.||+|...++..||+|.+..........+..|+.++++++||||+++++++.+.+       
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-------   75 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE-------   75 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCC-------
Confidence            3456788899999999999999998889999999998766656678999999999999999999999987653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.+.. ...+++..+..++.+++.|++|||+.   +++||||||+||++++++.+||+|||+
T Consensus        76 -~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~  150 (261)
T cd05148          76 -PVYIITELMEKGSLLAFLRSPE-GQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGL  150 (261)
T ss_pred             -CeEEEEeecccCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccc
Confidence             6899999999999999997643 34589999999999999999999987   899999999999999999999999999


Q ss_pred             CcccccccccccC--------CCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          640 SIVSEDINSVGGK--------QEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       640 a~~~~~~~~~~~~--------~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +............        .++......++.++|||||||++|||++ |+.|+.....  ...+..+.. ....  ..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~-~~~~--~~  225 (261)
T cd05148         151 ARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN--HEVYDQITA-GYRM--PC  225 (261)
T ss_pred             hhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH--HHHHHHHHh-CCcC--CC
Confidence            8654322111111        1111112345568999999999999998 7888864321  111111111 1011  11


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      +   .    .....+.+++.+||+.||++|||++++.+.|+.
T Consensus       226 ~---~----~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         226 P---A----KCPQEIYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             C---C----CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence            1   1    112346789999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6.1e-34  Score=297.71  Aligned_cols=246  Identities=22%  Similarity=0.427  Sum_probs=186.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|++.    +...||||.++... .....++.+|+.++++++||||+++++++.+.+     
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   78 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR-----   78 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC-----
Confidence            56888999999999999999864    24579999987543 334567899999999999999999999887653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++....  ..+++..+..++.+++.|++|||+.   +|+||||||+||++++++.+|++||
T Consensus        79 ---~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~df  150 (266)
T cd05033          79 ---PVMIITEYMENGSLDKFLREND--GKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDF  150 (266)
T ss_pred             ---ceEEEEEcCCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECcc
Confidence               6899999999999999987643  2588999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc----cc------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          638 GLSIVSEDINS----VG------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       638 Gla~~~~~~~~----~~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |++........    ..      +..++......++.++||||||+++|||++ |..|+.....  ......+.. ....
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~-~~~~  227 (266)
T cd05033         151 GLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSN--QDVIKAVED-GYRL  227 (266)
T ss_pred             chhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCH--HHHHHHHHc-CCCC
Confidence            99876531110    00      011111112345668999999999999998 9888753221  111111111 1000


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .  .+   .    .....+.+++.+||+.+|++||+++||++.|+++
T Consensus       228 ~--~~---~----~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         228 P--PP---M----DCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             C--CC---C----CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            0  01   1    1123467999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.5e-34  Score=305.44  Aligned_cols=260  Identities=19%  Similarity=0.329  Sum_probs=186.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-----CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+|++.+.||+|+||.||+|..+     ++..||+|++........+.+.+|++++++++||||+++++++...+.    
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~----   79 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR----   79 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC----
Confidence            45777899999999999999753     578999999987666667789999999999999999999998865431    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++|+||+++|+|.+++.+..  ..++|..+..++.+++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        80 --~~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~df  152 (284)
T cd05081          80 --RNLRLVMEYLPYGSLRDYLQKHR--ERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDF  152 (284)
T ss_pred             --CceEEEEEecCCCCHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCC
Confidence              35799999999999999987542  2488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc---cc--------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc-ccC-
Q 004232          638 GLSIVSEDINSV---GG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS-QEG-  704 (766)
Q Consensus       638 Gla~~~~~~~~~---~~--------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~-~~~-  704 (766)
                      |++.........   ..        ..++......++.++|||||||++|||++|..++................ ... 
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd05081         153 GLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIV  232 (284)
T ss_pred             cccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccch
Confidence            998754321110   00        00111111234567899999999999999876643211111000000000 000 


Q ss_pred             --ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          705 --RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       705 --~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                        ..+.................+.+++.+||+.+|++||||.||++.|+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         233 YHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence              0000000000000011123478899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=5.2e-34  Score=303.43  Aligned_cols=254  Identities=24%  Similarity=0.433  Sum_probs=188.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc--eEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT--SVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|... ++.  .+|+|.++.. .....+.+.+|+++++++ +||||+++++++.+.+     
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~-----   76 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRG-----   76 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCC-----
Confidence            46888899999999999999864 333  4788888743 334456789999999999 7999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                         ..++|+||+++|+|.+++++...             ...+++.....++.|++.|++|||+.   +|+||||||+||
T Consensus        77 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Ni  150 (297)
T cd05089          77 ---YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNV  150 (297)
T ss_pred             ---cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceE
Confidence               58999999999999999875321             12478899999999999999999987   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccc--cc-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINS--VG-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~--~~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                      ++++++.+||+|||++........  ..     ...++......++.++|||||||++|||+| |..||.....  ....
T Consensus       151 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~--~~~~  228 (297)
T cd05089         151 LVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC--AELY  228 (297)
T ss_pred             EECCCCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHHH
Confidence            999999999999999854321100  00     111111122345678999999999999998 9888864322  1111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                      ..... ......  +   ...    ...+.+++.+||+.+|.+||++++|+++|+.+.+...+
T Consensus       229 ~~~~~-~~~~~~--~---~~~----~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~  281 (297)
T cd05089         229 EKLPQ-GYRMEK--P---RNC----DDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA  281 (297)
T ss_pred             HHHhc-CCCCCC--C---CCC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence            11111 100000  0   111    12367899999999999999999999999988875543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=3.3e-34  Score=303.02  Aligned_cols=243  Identities=17%  Similarity=0.228  Sum_probs=180.1

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |+..+.||+|+||.||+|.. .+|+.||||.+....   ......+.+|++++++++|+||+++++++.+.+        
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~--------   73 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKD--------   73 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCC--------
Confidence            66778999999999999985 579999999986533   222346788999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|..++.... ...+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||++
T Consensus        74 ~~~lv~e~~~~g~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~  149 (285)
T cd05631          74 ALCLVLTIMNGGDLKFHIYNMG-NPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLA  149 (285)
T ss_pred             eEEEEEEecCCCcHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            6899999999999998876432 23488999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........    +   +..++......++.++|||||||++|||++|+.||...... ....+...... ....+    
T Consensus       150 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~----  224 (285)
T cd05631         150 VQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKE-DQEEY----  224 (285)
T ss_pred             EEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhc-ccccC----
Confidence            654321111    1   11111122234567899999999999999999998743221 11111111110 00111    


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS-----FEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~~  749 (766)
                       ....+    ..+.+|+.+||+.||.+||+     ++++++.
T Consensus       225 -~~~~s----~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         225 -SEKFS----EDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             -CccCC----HHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence             11111    23678999999999999997     7777653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=3.4e-34  Score=303.89  Aligned_cols=250  Identities=23%  Similarity=0.381  Sum_probs=189.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|.+.+.||+|+||.||+|+..      ++..||+|.+........+.+.+|++++++++||||+++++++...+    
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   80 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD----   80 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC----
Confidence            35777889999999999999742      35679999987766666678999999999999999999999987653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                          ..++||||+++|+|.+++....+             ...++|..++.++.+++.|++|||++   +|+||||||+|
T Consensus        81 ----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~N  153 (291)
T cd05094          81 ----PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRN  153 (291)
T ss_pred             ----ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcce
Confidence                68999999999999999875431             13478999999999999999999987   89999999999


Q ss_pred             eEEcCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccch
Q 004232          624 ILLNEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFL  692 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~  692 (766)
                      |+++.++.+||+|||++........  ..        ...++......++.++|||||||++|||+| |+.|+...... 
T Consensus       154 il~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-  232 (291)
T cd05094         154 CLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNT-  232 (291)
T ss_pred             EEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-
Confidence            9999999999999999864322110  00        111111112345668999999999999999 99987543221 


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ..+..+. .....+.  +   .    .....+.+++.+||+.+|.+||++++|+++|+++..
T Consensus       233 -~~~~~~~-~~~~~~~--~---~----~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         233 -EVIECIT-QGRVLER--P---R----VCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             -HHHHHHh-CCCCCCC--C---c----cCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence             1111111 1111111  0   0    112347799999999999999999999999999854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=324.07  Aligned_cols=259  Identities=16%  Similarity=0.246  Sum_probs=197.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCC-ceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccc-eeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENG-TSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLG-HCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g-~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g-~~~~~~~~~~~~  558 (766)
                      ..++.+.+.|.+|||+.||.|+...+ ..+|+|++-..++...+.+.+||++|++|+ |||||.+++ ......+..  .
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~--~  113 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNN--G  113 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCC--c
Confidence            34466788999999999999997655 999999998878888999999999999997 999999998 333322211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      .-+++|.||||++|.|-+++.++.... |+..+.++|+.++++|+++||.. .|+|||||||.+||||+.+++.||||||
T Consensus       114 ~~EvllLmEyC~gg~Lvd~mn~Rlq~~-lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFG  191 (738)
T KOG1989|consen  114 VWEVLLLMEYCKGGSLVDFMNTRLQTR-LTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFG  191 (738)
T ss_pred             eeEEEeehhhccCCcHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccc
Confidence            136899999999999999998654433 89999999999999999999985 5689999999999999999999999999


Q ss_pred             CCccccccc-----------------ccccCCCC---CCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          639 LSIVSEDIN-----------------SVGGKQED---PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       639 la~~~~~~~-----------------~~~~~~~~---~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      -+.-.....                 +..++.++   .+.....++|+||||+||+||-|+....||+..+...+     
T Consensus       192 Satt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laI-----  266 (738)
T KOG1989|consen  192 SATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAI-----  266 (738)
T ss_pred             ccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeE-----
Confidence            873211000                 00111111   11224567899999999999999999999985433110     


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                         ......+.+       .......+.+|+..|++.||.+||++-||+..+.+++..+..
T Consensus       267 ---lng~Y~~P~-------~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~~  317 (738)
T KOG1989|consen  267 ---LNGNYSFPP-------FPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPCP  317 (738)
T ss_pred             ---EeccccCCC-------CccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCCC
Confidence               011222222       112334578999999999999999999999999998875543

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=4.3e-34  Score=301.16  Aligned_cols=247  Identities=21%  Similarity=0.327  Sum_probs=182.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|+..+.||+|+||+||+|++. ++.    .||+|.+.... ....+++..|+..+++++||||++++|++...     
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~-----   81 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGA-----   81 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCC-----
Confidence            45777899999999999999863 344    47888875432 23456788888899999999999999987542     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++++||+++|+|.+++....  ..++|.....++.||+.||+|||+.   +++||||||+||++++++.+||+|
T Consensus        82 ----~~~~i~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~D  152 (279)
T cd05111          82 ----SLQLVTQLSPLGSLLDHVRQHR--DSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIAD  152 (279)
T ss_pred             ----ccEEEEEeCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcC
Confidence                4689999999999999997543  3489999999999999999999987   899999999999999999999999


Q ss_pred             CCCCccccccccc--c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV--G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~--~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........  .        ...++......++.++|||||||++||++| |+.|+........   ..+..... 
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~---~~~~~~~~-  228 (279)
T cd05111         153 FGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEV---PDLLEKGE-  228 (279)
T ss_pred             CccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHH---HHHHHCCC-
Confidence            9999654221110  0        001111112345678999999999999998 9988864322111   11111111 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....+..   .    ...+.+++.+||..+|.+||++.|+++.|+.+..
T Consensus       229 -~~~~~~~---~----~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         229 -RLAQPQI---C----TIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             -cCCCCCC---C----CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence             1111111   1    1235678899999999999999999999988753

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.2e-34  Score=298.05  Aligned_cols=246  Identities=23%  Similarity=0.449  Sum_probs=188.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|...+++.||+|.++... ...+++.+|++++++++||||+++++++...+        .
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   75 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE--------P   75 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCC--------C
Confidence            45688889999999999999998778899999987543 23567889999999999999999999887653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.... ...++|..+..++.+++.|++|||+.   +++||||||+||++++++.+||+|||+++
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          76 IYIVTELMKYGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             eeeeeecccCCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            799999999999999987643 34589999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccc---c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSV---G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~---~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ........   +      ...++.......+.++|||||||++|||+| |+.|+.....  ......+....   ....+
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~~---~~~~~  226 (261)
T cd05068         152 VIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN--AEVLQQVDQGY---RMPCP  226 (261)
T ss_pred             EccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCC---CCCCC
Confidence            54322111   0      111111122345668999999999999999 8888864321  11111111110   00001


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                         .    .....+.+++.+|++.+|.+||+|.++.+.|++
T Consensus       227 ---~----~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         227 ---P----GCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             ---C----cCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence               0    112347789999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=4.8e-34  Score=304.59  Aligned_cols=259  Identities=26%  Similarity=0.450  Sum_probs=190.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCc--eEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGT--SVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||.||+|+.. ++.  .+|+|.++.. .....+.+.+|++++.++ +||||+++++++.+.+    
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~----   81 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG----   81 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCC----
Confidence            357888899999999999999864 454  4688877643 234456788999999999 8999999999987653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                          ..++||||+++|+|.+++++...             ...+++..++.++.|++.|++|||+.   +++||||||+|
T Consensus        82 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~N  154 (303)
T cd05088          82 ----YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARN  154 (303)
T ss_pred             ----CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---Cccccccchhe
Confidence                68999999999999999875421             12478999999999999999999987   89999999999


Q ss_pred             eEEcCCCcEEEecCCCCccccccccc--c-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHH
Q 004232          624 ILLNEHRIAKLSDYGLSIVSEDINSV--G-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEE  695 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~~~~~~~--~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~  695 (766)
                      ||+++++.+||+|||++.........  .     ...++.......+.++|||||||++|||+| |..|+.....  .+.
T Consensus       155 ili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~  232 (303)
T cd05088         155 ILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AEL  232 (303)
T ss_pred             EEecCCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh--HHH
Confidence            99999999999999998543211110  0     011111112335678999999999999998 8888853221  111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccccccc
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNE  763 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~~~~~  763 (766)
                      ...+.. .....  .+   ..    ....+.+++.+||+.+|++||++.+++++|+.+...+....+.
T Consensus       233 ~~~~~~-~~~~~--~~---~~----~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~~~~~~  290 (303)
T cd05088         233 YEKLPQ-GYRLE--KP---LN----CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT  290 (303)
T ss_pred             HHHHhc-CCcCC--CC---CC----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhhhhhhh
Confidence            111111 00000  00   01    1123678999999999999999999999999887766554443

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=4.1e-34  Score=298.54  Aligned_cols=246  Identities=23%  Similarity=0.410  Sum_probs=186.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .+|++.+.||+|+||.||+|... .++.||+|.++... ...+++.+|++++++++||||++++++|...+        .
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   76 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--------P   76 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCC--------C
Confidence            34777889999999999999864 58899999987543 34567889999999999999999999987653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.... ...+++..+..++.|+++||+|||+.   +++||||||+||++++++.+||+|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~  152 (263)
T cd05052          77 FYIITEFMTYGNLLDYLRECN-RQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             cEEEEEeCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCcccc
Confidence            799999999999999987543 23588999999999999999999987   89999999999999999999999999986


Q ss_pred             ccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .........         ...++......++.++|||||||++|||+| |..|+....  ..+.+..+.. .....  .+
T Consensus       153 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--~~~~~~~~~~-~~~~~--~~  227 (263)
T cd05052         153 LMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK-GYRME--RP  227 (263)
T ss_pred             ccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHHHHHHHHC-CCCCC--CC
Confidence            543321110         011111122345568999999999999998 888876322  1222222211 10111  11


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                         ...    ...+.+++.+||+.+|++||+|.|++++|+.+
T Consensus       228 ---~~~----~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         228 ---EGC----PPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ---CCC----CHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence               111    13477899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=299.41  Aligned_cols=247  Identities=23%  Similarity=0.361  Sum_probs=186.1

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--------------hhHHHHHHHHHHHHhCCCCCcccc
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--------------YTVRNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------------~~~~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      +..++|++...||+|.||+|-+|+- .+++.||||++.+...              ...+.+.+||.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            4568899999999999999999984 4799999999975421              123578999999999999999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV-LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~-l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                      +.+.-++.      .+.+|||+|||..|.+...    ...++ ++..+...|..++..||+|||.+   +||||||||+|
T Consensus       174 iEvLDDP~------s~~~YlVley~s~G~v~w~----p~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsN  240 (576)
T KOG0585|consen  174 IEVLDDPE------SDKLYLVLEYCSKGEVKWC----PPDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSN  240 (576)
T ss_pred             EEeecCcc------cCceEEEEEeccCCccccC----CCCcccccHHHHHHHHHHHHHHHHHHHhc---Ceeccccchhh
Confidence            99876654      3579999999999988642    22334 88999999999999999999998   89999999999


Q ss_pred             eEEcCCCcEEEecCCCCcccccccc------cccCCCCCCcc-----------cCCCCCCCEeehhHHHHHHhcCCCccc
Q 004232          624 ILLNEHRIAKLSDYGLSIVSEDINS------VGGKQEDPNSW-----------EMTKLEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~DV~SfGvil~ElltG~~p~~  686 (766)
                      +||+++|++||+|||++........      ...+.++|+..           ...+.+.||||+||+||-++.|+.||.
T Consensus       241 LLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~  320 (576)
T KOG0585|consen  241 LLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFF  320 (576)
T ss_pred             eEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcc
Confidence            9999999999999999865421100      00111222211           112335699999999999999999986


Q ss_pred             cCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          687 RKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                        +....+.+.++....    +.-|     ...+....+.+|+++.+++||.+|-+..+|....
T Consensus       321 --~~~~~~l~~KIvn~p----L~fP-----~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hp  373 (576)
T KOG0585|consen  321 --DDFELELFDKIVNDP----LEFP-----ENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHP  373 (576)
T ss_pred             --cchHHHHHHHHhcCc----ccCC-----CcccccHHHHHHHHHHhhcChhheeehhhheecc
Confidence              334444445444322    1111     1112334577899999999999999999887654

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2.2e-34  Score=299.41  Aligned_cols=243  Identities=22%  Similarity=0.373  Sum_probs=183.7

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|.+.+.||+|+||.||+|+..++..||||.+.... ....++.+|+.++++++||||++++|+|.+.+        ..
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~   74 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR--------PI   74 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCC--------Cc
Confidence            3567788999999999999998777789999987543 23467899999999999999999999987653        57


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++.....  .++|..+..++.+|+.|++|||+.   +++||||||+||++++++.+||+|||.++.
T Consensus        75 ~lv~e~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~  149 (256)
T cd05113          75 YIVTEYMSNGCLLNYLREHGK--RFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCcccee
Confidence            999999999999999875432  488999999999999999999987   899999999999999999999999999865


Q ss_pred             ccccccc---c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSV---G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~---~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .......   .      ...++......++.++|||||||++|||+| |+.|+......  .....+.. ....  ..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~~~-~~~~--~~~~  224 (256)
T cd05113         150 VLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNS--ETVEKVSQ-GLRL--YRPH  224 (256)
T ss_pred             cCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHH--HHHHHHhc-CCCC--CCCC
Confidence            4321111   0      011111111345668999999999999999 88887643221  11111111 1111  0111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                         ..    ...+.+++.+||+.+|.+||++.+|++.|+
T Consensus       225 ---~~----~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         225 ---LA----SEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ---CC----CHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence               11    134778999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=4.6e-34  Score=308.57  Aligned_cols=192  Identities=20%  Similarity=0.266  Sum_probs=156.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+++.. +|..||+|.+.... ....+.+.+|++++++++||||+++++++.+.+        
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   76 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--------   76 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC--------
Confidence            67888999999999999999865 68899999987542 334567999999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+..   .+++.....++.+++.||.|||+..  +|+||||||+||+++.++.+||+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  151 (331)
T cd06649          77 EISICMEHMDGGSLDQVLKEAK---RIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (331)
T ss_pred             EEEEEeecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCccc
Confidence            6899999999999999987643   3788889999999999999999852  5999999999999999999999999998


Q ss_pred             ccccccccc------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          641 IVSEDINSV------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       641 ~~~~~~~~~------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .........      .+..++......++.++|||||||++|||+||+.||..
T Consensus       152 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             ccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            654321111      11111111223456789999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=4.9e-34  Score=301.36  Aligned_cols=246  Identities=24%  Similarity=0.389  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|++.+.||+|+||+||+|+.     ..+..||+|.+.... ......+.+|++++++++||||+++++++....    
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----   80 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ----   80 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC----
Confidence            4577889999999999999984     356789999997533 344577899999999999999999999987653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC--------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP--------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN  622 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~  622 (766)
                          ..++||||+++|+|.+++.....              ...+++...+.++.+++.||+|||+.   +++||||||+
T Consensus        81 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~  153 (283)
T cd05090          81 ----PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAAR  153 (283)
T ss_pred             ----ceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---Ceehhccccc
Confidence                67999999999999998853321              12478888999999999999999997   8999999999


Q ss_pred             ceEEcCCCcEEEecCCCCccccccccc----------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccc
Q 004232          623 NILLNEHRIAKLSDYGLSIVSEDINSV----------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQF  691 (766)
Q Consensus       623 NILld~~~~~kl~DFGla~~~~~~~~~----------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~  691 (766)
                      ||++++++.+|++|||+++........          .+..++......++.++|||||||++|||++ |..|+......
T Consensus       154 nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~  233 (283)
T cd05090         154 NILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQ  233 (283)
T ss_pred             eEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH
Confidence            999999999999999998654221100          0111111112345668999999999999999 88887532221


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                        . +...........     .....    ...+.+++.+||+.||++||++.+|.++|.
T Consensus       234 --~-~~~~~~~~~~~~-----~~~~~----~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  281 (283)
T cd05090         234 --E-VIEMVRKRQLLP-----CSEDC----PPRMYSLMTECWQEGPSRRPRFKDIHTRLR  281 (283)
T ss_pred             --H-HHHHHHcCCcCC-----CCCCC----CHHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence              1 111111111111     00111    134678899999999999999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=7.7e-34  Score=297.83  Aligned_cols=251  Identities=20%  Similarity=0.371  Sum_probs=181.9

Q ss_pred             CcCCceecCCceeEEEEEecC-Cc--eEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRLEN-GT--SVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~-g~--~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.+.||+|+||.||+|+... +.  .||+|.++..  .....+.+.+|++++++++||||++++|+|.......  ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--~~~   79 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESE--GYP   79 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCccc--CCC
Confidence            456889999999999998754 32  5899988653  3444678899999999999999999999986543111  113


Q ss_pred             eEEEEEEccCCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISENT---PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      ..+++|||+++|+|.+++....   ....+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df  156 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADF  156 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCC
Confidence            5799999999999998874321   123478999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc--cccC---C-----CCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          638 GLSIVSEDINS--VGGK---Q-----EDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       638 Gla~~~~~~~~--~~~~---~-----~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |+++.......  ....   .     ++......++.++|||||||++|||++ |+.|+.....  ......+.. ....
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~-~~~~  233 (272)
T cd05075         157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN--SEIYDYLRQ-GNRL  233 (272)
T ss_pred             CcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHc-CCCC
Confidence            99875432111  0000   0     000111234567999999999999999 7888753221  122222211 1111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .  .+   ..    ....+.+++.+||+.||++|||+.+|++.|+++
T Consensus       234 ~--~~---~~----~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         234 K--QP---PD----CLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             C--CC---CC----CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            1  11   11    122367899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-34  Score=309.00  Aligned_cols=248  Identities=24%  Similarity=0.317  Sum_probs=184.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. +++.||||+++...   ....+.+.+|++++++++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~------   74 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDE------   74 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCC------
Confidence            36888999999999999999965 58999999987542   233567888999999999999999999987753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        75 --~~~lv~e~~~g~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg  146 (333)
T cd05600          75 --YLYLAMEYVPGGDFRTLLNNLG---VLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFG  146 (333)
T ss_pred             --EEEEEEeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCc
Confidence              7899999999999999997543   478888999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc--c---ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDINS--V---GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~~--~---~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ++........  .   .+..++......++.++|||||||++|||++|+.||.....  .+.+..+....  ..+..|..
T Consensus       147 ~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~~--~~~~~~~~  222 (333)
T cd05600         147 LSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP--NETWENLKYWK--ETLQRPVY  222 (333)
T ss_pred             CCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH--HHHHHHHHhcc--ccccCCCC
Confidence            9865433111  1   11112212223456789999999999999999999864322  11111111100  00111111


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .. ........+.+++.+|+..+|.+||+++|+++.
T Consensus       223 ~~-~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         223 DD-PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             Cc-cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            00 000112346788999999999999999999865

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=282.73  Aligned_cols=194  Identities=20%  Similarity=0.322  Sum_probs=162.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|+..+.||.|+||.|..++.+ +|...|+|.++..+.   ...+....|..+|+.+.||++|++.+-|.+.+     
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~-----  117 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNS-----  117 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCC-----
Confidence            356788899999999999999854 688999999987643   34566788999999999999999999988864     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .++|||||+++|.|..++++.++   ++......+|.+|+.|++|||+.   .|++|||||+|||||.+|++||+||
T Consensus       118 ---~lymvmeyv~GGElFS~Lrk~~r---F~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDF  188 (355)
T KOG0616|consen  118 ---NLYMVMEYVPGGELFSYLRKSGR---FSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDF  188 (355)
T ss_pred             ---eEEEEEeccCCccHHHHHHhcCC---CCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEec
Confidence               79999999999999999987543   78888889999999999999998   8999999999999999999999999


Q ss_pred             CCCcccccccc-cccCCCC----CCcccCCCCCCCEeehhHHHHHHhcCCCccccCc
Q 004232          638 GLSIVSEDINS-VGGKQED----PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKG  689 (766)
Q Consensus       638 Gla~~~~~~~~-~~~~~~~----~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~  689 (766)
                      |+|+....... ..+++++    ......+...+|+|||||++|||+.|.+||....
T Consensus       189 GFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~  245 (355)
T KOG0616|consen  189 GFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN  245 (355)
T ss_pred             cceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC
Confidence            99987655432 2233322    1223455667899999999999999999987544

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-33  Score=296.85  Aligned_cols=252  Identities=19%  Similarity=0.352  Sum_probs=184.8

Q ss_pred             CCcCCceecCCceeEEEEEecC----CceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |++.+.||+|+||.||+|....    +..||||.++...  ......+.+|++.+++++||||++++|++.+....  ..
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~--~~   78 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSL--QK   78 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcc--cc
Confidence            4667899999999999998642    4679999987542  33456789999999999999999999998765321  01


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT---PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                      ....++++||+++|+|..++....   ....+++.....++.|++.||+|||+.   +++||||||+||++++++.+||+
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~  155 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVA  155 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEEC
Confidence            134799999999999999885432   223588999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccc--cc--------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          636 DYGLSIVSEDINSV--GG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       636 DFGla~~~~~~~~~--~~--------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      |||+++........  ..        ..++.......+.++|||||||++|||++ |..|+.....  .+....+.. ..
T Consensus       156 dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--~~~~~~~~~-~~  232 (273)
T cd05035         156 DFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--HEIYDYLRH-GN  232 (273)
T ss_pred             CccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-CC
Confidence            99998654321110  00        01111112345668999999999999999 8888753221  121222211 11


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .....     .    .....+.+++.+||+.||++||++.||++.|++.
T Consensus       233 ~~~~~-----~----~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         233 RLKQP-----E----DCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CCCCC-----c----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            11111     1    1223478899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=7.6e-34  Score=301.45  Aligned_cols=251  Identities=21%  Similarity=0.400  Sum_probs=187.6

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ..++|++.+.||+|+||.||+|...      ....+|+|.+.... .....++.+|+++++++ +||||++++++|.+.+
T Consensus        10 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          10 PRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             CHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            3456888899999999999999853      23679999987542 33456788999999999 8999999999987653


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENT-------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                              ..+++|||+++|+|..+++...             ....+++..++.++.|++.|++|||+.   +|+||||
T Consensus        90 --------~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dl  158 (293)
T cd05053          90 --------PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDL  158 (293)
T ss_pred             --------CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ccccccc
Confidence                    6899999999999999986531             234588999999999999999999986   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCccccccccc--c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccC
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINSV--G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARK  688 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~~--~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~  688 (766)
                      ||+||++++++.+|++|||+++........  .        +..++.......+.++|||||||++||+++ |..|+...
T Consensus       159 kp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         159 AARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             ceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence            999999999999999999998754322110  0        011111112345668999999999999998 88887633


Q ss_pred             ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          689 GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ..  ......+.. ......  +       ......+.+++.+||..+|.+|||+.||++.|+.+.
T Consensus       239 ~~--~~~~~~~~~-~~~~~~--~-------~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         239 PV--EELFKLLKE-GYRMEK--P-------QNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             CH--HHHHHHHHc-CCcCCC--C-------CCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            21  111111111 100000  0       111234778999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-34  Score=292.73  Aligned_cols=261  Identities=18%  Similarity=0.288  Sum_probs=186.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHh--CCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAK--LRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~--l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+..+.+.||+|.||.||+|+|+ |+.||||++...+   .+.+.+|.+|...  +||+||..+++.-..+.    -..
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd---E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~----gs~  281 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD---ERSWFRETEIYQTVMLRHENILGFIAADNKDN----GSW  281 (513)
T ss_pred             hheeEEEEEecCccccceeecccc-CCceEEEEecccc---hhhhhhHHHHHHHHHhccchhhhhhhccccCC----Cce
Confidence            356778899999999999999997 8899999997543   3567788887775  49999999998754432    234


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCcccCCCCCCceEEcCCCcEEE
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG-----VIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                      .++|||+||.++|+|++||.+.    .++-...++++..+|.||+|||..     ..|.|.|||||+.|||+..++.+.|
T Consensus       282 TQLwLvTdYHe~GSL~DyL~r~----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~I  357 (513)
T KOG2052|consen  282 TQLWLVTDYHEHGSLYDYLNRN----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  357 (513)
T ss_pred             EEEEEeeecccCCcHHHHHhhc----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEE
Confidence            6899999999999999999863    488899999999999999999963     4589999999999999999999999


Q ss_pred             ecCCCCccccccc---------ccccCCCCCCcccC--------CC-CCCCEeehhHHHHHHhcC----------CCccc
Q 004232          635 SDYGLSIVSEDIN---------SVGGKQEDPNSWEM--------TK-LEDDVFSFGFMLLESVAG----------PSVAA  686 (766)
Q Consensus       635 ~DFGla~~~~~~~---------~~~~~~~~~~~~~~--------~~-~~~DV~SfGvil~ElltG----------~~p~~  686 (766)
                      +|+|||.......         ..+++...++..--        .+ ..+||||||.|+||++..          +.||.
T Consensus       358 ADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyy  437 (513)
T KOG2052|consen  358 ADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYY  437 (513)
T ss_pred             eeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcc
Confidence            9999995432221         11221111100000        00 136999999999998842          23332


Q ss_pred             cC--ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          687 RK--GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       687 ~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      .-  .+-..++...+.-.......++..   -.+.+++..+.++++.||..+|..|-|+--|-+.|.++.+.+
T Consensus       438 d~Vp~DPs~eeMrkVVCv~~~RP~ipnr---W~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~~  507 (513)
T KOG2052|consen  438 DVVPSDPSFEEMRKVVCVQKLRPNIPNR---WKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNSD  507 (513)
T ss_pred             cCCCCCCCHHHHhcceeecccCCCCCcc---cccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcCh
Confidence            10  011112222222111111111111   123467888999999999999999999999999999887543

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=4e-34  Score=311.95  Aligned_cols=238  Identities=19%  Similarity=0.282  Sum_probs=174.4

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +|+..+.||+|+||.||+|+.. +|+.||||.+.... ....+.+.+|++++++++|+||+++++++.+.+        .
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------~  146 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNG--------E  146 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCC--------e
Confidence            4556688999999999999854 68999999986543 334567899999999999999999999987653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|....       ...+.....++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++
T Consensus       147 ~~lv~e~~~~~~L~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        147 IQVLLEFMDGGSLEGTH-------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             EEEEEecCCCCcccccc-------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            89999999999986532       245667788999999999999997   89999999999999999999999999986


Q ss_pred             ccccccc-----cccCC-CCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCcc-chHHHHhhhhcccCccc
Q 004232          642 VSEDINS-----VGGKQ-EDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-FLQEELDSLNSQEGRQR  707 (766)
Q Consensus       642 ~~~~~~~-----~~~~~-~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-~~~~~~~~~~~~~~~~~  707 (766)
                      .......     .+... ..|...       ...+.++|||||||++|||++|+.||..... ........+.... .  
T Consensus       217 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~-~--  293 (353)
T PLN00034        217 ILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ-P--  293 (353)
T ss_pred             ecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccC-C--
Confidence            5432211     11100 011111       1223578999999999999999999863221 1111111111000 0  


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         +.....    ....+.+++.+||+.||++||++.||++.
T Consensus       294 ---~~~~~~----~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        294 ---PEAPAT----ASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ---CCCCCc----cCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               000011    12347789999999999999999999875

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-34  Score=305.26  Aligned_cols=240  Identities=15%  Similarity=0.234  Sum_probs=181.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|++....   ....+.+.+|++++++++||||+++++++.+..      
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------   74 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQR------   74 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCC------
Confidence            36888899999999999999864 68999999986432   233566889999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||
T Consensus        75 --~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg  146 (291)
T cd05612          75 --FLYMLMEYVPGGELFSYLRNSG---RFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFG  146 (291)
T ss_pred             --eEEEEEeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecC
Confidence              7899999999999999987643   478888999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc--cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDINSV--GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~~~--~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      +++........  +.   ..++.......+.++|||||||++|||+||+.|+.....  ......+...  ..++  +  
T Consensus       147 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~--~~~~~~i~~~--~~~~--~--  218 (291)
T cd05612         147 FAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP--FGIYEKILAG--KLEF--P--  218 (291)
T ss_pred             cchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC--CcCC--C--
Confidence            98654332111  11   111111223356789999999999999999999864322  1111221111  0111  1  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPS-----FEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~~  749 (766)
                       ...    -..+.+++.+|++.||.+||+     +.|+++.
T Consensus       219 -~~~----~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         219 -RHL----DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             -ccC----CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence             111    123678999999999999995     7777654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.1e-33  Score=295.68  Aligned_cols=251  Identities=17%  Similarity=0.272  Sum_probs=188.2

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+. .+++.||||.++..   .....+.+.+|++++++++||||+++++++.+.+      
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   75 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDN------   75 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECC------
Confidence            5788899999999999999985 47899999987542   2344567889999999999999999999988653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ..++|+||+++|+|.+++..... ...++......++.+++.||+|||+.   +++||||||+||+++.++.+||+||
T Consensus        76 --~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~  150 (267)
T cd08228          76 --ELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             --eEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECcc
Confidence              68999999999999988854321 23478888899999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++.........     +   ...++.......+.++|||||||++|||+||+.|+.............+.. ..     
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~-~~-----  224 (267)
T cd08228         151 GLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQ-CD-----  224 (267)
T ss_pred             ccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhc-CC-----
Confidence            998654322110     0   011111111234567899999999999999999986433222222222111 00     


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .+..   ........+.+++.+||+.+|++||++.+|++.++.+
T Consensus       225 ~~~~---~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         225 YPPL---PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             CCCC---ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence            1111   1111224478899999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=7.4e-34  Score=294.51  Aligned_cols=238  Identities=24%  Similarity=0.414  Sum_probs=178.5

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      +.||+|+||.||+|+. .+++.||+|.+.... ......+.+|++++++++||||++++++|.+..        ..++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~~lv~   72 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ--------PIYIVM   72 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC--------CeEEEE
Confidence            3689999999999986 478999999876432 334567899999999999999999999987653        679999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++....  ..+++.....++.|++.||+|||+.   +++||||||+||+++.++.+|++|||++......
T Consensus        73 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  147 (252)
T cd05084          73 ELVQGGDFLTFLRTEG--PRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG  147 (252)
T ss_pred             eeccCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccc
Confidence            9999999999987543  3478999999999999999999987   8999999999999999999999999998653321


Q ss_pred             cccc----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          647 NSVG----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       647 ~~~~----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ....          +..++.......+.++|||||||++|||++ |..|+......  .....+. .......  +   .
T Consensus       148 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~--~~~~~~~-~~~~~~~--~---~  219 (252)
T cd05084         148 VYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ--QTREAIE-QGVRLPC--P---E  219 (252)
T ss_pred             cccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHH--HHHHHHH-cCCCCCC--c---c
Confidence            1100          011111112334567899999999999998 88887532211  1111111 1100010  1   1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                          .....+.+++.+|++.+|++||++.||.++|+
T Consensus       220 ----~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         220 ----LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             ----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                11234778999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=6.8e-34  Score=300.13  Aligned_cols=247  Identities=26%  Similarity=0.447  Sum_probs=185.0

Q ss_pred             cCCCcCCceecCCceeEEEEEecC------CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|++.+.||+|+||.||+|....      ...||+|.++... ....+++.+|+.++++++||||+++++++.+.+   
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~---   81 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ---   81 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC---
Confidence            467888999999999999998532      2579999987543 334567899999999999999999999987653   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCC-------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPG-------------KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN  622 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~  622 (766)
                           ..+++|||+++|+|.+++......             ..+++.....++.+++.||+|||+.   +++||||||+
T Consensus        82 -----~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~  153 (283)
T cd05048          82 -----PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAAR  153 (283)
T ss_pred             -----ceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccccc
Confidence                 679999999999999998754221             3478889999999999999999997   8999999999


Q ss_pred             ceEEcCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccc
Q 004232          623 NILLNEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQF  691 (766)
Q Consensus       623 NILld~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~  691 (766)
                      ||++++++.+||+|||+++.......  ..        +.+++.......+.++|||||||++|||+| |..|+..... 
T Consensus       154 Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~-  232 (283)
T cd05048         154 NCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN-  232 (283)
T ss_pred             eEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH-
Confidence            99999999999999999865322110  00        111111112345668999999999999998 9888763221 


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                       .+....+. .......         +......+.+|+.+||+.||.+||+++||++.|+.
T Consensus       233 -~~~~~~i~-~~~~~~~---------~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         233 -QEVIEMIR-SRQLLPC---------PEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             -HHHHHHHH-cCCcCCC---------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence             11111111 1111111         11122447889999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=7.8e-34  Score=299.26  Aligned_cols=252  Identities=21%  Similarity=0.348  Sum_probs=190.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC-----CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN-----GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      .++|.+.++||+|+||.||+|....     +..||+|.+... .....+.+.+|+.++++++||||++++|++.+.+   
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~---   81 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG---   81 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC---
Confidence            4568888999999999999999755     788999988754 3344677889999999999999999999987643   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCC-----CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPG-----KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-----~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                          ...++++||+++|+|..++......     ..+++..+..++.+++.||+|||+.   +++||||||+||++++++
T Consensus        82 ----~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~  154 (280)
T cd05043          82 ----EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEEL  154 (280)
T ss_pred             ----CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCC
Confidence                2579999999999999998754322     4588999999999999999999987   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc----------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhh
Q 004232          631 IAKLSDYGLSIVSEDINSV----------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~----------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~  699 (766)
                      .+||+|||+++........          ....++......++.++|||||||++||+++ |+.|+.....  ......+
T Consensus       155 ~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~  232 (280)
T cd05043         155 QVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP--FEMAAYL  232 (280)
T ss_pred             cEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH--HHHHHHH
Confidence            9999999999653221100          0111111112345678999999999999999 9999864322  1111111


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .. +  .....+   ...    ...+.+++.+||+.||++||++.||++.|+.+.+
T Consensus       233 ~~-~--~~~~~~---~~~----~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         233 KD-G--YRLAQP---INC----PDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             Hc-C--CCCCCC---CcC----CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            11 1  111111   111    1246789999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=9.4e-34  Score=306.29  Aligned_cols=192  Identities=21%  Similarity=0.292  Sum_probs=156.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+++.. ++..+|+|.+... .....+.+.+|++++++++||||++++++|.+.+        
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   76 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--------   76 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECC--------
Confidence            67889999999999999999865 6889999988754 3334567899999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+..  +|+||||||+||++++++.+||+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~  151 (333)
T cd06650          77 EISICMEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVS  151 (333)
T ss_pred             EEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcc
Confidence            7899999999999999997543   3788888999999999999999742  6999999999999999999999999998


Q ss_pred             ccccccccc---c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          641 IVSEDINSV---G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       641 ~~~~~~~~~---~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .........   +   ...++......++.++|||||||++|||++|+.|+..
T Consensus       152 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             hhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            644221110   1   1111111123456689999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=6e-34  Score=306.59  Aligned_cols=233  Identities=19%  Similarity=0.244  Sum_probs=175.2

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ++||+|+||.||+++. .+|+.||||+++...   ......+.+|+.++++++||||+++++++...+        ..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--------~~~l   72 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHD--------RLCF   72 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCC--------EEEE
Confidence            3689999999999985 478999999987532   233456788999999999999999999887653        7899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      ||||+++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        73 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~  146 (323)
T cd05571          73 VMEYANGGELFFHLSRER---VFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  146 (323)
T ss_pred             EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccc
Confidence            999999999999887543   478999999999999999999997   89999999999999999999999999986432


Q ss_pred             ccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          645 DINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       645 ~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      .....     +   +..++......++.++|||||||++|||+||+.||......  .....+....  ..+  |   ..
T Consensus       147 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~--~~~~~~~~~~--~~~--p---~~  217 (323)
T cd05571         147 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILMEE--IRF--P---RT  217 (323)
T ss_pred             cCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHH--HHHHHHHcCC--CCC--C---CC
Confidence            11110     1   11111112234567899999999999999999998643221  1111111110  111  1   11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                      .    ...+.+++.+|++.||++||     +..|+++
T Consensus       218 ~----~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         218 L----SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             C----CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            1    12367889999999999999     7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.5e-34  Score=308.31  Aligned_cols=241  Identities=19%  Similarity=0.317  Sum_probs=181.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||+++...   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----   91 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDEN-----   91 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCC-----
Confidence            356888999999999999999864 68999999986542   233567889999999999999999999988753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus        92 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Df  162 (329)
T PTZ00263         92 ---RVYFLLEFVVGGELFTHLRKAG---RFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDF  162 (329)
T ss_pred             ---EEEEEEcCCCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeec
Confidence               7899999999999999987643   377888888999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          638 GLSIVSEDINSV-GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       638 Gla~~~~~~~~~-~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+++........ .++    .++.......+.++|||||||++|||+||+.||.....  ......+.. . ...+  |.
T Consensus       163 g~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~~~i~~-~-~~~~--p~  236 (329)
T PTZ00263        163 GFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP--FRIYEKILA-G-RLKF--PN  236 (329)
T ss_pred             cCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH--HHHHHHHhc-C-CcCC--CC
Confidence            998754332111 111    11111223456789999999999999999999864322  111122211 1 1111  11


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS-----FEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~~  749 (766)
                         ..+    ..+.+++.+||+.||.+||+     +++++..
T Consensus       237 ---~~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        237 ---WFD----GRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             ---CCC----HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence               111    23678999999999999997     5666533

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=303.60  Aligned_cols=239  Identities=23%  Similarity=0.386  Sum_probs=186.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|.+.++||+|+||.||||+. .+.+.||+|.+.+..+  .+.+.+.+|++++++++|||||.+++.|....       
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~-------   74 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSA-------   74 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccc-------
Confidence            5688889999999999999985 4789999999976543  44678999999999999999999999988763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ++|+|+||+.+ +|+.+|...+   .+.......++.++..||.|||+.   +|+|||+||.|||++..+++|+||||+
T Consensus        75 -~~~vVte~a~g-~L~~il~~d~---~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~  146 (808)
T KOG0597|consen   75 -HLWVVTEYAVG-DLFTILEQDG---KLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGL  146 (808)
T ss_pred             -eEEEEehhhhh-hHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhh
Confidence             79999999998 9999997653   488999999999999999999998   899999999999999999999999999


Q ss_pred             Cccccccccc----ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSV----GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~----~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      |+........    .+++    ++......+...+|.||+|||+||+.+|++||....  ....+..+..+        |
T Consensus       147 Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s--i~~Lv~~I~~d--------~  216 (808)
T KOG0597|consen  147 ARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS--ITQLVKSILKD--------P  216 (808)
T ss_pred             hhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH--HHHHHHHHhcC--------C
Confidence            9865443221    1111    111223456678999999999999999999986322  22222223221        1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...+   ......+..+...-+.+||.+|-+-.+++..
T Consensus       217 v~~p---~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  217 VKPP---STASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             CCCc---ccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence            1111   1223346778888899999999998887643

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=8.5e-34  Score=308.01  Aligned_cols=253  Identities=24%  Similarity=0.373  Sum_probs=186.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      ++|++.+.||+|+||+||+|+.      .+++.||||.++... ....+.+.+|+.++.++ +||||++++++|...+  
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~--   84 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG--   84 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC--
Confidence            5688899999999999999973      357889999997543 33456788999999999 6899999999987654  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC---------------------------------------------------
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------------------------------------  583 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------------------------------------  583 (766)
                           ...++||||+++|+|.++++....                                                   
T Consensus        85 -----~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (343)
T cd05103          85 -----GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLS  159 (343)
T ss_pred             -----CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccc
Confidence                 357999999999999998864210                                                   


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccccc--
Q 004232          584 -------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS--  648 (766)
Q Consensus       584 -------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~--  648 (766)
                                   ...++|.....++.++++||+|||+.   +|+||||||+||++++++++||+|||++........  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  236 (343)
T cd05103         160 DVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYV  236 (343)
T ss_pred             cchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchh
Confidence                         12367888899999999999999997   899999999999999999999999999865322111  


Q ss_pred             -cc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCCCCH
Q 004232          649 -VG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL  719 (766)
Q Consensus       649 -~~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  719 (766)
                       ..       +..++......++.++|||||||++|||++ |..|+......  ..............  .|..   .+ 
T Consensus       237 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~~~~~~--~~~~---~~-  308 (343)
T cd05103         237 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID--EEFCRRLKEGTRMR--APDY---TT-  308 (343)
T ss_pred             hcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcccc--HHHHHHHhccCCCC--CCCC---CC-
Confidence             00       001111112345668999999999999997 88887642211  11111111111111  1111   11 


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          720 ESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       720 ~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                         ..+.+++.+||+.||++||++.||++.|+.+.+.
T Consensus       309 ---~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~~  342 (343)
T cd05103         309 ---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  342 (343)
T ss_pred             ---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence               2367889999999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=5.5e-34  Score=299.99  Aligned_cols=248  Identities=19%  Similarity=0.314  Sum_probs=183.5

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      .+++|++.+.||+|+||.||+|...      ++..||||.+.... .....++.+|+.++++++||||+++++++.+.. 
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~-   82 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ-   82 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-
Confidence            4567999999999999999998742      35679999986432 334567889999999999999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP-------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                             ..++||||+++|+|.+++++...       ...++|..+..++.+++.||+|||+.   +++||||||+||++
T Consensus        83 -------~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~  152 (277)
T cd05062          83 -------PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMV  152 (277)
T ss_pred             -------CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEE
Confidence                   68999999999999999865321       12367888999999999999999986   89999999999999


Q ss_pred             cCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHH
Q 004232          627 NEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEE  695 (766)
Q Consensus       627 d~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~  695 (766)
                      ++++.+|++|||+++.......  ..        +..++.......+.++|||||||++|||++ |..|+.....  ...
T Consensus       153 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~--~~~  230 (277)
T cd05062         153 AEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN--EQV  230 (277)
T ss_pred             cCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHH
Confidence            9999999999999864322111  00        111111112345668999999999999999 6777753221  111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      ...+. ........     .    .....+.+++.+||+.+|++||++.|++++|+
T Consensus       231 ~~~~~-~~~~~~~~-----~----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         231 LRFVM-EGGLLDKP-----D----NCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             HHHHH-cCCcCCCC-----C----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            11111 11111110     1    11234778999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=301.94  Aligned_cols=238  Identities=21%  Similarity=0.339  Sum_probs=179.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|++..+||+|+||.||.|+. .+|..+|+|++++..   ....+.++.|-.+|...++|.||+|+-.|.+.+    
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~----  214 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE----  214 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC----
Confidence            567899999999999999999985 579999999998764   345677889999999999999999998888764    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          .+||||||+||||+..+|.+..   .|+......++.+++.|+.-+|+.   ++|||||||+|+|||..|++|++|
T Consensus       215 ----~LYLiMEylPGGD~mTLL~~~~---~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSD  284 (550)
T KOG0605|consen  215 ----YLYLIMEYLPGGDMMTLLMRKD---TLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSD  284 (550)
T ss_pred             ----eeEEEEEecCCccHHHHHHhcC---cCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeecc
Confidence                7999999999999999998654   488888888999999999999998   999999999999999999999999


Q ss_pred             CCCCccccccc---------------ccccC---------------------------------CCCCCc-------ccC
Q 004232          637 YGLSIVSEDIN---------------SVGGK---------------------------------QEDPNS-------WEM  661 (766)
Q Consensus       637 FGla~~~~~~~---------------~~~~~---------------------------------~~~~~~-------~~~  661 (766)
                      |||+.......               .....                                 .+.|.+       ...
T Consensus       285 FGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kg  364 (550)
T KOG0605|consen  285 FGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKG  364 (550)
T ss_pred             ccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCC
Confidence            99984321100               00000                                 011111       122


Q ss_pred             CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          662 TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       662 ~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                      ++..+|+||+|||||||+.|-+||.....  .+.+..+..-.  .-+..|.-..     .-.++.+|+.+|+. ||.+|-
T Consensus       365 Y~~~cDwWSLG~ImyEmLvGyPPF~s~tp--~~T~rkI~nwr--~~l~fP~~~~-----~s~eA~DLI~rll~-d~~~RL  434 (550)
T KOG0605|consen  365 YGKECDWWSLGCIMYEMLVGYPPFCSETP--QETYRKIVNWR--ETLKFPEEVD-----LSDEAKDLITRLLC-DPENRL  434 (550)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHh--hhccCCCcCc-----ccHHHHHHHHHHhc-CHHHhc
Confidence            34568999999999999999999974432  23333332211  1111111101     11347789999999 999996


Q ss_pred             C
Q 004232          742 S  742 (766)
Q Consensus       742 s  742 (766)
                      -
T Consensus       435 G  435 (550)
T KOG0605|consen  435 G  435 (550)
T ss_pred             C
Confidence            4

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=9e-34  Score=298.66  Aligned_cols=246  Identities=24%  Similarity=0.403  Sum_probs=185.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|.+.+.||+|+||.||+|+..      ++..||||.++..... ..+.+.+|++++++++||||+++++++....   
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~---   81 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGD---   81 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCC---
Confidence            45777899999999999999853      3578999998765433 4678999999999999999999999988753   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCC-----------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTP-----------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-----------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                           ..++||||+++|+|.+++.....           ...+++.....++.+++.|++|||+.   +++||||||+||
T Consensus        82 -----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~ni  153 (280)
T cd05049          82 -----PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNC  153 (280)
T ss_pred             -----CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceE
Confidence                 68999999999999999975421           23478889999999999999999987   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQ  693 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~  693 (766)
                      +++.++.+||+|||++........  ..        ...++......++.++|||||||++|||++ |+.|+.....  .
T Consensus       154 li~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~--~  231 (280)
T cd05049         154 LVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN--E  231 (280)
T ss_pred             EEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH--H
Confidence            999999999999999864321110  00        111111122445668999999999999999 9999754322  1


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .....+. .......  +   ..    ....+.+++.+||+.||++||++.||++.|+
T Consensus       232 ~~~~~~~-~~~~~~~--~---~~----~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         232 EVIECIT-QGRLLQR--P---RT----CPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             HHHHHHH-cCCcCCC--C---CC----CCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            1111111 1111110  0   11    1134778999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1e-33  Score=298.28  Aligned_cols=252  Identities=21%  Similarity=0.313  Sum_probs=187.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCc----eEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGT----SVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~----~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|+..+.||+|+||+||+|++ .+|.    .||+|.++.. .....+++.+|+.+++.++||||++++|+|...     
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----   81 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-----   81 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-----
Confidence            5678889999999999999985 3444    4899998653 334467788999999999999999999998753     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++++||+++|+|.+++++..  ..+++...+.++.|++.||+|||+.   +|+||||||+||++++++.+||+|
T Consensus        82 ----~~~l~~~~~~~g~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~d  152 (279)
T cd05109          82 ----TVQLVTQLMPYGCLLDYVRENK--DRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITD  152 (279)
T ss_pred             ----CcEEEEEcCCCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECC
Confidence                4689999999999999987643  2488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc----c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV----G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~----~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........    .      ...++......++.++|||||||++|||+| |..|+........   .........
T Consensus       153 fG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~---~~~~~~~~~  229 (279)
T cd05109         153 FGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREI---PDLLEKGER  229 (279)
T ss_pred             CCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHH---HHHHHCCCc
Confidence            9998754321110    0      001111112335567899999999999998 8888753322111   111111111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcccc
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETA  760 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~~  760 (766)
                      ...  +   ..    ....+.+++.+||+.||++||++.+++..|+++.+.....
T Consensus       230 ~~~--~---~~----~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~~~~  275 (279)
T cd05109         230 LPQ--P---PI----CTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDPSRF  275 (279)
T ss_pred             CCC--C---cc----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCCcCe
Confidence            110  0   11    1234678999999999999999999999999887655443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=2.6e-34  Score=316.48  Aligned_cols=252  Identities=21%  Similarity=0.371  Sum_probs=185.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCC-CCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~  552 (766)
                      ..++|.+.+.||+|+||.||+|++.      .+..||||+++... ....+.+.+|+++|.++. |||||+++|+|.+.+
T Consensus        35 ~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~  114 (401)
T cd05107          35 PRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGG  114 (401)
T ss_pred             cHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCC
Confidence            3456777899999999999999853      34689999997543 233457889999999997 999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------------------------------------------
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------------------------------------------  583 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------------------------------------  583 (766)
                              ..++||||+++|+|.+++++...                                                 
T Consensus       115 --------~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (401)
T cd05107         115 --------PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDES  186 (401)
T ss_pred             --------CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccc
Confidence                    68999999999999999865321                                                 


Q ss_pred             ----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccC
Q 004232          584 ----------------------------------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN  617 (766)
Q Consensus       584 ----------------------------------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  617 (766)
                                                                    ...++|.....++.+++.||+|||+.   +++||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  263 (401)
T cd05107         187 ADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHR  263 (401)
T ss_pred             cCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcc
Confidence                                                          12367888899999999999999986   89999


Q ss_pred             CCCCCceEEcCCCcEEEecCCCCcccccccc---ccc-------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccc
Q 004232          618 RVKTNNILLNEHRIAKLSDYGLSIVSEDINS---VGG-------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAA  686 (766)
Q Consensus       618 dlk~~NILld~~~~~kl~DFGla~~~~~~~~---~~~-------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~  686 (766)
                      ||||+|||+++++.+|++|||+++.......   ...       ..++.......+.++|||||||++|||++ |..|+.
T Consensus       264 dlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~  343 (401)
T cd05107         264 DLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYP  343 (401)
T ss_pred             cCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999865322110   000       00111111334567899999999999998 888875


Q ss_pred             cCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          687 RKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .....  +........+.  ....|.   ..    ...+.+++.+||+.+|.+||+|+||++.|+.+.
T Consensus       344 ~~~~~--~~~~~~~~~~~--~~~~p~---~~----~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         344 ELPMN--EQFYNAIKRGY--RMAKPA---HA----SDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             CCCch--HHHHHHHHcCC--CCCCCC---CC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            32211  11111111111  111111   11    134778999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.3e-33  Score=293.73  Aligned_cols=236  Identities=21%  Similarity=0.345  Sum_probs=177.6

Q ss_pred             ceecCCceeEEEEEe---cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          490 IMGEGSYGKLYKGRL---ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      .||+|+||.||+|.+   .++..+|+|+++...  ....+++.+|+.++++++||||++++|++...         ..++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---------~~~l   72 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAE---------SWML   72 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC---------CcEE
Confidence            589999999999975   357889999986443  33467889999999999999999999988542         4689


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      ||||+++|+|.+++.+..   .+++.....++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++....
T Consensus        73 v~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~  146 (257)
T cd05116          73 VMELAELGPLNKFLQKNK---HVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALG  146 (257)
T ss_pred             EEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccC
Confidence            999999999999987543   478999999999999999999987   89999999999999999999999999986543


Q ss_pred             ccccc-----ccC----CCCCC--cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          645 DINSV-----GGK----QEDPN--SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       645 ~~~~~-----~~~----~~~~~--~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .....     ...    ...|.  .....+.++|||||||++|||+| |+.|+......  .....+. .......  | 
T Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~i~-~~~~~~~--~-  220 (257)
T cd05116         147 ADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN--EVTQMIE-SGERMEC--P-  220 (257)
T ss_pred             CCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHH-CCCCCCC--C-
Confidence            22110     000    00111  11234557999999999999998 89898643221  1122221 1111111  1 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                        ...    ...+.+++.+||+.||++||+|.+|+++|+.
T Consensus       221 --~~~----~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         221 --QRC----PPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             --CCC----CHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence              111    1336789999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.6e-35  Score=294.46  Aligned_cols=255  Identities=20%  Similarity=0.256  Sum_probs=177.4

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .|...+++|+|+||.||+|.. ++++.||||+.-..++.    --+|+++|++++|||||+|.-++....+.++   -..
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~---~~l   97 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY----KNRELQIMRKLDHPNIVRLLYFFSSSTESDE---VYL   97 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc----CcHHHHHHHhcCCcCeeeEEEEEEecCCCch---hHH
Confidence            355678999999999999995 46799999988655432    2468899999999999999988877654321   146


Q ss_pred             EEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEecCCCC
Q 004232          563 FLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLS  640 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~kl~DFGla  640 (766)
                      .+||||||. +|.+.++.-. .+..++-....-+..|+.+||+|||+.   +|+||||||.|+|+|.+ |.+||||||-|
T Consensus        98 nlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSA  173 (364)
T KOG0658|consen   98 NLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSA  173 (364)
T ss_pred             HHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcc
Confidence            789999998 8988887421 112244455666899999999999996   89999999999999965 89999999999


Q ss_pred             ccccccccc---c----cCCC-CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc--------
Q 004232          641 IVSEDINSV---G----GKQE-DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE--------  703 (766)
Q Consensus       641 ~~~~~~~~~---~----~~~~-~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~--------  703 (766)
                      +........   .    ++++ -......++.+.||||.|||+.||+-|++-|..+.... ..++..+...+        
T Consensus       174 K~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~m  253 (364)
T KOG0658|consen  174 KVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSM  253 (364)
T ss_pred             eeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhc
Confidence            876432211   1    1111 11223456778999999999999999998887533211 11111111100        


Q ss_pred             --CccccccccccCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 --GRQRLVDPVVMATS-----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 --~~~~~~d~~~~~~~-----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ...+...|.+....     ....-.+.++++.++++++|.+|.+..|++..
T Consensus       254 n~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  254 NPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             CcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence              11111222222111     11223457899999999999999999988765

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.6e-33  Score=293.05  Aligned_cols=237  Identities=22%  Similarity=0.363  Sum_probs=177.3

Q ss_pred             eecCCceeEEEEEec---CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE---NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||+|.+.   ++..||+|.+.... ....+++.+|+.++++++||||++++|+|...         ..++||
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~---------~~~lv~   73 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAE---------ALMLVM   73 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCC---------CeEEEE
Confidence            899999999999753   45679999987553 33456799999999999999999999988542         579999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus        74 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  148 (257)
T cd05115          74 EMASGGPLNKFLSGKK--DEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD  148 (257)
T ss_pred             EeCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCC
Confidence            9999999999987532  3488999999999999999999987   8999999999999999999999999998644321


Q ss_pred             ccc-----cc------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          647 NSV-----GG------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       647 ~~~-----~~------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      ...     ..      ..++.......+.++|||||||++||+++ |..|+.....  ......+ ........ +    
T Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~-~~~~~~~~-~----  220 (257)
T cd05115         149 DSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG--PEVMSFI-EQGKRLDC-P----  220 (257)
T ss_pred             ccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHHH-HCCCCCCC-C----
Confidence            110     00      00111112344568999999999999996 9999864322  1111111 11111110 1    


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      ..    ....+.+++.+||..+|++||+|.+|.+.|+..
T Consensus       221 ~~----~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         221 AE----CPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CC----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            11    123467899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.2e-33  Score=297.92  Aligned_cols=246  Identities=24%  Similarity=0.416  Sum_probs=185.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|...+.||+|+||.||+++.      .++..+|+|.++.......+.+.+|++++++++||||+++++++.+.+    
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~----   80 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGR----   80 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC----
Confidence            4567788999999999999963      246689999988766666778999999999999999999999987753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                          ..+++|||+++|+|.+++....+            ...+++..+..++.|++.|++|||+.   +++||||||+||
T Consensus        81 ----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~ni  153 (280)
T cd05092          81 ----PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNC  153 (280)
T ss_pred             ----ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhE
Confidence                57999999999999999875432            13478999999999999999999987   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQ  693 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~  693 (766)
                      ++++++.+||+|||++........  ..        +..++......++.++|||||||++|||++ |+.|+.....  .
T Consensus       154 l~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~  231 (280)
T cd05092         154 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN--T  231 (280)
T ss_pred             EEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH--H
Confidence            999999999999999864321110  00        111111122345678999999999999999 8888753322  1


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      +....+....   ....+.   ..    ...+.+++.+||+.||.+||++.||.+.|+
T Consensus       232 ~~~~~~~~~~---~~~~~~---~~----~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         232 EAIECITQGR---ELERPR---TC----PPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HHHHHHHcCc---cCCCCC---CC----CHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            1111111111   111111   11    123678999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.6e-33  Score=298.57  Aligned_cols=249  Identities=24%  Similarity=0.398  Sum_probs=184.1

Q ss_pred             CCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +|++.+.||+|+||.||+|+..      ....||+|.+.... ....+++.+|+.++++++||||++++++|...+    
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----   76 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDG----   76 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC----
Confidence            4677889999999999999842      23579999886543 344577899999999999999999999987653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENT---------------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF  615 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  615 (766)
                          ..++|+||+++|+|.+++....                     ....+++...+.++.+++.|++|||+.   +++
T Consensus        77 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~iv  149 (290)
T cd05045          77 ----PLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLV  149 (290)
T ss_pred             ----CcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Cee
Confidence                5799999999999999886421                     113478999999999999999999987   899


Q ss_pred             cCCCCCCceEEcCCCcEEEecCCCCccccccccc----c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCc
Q 004232          616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV----G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSV  684 (766)
Q Consensus       616 Hrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~----~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p  684 (766)
                      ||||||+||++++++.+||+|||++.........    .      ...++.......+.++|||||||++|||+| |+.|
T Consensus       150 H~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p  229 (290)
T cd05045         150 HRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNP  229 (290)
T ss_pred             hhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998653221110    0      000111111234567899999999999999 8888


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      +.....  ...+. ......  ....+   ...    ...+.+++.+||+.+|.+||+++||++.|+++..
T Consensus       230 ~~~~~~--~~~~~-~~~~~~--~~~~~---~~~----~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         230 YPGIAP--ERLFN-LLKTGY--RMERP---ENC----SEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             CCCCCH--HHHHH-HHhCCC--CCCCC---CCC----CHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            864321  11111 111110  11001   111    1347789999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.5e-33  Score=294.95  Aligned_cols=246  Identities=22%  Similarity=0.395  Sum_probs=186.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CC---ceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NG---TSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|+..+.||+|+||.||+|+.. ++   ..+|+|.++... ....+.+..|++++++++||||+++++++.+.+     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   79 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK-----   79 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC-----
Confidence            46777899999999999999864 33   379999987542 344677899999999999999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..  ..++|..+..++.+++.|++|||+.   +++||||||+||++++++.+|++||
T Consensus        80 ---~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~df  151 (268)
T cd05063          80 ---PAMIITEYMENGALDKYLRDHD--GEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDF  151 (268)
T ss_pred             ---CcEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCC
Confidence               6799999999999999987543  3488999999999999999999987   8999999999999999999999999


Q ss_pred             CCCcccccccccc-----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSVG-----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~~-----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |++..........           +..++......++.++|||||||++|||+| |+.|+.....  ......+.. .  
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~--~~~~~~i~~-~--  226 (268)
T cd05063         152 GLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN--HEVMKAIND-G--  226 (268)
T ss_pred             ccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH--HHHHHHHhc-C--
Confidence            9986543211110           011111112334567899999999999998 9999864322  111222211 1  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .....+       ......+.+++.+||+.+|++||+|.+|++.|+++
T Consensus       227 ~~~~~~-------~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         227 FRLPAP-------MDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CCCCCC-------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            111111       11123478999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-33  Score=293.76  Aligned_cols=241  Identities=25%  Similarity=0.416  Sum_probs=182.4

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +|++.+.||+|+||.||+|...++..+|+|.+..... ....+.+|++++++++||||+++++++.+.+        ..+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~~   75 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR--------PIF   75 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC--------ceE
Confidence            4677889999999999999987777899998864332 3356888999999999999999999887653        679


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++++|.+++.....  .++|.....++.+++.|++|||+.   +++||||||+||++++++.+||+|||+++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~  150 (256)
T cd05059          76 IVTEYMANGCLLNYLRERKG--KLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYV  150 (256)
T ss_pred             EEEecCCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceec
Confidence            99999999999999875432  478999999999999999999997   8999999999999999999999999998654


Q ss_pred             ccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          644 EDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       644 ~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .+.....         ...++......++.++|||||||++|||+| |+.|+.....  .+....+.. .  .....+  
T Consensus       151 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~-~--~~~~~~--  223 (256)
T cd05059         151 LDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN--SEVVESVSA-G--YRLYRP--  223 (256)
T ss_pred             ccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH--HHHHHHHHc-C--CcCCCC--
Confidence            3211100         111111112345568999999999999999 7888753322  111222111 1  011111  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       ...    ...+.+++.+||..+|++||+|.||++.|
T Consensus       224 -~~~----~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         224 -KLA----PTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             -CCC----CHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence             111    23478899999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.7e-33  Score=293.25  Aligned_cols=244  Identities=21%  Similarity=0.405  Sum_probs=184.9

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|...++..||+|.+..... ..+.+.+|+.++++++|||++++++++.+.         ..
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~---------~~   75 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEE---------PI   75 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCC---------Cc
Confidence            45778899999999999999988888999999875433 346789999999999999999999987532         46


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      +++|||+++|+|.+++++.. ...+++..+..++.+++.|++|||+.   +++||||||+||++++++.+||+|||++..
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~  151 (260)
T cd05070          76 YIVTEYMSKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARL  151 (260)
T ss_pred             EEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeee
Confidence            89999999999999987543 23478999999999999999999997   899999999999999999999999999865


Q ss_pred             cccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........         ...++......++.++|||||||++|||++ |..|+.....  .+....+.... ....  + 
T Consensus       152 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~~~-~~~~--~-  225 (260)
T cd05070         152 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN--REVLEQVERGY-RMPC--P-  225 (260)
T ss_pred             ccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCC-CCCC--C-
Confidence            43211100         111111112345668999999999999999 8888764221  11122221110 1111  0 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                            ......+.+++.+|++.+|++|||++++.+.|++
T Consensus       226 ------~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         226 ------QDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             ------CcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                  1112347789999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-33  Score=299.25  Aligned_cols=251  Identities=20%  Similarity=0.345  Sum_probs=180.6

Q ss_pred             cCCCcCCceecCCceeEEEEEecC---------------CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN---------------GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLG  546 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~---------------g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g  546 (766)
                      ++|++.+.||+|+||.||+++...               ...||+|.+... .......+.+|++++++++|||++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            568888999999999999987532               235899998754 2334567999999999999999999999


Q ss_pred             eeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC---------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccC
Q 004232          547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN  617 (766)
Q Consensus       547 ~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  617 (766)
                      ++...+        ..++||||+++|+|.+++.....         ...++|..++.++.+++.|++|||+.   +++||
T Consensus        85 ~~~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~  153 (295)
T cd05097          85 VCVSDD--------PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHR  153 (295)
T ss_pred             EEcCCC--------ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---Ceecc
Confidence            997653        67999999999999999864321         12368899999999999999999997   89999


Q ss_pred             CCCCCceEEcCCCcEEEecCCCCcccccccc--cccC--------CCCCCcccCCCCCCCEeehhHHHHHHhc--CCCcc
Q 004232          618 RVKTNNILLNEHRIAKLSDYGLSIVSEDINS--VGGK--------QEDPNSWEMTKLEDDVFSFGFMLLESVA--GPSVA  685 (766)
Q Consensus       618 dlk~~NILld~~~~~kl~DFGla~~~~~~~~--~~~~--------~~~~~~~~~~~~~~DV~SfGvil~Ellt--G~~p~  685 (766)
                      ||||+||++++++.+||+|||++........  ....        .++......++.++|||||||++|||++  |..|+
T Consensus       154 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~  233 (295)
T cd05097         154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPY  233 (295)
T ss_pred             ccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999864322111  0010        1111112345678999999999999998  45565


Q ss_pred             ccCcc-chHHHHhhhhcc-cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          686 ARKGQ-FLQEELDSLNSQ-EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       686 ~~~~~-~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      ..... ............ ........+.   ..    ...+.+++.+||+.+|++||+|++|++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         234 SLLSDEQVIENTGEFFRNQGRQIYLSQTP---LC----PSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             cccChHHHHHHHHHhhhhccccccCCCCC---CC----CHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            43221 111111111110 0000011111   11    134789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.6e-33  Score=292.79  Aligned_cols=244  Identities=22%  Similarity=0.419  Sum_probs=184.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|++.+.||+|+||.||+|... |..||+|.++...  ..+.+.+|+.++++++|+|+++++|++...+       +..
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-------~~~   75 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-------GGL   75 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCC-------Cce
Confidence            46788899999999999999865 7889999986543  3467889999999999999999999876543       357


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++++... ..+++.....++.+++.||+|||+.   +++||||||+||++++++.+|++|||+++.
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          76 YIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             EEEEECCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCcccee
Confidence            999999999999999876432 3478999999999999999999987   899999999999999999999999999865


Q ss_pred             cccccccc-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          643 SEDINSVG-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       643 ~~~~~~~~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ........     +..++......++.++|||||||++|||++ |+.|+.....  ......+.. +......     . 
T Consensus       152 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~--~~~~~~~~~-~~~~~~~-----~-  222 (256)
T cd05082         152 ASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVEK-GYKMDAP-----D-  222 (256)
T ss_pred             ccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhc-CCCCCCC-----C-
Confidence            43221111     111111122345668999999999999998 8888763221  111111111 1111111     1 


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                         .....+.+++.+||+.+|++||++.++++.|++
T Consensus       223 ---~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         223 ---GCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH  255 (256)
T ss_pred             ---CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence               112347789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.7e-33  Score=294.36  Aligned_cols=252  Identities=17%  Similarity=0.274  Sum_probs=188.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+. .++..+|||.+....   ....+++.+|+.+++.++||||+++++++.+.+      
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~------   75 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN------   75 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCC------
Confidence            4677889999999999999985 578999999886432   334567889999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ..+++|||+++++|.+++.... ....+++.....++.+++.|++|||+.   +++|+||||+||+++.++.+|++||
T Consensus        76 --~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df  150 (267)
T cd08229          76 --ELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             --eEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcc
Confidence              6899999999999999886422 234588999999999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc-----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSV-----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~-----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++.........     +.   ..++.......+.++||||||+++|||++|..|+.............+.      ...
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~------~~~  224 (267)
T cd08229         151 GLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE------QCD  224 (267)
T ss_pred             hhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhh------cCC
Confidence            998654322111     00   1111111234556799999999999999999998643222111111111      111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .+....   ......+.+++.+||+.+|.+||||.+|+++++++.
T Consensus       225 ~~~~~~---~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         225 YPPLPS---DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             CCCCCc---ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            111111   112234778899999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.7e-33  Score=295.85  Aligned_cols=234  Identities=24%  Similarity=0.377  Sum_probs=171.5

Q ss_pred             ceecCCceeEEEEEecC-------------------------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccc
Q 004232          490 IMGEGSYGKLYKGRLEN-------------------------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~-------------------------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      .||+|+||.||+|++..                         ...||+|.+........+++.+|+.++++++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999997421                         23589999876555556778889999999999999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                      +|+|.+..        ..++||||+++|+|..++.+..  ..+++..+..++.|+++||+|||+.   +|+||||||+||
T Consensus        82 ~~~~~~~~--------~~~lv~ey~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Ni  148 (274)
T cd05076          82 HGVCVRGS--------ENIMVEEFVEHGPLDVCLRKEK--GRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNI  148 (274)
T ss_pred             EEEEEeCC--------ceEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccE
Confidence            99998763        6799999999999999886532  3478899999999999999999987   899999999999


Q ss_pred             EEcCCC-------cEEEecCCCCccccccccc-c---cCCCCCC-cccCCCCCCCEeehhHHHHHHh-cCCCccccCccc
Q 004232          625 LLNEHR-------IAKLSDYGLSIVSEDINSV-G---GKQEDPN-SWEMTKLEDDVFSFGFMLLESV-AGPSVAARKGQF  691 (766)
Q Consensus       625 Lld~~~-------~~kl~DFGla~~~~~~~~~-~---~~~~~~~-~~~~~~~~~DV~SfGvil~Ell-tG~~p~~~~~~~  691 (766)
                      +++..+       .+|++|||++......... +   ...++.. .....+.++|||||||++||++ +|+.|+......
T Consensus       149 ll~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~  228 (274)
T cd05076         149 LLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPS  228 (274)
T ss_pred             EEeccCcccCccceeeecCCccccccccccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChH
Confidence            998643       4899999987543221111 1   1111111 1123466899999999999994 788887643221


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      ....   .....  ..+..+     .    ...+.+++.+||+.+|++||+|.+|++.|
T Consensus       229 ~~~~---~~~~~--~~~~~~-----~----~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         229 EKER---FYEKK--HRLPEP-----S----CKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             HHHH---HHHhc--cCCCCC-----C----ChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            1111   11100  011111     1    12377899999999999999999999887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-33  Score=302.75  Aligned_cols=228  Identities=18%  Similarity=0.222  Sum_probs=170.7

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||+|+.. +++.||+|+++...   ......+.+|+.++++++||||+++++++.+.+        ..++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------~~~lv~   72 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPE--------KLYLVL   72 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCC--------eEEEEE
Confidence            699999999999864 68899999986532   334567788999999999999999999887653        789999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        73 e~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~  146 (312)
T cd05585          73 AFINGGELFHHLQREG---RFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKD  146 (312)
T ss_pred             cCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccC
Confidence            9999999999987543   378899999999999999999997   8999999999999999999999999998653221


Q ss_pred             ccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCC
Q 004232          647 NSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS  718 (766)
Q Consensus       647 ~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  718 (766)
                      ...     +   +..++......++.++|||||||++|||+||+.||.....  ......+....  ..+.     ...+
T Consensus       147 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~--~~~~~~~~~~~--~~~~-----~~~~  217 (312)
T cd05585         147 DDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV--NEMYRKILQEP--LRFP-----DGFD  217 (312)
T ss_pred             CCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH--HHHHHHHHcCC--CCCC-----CcCC
Confidence            110     1   1111111223456789999999999999999999864322  12122221110  1110     1111


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHH
Q 004232          719 LESLSIVISIANKCICSESWSRPSFED  745 (766)
Q Consensus       719 ~~~~~~~~~l~~~C~~~~p~~RPs~~e  745 (766)
                          ..+.+++.+||+.||.+||++..
T Consensus       218 ----~~~~~li~~~L~~dp~~R~~~~~  240 (312)
T cd05585         218 ----RDAKDLLIGLLSRDPTRRLGYNG  240 (312)
T ss_pred             ----HHHHHHHHHHcCCCHHHcCCCCC
Confidence                23678899999999999986533

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2e-33  Score=293.23  Aligned_cols=245  Identities=22%  Similarity=0.385  Sum_probs=185.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|.+.+.||+|+||.||+|+..+...||+|+++.... ..+++.+|++++++++||||+++++++.+.         ..
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~---------~~   75 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---------PI   75 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCC---------Cc
Confidence            45888899999999999999987767899999975432 346789999999999999999999886442         46


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++.+.. ...++|..+..++.+++.||+|+|+.   +++||||||+||++++++.+||+|||.+..
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~  151 (262)
T cd05071          76 YIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARL  151 (262)
T ss_pred             EEEEEcCCCCcHHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceee
Confidence            99999999999999997542 23578999999999999999999997   899999999999999999999999999865


Q ss_pred             cccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........         +..++.......+.++|||||||++|||+| |..|+.....  ......+.. ..  ....  
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~--~~~~~~~~~-~~--~~~~--  224 (262)
T cd05071         152 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVER-GY--RMPC--  224 (262)
T ss_pred             ccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh--HHHHHHHhc-CC--CCCC--
Confidence            43221110         011111112345668999999999999999 7777753321  111111111 00  0000  


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                           ..+....+.+++.+|++.+|++||++.++.+.|++.
T Consensus       225 -----~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         225 -----PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             -----ccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence                 111223477999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.3e-33  Score=298.29  Aligned_cols=253  Identities=20%  Similarity=0.354  Sum_probs=182.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-----------------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-----------------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-----------------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      ++|++.+.||+|+||.||+++..                 ++..||+|.+... ......++.+|++++++++||||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            56888999999999999998532                 2446999998754 33446789999999999999999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP--------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFN  616 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH  616 (766)
                      ++++.+.+        ..++||||+++|+|.+++.+...        ...+++.....++.+++.|++|||+.   +++|
T Consensus        85 ~~~~~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H  153 (296)
T cd05095          85 LAVCITSD--------PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVH  153 (296)
T ss_pred             EEEEecCC--------ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ceec
Confidence            99987753        57999999999999999875421        12477889999999999999999997   8999


Q ss_pred             CCCCCCceEEcCCCcEEEecCCCCcccccccc--cccCC------CCC--CcccCCCCCCCEeehhHHHHHHhc--CCCc
Q 004232          617 NRVKTNNILLNEHRIAKLSDYGLSIVSEDINS--VGGKQ------EDP--NSWEMTKLEDDVFSFGFMLLESVA--GPSV  684 (766)
Q Consensus       617 rdlk~~NILld~~~~~kl~DFGla~~~~~~~~--~~~~~------~~~--~~~~~~~~~~DV~SfGvil~Ellt--G~~p  684 (766)
                      |||||+||++++++.+|++|||+++.......  .....      ..|  ......+.++|||||||++|||+|  |..|
T Consensus       154 ~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p  233 (296)
T cd05095         154 RDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQP  233 (296)
T ss_pred             ccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999865322110  00000      001  111345668999999999999998  5666


Q ss_pred             cccCccc-hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          685 AARKGQF-LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       685 ~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      +...... .............. ....+.. .    .+...+.+++.+||+.||.+||+|.||.+.|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         234 YSQLSDEQVIENTGEFFRDQGR-QVYLPKP-A----LCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             ccccChHHHHHHHHHHHhhccc-cccCCCC-C----CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            6432111 11111111000000 1111110 0    112347789999999999999999999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=5e-33  Score=291.38  Aligned_cols=244  Identities=20%  Similarity=0.248  Sum_probs=175.6

Q ss_pred             CceecCCceeEEEEEecC---CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          489 AIMGEGSYGKLYKGRLEN---GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      +.||+|+||.||+|...+   +..+|+|.++... ......+.+|+.++++++||||++++|++.+..        ..++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------~~~l   72 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT--------PYLL   72 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC--------CcEE
Confidence            368999999999998643   4579999886543 234457888999999999999999999987653        5799


Q ss_pred             EEEccCCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          565 VYEFMSNGNFRTHISENTP--GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ||||+++|+|.+++.....  ....++.....++.|++.|++|||+.   +++||||||+||+++.++++|++|||++..
T Consensus        73 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~  149 (269)
T cd05087          73 VMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHN  149 (269)
T ss_pred             EEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCcccccc
Confidence            9999999999999875332  23467778888999999999999997   899999999999999999999999999864


Q ss_pred             ccccccc--c----cC--CCCCCcc---------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          643 SEDINSV--G----GK--QEDPNSW---------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       643 ~~~~~~~--~----~~--~~~~~~~---------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      .......  .    ..  ...|...         ..++.++|||||||++|||++ |+.|+......  +..... ....
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~--~~~~~~-~~~~  226 (269)
T cd05087         150 KYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDE--QVLTYT-VREQ  226 (269)
T ss_pred             ccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChH--HHHHHH-hhcc
Confidence            3221100  0    00  0011110         123568999999999999996 99898643221  111111 1112


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      ...+.++.......    ..+.+++.+|| .+|++|||++||++.|+
T Consensus       227 ~~~~~~~~~~~~~~----~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         227 QLKLPKPRLKLPLS----DRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCCCCccCCCCC----hHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            22333333222222    22567889999 68999999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5e-34  Score=288.72  Aligned_cols=239  Identities=22%  Similarity=0.349  Sum_probs=186.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..|++.+.||+|.||+|-+|+- ..|..||||.+++.+   .++.-.+.+||+||+.++||||++.+.+|...+      
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkd------  126 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD------  126 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc------
Confidence            4578889999999999999984 679999999997654   445667899999999999999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+.+||||..+|+|++|+.+.+   .|+..+...++.||..|+.|+|.+   +++|||||.+|||||.++++||+|||
T Consensus       127 --KIvivMEYaS~GeLYDYiSer~---~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFG  198 (668)
T KOG0611|consen  127 --KIVIVMEYASGGELYDYISERG---SLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFG  198 (668)
T ss_pred             --eEEEEEEecCCccHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccc
Confidence              7999999999999999998765   388899999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccccccccC--------CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSVGGK--------QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~~~~--------~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ++-...+.....+.        ++......+..++.|-||+||+||-++.|.-||+...  ....+..+..    -.+.+
T Consensus       199 LSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D--hk~lvrQIs~----GaYrE  272 (668)
T KOG0611|consen  199 LSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD--HKRLVRQISR----GAYRE  272 (668)
T ss_pred             hhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCch--HHHHHHHhhc----ccccC
Confidence            99655433221111        1111111233568899999999999999999997432  2222333321    22233


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      |...        ..+..|+.+++..+|++|-|..+|...
T Consensus       273 P~~P--------SdA~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  273 PETP--------SDASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             CCCC--------chHHHHHHHHHhcCcccchhHHHHhhh
Confidence            3221        124467889999999999999998754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.2e-33  Score=319.60  Aligned_cols=242  Identities=17%  Similarity=0.225  Sum_probs=182.2

Q ss_pred             CCcCCceecCCceeEEEEEec-C-CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-N-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~-g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      |.+.+.||+|+||.||+|... + ++.||+|.+..........+.+|+.+++.++|||||+++++|.+.+        ..
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~--------~~  140 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDD--------KL  140 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECC--------EE
Confidence            788899999999999999743 3 6789999876655555667888999999999999999999998764        78


Q ss_pred             EEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      ++||||+++|+|.+++.+. .....+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       141 ~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~  217 (478)
T PTZ00267        141 LLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSK  217 (478)
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCce
Confidence            9999999999999988643 2233578889999999999999999997   89999999999999999999999999997


Q ss_pred             cccccccc------ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSV------GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~------~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ........      .++    .++......++.++|||||||++|||+||+.|+.....  ......+.. ....    +
T Consensus       218 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~--~~~~~~~~~-~~~~----~  290 (478)
T PTZ00267        218 QYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ--REIMQQVLY-GKYD----P  290 (478)
T ss_pred             ecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHh-CCCC----C
Confidence            64332110      011    11111123456689999999999999999999864322  111111111 1111    1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      . ....+    ..+.+++.+||+.||++||++.+++..
T Consensus       291 ~-~~~~s----~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        291 F-PCPVS----SGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             C-CccCC----HHHHHHHHHHhccChhhCcCHHHHHhC
Confidence            0 01111    236789999999999999999998753

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-34  Score=271.42  Aligned_cols=258  Identities=17%  Similarity=0.270  Sum_probs=193.6

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +.|.+.+.+|+|||..||.++ ..++..+|+|++......+.+...+|++..++++|||++++++++....+.   ....
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D---~~~~   97 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKD---GKHE   97 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhcc---Ccee
Confidence            468888999999999999998 678899999999887777888999999999999999999999998865421   2357


Q ss_pred             EEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          562 VFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .|+++.|...|+|.+.+.... .+..++..+.+.++.+|.+||++||+. .|++.||||||.|||+.+.+.+++.|||-+
T Consensus        98 ~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~  176 (302)
T KOG2345|consen   98 AYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSA  176 (302)
T ss_pred             EEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCc
Confidence            899999999999999987643 334689999999999999999999995 457999999999999999999999999987


Q ss_pred             ccccccc-----------------ccccCCCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh
Q 004232          641 IVSEDIN-----------------SVGGKQEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       641 ~~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~  700 (766)
                      ....-.-                 +..++.++..   .....+.++|||||||+||+|+.|..||+..-.    .-.++.
T Consensus       177 ~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~----~GgSla  252 (302)
T KOG2345|consen  177 TQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ----QGGSLA  252 (302)
T ss_pred             cccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh----cCCeEE
Confidence            4321100                 0001111110   112345688999999999999999999974211    000110


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      -.-.-.++.-|.-. ..    .+.+.++++.|++.||.+||+..+++..++..
T Consensus       253 LAv~n~q~s~P~~~-~y----se~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  253 LAVQNAQISIPNSS-RY----SEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             EeeeccccccCCCC-Cc----cHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            00000111111111 11    23477899999999999999999999988764

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.7e-33  Score=303.08  Aligned_cols=233  Identities=18%  Similarity=0.239  Sum_probs=174.6

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ++||+|+||.||+++. .+|..||+|+++...   ......+.+|+.++++++||||+++++++...+        ..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~--------~~~l   72 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD--------RLCF   72 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCC--------EEEE
Confidence            3689999999999985 468999999987542   233456778999999999999999999887653        7899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      ||||+++|+|..++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~E~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  146 (323)
T cd05595          73 VMEYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  146 (323)
T ss_pred             EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhcccc
Confidence            999999999998886543   478999999999999999999997   89999999999999999999999999986421


Q ss_pred             cc-cc-------cccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          645 DI-NS-------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       645 ~~-~~-------~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      .. ..       ..+..++......++.++|||||||++|||++|+.|+......  .....+....  ..+  |   ..
T Consensus       147 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~--~~~~~~~~~~--~~~--p---~~  217 (323)
T cd05595         147 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--RLFELILMEE--IRF--P---RT  217 (323)
T ss_pred             CCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHhcCC--CCC--C---CC
Confidence            11 10       0111111112234567899999999999999999998643221  1111111111  011  1   11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                      .+    ..+.+++.+|++.||.+||     ++.++++
T Consensus       218 ~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         218 LS----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             CC----HHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence            11    2367889999999999998     7888765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=4.2e-33  Score=291.22  Aligned_cols=252  Identities=18%  Similarity=0.279  Sum_probs=189.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|... +|+.||+|.++..   .....+.+.+|++++++++|+||+++++++.+.+      
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~------   75 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENN------   75 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCC------
Confidence            57888999999999999999975 7999999988642   2334567899999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ..++||||+++|+|..++.... ....+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+|++||
T Consensus        76 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~  150 (267)
T cd08224          76 --ELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDL  150 (267)
T ss_pred             --eEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEecc
Confidence              6899999999999999886532 234578999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++.........     +   ...++.......+.++|||||||++|||++|+.|+................ .......
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~  229 (267)
T cd08224         151 GLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEK-CDYPPLP  229 (267)
T ss_pred             ceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhc-CCCCCCC
Confidence            998654321110     0   011111112334567899999999999999999986433222221111111 1111110


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                              .......+.+++.+||..+|++||++.+|+++|+.+.
T Consensus       230 --------~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         230 --------ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             --------hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                    1111234678999999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.3e-33  Score=305.64  Aligned_cols=241  Identities=18%  Similarity=0.258  Sum_probs=180.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC--CceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||.||+|+...  +..||+|++....   ....+.+.+|+.+++.++||||+++++++.+.+    
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~----  104 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDES----  104 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCC----
Confidence            3568888999999999999998543  3689999986432   233567889999999999999999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++++||+|
T Consensus       105 ----~~~lv~Ey~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~D  174 (340)
T PTZ00426        105 ----YLYLVLEFVIGGEFFTFLRRNK---RFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTD  174 (340)
T ss_pred             ----EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEec
Confidence                7899999999999999997643   378888999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc-cccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          637 YGLSIVSEDINS-VGGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       637 FGla~~~~~~~~-~~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ||+++....... ..++    .++......++.++|||||||++|||+||+.||......  .....+...  ...+  |
T Consensus       175 FG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~--~~~~~i~~~--~~~~--p  248 (340)
T PTZ00426        175 FGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL--LIYQKILEG--IIYF--P  248 (340)
T ss_pred             CCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH--HHHHHHhcC--CCCC--C
Confidence            999976432211 1111    111111233566899999999999999999998743321  111122111  1111  1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                         ...+    ..+.+++.+|++.||.+|+     +++|+.+.
T Consensus       249 ---~~~~----~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        249 ---KFLD----NNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             ---CCCC----HHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence               1111    2356889999999999995     78887654

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=3.9e-33  Score=290.77  Aligned_cols=242  Identities=21%  Similarity=0.343  Sum_probs=176.2

Q ss_pred             CceecCCceeEEEEEec----CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|...    .+..||+|.+... .....+.+.+|+.+++.++||||++++++|...+       ...+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-------~~~~   73 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSE-------GSPL   73 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCC-------CCcE
Confidence            46899999999999853    2457999998643 3344678889999999999999999999887543       2468


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||+++|+|.+++.+..  ..+.+.....++.+++.|++|||+.   +++||||||+||++++++.+||+|||++...
T Consensus        74 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~  148 (262)
T cd05058          74 VVLPYMKHGDLRNFIRSET--HNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDI  148 (262)
T ss_pred             EEEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccc
Confidence            9999999999999987543  2367888889999999999999987   8999999999999999999999999998643


Q ss_pred             ccccc-----c-c------cCCCCCCcccCCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccCcccccc
Q 004232          644 EDINS-----V-G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       644 ~~~~~-----~-~------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      .....     . .      ...++.......+.++|||||||++|||++| .+|+.....  ......+.. ..  ....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~  223 (262)
T cd05058         149 YDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS--FDITVYLLQ-GR--RLLQ  223 (262)
T ss_pred             cCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHhc-CC--CCCC
Confidence            22110     0 0      0001111123345689999999999999996 445542211  111111111 10  0000


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      +.   .    ....+.+++.+||+.+|++||++.||+++|+++.
T Consensus       224 ~~---~----~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         224 PE---Y----CPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             CC---c----CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            10   0    1124778999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=3.5e-33  Score=292.50  Aligned_cols=245  Identities=24%  Similarity=0.451  Sum_probs=184.1

Q ss_pred             CCCcCCceecCCceeEEEEEec-CC---ceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NG---TSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +|++.+.||+|+||.||+|+.. ++   ..||||.++.. .....++|..|+.++++++||||+++++++.+.+      
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~------   78 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR------   78 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC------
Confidence            4677899999999999999864 33   36999998754 3444678999999999999999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++....  ..+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+|++|||
T Consensus        79 --~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg  151 (269)
T cd05065          79 --PVMIITEFMENGALDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFG  151 (269)
T ss_pred             --ceEEEEecCCCCcHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCc
Confidence              6799999999999999987543  3478999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccccccc-------c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          639 LSIVSEDINSV-------G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~-------~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ++.........       +      ...++.......+.++|||||||++||+++ |..|+.....  .+....+.. . 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~--~~~~~~i~~-~-  227 (269)
T cd05065         152 LSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN--QDVINAIEQ-D-  227 (269)
T ss_pred             cccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCH--HHHHHHHHc-C-
Confidence            98654321110       0      011111112344567999999999999887 9888864322  111111111 1 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                       .....+   .    +....+.+++.+||+.+|++||+|++|+.+|+.+
T Consensus       228 -~~~~~~---~----~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         228 -YRLPPP---M----DCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             -CcCCCc---c----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence             011001   1    1123367899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.8e-33  Score=297.96  Aligned_cols=252  Identities=19%  Similarity=0.238  Sum_probs=178.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+.. ++..||+|.++... ......+.+|++++++++||||+++++++.+.+        
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--------   76 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTER--------   76 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC--------
Confidence            56888899999999999999854 68999999986433 223456778999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++ +|.+++....  ..+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        77 ~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~  150 (288)
T cd07871          77 CLTLVFEYLDS-DLKQYLDNCG--NLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLA  150 (288)
T ss_pred             eEEEEEeCCCc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcce
Confidence            68999999985 8998886543  3478888999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----cc---CCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhh----------
Q 004232          641 IVSEDINSV-----GG---KQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLN----------  700 (766)
Q Consensus       641 ~~~~~~~~~-----~~---~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~----------  700 (766)
                      +........     +.   ..++.. ....++.++||||+||++|||+||+.||....... ...+....          
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (288)
T cd07871         151 RAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPG  230 (288)
T ss_pred             eeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhc
Confidence            653221110     00   111111 11234567899999999999999999986432111 11111000          


Q ss_pred             --cccCccccccccccCCCCH----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 --SQEGRQRLVDPVVMATSSL----ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 --~~~~~~~~~d~~~~~~~~~----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ..........|........    ..-..+.+++.+|++.||.+|||++|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         231 ITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             cccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence              0000001111110000000    01134678999999999999999999974

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.9e-33  Score=289.78  Aligned_cols=244  Identities=23%  Similarity=0.438  Sum_probs=187.0

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|... |+.||||.++.... ..+++.+|+.++++++|+||+++++++.+.+        ..
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~   75 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGN--------PL   75 (256)
T ss_pred             hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCC--------Ce
Confidence            46788899999999999999865 78899999976544 5678899999999999999999999988643        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++.+... ..++|..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||.++.
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          76 YIVTEYMAKGSLVDYLRSRGR-AVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             EEEEEecCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccc
Confidence            999999999999999876532 3589999999999999999999997   899999999999999999999999999865


Q ss_pred             cccccccc-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          643 SEDINSVG-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       643 ~~~~~~~~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ........     ...++.......+.++||||||+++||+++ |..|+......   ..............  +   ..
T Consensus       152 ~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~~~~~~~~~~~~~--~---~~  223 (256)
T cd05039         152 ASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---DVVPHVEKGYRMEA--P---EG  223 (256)
T ss_pred             cccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHHHhcCCCCCC--c---cC
Confidence            43221111     111111122344567899999999999997 88887643221   11111111111111  1   11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                          ....+.+++.+||+.+|++||+++|++++|+.
T Consensus       224 ----~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         224 ----CPPEVYKVMKDCWELDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             ----CCHHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence                12347789999999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=4.6e-33  Score=291.85  Aligned_cols=243  Identities=26%  Similarity=0.454  Sum_probs=179.2

Q ss_pred             CceecCCceeEEEEEec-CCc--eEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGT--SVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. ++.  .+|+|.++... ....+.+.+|++++.++ +||||++++++|...+        ..+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--------~~~   72 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG--------YLY   72 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCC--------Cce
Confidence            36899999999999864 343  57888887532 34456788999999999 7999999999987653        579


Q ss_pred             EEEEccCCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          564 LVYEFMSNGNFRTHISENT-------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      +||||+++|+|.+++.+..             ....+++..+..++.+++.|++|||+.   +++||||||+||++++++
T Consensus        73 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~  149 (270)
T cd05047          73 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY  149 (270)
T ss_pred             EEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCC
Confidence            9999999999999987532             112478999999999999999999986   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc--c-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcc
Q 004232          631 IAKLSDYGLSIVSEDINSV--G-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~--~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      .+|++|||++.........  .     +..++......++.++|||||||++|||+| |..||.....  ......+...
T Consensus       150 ~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~~~~~~~~  227 (270)
T cd05047         150 VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELYEKLPQG  227 (270)
T ss_pred             eEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH--HHHHHHHhCC
Confidence            9999999998532211100  0     111111112345668999999999999997 8888853221  1112222111


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      . ..+..     .    .....+.+++.+||+.+|.+||++.||+++|+.+.
T Consensus       228 ~-~~~~~-----~----~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         228 Y-RLEKP-----L----NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             C-CCCCC-----C----cCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            0 00000     0    11124679999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=5.4e-33  Score=288.50  Aligned_cols=242  Identities=18%  Similarity=0.277  Sum_probs=184.5

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+.. +++.|++|.+...  .....+.+.+|++++++++||||+++++++.+.+        
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   72 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKG--------   72 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCC--------
Confidence            4777889999999999999864 6899999998643  3445678899999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++++|.++++... ...+++.....++.+++.||.|||+.   +++||||||+||++++++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~  148 (256)
T cd08529          73 KLNIVMEYAENGDLHKLLKMQR-GRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVA  148 (256)
T ss_pred             EEEEEEEeCCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccc
Confidence            6899999999999999997642 34588999999999999999999986   8999999999999999999999999998


Q ss_pred             cccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +.........        ...++.......+.++|||||||++|||+||+.|+.....  ......+.. .....+.+  
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~-~~~~~~~~--  223 (256)
T cd08529         149 KLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ--GALILKIIR-GVFPPVSQ--  223 (256)
T ss_pred             eeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHc-CCCCCCcc--
Confidence            6543321110        1111111223456689999999999999999999864332  111111111 11111110  


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             .....+.+++.+||+.+|++||+|.++++.
T Consensus       224 -------~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         224 -------MYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             -------ccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence                   112347889999999999999999999763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.8e-33  Score=308.41  Aligned_cols=243  Identities=19%  Similarity=0.247  Sum_probs=176.2

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .|+..+.||+|+||+||+|+. .+++.||||++....   ....+.+.+|++++++++|||||++++++.+.+       
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~-------   74 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKD-------   74 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCC-------
Confidence            578889999999999999985 468899999996542   234567889999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++++||+|||+
T Consensus        75 -~~~lv~E~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl  147 (381)
T cd05626          75 -NLYFVMDYIPGGDMMSLLIRME---VFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGL  147 (381)
T ss_pred             -EEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcC
Confidence             7899999999999999987543   377888888999999999999997   899999999999999999999999999


Q ss_pred             Cccccccc---------------------------------------------------ccccC----CCCCCcccCCCC
Q 004232          640 SIVSEDIN---------------------------------------------------SVGGK----QEDPNSWEMTKL  664 (766)
Q Consensus       640 a~~~~~~~---------------------------------------------------~~~~~----~~~~~~~~~~~~  664 (766)
                      ++......                                                   ...++    .++......++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  227 (381)
T cd05626         148 CTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQ  227 (381)
T ss_pred             CcccccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCC
Confidence            74321000                                                   00000    000001123456


Q ss_pred             CCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHH--hccCCCCCCCC
Q 004232          665 EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANK--CICSESWSRPS  742 (766)
Q Consensus       665 ~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~--C~~~~p~~RPs  742 (766)
                      ++|||||||++|||+||+.||.......  ....+........+  |.. ...+.    .+.+++.+  |+..+|..||+
T Consensus       228 ~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~i~~~~~~~~~--~~~-~~~s~----~~~dli~~ll~~~~~~~~R~~  298 (381)
T cd05626         228 LCDWWSVGVILFEMLVGQPPFLAPTPTE--TQLKVINWENTLHI--PPQ-VKLSP----EAVDLITKLCCSAEERLGRNG  298 (381)
T ss_pred             ccceeehhhHHHHHHhCCCCCcCCCHHH--HHHHHHccccccCC--CCC-CCCCH----HHHHHHHHHccCcccccCCCC
Confidence            8999999999999999999996433211  11111111111111  110 01122    24566655  66777888999


Q ss_pred             HHHHHHH
Q 004232          743 FEDILWN  749 (766)
Q Consensus       743 ~~ev~~~  749 (766)
                      +.||+..
T Consensus       299 ~~~~l~h  305 (381)
T cd05626         299 ADDIKAH  305 (381)
T ss_pred             HHHHhcC
Confidence            9999764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.1e-33  Score=301.57  Aligned_cols=234  Identities=18%  Similarity=0.260  Sum_probs=175.7

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ++||+|+||.||+++. .+|+.||||++....   ......+.+|++++++++||||+++++++.+.+        ..++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--------~~~l   72 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKD--------RLCF   72 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC--------EEEE
Confidence            3689999999999985 468999999997532   234567888999999999999999999887653        7899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      ||||+++|+|..++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~Ey~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~  146 (328)
T cd05593          73 VMEYVNGGELFFHLSRER---VFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGI  146 (328)
T ss_pred             EEeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCC
Confidence            999999999998886543   488999999999999999999997   89999999999999999999999999986432


Q ss_pred             cc-ccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          645 DI-NSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       645 ~~-~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      .. ...    +   +..++......++.++|||||||++|||+||+.||.....  ......+...    ..   .....
T Consensus       147 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~--~~~~~~~~~~----~~---~~p~~  217 (328)
T cd05593         147 TDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFELILME----DI---KFPRT  217 (328)
T ss_pred             CcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH--HHHHHHhccC----Cc---cCCCC
Confidence            11 110    1   1111111123456789999999999999999999864322  1111111111    00   01111


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                      .+    ..+.+++.+|++.||.+||     ++.|+++.
T Consensus       218 ~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         218 LS----ADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             CC----HHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            11    2367889999999999997     88888754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=3.5e-33  Score=290.90  Aligned_cols=245  Identities=22%  Similarity=0.397  Sum_probs=186.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.++||+|+||.||+|...+++.||+|.+..... ..+++.+|+.++++++||||+++++++.+.         .
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---------~   74 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVTQE---------P   74 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEccC---------C
Confidence            356888899999999999999988899999999875443 346789999999999999999999886432         5


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .+++|||+++|+|.+++.... ...+++..+..++.+++.||+|||+.   +++||||||+||++++++.++++|||++.
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  150 (260)
T cd05067          75 IYIITEYMENGSLVDFLKTPE-GIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLAR  150 (260)
T ss_pred             cEEEEEcCCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCccee
Confidence            799999999999999886543 34588999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccc-cc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDIN-SV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~-~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ...... ..        .+..++.......+.++|||||||++||+++ |+.|+.....  ......+.. ......  +
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~-~~~~~~--~  225 (260)
T cd05067         151 LIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN--PEVIQNLER-GYRMPR--P  225 (260)
T ss_pred             ecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh--HHHHHHHHc-CCCCCC--C
Confidence            543111 10        0111111112334568999999999999999 9999864322  111111111 101111  0


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                         ...    ...+.+++.+||+.+|++||+++++...|+.
T Consensus       226 ---~~~----~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         226 ---DNC----PEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             ---CCC----CHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence               111    1347889999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=4.6e-33  Score=297.18  Aligned_cols=253  Identities=19%  Similarity=0.408  Sum_probs=188.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|.+.+.||+|+||.||+|+..        ++..||+|.+.... ....+++.+|+.+++.+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            356778899999999999999741        34579999986532 34457789999999999 899999999998765


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      .        ..++||||+++|+|.+++.+...             ...++|..+..++.|++.||+|||+.   +++|||
T Consensus        94 ~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~d  162 (304)
T cd05101          94 G--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRD  162 (304)
T ss_pred             C--------ceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---Ceeecc
Confidence            3        67999999999999999875421             23478899999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+||++++++.+||+|||+++.........          +..++......++.++|||||||++|||+| |..|+..
T Consensus       163 lkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~  242 (304)
T cd05101         163 LAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG  242 (304)
T ss_pred             cccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999986543211110          011111112345668999999999999998 6777753


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ..  ..+....+.. .....  .+       ......+.+++.+||+.+|.+||+|.||++.|+++....
T Consensus       243 ~~--~~~~~~~~~~-~~~~~--~~-------~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  300 (304)
T cd05101         243 IP--VEELFKLLKE-GHRMD--KP-------ANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTLT  300 (304)
T ss_pred             CC--HHHHHHHHHc-CCcCC--CC-------CCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHhh
Confidence            22  1222222211 11110  11       011234778999999999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-33  Score=303.52  Aligned_cols=246  Identities=18%  Similarity=0.277  Sum_probs=188.7

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|++.+.||+|+-|.|-.|+ ..+|+.+|||.+....   ......+++||.+|+-+.|||++++++++...       
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~-------   84 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENK-------   84 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccC-------
Confidence            557788999999999999998 5689999999997652   22346789999999999999999999998765       


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ..+|+|.||+++|.|++++.++++   +...+..+++.||..|+.|+|+.   +|+||||||+|+|||.+..+||+|||
T Consensus        85 -~~lylvlEyv~gGELFdylv~kG~---l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFG  157 (786)
T KOG0588|consen   85 -QHLYLVLEYVPGGELFDYLVRKGP---LPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFG  157 (786)
T ss_pred             -ceEEEEEEecCCchhHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccc
Confidence             479999999999999999987654   78889999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccc----ccc---cCCCCCCcc-cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDIN----SVG---GKQEDPNSW-EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~----~~~---~~~~~~~~~-~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +|.+-....    +++   +..++.... .+.+.++||||.|||||.|+||+-||+.+.  ....+-.+..  +..++.+
T Consensus       158 MAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN--ir~LLlKV~~--G~f~MPs  233 (786)
T KOG0588|consen  158 MASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN--IRVLLLKVQR--GVFEMPS  233 (786)
T ss_pred             eeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc--HHHHHHHHHc--CcccCCC
Confidence            995432211    111   111221222 233568999999999999999999998432  2222222211  1222221


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                           ..    ..++.+|+.+++..||.+|-|++||.+.--....
T Consensus       234 -----~I----s~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~  269 (786)
T KOG0588|consen  234 -----NI----SSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGY  269 (786)
T ss_pred             -----cC----CHHHHHHHHHHhccCccccccHHHHhhCchhhcC
Confidence                 11    1236688999999999999999999987544433

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=3.3e-33  Score=298.73  Aligned_cols=251  Identities=20%  Similarity=0.390  Sum_probs=187.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ++|.+.+.||+|+||.||+++..        +...+|+|.++... ....+++.+|+++++++ +||||++++++|.+.+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            56888999999999999999742        23579999997542 33456788899999999 7999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                              ..++||||+++|+|.+++....+             ...++|.+++.++.+++.||+|||+.   +++||||
T Consensus        98 --------~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dl  166 (307)
T cd05098          98 --------PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDL  166 (307)
T ss_pred             --------ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ccccccc
Confidence                    68999999999999999976432             23488999999999999999999987   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCcccccccc----cc------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccC
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINS----VG------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARK  688 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~----~~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~  688 (766)
                      ||+||++++++.+||+|||++........    ..      ...++......++.++|||||||++|||++ |..|+...
T Consensus       167 kp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~  246 (307)
T cd05098         167 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  246 (307)
T ss_pred             cHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999865432110    00      011111112335668999999999999998 77887532


Q ss_pred             ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          689 GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ..  ......+ ......+.         .......+.+++.+||+.+|++||+|.+|++.|+++.+.
T Consensus       247 ~~--~~~~~~~-~~~~~~~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         247 PV--EELFKLL-KEGHRMDK---------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             CH--HHHHHHH-HcCCCCCC---------CCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            21  1111111 11111110         011123477899999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=3e-33  Score=295.93  Aligned_cols=252  Identities=19%  Similarity=0.257  Sum_probs=179.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+.. +++.||||+++...  ....+.+.+|++++++++||||+++++++.+.+       
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------   73 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRG-------   73 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCC-------
Confidence            36888899999999999999975 68899999986542  233567888999999999999999999987653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||++++.+..+....   ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        74 -~~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~  146 (287)
T cd07848          74 -KLYLVFEYVEKNMLELLEEMP---NGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGF  146 (287)
T ss_pred             -EEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccC
Confidence             689999999998776554322   3478889999999999999999987   899999999999999999999999999


Q ss_pred             Cccccccccc------cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhh---------
Q 004232          640 SIVSEDINSV------GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLN---------  700 (766)
Q Consensus       640 a~~~~~~~~~------~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~---------  700 (766)
                      +.........      +.   ..++......++.++|||||||++|||++|+.||........ ..+..+.         
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  226 (287)
T cd07848         147 ARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMK  226 (287)
T ss_pred             cccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHH
Confidence            8654321110      00   111111123456689999999999999999999864321110 0011100         


Q ss_pred             ---cccCccccccccccCCCCH------HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 ---SQEGRQRLVDPVVMATSSL------ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 ---~~~~~~~~~d~~~~~~~~~------~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ..........+........      .....+.+++.+|++.||++|||++|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         227 LFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence               0000000000100000000      01234789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.1e-33  Score=299.70  Aligned_cols=252  Identities=19%  Similarity=0.284  Sum_probs=178.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||++..... .....+.+|+.++++++||||+++++++.+..       
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------   76 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKE-------   76 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCC-------
Confidence            367889999999999999999965 689999999865432 22346778999999999999999999988653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||++ |+|.+++.+..  ..+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+
T Consensus        77 -~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~  149 (303)
T cd07869          77 -TLTLVFEYVH-TDLCQYMDKHP--GGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGL  149 (303)
T ss_pred             -eEEEEEECCC-cCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCc
Confidence             6899999996 57877776542  2478888899999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc-----ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh---cccCc--
Q 004232          640 SIVSEDINSV-----GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN---SQEGR--  705 (766)
Q Consensus       640 a~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~---~~~~~--  705 (766)
                      +.........     +... ..|..   ....+.++||||+||++|||+||+.||..... ....+..+.   .....  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~  228 (303)
T cd07869         150 ARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKD-IQDQLERIFLVLGTPNEDT  228 (303)
T ss_pred             ceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCcc-HHHHHHHHHHHhCCCChhh
Confidence            8643221111     0000 01111   12245578999999999999999999874322 111111110   00000  


Q ss_pred             ----c--cccccccc---CCCCH-H------HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 ----Q--RLVDPVVM---ATSSL-E------SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ----~--~~~d~~~~---~~~~~-~------~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          .  ...++...   ..... +      ....+.+++.+|++.||++|||+.|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         229 WPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             ccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                0  00000000   00000 0      1134678999999999999999999975

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=2.4e-33  Score=295.07  Aligned_cols=248  Identities=24%  Similarity=0.402  Sum_probs=184.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      +++|.+.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.++++++||||+++++++.+.+  
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--   82 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL--   82 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--
Confidence            466888899999999999999864      36789999886543 334567899999999999999999999887653  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                            ..++||||+++|+|.+++.+...    ...++|..+..++.+|+.|++|||+.   +++||||||+||+++.++
T Consensus        83 ------~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~  153 (277)
T cd05036          83 ------PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKG  153 (277)
T ss_pred             ------CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccC
Confidence                  57999999999999999876432    12488999999999999999999997   799999999999998654


Q ss_pred             ---cEEEecCCCCccccccccc--c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          631 ---IAKLSDYGLSIVSEDINSV--G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       631 ---~~kl~DFGla~~~~~~~~~--~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                         .+|++|||+++........  .        ...++.......+.++|||||||++|||++ |..||.....  ....
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~--~~~~  231 (277)
T cd05036         154 PGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN--QEVM  231 (277)
T ss_pred             CCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHH
Confidence               6999999998754221110  0        011111112345678999999999999997 8888864322  1111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      ..+.... ...  .+   ...    ...+.+++.+||+.+|++||++.+|++.|++
T Consensus       232 ~~~~~~~-~~~--~~---~~~----~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         232 EFVTGGG-RLD--PP---KGC----PGPVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             HHHHcCC-cCC--CC---CCC----CHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence            1111111 000  01   111    1347789999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.4e-33  Score=319.25  Aligned_cols=256  Identities=20%  Similarity=0.257  Sum_probs=187.0

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ....++|.+.+.||+|+||+||+|+. .+|+.||||++...  .......+.+|+.++..++|+||+++++.+...+...
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            34457899999999999999999984 57999999998643  2344567889999999999999999988765443211


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                      ......+++||||+++|+|.+++.... ....+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||
T Consensus       108 ~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL  184 (496)
T PTZ00283        108 PENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKL  184 (496)
T ss_pred             cccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEE
Confidence            111124789999999999999986532 234588889999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCccccccccc-------c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          635 SDYGLSIVSEDINSV-------G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       635 ~DFGla~~~~~~~~~-------~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +|||+++........       +   +..++......++.++|||||||++|||++|+.||.....  ...+..... ..
T Consensus       185 ~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~--~~~~~~~~~-~~  261 (496)
T PTZ00283        185 GDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM--EEVMHKTLA-GR  261 (496)
T ss_pred             EecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHhc-CC
Confidence            999998654321100       0   0111111123456789999999999999999999864322  122221111 11


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .    ++ .....    ...+.+++.+||+.||.+||++.++++.
T Consensus       262 ~----~~-~~~~~----~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        262 Y----DP-LPPSI----SPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             C----CC-CCCCC----CHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            1    11 00111    1347789999999999999999999864

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=4.3e-33  Score=291.50  Aligned_cols=246  Identities=23%  Similarity=0.428  Sum_probs=185.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+|++.+.||+|+||.||+|+..    .+..+|+|.++... ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   78 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK-----   78 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC-----
Confidence            45778899999999999999853    23479999987543 334578899999999999999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..  ..+++.+...++.+++.|++|||+.   +++||||||+||+++.++.+|++||
T Consensus        79 ---~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~df  150 (267)
T cd05066          79 ---PVMIVTEYMENGSLDAFLRKHD--GQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDF  150 (267)
T ss_pred             ---ccEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCC
Confidence               6799999999999999997543  3478999999999999999999987   8999999999999999999999999


Q ss_pred             CCCcccccccccc-----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSVG-----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~~-----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |++..........           ...++......++.++|||||||++||+++ |..|+.....  .+....+.. .  
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~--~~~~~~~~~-~--  225 (267)
T cd05066         151 GLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN--QDVIKAIEE-G--  225 (267)
T ss_pred             CcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH--HHHHHHHhC-C--
Confidence            9986543221100           011111112345668999999999999887 9988864321  111222211 1  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .....+   ..    ....+.+++.+||+.+|.+||+|.+|++.|+++
T Consensus       226 ~~~~~~---~~----~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         226 YRLPAP---MD----CPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             CcCCCC---CC----CCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            011111   11    123467899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=2e-33  Score=296.58  Aligned_cols=245  Identities=20%  Similarity=0.349  Sum_probs=181.4

Q ss_pred             CCCcCCceecCCceeEEEEEec------CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +|++.+.||+|+||.||+|+..      ++..||||+++.... ...+.+.+|+.++++++||||+++++++.+.+    
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~----   81 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ----   81 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC----
Confidence            3566788999999999999853      357899999975433 33567889999999999999999999988753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENT-------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                          ..++++||+++++|.+++....             ....+++..+..++.|++.||+|+|+.   +|+||||||+|
T Consensus        82 ----~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~N  154 (283)
T cd05091          82 ----PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRN  154 (283)
T ss_pred             ----ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---Cccccccchhh
Confidence                5799999999999999885321             112478888999999999999999987   89999999999


Q ss_pred             eEEcCCCcEEEecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccch
Q 004232          624 ILLNEHRIAKLSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFL  692 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~  692 (766)
                      |++++++.+||+|||+++........   .       +..++.......+.++|||||||++|||+| |..|+....  .
T Consensus       155 il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--~  232 (283)
T cd05091         155 VLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--N  232 (283)
T ss_pred             eEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC--H
Confidence            99999999999999998654321110   0       011111112345668999999999999998 777775322  1


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .+....+.... ...+     ..    .....+.+++.+||+.+|.+||+|+||++.|+
T Consensus       233 ~~~~~~i~~~~-~~~~-----~~----~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         233 QDVIEMIRNRQ-VLPC-----PD----DCPAWVYTLMLECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             HHHHHHHHcCC-cCCC-----CC----CCCHHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence            22222221111 1111     11    11233778999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=8.9e-34  Score=281.73  Aligned_cols=254  Identities=19%  Similarity=0.258  Sum_probs=181.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhh--HHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYT--VRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~--~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|+..+.|++|.||.||+|+. ++++.||.|+++..+...  --.-.|||.+|.+++|||||.+..+.....      
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~------  148 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN------  148 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc------
Confidence            45677789999999999999984 578999999998654221  223578999999999999999988776543      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      .+.+|||||||+. ||...+....  ..+...+...+..|+.+|++|||++   -|+|||||++|+|+...|.+||+|||
T Consensus       149 ~d~iy~VMe~~Eh-DLksl~d~m~--q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFG  222 (419)
T KOG0663|consen  149 MDKIYIVMEYVEH-DLKSLMETMK--QPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFG  222 (419)
T ss_pred             cceeeeeHHHHHh-hHHHHHHhcc--CCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccc
Confidence            2469999999998 8999887654  3477778888999999999999998   78999999999999999999999999


Q ss_pred             CCcccccccccc--------cCC-CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-cCcccc
Q 004232          639 LSIVSEDINSVG--------GKQ-EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-EGRQRL  708 (766)
Q Consensus       639 la~~~~~~~~~~--------~~~-~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~~~~~~  708 (766)
                      +|+...+....-        +.. +.......++...|+||+|||+.||+++++-|.....  .+.+..+... +...+-
T Consensus       223 LAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE--~dQl~~If~llGtPte~  300 (419)
T KOG0663|consen  223 LAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSE--IDQLDKIFKLLGTPSEA  300 (419)
T ss_pred             hhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHHHhCCCccc
Confidence            998765431110        011 1111223466788999999999999999988874432  2222221110 000000


Q ss_pred             ccccc-------------------cCCCCHH-HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVV-------------------MATSSLE-SLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~-------------------~~~~~~~-~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +.|..                   ....... .-..-.+|....+.+||.+|-|++|.++.
T Consensus       301 iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  301 IWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             cCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            01100                   0000000 11345788899999999999999987653

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.1e-33  Score=293.75  Aligned_cols=246  Identities=17%  Similarity=0.261  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|++.+.||+|+||.||+|+. .+++.||+|++..........+.+|+.++++++||||+++++++...+        .
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~--------~   80 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSRE--------K   80 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCC--------E
Confidence            5688899999999999999985 578899999987654445567889999999999999999999987653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.++++...   .+++..+..++.|++.|++|||+.   +|+|||+||+||++++++.+||+|||++.
T Consensus        81 ~~iv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~  154 (267)
T cd06646          81 LWICMEYCGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAA  154 (267)
T ss_pred             EEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccce
Confidence            899999999999999887543   478899999999999999999987   89999999999999999999999999986


Q ss_pred             ccccccc--c---c---cCCCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          642 VSEDINS--V---G---GKQEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       642 ~~~~~~~--~---~---~~~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      .......  .   +   ...++..   .....+.++|||||||++|||++|+.|+......  .....+..    ..+..
T Consensus       155 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~--~~~~~~~~----~~~~~  228 (267)
T cd06646         155 KITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPM--RALFLMSK----SNFQP  228 (267)
T ss_pred             eecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchh--hhheeeec----CCCCC
Confidence            5422111  0   0   0111110   1122445789999999999999999987532211  11111100    01111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      +.....  ......+.+++.+||+.+|++||++++|++.|
T Consensus       229 ~~~~~~--~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         229 PKLKDK--TKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             CCCccc--cccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            111000  01123477899999999999999999998643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5e-33  Score=293.46  Aligned_cols=250  Identities=22%  Similarity=0.350  Sum_probs=186.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-----CCceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +|+..+.||+|+||.||+|++.     ++..||||.++..... ..+.+.+|++++++++||||+++++++...++    
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~----   80 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGG----   80 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCC----
Confidence            4667789999999999999854     3688999999765443 56789999999999999999999999876432    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++.....  .++|..+..++.+++.||+|||+.   +++||||||+||+++.++.+|++||
T Consensus        81 --~~~~lv~e~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~df  153 (284)
T cd05038          81 --RSLRLIMEYLPSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDF  153 (284)
T ss_pred             --CceEEEEecCCCCCHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEccc
Confidence              358999999999999999976532  488999999999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc---c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch------------HH
Q 004232          638 GLSIVSEDINSV---G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL------------QE  694 (766)
Q Consensus       638 Gla~~~~~~~~~---~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~------------~~  694 (766)
                      |++.........   .        ...++.......+.++||||||+++|||+||+.|+.......            ..
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd05038         154 GLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVT  233 (284)
T ss_pred             ccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHH
Confidence            998654321110   0        001111112345567999999999999999998865321111            01


Q ss_pred             HHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          695 ELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       695 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .+........  ....       .......+.+++.+||+.+|++||+|.||+++|+.+
T Consensus       234 ~~~~~~~~~~--~~~~-------~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         234 RLLELLKEGE--RLPR-------PPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHHHHHcCC--cCCC-------CccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            1111111000  0000       111123478899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.9e-33  Score=288.68  Aligned_cols=239  Identities=22%  Similarity=0.323  Sum_probs=180.0

Q ss_pred             CceecCCceeEEEEEecC----CceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|.+..    +..+|+|.+..... ...+++.+|++++++++|||||++++++...         ..+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---------~~~   71 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGE---------PLM   71 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCC---------ceE
Confidence            468999999999997532    36899999875543 3456789999999999999999999987642         579


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|.+++.+..   .+++..+..++.+++.|++|||..   +++||||||+||+++.++.+||+|||+++..
T Consensus        72 ~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~  145 (257)
T cd05060          72 LVMELAPLGPLLKYLKKRR---EIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRAL  145 (257)
T ss_pred             EEEEeCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEecccccccee
Confidence            9999999999999997653   478999999999999999999987   8999999999999999999999999998654


Q ss_pred             ccccccc-----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          644 EDINSVG-----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       644 ~~~~~~~-----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .......           ...++.......+.++|||||||++|||++ |..|+.....  ......+.. ..  ....+
T Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~-~~--~~~~~  220 (257)
T cd05060         146 GAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLES-GE--RLPRP  220 (257)
T ss_pred             ecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHc-CC--cCCCC
Confidence            3221110           001111112335568999999999999998 8998864322  111111111 11  11111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                         ..    ....+.+++.+||..+|++||++.+|.+.|+.+.
T Consensus       221 ---~~----~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         221 ---EE----CPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ---CC----CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence               11    1134778999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=7.6e-33  Score=294.15  Aligned_cols=253  Identities=20%  Similarity=0.349  Sum_probs=183.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC-----------------CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCccc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN-----------------GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVC  543 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~  543 (766)
                      ..+|++.+.||+|+||.||+|+...                 +..||+|.+.... ....+.+.+|++++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3568889999999999999987532                 3468999987543 345678999999999999999999


Q ss_pred             ccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC--------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 004232          544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP--------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF  615 (766)
Q Consensus       544 l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  615 (766)
                      ++++|...+        ..++|+||+++++|.+++.+...        ...+++.....++.+++.||+|||+.   +|+
T Consensus        84 ~~~~~~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~  152 (296)
T cd05051          84 LLGVCTVDP--------PLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFV  152 (296)
T ss_pred             EEEEEecCC--------CcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Ccc
Confidence            999987653        67999999999999999876431        12588999999999999999999987   899


Q ss_pred             cCCCCCCceEEcCCCcEEEecCCCCcccccccc--ccc--------CCCCCCcccCCCCCCCEeehhHHHHHHhc--CCC
Q 004232          616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS--VGG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVA--GPS  683 (766)
Q Consensus       616 Hrdlk~~NILld~~~~~kl~DFGla~~~~~~~~--~~~--------~~~~~~~~~~~~~~~DV~SfGvil~Ellt--G~~  683 (766)
                      ||||||+||+++.++.+|++|||++........  ...        ..++.......+.++|||||||++|||++  |..
T Consensus       153 H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~  232 (296)
T cd05051         153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQ  232 (296)
T ss_pred             ccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCC
Confidence            999999999999999999999999864322110  000        11111112345678999999999999998  566


Q ss_pred             ccccCccc-hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          684 VAARKGQF-LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       684 p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      |+...... ..................+ .. .    .....+.+++.+||+.||.+||++.||++.|+
T Consensus       233 p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         233 PYEHLTDQQVIENAGHFFRDDGRQIYLP-RP-P----NCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             CCCCcChHHHHHHHHhccccccccccCC-Cc-c----CCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            66432211 1111111111111111010 00 0    11134789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.8e-33  Score=306.42  Aligned_cols=244  Identities=21%  Similarity=0.316  Sum_probs=175.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+++. .+++.||||++....   ......+.+|+.++.+++||||+++++++.+..      
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~------   74 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKL------   74 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCC------
Confidence            4688899999999999999985 468999999997543   233457888999999999999999999888753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++++||+|||
T Consensus        75 --~~~lv~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFG  146 (363)
T cd05628          75 --NLYLIMEFLPGGDMMTLLMKKD---TLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFG  146 (363)
T ss_pred             --eEEEEEcCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeecc
Confidence              6899999999999999997643   488999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc----------------------------------------ccc---CCCCCCcccCCCCCCCEeehhHHH
Q 004232          639 LSIVSEDINS----------------------------------------VGG---KQEDPNSWEMTKLEDDVFSFGFML  675 (766)
Q Consensus       639 la~~~~~~~~----------------------------------------~~~---~~~~~~~~~~~~~~~DV~SfGvil  675 (766)
                      +++.......                                        .++   ..++......++.++|||||||++
T Consensus       147 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil  226 (363)
T cd05628         147 LCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIM  226 (363)
T ss_pred             CcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHH
Confidence            9864321100                                        000   000101113355689999999999


Q ss_pred             HHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHH--hccCCCCCCCCHHHHHHH
Q 004232          676 LESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANK--CICSESWSRPSFEDILWN  749 (766)
Q Consensus       676 ~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~--C~~~~p~~RPs~~ev~~~  749 (766)
                      |||++|+.||.....  ......+....  ..+..|... ..+.+    +.+++.+  |...++..||+++||++.
T Consensus       227 ~ell~G~~Pf~~~~~--~~~~~~i~~~~--~~~~~p~~~-~~s~~----~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         227 YEMLIGYPPFCSETP--QETYKKVMNWK--ETLIFPPEV-PISEK----AKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             HHHHhCCCCCCCCCH--HHHHHHHHcCc--CcccCCCcC-CCCHH----HHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            999999999964322  12222221111  111111111 11222    3344444  433455567999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=4e-33  Score=295.24  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=184.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      ..++|++.+.||+|+||.||+|...      .+..||+|.++... ......+.+|+.++++++||||+++++++.+.. 
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-   82 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ-   82 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-
Confidence            4567888999999999999999743      24589999886543 233456788999999999999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP-------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                             ..++||||+++|+|.+++.+...       ....++.....++.+++.||+|||+.   +|+||||||+||++
T Consensus        83 -------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili  152 (288)
T cd05061          83 -------PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMV  152 (288)
T ss_pred             -------CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEE
Confidence                   57999999999999999975321       12356778889999999999999987   89999999999999


Q ss_pred             cCCCcEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHH
Q 004232          627 NEHRIAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEE  695 (766)
Q Consensus       627 d~~~~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~  695 (766)
                      ++++.+|++|||+++.......  ..        ...++.......+.++|||||||++|||++ |..|+.....  .+.
T Consensus       153 ~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~--~~~  230 (288)
T cd05061         153 AHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN--EQV  230 (288)
T ss_pred             cCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH--HHH
Confidence            9999999999999864322110  00        011111112344668899999999999999 6777753221  111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ...+.... ....  +       ......+.+++.+|++.+|++||++.++++.|++..
T Consensus       231 ~~~~~~~~-~~~~--~-------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         231 LKFVMDGG-YLDQ--P-------DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             HHHHHcCC-CCCC--C-------CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            11111111 1110  0       011234789999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=7.4e-33  Score=286.56  Aligned_cols=238  Identities=21%  Similarity=0.402  Sum_probs=179.7

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEE
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      ++||+|+||.||+|...++..||+|.+.... ......+.+|++++++++||||++++++|.+.+        ..++|||
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~~lv~e   72 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ--------PIYIVME   72 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC--------ccEEEEE
Confidence            3689999999999998888999999987543 333457889999999999999999999987653        5799999


Q ss_pred             ccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccc
Q 004232          568 FMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN  647 (766)
Q Consensus       568 y~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~  647 (766)
                      |+++|+|.+++....  ..+++..+..++.+++.||.|+|+.   +++||||||+||++++++.+|++|||++.......
T Consensus        73 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (250)
T cd05085          73 LVPGGDFLSFLRKKK--DELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGI  147 (250)
T ss_pred             CCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccc
Confidence            999999999886543  2478999999999999999999987   89999999999999999999999999986432211


Q ss_pred             cc-c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCCC
Q 004232          648 SV-G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS  717 (766)
Q Consensus       648 ~~-~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  717 (766)
                      .. .        ...++......++.++|||||||++||+++ |..|+.....  ......+.. ......  +   .  
T Consensus       148 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~--~~~~~~~~~-~~~~~~--~---~--  217 (250)
T cd05085         148 YSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN--QQAREQVEK-GYRMSC--P---Q--  217 (250)
T ss_pred             cccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH--HHHHHHHHc-CCCCCC--C---C--
Confidence            10 0        011111112335568999999999999998 8888864321  111111111 111111  1   0  


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          718 SLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       718 ~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                        .....+.+++.+||+.+|++||++.||.++|.
T Consensus       218 --~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         218 --KCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             --CCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence              11234788999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=5.6e-33  Score=290.76  Aligned_cols=250  Identities=19%  Similarity=0.282  Sum_probs=183.3

Q ss_pred             HHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          478 LKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       478 l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++.+++++.....||+|+||.||+|+. .++..||+|.+........+.+.+|+.++++++||||++++|++.+.+    
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----   78 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENG----   78 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCC----
Confidence            344567777778999999999999985 467889999987766666778999999999999999999999988753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEe
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLS  635 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~  635 (766)
                          ..++|+||+++++|.++++........++..+..++.|++.|++|||+.   +|+||||||+||+++. ++.+||+
T Consensus        79 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~  151 (268)
T cd06624          79 ----FFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKIS  151 (268)
T ss_pred             ----EEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEe
Confidence                6899999999999999987542211127788888999999999999987   8999999999999986 6799999


Q ss_pred             cCCCCccccccccc----ccC--CCCCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          636 DYGLSIVSEDINSV----GGK--QEDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       636 DFGla~~~~~~~~~----~~~--~~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |||++.........    .+.  ...|...    ...+.++|||||||++|||++|+.|+..........+. ...... 
T Consensus       152 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~-~~~~~~-  229 (268)
T cd06624         152 DFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFK-VGMFKI-  229 (268)
T ss_pred             cchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhh-hhhhcc-
Confidence            99998643221110    000  0111111    12456899999999999999999998642221111111 000000 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          .+.+..    .....+.+++.+||+.+|.+||+|.||+.
T Consensus       230 ----~~~~~~----~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         230 ----HPEIPE----SLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             ----CCCCCc----ccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence                011111    11233678899999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-33  Score=283.84  Aligned_cols=256  Identities=20%  Similarity=0.330  Sum_probs=185.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccC--ChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPS--SKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~--~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..|...+.||+|+||.|..+.. .+|+.||||++..  ......++..||+++|+.++|+|||.+++.+..+. .  ...
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~-~--~~f   98 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPS-R--DKF   98 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccc-c--ccc
Confidence            3444467899999999999984 5799999999973  34556788899999999999999999999887632 1  123


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      +.+|+|+|+|+- ||.+.++...   .++......+..|+.+||.|+|+.   +|+||||||+|+|++.+...||+|||+
T Consensus        99 ~DvYiV~elMet-DL~~iik~~~---~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGL  171 (359)
T KOG0660|consen   99 NDVYLVFELMET-DLHQIIKSQQ---DLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGL  171 (359)
T ss_pred             ceeEEehhHHhh-HHHHHHHcCc---cccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccc
Confidence            679999999954 8999887643   378888888999999999999998   899999999999999999999999999


Q ss_pred             Cccccccc-------ccccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHH-----------
Q 004232          640 SIVSEDIN-------SVGGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EEL-----------  696 (766)
Q Consensus       640 a~~~~~~~-------~~~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~-----------  696 (766)
                      |+..+...       ...+.    ++....+..++...||||.|||+.||++|++-|.......+ ..+           
T Consensus       172 AR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~  251 (359)
T KOG0660|consen  172 ARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEED  251 (359)
T ss_pred             eeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHH
Confidence            98774320       01111    11223445677788999999999999999988875432111 111           


Q ss_pred             -hhhhcccCcccccccc-ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          697 -DSLNSQEGRQRLVDPV-VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       697 -~~~~~~~~~~~~~d~~-~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ..+.... ....+... ..+..+.     ..-..+++|..+.+..||.+|+|.+|.++.
T Consensus       252 l~~i~s~~-ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  252 LQKIRSEK-ARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHhccHH-HHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence             1111000 00010000 0000000     112347899999999999999999998765

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-33  Score=307.12  Aligned_cols=242  Identities=21%  Similarity=0.321  Sum_probs=178.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++....   ......+.+|+++++.++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~------   74 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDEN------   74 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCC------
Confidence            46888999999999999999864 68999999997532   233466888999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~E~~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg  146 (364)
T cd05599          75 --YLYLIMEYLPGGDMMTLLMKKD---TFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFG  146 (364)
T ss_pred             --eEEEEECCCCCcHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecc
Confidence              7899999999999999987643   488899999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc-------------------------------------------ccc---CCCCCCcccCCCCCCCEeehh
Q 004232          639 LSIVSEDINS-------------------------------------------VGG---KQEDPNSWEMTKLEDDVFSFG  672 (766)
Q Consensus       639 la~~~~~~~~-------------------------------------------~~~---~~~~~~~~~~~~~~~DV~SfG  672 (766)
                      +++.......                                           .++   ..++......++.++||||||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  226 (364)
T cd05599         147 LCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLG  226 (364)
T ss_pred             cceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecch
Confidence            9864321100                                           000   000001112345689999999


Q ss_pred             HHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC---HHHHHH
Q 004232          673 FMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS---FEDILW  748 (766)
Q Consensus       673 vil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs---~~ev~~  748 (766)
                      |++|||++|..||.....  ......+...  ...+..|... ..+    ..+.+++.+|+. +|.+|++   +.|+++
T Consensus       227 ~il~el~~G~~Pf~~~~~--~~~~~~i~~~--~~~~~~~~~~-~~s----~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         227 VIMYEMLVGYPPFCSDNP--QETYRKIINW--KETLQFPDEV-PLS----PEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             hHHHHhhcCCCCCCCCCH--HHHHHHHHcC--CCccCCCCCC-CCC----HHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            999999999999874332  1111111110  1111111100 111    235677888886 8999998   887765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3.2e-33  Score=302.97  Aligned_cols=256  Identities=21%  Similarity=0.355  Sum_probs=179.2

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .|++.+.||+|+||.||+|+. .+|..||||+++..  .......+.+|++++++++||||+++++++......   ...
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~---~~~   77 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRR---EFK   77 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCC---CCc
Confidence            377789999999999999985 47899999998643  223345788999999999999999999998754311   113


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ ++|.+++....   .+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~  150 (338)
T cd07859          78 DIYVVFELME-SDLHQVIKAND---DLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLA  150 (338)
T ss_pred             eEEEEEecCC-CCHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccc
Confidence            5899999996 68988886543   488999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc--------cccCC-CCCCc----ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcc----
Q 004232          641 IVSEDINS--------VGGKQ-EDPNS----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQ----  702 (766)
Q Consensus       641 ~~~~~~~~--------~~~~~-~~~~~----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~----  702 (766)
                      +.......        .+... ..|..    ...++.++|||||||++|||+||+.||....... ...+......    
T Consensus       151 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd07859         151 RVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPE  230 (338)
T ss_pred             cccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence            65321110        01000 01111    1345668999999999999999999986432111 0000000000    


Q ss_pred             -------cCccccc---cccccCCCCH---HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 -------EGRQRLV---DPVVMATSSL---ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 -------~~~~~~~---d~~~~~~~~~---~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             ....+..   .+........   .....+.+++.+||+.||++||+++||++.
T Consensus       231 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         231 TISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                   0000000   0000000000   011346789999999999999999999865

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2.2e-33  Score=299.29  Aligned_cols=249  Identities=22%  Similarity=0.386  Sum_probs=185.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      .++|.+.+.||+|+||.||+|..      .++..||||+++... ....+.+.+|+++++++ +||||++++++|...+ 
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~-  112 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGG-  112 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC-
Confidence            35688899999999999999973      235679999987543 33456789999999999 7999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             ..++||||+++|+|.++++... ...+++.++..++.+++.|++|||+.   +|+||||||+||+++.++.+|
T Consensus       113 -------~~~lv~e~~~~~~L~~~i~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~  181 (302)
T cd05055         113 -------PILVITEYCCYGDLLNFLRRKR-ESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVK  181 (302)
T ss_pred             -------ceEEEEEcCCCCcHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEE
Confidence                   6899999999999999987543 23489999999999999999999987   899999999999999999999


Q ss_pred             EecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcc
Q 004232          634 LSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       634 l~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      ++|||+++........   .       ...++.......+.++|||||||++|||+| |..|+......  .........
T Consensus       182 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~--~~~~~~~~~  259 (302)
T cd05055         182 ICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVD--SKFYKLIKE  259 (302)
T ss_pred             ECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCch--HHHHHHHHc
Confidence            9999998654321110   0       011111112334567899999999999998 88887643211  111111111


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .....  .+   ...    ...+.+++.+|+..+|++||++.||++.|+++
T Consensus       260 ~~~~~--~~---~~~----~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         260 GYRMA--QP---EHA----PAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             CCcCC--CC---CCC----CHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            11000  00   011    12477899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=6.5e-33  Score=289.40  Aligned_cols=235  Identities=23%  Similarity=0.342  Sum_probs=172.8

Q ss_pred             CceecCCceeEEEEEecC-------------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          489 AIMGEGSYGKLYKGRLEN-------------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      +.||+|+||.||+|++.+             ...||+|.+..........+.+|+.+++.++||||++++|+|.+..   
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~---   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV---   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---
Confidence            368999999999998532             2358999887665555667888999999999999999999998653   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc----
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI----  631 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~----  631 (766)
                           ..++||||+++|+|..++....  ..+++..+..++.||++||+|||+.   +|+||||||+|||++.++.    
T Consensus        78 -----~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~  147 (262)
T cd05077          78 -----ENIMVEEFVEFGPLDLFMHRKS--DVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGEC  147 (262)
T ss_pred             -----CCEEEEecccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCC
Confidence                 5699999999999998886543  3488999999999999999999987   8999999999999987654    


Q ss_pred             ---EEEecCCCCccccccccc-c---cCCCCC-CcccCCCCCCCEeehhHHHHHHh-cCCCccccCccchHHHHhhhhcc
Q 004232          632 ---AKLSDYGLSIVSEDINSV-G---GKQEDP-NSWEMTKLEDDVFSFGFMLLESV-AGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       632 ---~kl~DFGla~~~~~~~~~-~---~~~~~~-~~~~~~~~~~DV~SfGvil~Ell-tG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                         +|++|||++......... +   ...++. .....++.++|||||||++|||+ +|+.|+..........   ....
T Consensus       148 ~~~~~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~---~~~~  224 (262)
T cd05077         148 GPFIKLSDPGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKER---FYEG  224 (262)
T ss_pred             CceeEeCCCCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHH---HHhc
Confidence               899999998644221111 1   111111 11234566789999999999998 5777765322111111   1110


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                        ......+     .    ...+.+|+.+||+.||.+||+|.+|++.+
T Consensus       225 --~~~~~~~-----~----~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         225 --QCMLVTP-----S----CKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             --CccCCCC-----C----hHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence              0111111     1    12467899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-33  Score=304.66  Aligned_cols=243  Identities=23%  Similarity=0.353  Sum_probs=182.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||||+++...   ....+.+.+|+++++.++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~------   74 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEE------   74 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCC------
Confidence            36888899999999999999865 68999999987542   234567889999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+.   ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        75 --~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg  146 (350)
T cd05573          75 --HLYLVMEYMPGGDLMNLLIRK---DVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFG  146 (350)
T ss_pred             --eEEEEEcCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCC
Confidence              789999999999999999765   3478889999999999999999996   89999999999999999999999999


Q ss_pred             CCccccccc------------------------------cc----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcC
Q 004232          639 LSIVSEDIN------------------------------SV----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAG  681 (766)
Q Consensus       639 la~~~~~~~------------------------------~~----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG  681 (766)
                      ++.......                              ..    +.   ..++......++.++|||||||++|||++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g  226 (350)
T cd05573         147 LCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYG  226 (350)
T ss_pred             CCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccC
Confidence            986543221                              00    00   001111123456789999999999999999


Q ss_pred             CCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-HHHHHHH
Q 004232          682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS-FEDILWN  749 (766)
Q Consensus       682 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-~~ev~~~  749 (766)
                      +.||.....  ......+....  ....-|... ..+    ..+.+++.+|++ ||.+||+ ++|+++.
T Consensus       227 ~~Pf~~~~~--~~~~~~i~~~~--~~~~~p~~~-~~~----~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         227 FPPFYSDTL--QETYNKIINWK--ESLRFPPDP-PVS----PEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCCCCCCCH--HHHHHHHhccC--CcccCCCCC-CCC----HHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            999874332  11122221100  011111100 011    236688899997 9999999 9999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-33  Score=304.14  Aligned_cols=235  Identities=25%  Similarity=0.366  Sum_probs=179.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..++|.+..+||+|+||+|+++..+ +++.+|||.+++..   ..+.+....|..|+.-+ +||.+++|++.+...    
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~----  441 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTK----  441 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccC----
Confidence            3578999999999999999999965 68899999998764   34466777788887766 599999999887765    


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                          +++|.||||+.|||+..+.+.    ..++......+|..|+.||+|||++   +|||||||-+|||||.+|++||+
T Consensus       442 ----~~l~fvmey~~Ggdm~~~~~~----~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiA  510 (694)
T KOG0694|consen  442 ----EHLFFVMEYVAGGDLMHHIHT----DVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIA  510 (694)
T ss_pred             ----CeEEEEEEecCCCcEEEEEec----ccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEec
Confidence                389999999999996555442    2378888889999999999999998   89999999999999999999999


Q ss_pred             cCCCCccccccc-cc---ccCCC----CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          636 DYGLSIVSEDIN-SV---GGKQE----DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       636 DFGla~~~~~~~-~~---~~~~~----~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |||+++...... +.   .++++    +......|+..+|+|||||+||||+.|.+||..  ++..+.++++...+... 
T Consensus       511 DFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~g--ddEee~FdsI~~d~~~y-  587 (694)
T KOG0694|consen  511 DFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPG--DDEEEVFDSIVNDEVRY-  587 (694)
T ss_pred             ccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHhcCCCCC-
Confidence            999997543211 11   11211    111224566788999999999999999999973  33444455655443222 


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                         |..   .+    .+.+.|+.+.+..+|.+|--+
T Consensus       588 ---P~~---ls----~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  588 ---PRF---LS----KEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             ---CCc---cc----HHHHHHHHHHhccCcccccCC
Confidence               221   12    235678889999999999544

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=7.3e-33  Score=287.85  Aligned_cols=239  Identities=21%  Similarity=0.331  Sum_probs=180.3

Q ss_pred             CceecCCceeEEEEEecC--C--ceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLEN--G--TSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~--g--~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|.+.+  +  ..||||.+..... ...+.+.+|+.++++++||||+++++++.+ .        ..+
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~--------~~~   71 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-H--------PLM   71 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-C--------eEE
Confidence            468999999999998643  3  3699999987655 567789999999999999999999999876 2        679


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|.+++.+... ..++|.....++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus        72 ~v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~  147 (257)
T cd05040          72 MVTELAPLGSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRAL  147 (257)
T ss_pred             EEEEecCCCcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEeccccccccc
Confidence            99999999999999976542 4589999999999999999999997   8999999999999999999999999998654


Q ss_pred             cccccc-----------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          644 EDINSV-----------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       644 ~~~~~~-----------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ......           ....++......++.++|||||||++|||+| |+.|+......  +....+....  .....+
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~--~~~~~~  223 (257)
T cd05040         148 PQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS--QILKKIDKEG--ERLERP  223 (257)
T ss_pred             cccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHhcC--CcCCCC
Confidence            321100           0001111111245567999999999999999 99998532211  1111111111  011111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                             ......+.+++.+||+.+|++||++.+|+..|+
T Consensus       224 -------~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         224 -------EACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             -------ccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence                   111234778999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=5.8e-33  Score=289.34  Aligned_cols=244  Identities=23%  Similarity=0.403  Sum_probs=183.4

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|....+..||+|.+..... ..+.+.+|++++++++|||++++++++...         ..
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---------~~   75 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVSEE---------PI   75 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCc-cHHHHHHHHHHHHhCCCCCeeeEEEEEcCC---------Cc
Confidence            45778889999999999999987777899998865432 346788999999999999999999887432         46


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++++.. ...++|..+..++.+++.||+|||+.   +++||||||+||++++++.+||+|||++..
T Consensus        76 ~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~  151 (260)
T cd05069          76 YIVTEFMGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARL  151 (260)
T ss_pred             EEEEEcCCCCCHHHHHhhCC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceE
Confidence            89999999999999997543 23478999999999999999999987   899999999999999999999999999865


Q ss_pred             cccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........         ...++.......+.++|||||||++|||+| |+.|+.....  ......+....   ....+ 
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~~~~~~---~~~~~-  225 (260)
T cd05069         152 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN--REVLEQVERGY---RMPCP-  225 (260)
T ss_pred             ccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCC---CCCCC-
Confidence            43211100         011111112334567899999999999999 8888764321  11111111110   00001 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                            ......+.+++.+||+.||.+||++++|.+.|++
T Consensus       226 ------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         226 ------QGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ------cccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                  1112347789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.2e-33  Score=292.38  Aligned_cols=247  Identities=19%  Similarity=0.309  Sum_probs=184.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|.+.+.||+|+||.||+|...      .+..||+|.+.... ......+.+|+.++++++||||++++|++.+..  
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--   82 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ--   82 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC--
Confidence            356888899999999999999854      24689999986543 334567889999999999999999999988753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC-------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP-------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                            ..++||||+++|+|.+++.....       ...++|..+..++.+++.||+|||+.   +++||||||+||+++
T Consensus        83 ------~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~  153 (277)
T cd05032          83 ------PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVA  153 (277)
T ss_pred             ------CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEc
Confidence                  67999999999999999865322       12478899999999999999999987   899999999999999


Q ss_pred             CCCcEEEecCCCCcccccccc--c--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          628 EHRIAKLSDYGLSIVSEDINS--V--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~~~~~--~--------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                      +++.+||+|||+++.......  .        ....++.......+.++|||||||++||++| |..|+.....  ....
T Consensus       154 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~~~  231 (277)
T cd05032         154 EDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN--EEVL  231 (277)
T ss_pred             CCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCH--HHHH
Confidence            999999999999864322110  0        0011111112345678999999999999998 8888753322  1111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      ..+. ........+     ..    ...+.+++.+||+.+|++|||+.|++..|+
T Consensus       232 ~~~~-~~~~~~~~~-----~~----~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         232 KFVI-DGGHLDLPE-----NC----PDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             HHHh-cCCCCCCCC-----CC----CHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            1111 111111111     11    234779999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.8e-33  Score=293.96  Aligned_cols=250  Identities=20%  Similarity=0.356  Sum_probs=183.5

Q ss_pred             CCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .|++.+.||+|+||.||++++     .++..||+|.++... ....+.+.+|++++++++||||+++++++.+.+.    
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~----   80 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGG----   80 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC----
Confidence            367788999999999999974     357889999987543 3445679999999999999999999999876531    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++.+..  ..++|..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+||
T Consensus        81 --~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~df  153 (284)
T cd05079          81 --NGIKLIMEFLPSGSLKEYLPRNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDF  153 (284)
T ss_pred             --CceEEEEEccCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCC
Confidence              25799999999999999986542  2489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc-------ccc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc------------hHH
Q 004232          638 GLSIVSEDINS-------VGG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF------------LQE  694 (766)
Q Consensus       638 Gla~~~~~~~~-------~~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~------------~~~  694 (766)
                      |++........       ...    ..++......++.++|||||||++|||+|++.|.......            ...
T Consensus       154 g~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd05079         154 GLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVT  233 (284)
T ss_pred             ccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHH
Confidence            99865432111       000    0011111133556899999999999999987654211100            000


Q ss_pred             HHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          695 ELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       695 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      ..............         .......+.+++.+||+.+|++||++.+|++.++++
T Consensus       234 ~~~~~~~~~~~~~~---------~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         234 RLVRVLEEGKRLPR---------PPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHcCccCCC---------CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            00000000100000         011223578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=9.1e-33  Score=297.43  Aligned_cols=233  Identities=21%  Similarity=0.359  Sum_probs=173.3

Q ss_pred             CceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          489 AIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.||+|+||.||+++.    .+++.||||.++...    ......+..|+.+|++++||||+++++++.+.+        
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~--------   73 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGG--------   73 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCC--------
Confidence            5799999999999974    357899999987532    223456788999999999999999999987753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+..   .+.+.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~  147 (323)
T cd05584          74 KLYLILEYLSGGELFMHLEREG---IFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLC  147 (323)
T ss_pred             eEEEEEeCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCC
Confidence            6899999999999999987543   367788888999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +........     +   +..++.......+.++|||||||++|||++|+.||.....  ......+...  ...+ .  
T Consensus       148 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~--~~~~~~~~~~--~~~~-~--  220 (323)
T cd05584         148 KESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR--KKTIDKILKG--KLNL-P--  220 (323)
T ss_pred             eecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH--HHHHHHHHcC--CCCC-C--
Confidence            643211110     0   1111111223345689999999999999999999864332  1112222111  1111 0  


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                        ...+    ..+.+++.+|++.||++||     ++.+++.
T Consensus       221 --~~~~----~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         221 --PYLT----PEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             --CCCC----HHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence              1111    2367899999999999999     7777755

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=3e-33  Score=302.20  Aligned_cols=243  Identities=18%  Similarity=0.282  Sum_probs=181.2

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++. .+|+.||||+++...   ....+.+.+|+.+++.++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~------   74 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKD------   74 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCC------
Confidence            3688899999999999999985 468999999997543   234567889999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..  ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        75 --~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg  147 (330)
T cd05601          75 --NLYLVMEYQPGGDLLSLLNRYE--DQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFG  147 (330)
T ss_pred             --eEEEEECCCCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCC
Confidence              6899999999999999997652  2488889999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc------cc---CCCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          639 LSIVSEDINSV------GG---KQEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       639 la~~~~~~~~~------~~---~~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      ++.........      +.   ..++...      ...++.++|||||||++|||++|+.||.....  ...+..+....
T Consensus       148 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~--~~~~~~i~~~~  225 (330)
T cd05601         148 SAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS--AKTYNNIMNFQ  225 (330)
T ss_pred             CCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCH--HHHHHHHHcCC
Confidence            98654321110      10   1111000      22345789999999999999999999864322  12222222111


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ....+.+.   ...    ...+.+++.+|++ +|++||++.++++
T Consensus       226 ~~~~~~~~---~~~----~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         226 RFLKFPED---PKV----SSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CccCCCCC---CCC----CHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            11111111   011    1236678889997 9999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.4e-32  Score=288.06  Aligned_cols=247  Identities=21%  Similarity=0.371  Sum_probs=186.3

Q ss_pred             cCCCcCCceecCCceeEEEEEecC----CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|.+.+.||+|+||.||+|...+    ...||||...... ....+.+.+|+.++++++||||++++++|.+.      
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~------   79 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN------   79 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCC------
Confidence            347778899999999999998643    3468999886554 44567899999999999999999999988753      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..  ..+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+|++||
T Consensus        80 ---~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~  151 (270)
T cd05056          80 ---PVWIVMELAPLGELRSYLQVNK--YSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDF  151 (270)
T ss_pred             ---CcEEEEEcCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccC
Confidence               4689999999999999997543  2489999999999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc---------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINSV---------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~~---------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |+++........         .+..++......++.++|||||||++||+++ |..||.....  .+....+....   .
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~~~~~~~~~~---~  226 (270)
T cd05056         152 GLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN--NDVIGRIENGE---R  226 (270)
T ss_pred             ceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHcCC---c
Confidence            998654322110         0111111122345668999999999999996 9999864322  11122221111   1


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ...+   ..    ....+.+++.+|+..+|++||++.++++.|++...
T Consensus       227 ~~~~---~~----~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         227 LPMP---PN----CPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             CCCC---CC----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            1111   11    12347789999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=5.7e-33  Score=294.24  Aligned_cols=257  Identities=18%  Similarity=0.247  Sum_probs=175.5

Q ss_pred             CCCcCCceecCCceeEEEEEe--cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhC---CCCCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL--ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +|++.+.||+|+||.||+|+.  .++..||||.++...  ......+.+|+.+++.+   +||||++++++|......  
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~--   79 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD--   79 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC--
Confidence            588889999999999999985  247889999886432  22234556677776665   699999999998643211  


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                       .....++||||++ |+|.+++.... ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus        80 -~~~~~~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~D  153 (290)
T cd07862          80 -RETKLTLVFEHVD-QDLTTYLDKVP-EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD  153 (290)
T ss_pred             -CCCcEEEEEccCC-CCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEcc
Confidence             1135899999997 58998886543 23488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhc---c-cC
Q 004232          637 YGLSIVSEDINSVG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNS---Q-EG  704 (766)
Q Consensus       637 FGla~~~~~~~~~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~---~-~~  704 (766)
                      ||+++.........       +..++......++.++|||||||++|||++|+.||...... ....+.....   . +.
T Consensus       154 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~  233 (290)
T cd07862         154 FGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW  233 (290)
T ss_pred             ccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhc
Confidence            99986543221110       01111111234566899999999999999999998743321 1111111000   0 00


Q ss_pred             ccc--ccccccc--CCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQR--LVDPVVM--ATSSL-----ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~--~~d~~~~--~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...  +......  .....     .....+.+++.+|++.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         234 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            000  0000000  00000     01123578999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-33  Score=305.93  Aligned_cols=243  Identities=21%  Similarity=0.294  Sum_probs=176.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++. .+++.||||++....   ....+.+.+|++++++++|||||++++++.+..      
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~------   74 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQ------   74 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC------
Confidence            3688889999999999999985 478999999986532   233567888999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..|+||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfG  146 (377)
T cd05629          75 --YLYLIMEFLPGGDLMTMLIKYD---TFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFG  146 (377)
T ss_pred             --eeEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeecc
Confidence              7899999999999999987543   477888888999999999999997   89999999999999999999999999


Q ss_pred             CCccccccc----------------------------------------------------cccc---CCCCCCcccCCC
Q 004232          639 LSIVSEDIN----------------------------------------------------SVGG---KQEDPNSWEMTK  663 (766)
Q Consensus       639 la~~~~~~~----------------------------------------------------~~~~---~~~~~~~~~~~~  663 (766)
                      +++......                                                    ..++   ..++......++
T Consensus       147 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  226 (377)
T cd05629         147 LSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYG  226 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCC
Confidence            985321100                                                    0000   000001112345


Q ss_pred             CCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCC---
Q 004232          664 LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSR---  740 (766)
Q Consensus       664 ~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~R---  740 (766)
                      .++|||||||++|||+||+.||.....  ...+..+........+.+..   ..+    ..+.+++.+|++ +|.+|   
T Consensus       227 ~~~DiwSlGvil~elltG~~Pf~~~~~--~~~~~~i~~~~~~~~~p~~~---~~s----~~~~dli~~lL~-~~~~r~~r  296 (377)
T cd05629         227 QECDWWSLGAIMFECLIGWPPFCSENS--HETYRKIINWRETLYFPDDI---HLS----VEAEDLIRRLIT-NAENRLGR  296 (377)
T ss_pred             CceeeEecchhhhhhhcCCCCCCCCCH--HHHHHHHHccCCccCCCCCC---CCC----HHHHHHHHHHhc-CHhhcCCC
Confidence            689999999999999999999864332  11122221111111111110   011    236688889997 66665   


Q ss_pred             CCHHHHHHH
Q 004232          741 PSFEDILWN  749 (766)
Q Consensus       741 Ps~~ev~~~  749 (766)
                      |++.|+++.
T Consensus       297 ~~~~~~l~h  305 (377)
T cd05629         297 GGAHEIKSH  305 (377)
T ss_pred             CCHHHHhcC
Confidence            699988765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.4e-33  Score=301.29  Aligned_cols=230  Identities=25%  Similarity=0.364  Sum_probs=172.2

Q ss_pred             CceecCCceeEEEEEe----cCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          489 AIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +.||+|+||.||+++.    .+|+.||+|+++....  .....+.+|++++++++||||+++++++.+.+        ..
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~--------~~   73 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEG--------KL   73 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--------EE
Confidence            5799999999999874    3689999999875432  23456778999999999999999999988753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      |+||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        74 ~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          74 YLILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             EEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcc
Confidence            99999999999999986543   488999999999999999999997   899999999999999999999999999865


Q ss_pred             ccccccc----ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          643 SEDINSV----GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       643 ~~~~~~~----~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      .......    .++    .++.......+.++|||||||++|||+||+.|+.....  ......+....  ..+  |   
T Consensus       148 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~--~~~~~~i~~~~--~~~--p---  218 (318)
T cd05582         148 SIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR--KETMTMILKAK--LGM--P---  218 (318)
T ss_pred             cCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH--HHHHHHHHcCC--CCC--C---
Confidence            4322110    001    11111123456789999999999999999999864322  11122221110  111  0   


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFED  745 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~e  745 (766)
                      ...+    ..+.+++.+||+.||.+||++.+
T Consensus       219 ~~~~----~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         219 QFLS----PEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCC----HHHHHHHHHHhhcCHhHcCCCCC
Confidence            1111    23668899999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=7.4e-33  Score=321.39  Aligned_cols=254  Identities=18%  Similarity=0.272  Sum_probs=185.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||||++....   ....+++.+|++++++++||||+++++++.+.+      
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~------   75 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGD------   75 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCC------
Confidence            57888999999999999999854 68999999986532   233567899999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC--------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT--------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~--------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                        ..++||||+++|+|.+++....        .....++...+.++.+|++||+|||+.   +|+||||||+||+++.++
T Consensus        76 --~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg  150 (932)
T PRK13184         76 --PVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFG  150 (932)
T ss_pred             --EEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCC
Confidence              6899999999999999886421        112356778889999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCcccccccc-----------------------ccc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCc
Q 004232          631 IAKLSDYGLSIVSEDINS-----------------------VGG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSV  684 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~-----------------------~~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p  684 (766)
                      .+||+|||+++.......                       .+.   ..++.......+.++|||||||++|||+||+.|
T Consensus       151 ~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~P  230 (932)
T PRK13184        151 EVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP  230 (932)
T ss_pred             CEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence            999999999965411000                       000   000101112345678999999999999999999


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHHHHhhc
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP-SFEDILWNLQYAAQVQ  757 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-s~~ev~~~L~~~~~~~  757 (766)
                      +............         .+.+|..... ..+....+.+++.+|++.||++|| +++++.+.|+...+..
T Consensus       231 F~~~~~~ki~~~~---------~i~~P~~~~p-~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~~  294 (932)
T PRK13184        231 YRRKKGRKISYRD---------VILSPIEVAP-YREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQGS  294 (932)
T ss_pred             CCCcchhhhhhhh---------hccChhhccc-cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcC
Confidence            8643221111000         1111110000 001123367889999999999995 6788888888876643

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1e-32  Score=288.90  Aligned_cols=243  Identities=19%  Similarity=0.285  Sum_probs=172.9

Q ss_pred             ceecCCceeEEEEEecC---CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEE
Q 004232          490 IMGEGSYGKLYKGRLEN---GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~---g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      .||+|+||.||+|+..+   ...+|+|.+.... ......+.+|+.+++.++||||++++|+|.+.+        ..++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~--------~~~lv   73 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI--------PYLLV   73 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC--------ceEEE
Confidence            58999999999997543   4568888775432 334567889999999999999999999988653        68999


Q ss_pred             EEccCCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          566 YEFMSNGNFRTHISENTP--GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      |||+++|+|.+++.+...  ....++.....++.|++.|++|||+.   +|+||||||+||++++++.+||+|||++...
T Consensus        74 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~  150 (269)
T cd05042          74 LEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQ  150 (269)
T ss_pred             EEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEecccccccc
Confidence            999999999999976432  12346778889999999999999997   8999999999999999999999999998542


Q ss_pred             cccc---ccccC-----CCCCCc---------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          644 EDIN---SVGGK-----QEDPNS---------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       644 ~~~~---~~~~~-----~~~~~~---------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ....   .....     ...|..         ....+.++|||||||++|||++ |..|+.....  .+....... ...
T Consensus       151 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~--~~~~~~~~~-~~~  227 (269)
T cd05042         151 YPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSD--EQVLKQVVR-EQD  227 (269)
T ss_pred             ccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCH--HHHHHHHhh-ccC
Confidence            2110   00000     001110         1234558999999999999999 6777753321  111111111 112


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .++.++......+    ..+.+++..|| .||++||+++||.+.|.
T Consensus       228 ~~~~~~~~~~~~~----~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         228 IKLPKPQLDLKYS----DRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             ccCCCCcccccCC----HHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            2223332222222    23456778898 59999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=7.3e-33  Score=293.15  Aligned_cols=248  Identities=23%  Similarity=0.380  Sum_probs=184.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|+..+.||+|+||.||+|+..      ++..||+|.+.... ....+++.+|+.++++++||||++++++|.+.+  
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~--   81 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGK--   81 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--
Confidence            467888999999999999999853      46789999987543 334567999999999999999999999988753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC-------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP-------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF  615 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  615 (766)
                            ..++||||+++|+|.+++.+...                   ...+++..++.++.+++.||+|||+.   +++
T Consensus        82 ------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~  152 (288)
T cd05050          82 ------PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFV  152 (288)
T ss_pred             ------ccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence                  57999999999999999874321                   12477888999999999999999987   899


Q ss_pred             cCCCCCCceEEcCCCcEEEecCCCCccccccccc----c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCc
Q 004232          616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV----G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSV  684 (766)
Q Consensus       616 Hrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~----~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p  684 (766)
                      ||||||+||++++++.+||+|||++.........    .      +..++......++.++|||||||++|||++ |..|
T Consensus       153 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p  232 (288)
T cd05050         153 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQP  232 (288)
T ss_pred             cccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999998643211100    0      001111112345668999999999999998 7777


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      +.....  .+....+. .......  +       ......+.+++.+||+.+|++||++.||++.|+.
T Consensus       233 ~~~~~~--~~~~~~~~-~~~~~~~--~-------~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         233 YYGMAH--EEVIYYVR-DGNVLSC--P-------DNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             CCCCCH--HHHHHHHh-cCCCCCC--C-------CCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            643221  12111111 1111110  0       0112347889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.2e-33  Score=295.26  Aligned_cols=247  Identities=17%  Similarity=0.257  Sum_probs=184.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||+||+++.. +|..||+|++.... ....+.+.+|+++++.++||||+++++++.+.+        
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------   76 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNEN--------   76 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCC--------
Confidence            45777889999999999999854 68899999876543 334578899999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|..++.+..   .+++.....++.+++.|+.|||+..  +++||||||+||++++++.++|+|||++
T Consensus        77 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~  151 (284)
T cd06620          77 NICMCMEFMDCGSLDRIYKKGG---PIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVS  151 (284)
T ss_pred             EEEEEEecCCCCCHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcc
Confidence            7899999999999999887643   4789999999999999999999742  7999999999999999999999999998


Q ss_pred             cccccccc---ccc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc---------hHHHHhhhhcccCc
Q 004232          641 IVSEDINS---VGG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF---------LQEELDSLNSQEGR  705 (766)
Q Consensus       641 ~~~~~~~~---~~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~---------~~~~~~~~~~~~~~  705 (766)
                      ........   .+.   ..++.......+.++|||||||++||++||+.|+......         ....+..+....  
T Consensus       152 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  229 (284)
T cd06620         152 GELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP--  229 (284)
T ss_pred             cchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc--
Confidence            54321111   001   1111111234566899999999999999999998643211         011111111100  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                          .+..   ...+....+.+++.+||+.||++||++.||+++..
T Consensus       230 ----~~~~---~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~  268 (284)
T cd06620         230 ----PPRL---PSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPP  268 (284)
T ss_pred             ----CCCC---CchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCcc
Confidence                0111   01112234788999999999999999999998743

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.1e-32  Score=294.73  Aligned_cols=255  Identities=18%  Similarity=0.207  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+++.. ++..+|+|.++.. .....+++.+|++++++++||||++++++|.+.+        
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   72 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDG--------   72 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--------
Confidence            36888999999999999999854 6888999988654 2334567889999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++++..   .+++.....++.++++||.|||+.+  +++||||||+||++++++.+||+|||++
T Consensus        73 ~~~lv~ey~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~  147 (308)
T cd06615          73 EISICMEHMDGGSLDQVLKKAG---RIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVS  147 (308)
T ss_pred             EEEEEeeccCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCc
Confidence            7899999999999999997643   4788889999999999999999742  7999999999999999999999999998


Q ss_pred             ccccccccc------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHH-HHhhhhcccCcc-------
Q 004232          641 IVSEDINSV------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQE-ELDSLNSQEGRQ-------  706 (766)
Q Consensus       641 ~~~~~~~~~------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~-~~~~~~~~~~~~-------  706 (766)
                      .........      ....++......++.++|||||||++|||+||+.|+......... .+..........       
T Consensus       148 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (308)
T cd06615         148 GQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVS  227 (308)
T ss_pred             ccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCccccc
Confidence            654221110      011111111233556899999999999999999998532211111 010000000000       


Q ss_pred             --c---------------cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          707 --R---------------LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       707 --~---------------~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                        .               +........+.......+.+++.+||..+|++||++.||++.-
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         228 GHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence              0               0000000000000122477999999999999999999998773

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.3e-32  Score=295.16  Aligned_cols=251  Identities=20%  Similarity=0.392  Sum_probs=186.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|.+.+.||+|+||.||+|+..        ....||+|.++... .....++..|+++++++ +||||++++++|.+.
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            356778899999999999999731        24579999987542 34456788999999999 699999999998765


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      +        ..++||||+++|+|.+++.+..+             ...++|.+...++.|++.||+|||++   +++|||
T Consensus        91 ~--------~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~d  159 (314)
T cd05099          91 G--------PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRD  159 (314)
T ss_pred             C--------ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---Ceeecc
Confidence            3        68999999999999999975421             23488999999999999999999987   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+||++++++.+||+|||+++.........          +..++......++.++|||||||++|||++ |..|+..
T Consensus       160 lkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~  239 (314)
T cd05099         160 LAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPG  239 (314)
T ss_pred             ccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999996543211100          011111112345668999999999999999 7888753


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ...  ......+. ........     ..    ....+.+++.+||..+|++||++.|+++.|+++..
T Consensus       240 ~~~--~~~~~~~~-~~~~~~~~-----~~----~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         240 IPV--EELFKLLR-EGHRMDKP-----SN----CTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             CCH--HHHHHHHH-cCCCCCCC-----CC----CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            221  11111111 11111110     11    11246789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-32  Score=291.26  Aligned_cols=244  Identities=17%  Similarity=0.235  Sum_probs=179.6

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .|+..+.||+|+||.||++.. .+++.||||++.....   .....+.+|+.++++++||||+++++++.+.+       
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------   73 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD-------   73 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCC-------
Confidence            367788999999999999985 4689999999865322   22355778999999999999999999887653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|..++.... ...+++.....++.|++.|++|||+.   +++||||||+||++++++.+||+|||+
T Consensus        74 -~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~  148 (285)
T cd05605          74 -ALCLVLTLMNGGDLKFHIYNMG-NPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGL  148 (285)
T ss_pred             -eEEEEEeccCCCcHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCC
Confidence             6899999999999998886532 23488999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~  711 (766)
                      +.........    +   ...++.......+.++|||||||++|||++|+.||....... ...+...... ....+   
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~---  224 (285)
T cd05605         149 AVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKE-DQEEY---  224 (285)
T ss_pred             ceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhh-ccccc---
Confidence            8654322111    0   011111112334567899999999999999999987432211 1111111100 00000   


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                            .......+.+++.+||+.||.+||     +++++.+.
T Consensus       225 ------~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         225 ------SEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             ------CcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence                  011122367899999999999999     77787553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=4.8e-33  Score=304.95  Aligned_cols=245  Identities=18%  Similarity=0.252  Sum_probs=181.0

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|++.+.||+|+||.||+++.. +++.||+|+++...   ....+.+.+|+.+++.++||||+++++++.+..    
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~----  116 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDK----  116 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCC----
Confidence            4567899999999999999999854 68899999986432   233456788999999999999999999887653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++...    .++......++.+++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus       117 ----~~~lv~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~D  185 (370)
T cd05596         117 ----YLYMVMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLAD  185 (370)
T ss_pred             ----EEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEe
Confidence                789999999999999988653    266777888899999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc-----cccCCC--CCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          637 YGLSIVSEDINS-----VGGKQE--DPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       637 FGla~~~~~~~~-----~~~~~~--~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      ||++........     ..++..  .|..      ...++.++|||||||++|||+||+.||.....  ...+..+....
T Consensus       186 fG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~~~  263 (370)
T cd05596         186 FGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL--VGTYSKIMDHK  263 (370)
T ss_pred             ccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH--HHHHHHHHcCC
Confidence            999865432111     001110  1110      11245689999999999999999999874332  12222222111


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWN  749 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~  749 (766)
                      ....+.+.  . ..+    ..+.+++.+|++.+|.+  ||++.|+++.
T Consensus       264 ~~~~~~~~--~-~~s----~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         264 NSLTFPDD--I-EIS----KQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             CcCCCCCc--C-CCC----HHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            11111111  0 111    23678899999999988  9999999754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=5.3e-33  Score=299.58  Aligned_cols=235  Identities=19%  Similarity=0.258  Sum_probs=174.2

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      +.||+|+||.||+++. .+|..||+|.++...   ......+..|+++++.++||||+++++++.+.+        ..++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~--------~~~l   72 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD--------RLCF   72 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCC--------EEEE
Confidence            3689999999999985 478999999987532   233456778999999999999999999887653        7899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      ||||+++|+|..++.+..   .+++.....++.|++.||+|||+.  .+|+||||||+|||++.++.+||+|||+++...
T Consensus        73 v~E~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~  147 (325)
T cd05594          73 VMEYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  147 (325)
T ss_pred             EEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecC
Confidence            999999999998886543   488999999999999999999973  189999999999999999999999999986432


Q ss_pred             ccc-cc----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          645 DIN-SV----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       645 ~~~-~~----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ... ..    +.   ..++......++.++|||||||++|||+||+.||......  .....+....  ..+  |   ..
T Consensus       148 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~--~~~~~i~~~~--~~~--p---~~  218 (325)
T cd05594         148 KDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILMEE--IRF--P---RT  218 (325)
T ss_pred             CCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHH--HHHHHHhcCC--CCC--C---CC
Confidence            111 10    10   1111111234567899999999999999999998643221  1111111100  011  1   11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                      ..    ..+.+++.+|++.||++||     ++.++++.
T Consensus       219 ~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         219 LS----PEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             CC----HHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            11    2367889999999999996     88888754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=8.1e-33  Score=290.09  Aligned_cols=251  Identities=21%  Similarity=0.341  Sum_probs=183.3

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+++.|+..+.||+|+||.||+|+.. +++.||+|++.... .....+.+|+.+++++ +||||++++|+|......  .
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~--~   79 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP--G   79 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC--C
Confidence            35677888899999999999999854 68899999986543 2345788899999998 699999999998764311  0


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+++|+|.+++.... ...++|.....++.|++.|++|||+.   +|+||||||+||++++++.+||+||
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Df  155 (272)
T cd06637          80 MDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDF  155 (272)
T ss_pred             CCcEEEEEEEcCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccC
Confidence            1136899999999999999987543 23588999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-----c---cCCCCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          638 GLSIVSEDINSV-----G---GKQEDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       638 Gla~~~~~~~~~-----~---~~~~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      |++.........     +   +..++...     ...++.++|||||||++|||++|+.|+......  ........ ..
T Consensus       156 g~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~--~~~~~~~~-~~  232 (272)
T cd06637         156 GVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--RALFLIPR-NP  232 (272)
T ss_pred             CCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHH--HHHHHHhc-CC
Confidence            998654322111     0   11111100     123456799999999999999999998632211  11111111 10


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .....+.    ..    ...+.+++.+||..+|.+||++.||++
T Consensus       233 ~~~~~~~----~~----~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         233 APRLKSK----KW----SKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCCCCCC----Cc----CHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            1111111    11    124678999999999999999999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-32  Score=288.17  Aligned_cols=247  Identities=22%  Similarity=0.382  Sum_probs=186.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|++.+.||+|+||.||+|... +|.    .||+|.++... .....++.+|+.++++++||||++++|+|...     
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   81 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSS-----   81 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-----
Confidence            45777899999999999999854 333    58999887553 34457789999999999999999999998762     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++.+...  .+++.....++.|++.|++|||+.   +++||||||+||++++++.+||+|
T Consensus        82 ----~~~~v~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~d  152 (279)
T cd05057          82 ----QVQLITQLMPLGCLLDYVRNHKD--NIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITD  152 (279)
T ss_pred             ----ceEEEEecCCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECC
Confidence                57999999999999999976432  388999999999999999999996   899999999999999999999999


Q ss_pred             CCCCccccccccc----c------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV----G------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~----~------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........    .      +..++......++.++|||||||++||++| |+.|+.....  .+....+.. .  
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~-~--  227 (279)
T cd05057         153 FGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA--VEIPDLLEK-G--  227 (279)
T ss_pred             CcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH--HHHHHHHhC-C--
Confidence            9998654322110    0      000111111344568999999999999999 9999864321  111111111 1  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....+..   .+    ..+.+++.+||..+|.+||++.++++.|..+.+
T Consensus       228 ~~~~~~~~---~~----~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~  270 (279)
T cd05057         228 ERLPQPPI---CT----IDVYMVLVKCWMIDAESRPTFKELINEFSKMAR  270 (279)
T ss_pred             CCCCCCCC---CC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            11111111   11    236788999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.5e-32  Score=285.63  Aligned_cols=233  Identities=24%  Similarity=0.357  Sum_probs=172.6

Q ss_pred             CceecCCceeEEEEEecC-C----------ceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          489 AIMGEGSYGKLYKGRLEN-G----------TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-g----------~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +.||+|+||.||+|...+ +          ..|++|.+...... .+.+.+|+.++++++||||++++|+|.. .     
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~-----   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-D-----   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-C-----
Confidence            468999999999999753 3          25788877654433 6788999999999999999999999876 3     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-------
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-------  630 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-------  630 (766)
                         ..++||||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++       
T Consensus        74 ---~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~  145 (259)
T cd05037          74 ---ENIMVEEYVKFGPLDVFLHREKN--NVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVP  145 (259)
T ss_pred             ---CcEEEEEcCCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCce
Confidence               46899999999999999976432  488999999999999999999987   899999999999999887       


Q ss_pred             cEEEecCCCCccccccccc----ccCCCCCCccc--CCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhccc
Q 004232          631 IAKLSDYGLSIVSEDINSV----GGKQEDPNSWE--MTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~----~~~~~~~~~~~--~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      .+|++|||++.........    ....++.....  .++.++|||||||++|||++| ..|+.....  ........ . 
T Consensus       146 ~~kl~Dfg~a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~--~~~~~~~~-~-  221 (259)
T cd05037         146 FIKLSDPGIPITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS--SEKERFYQ-D-  221 (259)
T ss_pred             eEEeCCCCcccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc--hhHHHHHh-c-
Confidence            7999999998654321111    11111111112  456689999999999999995 666543211  11111110 0 


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       ......+      .   ...+.+++.+||+.+|.+||++.||++.|
T Consensus       222 -~~~~~~~------~---~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         222 -QHRLPMP------D---CAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             -CCCCCCC------C---chHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence             0011111      0   14578999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.7e-32  Score=284.28  Aligned_cols=245  Identities=20%  Similarity=0.384  Sum_probs=185.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|...++..+|+|.+.... ...+.+.+|++++++++|+||+++++++.+.         .
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---------~   74 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKE---------P   74 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcCC---------C
Confidence            35688889999999999999998778889999887543 3456788999999999999999999987652         5


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .+++|||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||.+.
T Consensus        75 ~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          75 IYIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             eEEEEEeCCCCcHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCccee
Confidence            799999999999999997643 24578999999999999999999986   89999999999999999999999999986


Q ss_pred             ccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .........         ...++.......+.++|||||||++||++| |+.|+......  .....+. .......  +
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~-~~~~~~~--~  225 (260)
T cd05073         151 VIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALE-RGYRMPR--P  225 (260)
T ss_pred             eccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHh-CCCCCCC--c
Confidence            543211110         011111112335668999999999999999 88888643221  1111111 1101000  0


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                         .    .....+.+++.+||+.+|++||++.++.+.|+.
T Consensus       226 ---~----~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         226 ---E----NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             ---c----cCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence               1    112347789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1e-32  Score=294.27  Aligned_cols=247  Identities=23%  Similarity=0.372  Sum_probs=182.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|+..+.||+|+||.||+|+.. +|.    .||+|.+.... .....++.+|+.++++++||||++++|+|...     
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-----   81 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-----   81 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-----
Confidence            45677789999999999999853 444    47899886543 23345788999999999999999999998753     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++++||+++|+|.+++....  ..+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|
T Consensus        82 ----~~~~v~e~~~~g~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~D  152 (303)
T cd05110          82 ----TIQLVTQLMPHGCLLDYVHEHK--DNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITD  152 (303)
T ss_pred             ----CceeeehhcCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcc
Confidence                3579999999999999987543  2478899999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc----cc------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV----GG------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~----~~------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........    ..      ..++.......+.++|||||||++|||+| |+.|+.......   ......... 
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~---~~~~~~~~~-  228 (303)
T cd05110         153 FGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE---IPDLLEKGE-  228 (303)
T ss_pred             ccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHHCCC-
Confidence            9999754321110    00      00111112334567899999999999998 888875432111   111111111 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....+.   ..    ...+.+++.+||..+|++||+|+++++.|+++..
T Consensus       229 -~~~~~~---~~----~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~  270 (303)
T cd05110         229 -RLPQPP---IC----TIDVYMVMVKCWMIDADSRPKFKELAAEFSRMAR  270 (303)
T ss_pred             -CCCCCC---CC----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence             111111   11    1246788999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=1.3e-32  Score=296.51  Aligned_cols=231  Identities=23%  Similarity=0.343  Sum_probs=169.7

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHH---HhCCCCCcccccceeecCCCCCCc
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLL---AKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l---~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      |++.+.||+|+||.||+|+.. +|+.||||+++...   ....+.+.+|+.++   ++++||||+++++++.+.+     
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~-----   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTED-----   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCC-----
Confidence            566789999999999999854 68999999997542   22345566666554   5678999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..|+||||+++|+|..++++.    .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        76 ---~~~lv~E~~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Df  145 (324)
T cd05589          76 ---HVCFVMEYAAGGDLMMHIHTD----VFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADF  145 (324)
T ss_pred             ---EEEEEEcCCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcc
Confidence               789999999999999887642    489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |+++........     +   +..++......++.++|||||||++|||++|+.||.....  ......+.....  .. 
T Consensus       146 g~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~--~~~~~~i~~~~~--~~-  220 (324)
T cd05589         146 GLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE--EEVFDSIVNDEV--RY-  220 (324)
T ss_pred             cCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCC--CC-
Confidence            998643211110     0   1111111123456689999999999999999999864322  122222211110  00 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                       |   ...+    ..+.+++.+|++.||.+||++
T Consensus       221 -p---~~~~----~~~~~li~~~L~~dP~~R~~~  246 (324)
T cd05589         221 -P---RFLS----REAISIMRRLLRRNPERRLGS  246 (324)
T ss_pred             -C---CCCC----HHHHHHHHHHhhcCHhHcCCC
Confidence             1   1111    236789999999999999953

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-32  Score=284.34  Aligned_cols=259  Identities=17%  Similarity=0.327  Sum_probs=183.9

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHH--hCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLA--KLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~--~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..++.++||+|+||.||||++. ++.||||+++..   ..+.|..|-+|.+  .++|+||++++++-....+.    ..+
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~---~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~----~~e  282 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ---EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTAD----RME  282 (534)
T ss_pred             chhhHHHhhcCccceeehhhcc-CceeEEEecCHH---HHHHHHhHHHHHhccCccchhHHHhhchhccCCcc----ccc
Confidence            3455678999999999999986 489999999654   3456777777665  46899999999875443321    247


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------CCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG------VIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                      ++||+||.++|+|.+||..+    .++|....+++..+++||+|||+.      ..|+|+|||||++|||+..|+++.|+
T Consensus       283 ywLVt~fh~kGsL~dyL~~n----tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIa  358 (534)
T KOG3653|consen  283 YWLVTEFHPKGSLCDYLKAN----TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIA  358 (534)
T ss_pred             eeEEeeeccCCcHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEee
Confidence            89999999999999999865    489999999999999999999984      34789999999999999999999999


Q ss_pred             cCCCCcccccccccccCC--CCCCcccCC-------C-------CCCCEeehhHHHHHHhcCCCccc-----c-Cc----
Q 004232          636 DYGLSIVSEDINSVGGKQ--EDPNSWEMT-------K-------LEDDVFSFGFMLLESVAGPSVAA-----R-KG----  689 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~~--~~~~~~~~~-------~-------~~~DV~SfGvil~ElltG~~p~~-----~-~~----  689 (766)
                      |||+|.........+...  -...+++.+       .       .+.||||+|.|||||++.-...+     . .-    
T Consensus       359 DFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~  438 (534)
T KOG3653|consen  359 DFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEA  438 (534)
T ss_pred             ccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhH
Confidence            999997654322211110  000111111       1       13699999999999998632221     0 00    


Q ss_pred             ----cchHHHHhhhh-cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          690 ----QFLQEELDSLN-SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       690 ----~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                          .-..+.+...+ ....+..+.|.-. ..   ..+..+.+.+..||..||+.|-|+.=|.+++.++....+
T Consensus       439 evG~hPt~e~mq~~VV~kK~RP~~p~~W~-~h---~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  439 EVGNHPTLEEMQELVVRKKQRPKIPDAWR-KH---AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             HhcCCCCHHHHHHHHHhhccCCCChhhhh-cC---ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence                01112222222 2222333333211 11   345567889999999999999999999999988876544

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=9e-33  Score=298.10  Aligned_cols=231  Identities=19%  Similarity=0.277  Sum_probs=168.9

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +++.||+|.++...   ....+.+.+|+.++.++ +||||+++++++.+.+        ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~--------~~~   72 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES--------RLF   72 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCC--------EEE
Confidence            46999999999999854 68899999987542   23445677888888877 7999999999987753        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~E~~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~  146 (329)
T cd05618          73 FVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  146 (329)
T ss_pred             EEEeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccc
Confidence            9999999999998886543   488999999999999999999997   8999999999999999999999999998643


Q ss_pred             ccccc----c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc------chHHHHhhhhcccCccccc
Q 004232          644 EDINS----V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ------FLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       644 ~~~~~----~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~------~~~~~~~~~~~~~~~~~~~  709 (766)
                      .....    . +   +..++......++.++|||||||++|||+||+.||.....      ............. ...+.
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~-~~~~p  225 (329)
T cd05618         147 LRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK-QIRIP  225 (329)
T ss_pred             cCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcC-CCCCC
Confidence            21110    0 0   1111111123456689999999999999999999852110      1111111111111 11111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                           ...    ...+.+++.+|++.||++||+.
T Consensus       226 -----~~~----~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         226 -----RSL----SVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             -----CCC----CHHHHHHHHHHhcCCHHHcCCC
Confidence                 111    1236789999999999999983

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=2.8e-32  Score=285.63  Aligned_cols=243  Identities=17%  Similarity=0.258  Sum_probs=172.1

Q ss_pred             ceecCCceeEEEEEecCC---ceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEE
Q 004232          490 IMGEGSYGKLYKGRLENG---TSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~g---~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      .||+|+||.||+|+..++   ..+++|.+.... ....+.+.+|+.+++.++||||++++|+|.+..        ..++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~--------~~~lv   73 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI--------PYLLV   73 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCC--------ccEEE
Confidence            589999999999975433   345677665433 344678999999999999999999999998653        67999


Q ss_pred             EEccCCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          566 YEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      |||+++|+|.+++++... ....++.....++.+|++||+|||+.   +++||||||+|||++.++.+||+|||++....
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~  150 (268)
T cd05086          74 FEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRY  150 (268)
T ss_pred             EecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccC
Confidence            999999999999976432 23356667788999999999999987   89999999999999999999999999975321


Q ss_pred             ccc--c-----c---ccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccCcc
Q 004232          645 DIN--S-----V---GGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       645 ~~~--~-----~---~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ...  .     .   ....++..       .....+.++|||||||++|||+++ ..|+.....  .+.+..+.. +...
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~--~~~~~~~~~-~~~~  227 (268)
T cd05086         151 KEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD--REVLNHVIK-DQQV  227 (268)
T ss_pred             cchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHh-hccc
Confidence            110  0     0   00111100       001234578999999999999975 566653221  222222211 2223


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .+.+|.+.....    ..+.+++..|| .+|++||+|+||++.|.
T Consensus       228 ~~~~~~~~~~~~----~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         228 KLFKPQLELPYS----ERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             ccCCCccCCCCc----HHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            344444333322    23566788999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2.2e-32  Score=294.18  Aligned_cols=234  Identities=21%  Similarity=0.291  Sum_probs=173.1

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+..|.+++..+ +||||+++++++.+.+        ..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~--------~~~   72 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKD--------RLF   72 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--------eEE
Confidence            36899999999999864 58899999987532   23345677788888866 7999999999988753        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++...
T Consensus        73 lv~E~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~  146 (321)
T cd05591          73 FVMEYVNGGDLMFQIQRSR---KFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEG  146 (321)
T ss_pred             EEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceec
Confidence            9999999999998887543   478889999999999999999997   8999999999999999999999999998643


Q ss_pred             cccccc-----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINSV-----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~~-----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......     +.   ..++......++.++|||||||++|||+||+.||.....  ......+....    ...|..  
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~--~~~~~~i~~~~----~~~p~~--  218 (321)
T cd05591         147 ILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE--DDLFESILHDD----VLYPVW--  218 (321)
T ss_pred             ccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH--HHHHHHHHcCC----CCCCCC--
Confidence            211110     00   111111123456789999999999999999999874332  22222222111    111111  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCC-------CHHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRP-------SFEDILWN  749 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RP-------s~~ev~~~  749 (766)
                       .+    ..+.+++.+|++.||++||       ++.++++.
T Consensus       219 -~~----~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         219 -LS----KEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             -CC----HHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence             11    2367889999999999999       66666543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.8e-32  Score=288.97  Aligned_cols=236  Identities=17%  Similarity=0.221  Sum_probs=172.2

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||+||+++.. +|+.||||++.....   ...+.+..|++++++++||||+++.+++.+..        ..++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--------~~~lv~   72 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKT--------DLCLVM   72 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCC--------eEEEEE
Confidence            699999999999854 789999999865322   23356778999999999999999998887653        689999


Q ss_pred             EccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccc
Q 004232          567 EFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED  645 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~  645 (766)
                      ||+++|+|..++.... ....+++..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++.....
T Consensus        73 e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  149 (280)
T cd05608          73 TIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKD  149 (280)
T ss_pred             eCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCC
Confidence            9999999998875422 234588999999999999999999997   899999999999999999999999999865432


Q ss_pred             cccc----c----cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HH-HhhhhcccCccccccccccC
Q 004232          646 INSV----G----GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EE-LDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       646 ~~~~----~----~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ....    .    +..++......++.++|||||||++|||++|+.||........ .. ...+.. . ...     ...
T Consensus       150 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~-~~~-----~~~  222 (280)
T cd05608         150 GQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILN-D-SVT-----YPD  222 (280)
T ss_pred             CCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcc-c-CCC-----Ccc
Confidence            1111    0    1111111123456689999999999999999999864332111 11 111100 0 000     001


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                          .....+.+++.+|++.||++||     +++|+++
T Consensus       223 ----~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         223 ----KFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             ----cCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence                1123367889999999999999     5566664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.1e-32  Score=301.75  Aligned_cols=247  Identities=18%  Similarity=0.275  Sum_probs=180.0

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ....++|++.+.||+|+||.||+++.. +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+..  
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~--  116 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK--  116 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC--
Confidence            334578999999999999999999864 68899999986432   233456788999999999999999999887653  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++...    .++......++.+++.||+|||+.   +|+||||||+|||+++++.+||
T Consensus       117 ------~~~lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL  183 (370)
T cd05621         117 ------YLYMVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKL  183 (370)
T ss_pred             ------EEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEE
Confidence                  789999999999999998643    267888889999999999999997   8999999999999999999999


Q ss_pred             ecCCCCcccccccc-----cccCCC--CCCcc------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc
Q 004232          635 SDYGLSIVSEDINS-----VGGKQE--DPNSW------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS  701 (766)
Q Consensus       635 ~DFGla~~~~~~~~-----~~~~~~--~~~~~------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~  701 (766)
                      +|||++........     ..++..  .|...      ...+.++||||+||++|||+||+.||.....  ......+..
T Consensus       184 ~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~--~~~~~~i~~  261 (370)
T cd05621         184 ADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSL--VGTYSKIMD  261 (370)
T ss_pred             EecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCH--HHHHHHHHh
Confidence            99999875432211     001110  11100      1245689999999999999999999864322  222222221


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWN  749 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~  749 (766)
                      ......+.+.       ......+.+++.+|+..++.+  ||++.|+++.
T Consensus       262 ~~~~~~~p~~-------~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         262 HKNSLNFPED-------VEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             CCcccCCCCc-------ccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            1111111111       011123567778888755543  8899998775

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=7.7e-33  Score=288.08  Aligned_cols=235  Identities=27%  Similarity=0.413  Sum_probs=172.9

Q ss_pred             CceecCCceeEEEEEecC--------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          489 AIMGEGSYGKLYKGRLEN--------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.||+|+||.||+|....        ...||+|.+........+.+.+|+.+++.++||||+++++++..++        
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~--------   72 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD--------   72 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC--------
Confidence            368999999999997532        3358888887655555678889999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--------E
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--------A  632 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~--------~  632 (766)
                      ..++||||+++|+|..+++....  .+++..+..++.||+.||+|||+.   +|+||||||+||+++.++.        +
T Consensus        73 ~~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~  147 (258)
T cd05078          73 ESIMVQEYVKFGSLDTYLKKNKN--LINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFI  147 (258)
T ss_pred             CcEEEEecCCCCcHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceE
Confidence            57999999999999999976532  478999999999999999999987   8999999999999987765        6


Q ss_pred             EEecCCCCcccccccccccCC--CCCCcc---cCCCCCCCEeehhHHHHHHhcCC-CccccCccchHHHHhhhhcccCcc
Q 004232          633 KLSDYGLSIVSEDINSVGGKQ--EDPNSW---EMTKLEDDVFSFGFMLLESVAGP-SVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~~~~--~~~~~~---~~~~~~~DV~SfGvil~ElltG~-~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |++|||++.............  ..|...   ...+.++|||||||++|||++|. .|+......  .... ...  ...
T Consensus       148 ~l~d~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~--~~~~-~~~--~~~  222 (258)
T cd05078         148 KLSDPGISITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQ--KKLQ-FYE--DRH  222 (258)
T ss_pred             EecccccccccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHH--HHHH-HHH--ccc
Confidence            999999985443221111111  111111   23466899999999999999995 454322111  1111 110  111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      .+.++     .    ...+.+++.+||+.+|++|||+++|+++|
T Consensus       223 ~~~~~-----~----~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         223 QLPAP-----K----WTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             cCCCC-----C----cHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            11111     1    12367899999999999999999999886

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.3e-32  Score=292.61  Aligned_cols=242  Identities=21%  Similarity=0.351  Sum_probs=183.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..|+..+.||+|+||.||+|+. .++..||+|.+........+.+.+|+.++++++||||+++++++.+..        .
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~--------~   91 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--------E   91 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCC--------E
Confidence            4677888999999999999985 468899999987655555677889999999999999999999988653        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.+.    .+++.++..++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        92 ~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~  164 (296)
T cd06654          92 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (296)
T ss_pred             EEEeecccCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccch
Confidence            89999999999999988643    378899999999999999999997   89999999999999999999999999986


Q ss_pred             cccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ........     +   +..++.......+.++|||||||++|||++|+.||.....  ...+...... .......+  
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~--~~~~~~~~~~-~~~~~~~~--  239 (296)
T cd06654         165 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATN-GTPELQNP--  239 (296)
T ss_pred             hccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH--HHhHHHHhcC-CCCCCCCc--
Confidence            43221110     0   0111111123345789999999999999999999864332  1111111110 01111111  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ......+.+++.+||+.+|++||++.||++.
T Consensus       240 -----~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         240 -----EKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             -----cccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence                 1112346788999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=2.8e-32  Score=295.16  Aligned_cols=251  Identities=21%  Similarity=0.410  Sum_probs=187.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      .+|.+.+.||+|+||.||+|+..        .+..||+|.++... ....+++.+|+++++++ +||||++++++|.+.+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            35788899999999999999742        12368999887532 33467889999999999 7999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENT-------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                              ..++++||+++|+|.+++.+..             +...++|..+..++.|++.||+|||+.   +++||||
T Consensus        92 --------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dl  160 (334)
T cd05100          92 --------PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDL  160 (334)
T ss_pred             --------ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ceecccc
Confidence                    6899999999999999987532             123588999999999999999999997   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCcccccccccc----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccC
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINSVG----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARK  688 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~~~----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~  688 (766)
                      ||+||++++++.+||+|||+++.........          +..++......++.++|||||||++|||++ |..|+...
T Consensus       161 kp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  240 (334)
T cd05100         161 AARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  240 (334)
T ss_pred             ccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999986543221110          011111112345568999999999999998 77777532


Q ss_pred             ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          689 GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .  .......+.. ......  +   ..    ....+.+++.+||+.+|.+||+|.|+++.|+.+...
T Consensus       241 ~--~~~~~~~~~~-~~~~~~--~---~~----~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~  296 (334)
T cd05100         241 P--VEELFKLLKE-GHRMDK--P---AN----CTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV  296 (334)
T ss_pred             C--HHHHHHHHHc-CCCCCC--C---CC----CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence            2  1222222211 111111  0   11    123477899999999999999999999999988753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.6e-32  Score=285.06  Aligned_cols=243  Identities=22%  Similarity=0.416  Sum_probs=183.3

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|++.+.||+|+||.||+|.+.++..+|+|.+..... ...++.+|++++++++|||++++++++....        ..
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~   74 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERS--------PI   74 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCC--------ce
Confidence            35777889999999999999987788999998865432 3457889999999999999999999987653        67


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++....  ..+++.....++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        75 ~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~  149 (256)
T cd05112          75 CLVFEFMEHGCLSDYLRAQR--GKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRF  149 (256)
T ss_pred             EEEEEcCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceee
Confidence            99999999999999987543  2478999999999999999999987   899999999999999999999999999864


Q ss_pred             cccccc--c-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINS--V-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~--~-------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ......  .       ....++......++.++|||||||++|||++ |+.|+.....  ......+.. .  .....+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~-~--~~~~~~~  224 (256)
T cd05112         150 VLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN--SEVVETINA-G--FRLYKPR  224 (256)
T ss_pred             cccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH--HHHHHHHhC-C--CCCCCCC
Confidence            322110  0       0111111112345567899999999999998 8888864321  111111111 1  1111222


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .   .    ...+.+++.+||+.+|++||+|.||+++|+
T Consensus       225 ~---~----~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         225 L---A----SQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             C---C----CHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence            1   1    134788999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=1.8e-32  Score=295.79  Aligned_cols=236  Identities=22%  Similarity=0.290  Sum_probs=172.7

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +++.||||.++...   ....+.+.+|+.++.++ +||||+++++++.+.+        ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~--------~~~   72 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTES--------RLF   72 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCC--------EEE
Confidence            46899999999999864 68899999997532   23345678899999998 7999999999987653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~~g~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~  146 (329)
T cd05588          73 FVIEFVSGGDLMFHMQRQR---KLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  146 (329)
T ss_pred             EEEeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCcccccc
Confidence            9999999999998886543   488999999999999999999997   8999999999999999999999999998642


Q ss_pred             cccc-c---c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc------chHHHHhhhhcccCccccc
Q 004232          644 EDIN-S---V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ------FLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       644 ~~~~-~---~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~------~~~~~~~~~~~~~~~~~~~  709 (766)
                      .... .   . +   +..++......++.++|||||||++|||+||+.||+..+.      ............. ...+.
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p  225 (329)
T cd05588         147 IRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEK-QIRIP  225 (329)
T ss_pred             ccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcC-CCCCC
Confidence            1110 0   0 0   0111111123456689999999999999999999863211      1111111111111 11111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCC------HHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPS------FEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs------~~ev~~  748 (766)
                           ...+    ..+.+++.+|++.||.+||+      +.+|++
T Consensus       226 -----~~~~----~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         226 -----RSLS----VKASSVLKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             -----CCCC----HHHHHHHHHHhccCHHHcCCCCCCCCHHHHhc
Confidence                 1111    23678999999999999997      566653

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.4e-32  Score=282.96  Aligned_cols=242  Identities=21%  Similarity=0.300  Sum_probs=181.8

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|+..+.||+|+||.||+|.. .++..||+|.+....     ....+.+.+|++++++++||||++++|++.+.+    
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----   77 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE----   77 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC----
Confidence            4688899999999999999985 468999999886432     223467889999999999999999999988753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++|+||+++++|.+++.+..   .+++.....++.+++.|++|||+.   +++||||||+||++++++.+||+|
T Consensus        78 ----~~~~v~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~d  147 (263)
T cd06625          78 ----TLSIFMEYMPGGSVKDQLKAYG---ALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGD  147 (263)
T ss_pred             ----eEEEEEEECCCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEee
Confidence                7899999999999999887543   378888899999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc-----------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV-----------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~-----------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........           ....++.......+.++|||||||++|||++|+.|+......  ............
T Consensus       148 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~  225 (263)
T cd06625         148 FGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM--AAIFKIATQPTN  225 (263)
T ss_pred             cccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchH--HHHHHHhccCCC
Confidence            9998643221110           011111111233556899999999999999999998643221  111111111111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+     ...    ....+.+++.+||..+|.+||++.|+++.
T Consensus       226 ~~~-----~~~----~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         226 PQL-----PSH----VSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             CCC-----Ccc----CCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            111     111    12236788999999999999999999764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=2e-32  Score=288.13  Aligned_cols=238  Identities=19%  Similarity=0.225  Sum_probs=173.2

Q ss_pred             eecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||+++. .+|+.+|+|++.....   ...+.+..|++++++++||||+++++++.+..        ..++||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~--------~~~lv~   72 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKT--------HLCLVM   72 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCC--------eEEEEE
Confidence            69999999999985 4689999999864321   22345567999999999999999998887653        689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++.... ...+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++......
T Consensus        73 e~~~g~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~  148 (277)
T cd05607          73 SLMNGGDLKYHIYNVG-ERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG  148 (277)
T ss_pred             ecCCCCCHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCC
Confidence            9999999998886543 23488999999999999999999997   8999999999999999999999999998654322


Q ss_pred             ccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHH-hhhhcccCccccccccccCCC
Q 004232          647 NSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEEL-DSLNSQEGRQRLVDPVVMATS  717 (766)
Q Consensus       647 ~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~-~~~~~~~~~~~~~d~~~~~~~  717 (766)
                      ...       ....++......++.++|||||||++|||++|+.|+...... ....+ .....    ..+..+  ....
T Consensus       149 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~  222 (277)
T cd05607         149 KTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLE----DEVKFE--HQNF  222 (277)
T ss_pred             ceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhc----cccccc--cccC
Confidence            111       011111111234567899999999999999999998632211 11111 11110    010000  0011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          718 SLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       718 ~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                          ...+.+++.+|++.||.+||++.|+++..
T Consensus       223 ----~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         223 ----TEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             ----CHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence                12367899999999999999998776443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=291.09  Aligned_cols=240  Identities=19%  Similarity=0.335  Sum_probs=182.2

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .|...+.||+|+||.||||.. .+++.||+|.+.-.. ....+++++|+.++++++|+||.+++|.+..+.        .
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~--------~   85 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGT--------K   85 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecc--------c
Confidence            355568999999999999984 578999999997653 345788999999999999999999999888763        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      ++++||||.+|++.+.+....   .++.....-+.+++..|+.|+|.+   +.+|||||+.|||+..+|.+|++|||++.
T Consensus        86 LwiiMey~~gGsv~~lL~~~~---~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~  159 (467)
T KOG0201|consen   86 LWIIMEYCGGGSVLDLLKSGN---ILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAG  159 (467)
T ss_pred             HHHHHHHhcCcchhhhhccCC---CCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceee
Confidence            899999999999999886443   346666777888999999999998   78999999999999999999999999996


Q ss_pred             ccccccccccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........+.-..++|        ..+..|+||||+|++.+||++|.+|+.....     ...+.   .+.+-.-|.+
T Consensus       160 ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP-----mrvlf---lIpk~~PP~L  231 (467)
T KOG0201|consen  160 QLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP-----MRVLF---LIPKSAPPRL  231 (467)
T ss_pred             eeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc-----ceEEE---eccCCCCCcc
Confidence            654332221111111223        3466799999999999999999999864322     00000   0111111222


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..    ..-..+.+++..|+.+||+.||++.++++.
T Consensus       232 ~~----~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  232 DG----DFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             cc----ccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence            22    122337788999999999999999998864

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.9e-32  Score=302.07  Aligned_cols=191  Identities=21%  Similarity=0.289  Sum_probs=152.6

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .|+..+.||+|+||.||+|+. .+++.||+|++....   ....+.+.+|+.++++++|||||++++++.+.+       
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~-------   74 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKD-------   74 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCC-------
Confidence            478889999999999999985 468899999986543   234567889999999999999999999988753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.+..   .++......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        75 -~~~lv~E~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGl  147 (382)
T cd05625          75 -NLYFVMDYIPGGDMMSLLIRMG---IFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGL  147 (382)
T ss_pred             -EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCC
Confidence             7899999999999999987543   367788888999999999999997   899999999999999999999999999


Q ss_pred             Cccccccc---------------------------------------------------c-cc---cCCCCCCcccCCCC
Q 004232          640 SIVSEDIN---------------------------------------------------S-VG---GKQEDPNSWEMTKL  664 (766)
Q Consensus       640 a~~~~~~~---------------------------------------------------~-~~---~~~~~~~~~~~~~~  664 (766)
                      +.......                                                   . .+   +..++......++.
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  227 (382)
T cd05625         148 CTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQ  227 (382)
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCC
Confidence            74211000                                                   0 00   00011111123456


Q ss_pred             CCCEeehhHHHHHHhcCCCccccC
Q 004232          665 EDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       665 ~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      ++|||||||++|||+||+.||...
T Consensus       228 ~~DiwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         228 LCDWWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             eeeEEechHHHHHHHhCCCCCCCC
Confidence            789999999999999999999743

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=2.2e-32  Score=288.15  Aligned_cols=239  Identities=19%  Similarity=0.290  Sum_probs=177.3

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +|+..+.||+|+||.||+|+. .+++.||+|.+... .....+++.+|++++++++||||++++++|...+        .
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------~   73 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVEN--------R   73 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECC--------E
Confidence            577788999999999999985 57899999998654 2344567889999999999999999999998753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|..+.       .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        74 ~~lv~e~~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~  143 (279)
T cd06619          74 ISICTEFMDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVST  143 (279)
T ss_pred             EEEEEecCCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcce
Confidence            79999999999997642       256788889999999999999997   89999999999999999999999999986


Q ss_pred             cccccccc------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-----hHHHHhhhhcccCcccccc
Q 004232          642 VSEDINSV------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-----LQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       642 ~~~~~~~~------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~d  710 (766)
                      ........      ....++.......+.++|||||||++|||++|+.|+......     .......+.. ..     .
T Consensus       144 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~-----~  217 (279)
T cd06619         144 QLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVD-ED-----P  217 (279)
T ss_pred             ecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhc-cC-----C
Confidence            54322111      011111111234566899999999999999999998632111     0111111110 00     0


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +.....   .....+.+++.+|++.+|.+||+++|+++.
T Consensus       218 ~~~~~~---~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         218 PVLPVG---QFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             CCCCCC---cCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            111000   011236788999999999999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=8.6e-33  Score=309.17  Aligned_cols=261  Identities=15%  Similarity=0.180  Sum_probs=175.8

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ...+|++.++||+|+||.||+|+. .+++.||||++....    ....+|+.+|++++|||||++++++....-......
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            346799999999999999999986 468999999885432    234579999999999999999998754321000011


Q ss_pred             ceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecC
Q 004232          560 NKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDY  637 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DF  637 (766)
                      ..+++||||+++ ++.+++... .....+++.....++.|++.||+|||+.   +|+||||||+|||++.++ .+||+||
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DF  215 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDF  215 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeecc
Confidence            246799999996 676665431 1234588899999999999999999997   899999999999999654 7999999


Q ss_pred             CCCccccccccc---ccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccC----
Q 004232          638 GLSIVSEDINSV---GGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEG----  704 (766)
Q Consensus       638 Gla~~~~~~~~~---~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~----  704 (766)
                      |+++........   .++.  ..|.   ....++.++|||||||++|||+||..||...... ....+........    
T Consensus       216 Gla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~  295 (440)
T PTZ00036        216 GSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQL  295 (440)
T ss_pred             ccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence            999754321111   1110  1111   1124567899999999999999999998643211 1111111000000    


Q ss_pred             ------ccccccccccC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 ------RQRLVDPVVMA-----TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ------~~~~~d~~~~~-----~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                            ...+.-|....     ..+......+.+++.+||+.||.+|||+.|+++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        296 KEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             HHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence                  00000000000     0000112347899999999999999999999855

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.9e-32  Score=284.00  Aligned_cols=246  Identities=22%  Similarity=0.426  Sum_probs=187.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|.+.+.||+|+||.||+|...++..||||.+.... ...+++.+|+.++++++||||+++++++.+..        .
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   75 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE--------P   75 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCC--------c
Confidence            46788899999999999999998878889999987543 23467899999999999999999999887643        5


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++++|.+++.+.. ...+++..+..++.+++.|++|||+.   +++||||||+||++++++.+|++|||++.
T Consensus        76 ~~~v~e~~~~~~L~~~i~~~~-~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          76 IYIVTEYMSKGSLLDFLKSGE-GKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             eEEEEeccCCCCHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccce
Confidence            799999999999999997643 24589999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccc---------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSV---------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~---------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ........         .+..++.......+.++|||||||++||++| |+.|+.....  ......+...   .....+
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--~~~~~~~~~~---~~~~~~  226 (261)
T cd05034         152 LIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN--REVLEQVERG---YRMPRP  226 (261)
T ss_pred             eccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcC---CCCCCC
Confidence            54321100         0111111112345668999999999999999 8988864322  1112222111   011111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      .   ..    ...+.+++.+|++.+|++||+++++.+.|+.
T Consensus       227 ~---~~----~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         227 P---NC----PEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             C---CC----CHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            1   11    2347789999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1e-32  Score=303.61  Aligned_cols=243  Identities=19%  Similarity=0.222  Sum_probs=174.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+. .+++.||||++....   ....+.+.+|++++++++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~------   74 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKD------   74 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCC------
Confidence            3688899999999999999985 468999999986532   223566889999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+++||||+++|+|.+++.+..   .++......++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~E~~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG  146 (376)
T cd05598          75 --NLYFVMDYIPGGDMMSLLIRLG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFG  146 (376)
T ss_pred             --EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCC
Confidence              7899999999999999997643   367778888899999999999997   89999999999999999999999999


Q ss_pred             CCccccccc-----------------------------------------------c-ccc---CCCCCCcccCCCCCCC
Q 004232          639 LSIVSEDIN-----------------------------------------------S-VGG---KQEDPNSWEMTKLEDD  667 (766)
Q Consensus       639 la~~~~~~~-----------------------------------------------~-~~~---~~~~~~~~~~~~~~~D  667 (766)
                      ++.......                                               . .+.   ..++......++.++|
T Consensus       147 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  226 (376)
T cd05598         147 LCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCD  226 (376)
T ss_pred             CCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCccee
Confidence            974211000                                               0 000   0000011123456889


Q ss_pred             EeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC---CHH
Q 004232          668 VFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP---SFE  744 (766)
Q Consensus       668 V~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP---s~~  744 (766)
                      ||||||++|||+||+.||......  .....+....  .....+.. ...+    ..+.+++.+|+ .+|.+||   ++.
T Consensus       227 iwSlGvilyell~G~~Pf~~~~~~--~~~~~i~~~~--~~~~~~~~-~~~s----~~~~~li~~l~-~~p~~R~~~~t~~  296 (376)
T cd05598         227 WWSVGVILYEMLVGQPPFLADTPA--ETQLKVINWE--TTLHIPSQ-AKLS----REASDLILRLC-CGAEDRLGKNGAD  296 (376)
T ss_pred             eeeccceeeehhhCCCCCCCCCHH--HHHHHHhccC--ccccCCCC-CCCC----HHHHHHHHHHh-cCHhhcCCCCCHH
Confidence            999999999999999999743321  1111111101  11111110 1111    22456666665 4999999   888


Q ss_pred             HHHHH
Q 004232          745 DILWN  749 (766)
Q Consensus       745 ev~~~  749 (766)
                      |+++.
T Consensus       297 ell~h  301 (376)
T cd05598         297 EIKAH  301 (376)
T ss_pred             HHhCC
Confidence            88754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.8e-32  Score=286.53  Aligned_cols=247  Identities=19%  Similarity=0.298  Sum_probs=182.9

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+++.. +|..||+|.+... .....+.+.+|++++++++||||+++++++...+        
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--------   72 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEG--------   72 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCC--------
Confidence            35778899999999999999865 7899999988653 2334567889999999999999999999887753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++++|..++........+++.....++.+++.||.|||+.+  +|+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~  150 (286)
T cd06622          73 AVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVS  150 (286)
T ss_pred             eEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeCCCCHHHEEECCCCCEEEeecCCc
Confidence            78999999999999998876433345899999999999999999999642  7999999999999999999999999998


Q ss_pred             ccccccccc------ccCCCCCC------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccc
Q 004232          641 IVSEDINSV------GGKQEDPN------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQR  707 (766)
Q Consensus       641 ~~~~~~~~~------~~~~~~~~------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~  707 (766)
                      .........      ....++..      .....+.++|||||||++|||+||+.||...... .......+.. .....
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~  229 (286)
T cd06622         151 GNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVD-GDPPT  229 (286)
T ss_pred             ccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhh-cCCCC
Confidence            643221110      01111111      0112356889999999999999999998643211 1111111111 00111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ...    .....+.+++.+||+.+|++||++++++..
T Consensus       230 -----~~~----~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         230 -----LPS----GYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             -----CCc----ccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence                 111    122346788999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.7e-32  Score=302.06  Aligned_cols=184  Identities=18%  Similarity=0.257  Sum_probs=148.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..+|++.+.||+|+||.||+++. .+++.||+|...      .+.+.+|++++++++|||||++++++....        
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--------  156 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNK--------  156 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECC--------
Confidence            35799999999999999999985 468999999653      235678999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+. ++|..++....   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus       157 ~~~lv~e~~~-~~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a  229 (391)
T PHA03212        157 FTCLILPRYK-TDLYCYLAAKR---NIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAA  229 (391)
T ss_pred             eeEEEEecCC-CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCcc
Confidence            6899999986 68888886542   478999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc------ccc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccc
Q 004232          641 IVSEDINS------VGG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       641 ~~~~~~~~------~~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~  686 (766)
                      +.......      .++   ..++......++.++|||||||++|||+||+.|+.
T Consensus       230 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~  284 (391)
T PHA03212        230 CFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF  284 (391)
T ss_pred             cccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            64322110      011   11111122345678999999999999999987754

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=3.9e-32  Score=283.81  Aligned_cols=241  Identities=21%  Similarity=0.350  Sum_probs=179.7

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCCh------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +|...+.||+|+||.||+|...+|+.+|||.++...      ....+.+.+|++++++++|+||++++++|.+.+     
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-----   75 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN-----   75 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC-----
Confidence            467788999999999999998889999999886432      223456889999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++|+||+++|+|.+++.+..   .+++.....++.+++.|++|||+.   +|+|+||||+||++++++.+||+||
T Consensus        76 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~df  146 (265)
T cd06631          76 ---TISIFMEFVPGGSISSILNRFG---PLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDF  146 (265)
T ss_pred             ---eEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccc
Confidence               6899999999999999997643   378888889999999999999987   7999999999999999999999999


Q ss_pred             CCCcccccccc----------c----ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          638 GLSIVSEDINS----------V----GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       638 Gla~~~~~~~~----------~----~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      |++........          .    ...+++.......+.++|||||||++|||+||+.|+......  .....+....
T Consensus       147 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~--~~~~~~~~~~  224 (265)
T cd06631         147 GCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRL--AAMFYIGAHR  224 (265)
T ss_pred             hhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChH--HHHHHhhhcc
Confidence            99864321100          0    001111111233456799999999999999999998643211  1111111110


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..    .+.......    ..+.+++.+||+.+|.+||++.||++
T Consensus       225 ~~----~~~~~~~~~----~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         225 GL----MPRLPDSFS----AAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CC----CCCCCCCCC----HHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00    111111111    23678899999999999999999874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.3e-32  Score=295.50  Aligned_cols=241  Identities=23%  Similarity=0.308  Sum_probs=176.2

Q ss_pred             CCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      +|++.+.||+|+||.||+++.    .+++.||+|++....    ....+.+..|+.+++++ +||||+++++++.+.+  
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--   78 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEA--   78 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCC--
Confidence            477889999999999999874    368899999986432    22345678899999999 4999999998887653  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +|+||||||+|||++.++.+||
T Consensus        79 ------~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl  146 (332)
T cd05614          79 ------KLHLILDYVSGGEMFTHLYQRD---NFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVL  146 (332)
T ss_pred             ------EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEE
Confidence                  6899999999999999987543   478889999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCcccccccc-----cccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCcc-chHHHHhhhhccc
Q 004232          635 SDYGLSIVSEDINS-----VGGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-FLQEELDSLNSQE  703 (766)
Q Consensus       635 ~DFGla~~~~~~~~-----~~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-~~~~~~~~~~~~~  703 (766)
                      +|||+++.......     ..++.  ..|..   ....+.++|||||||++|||+||+.||..... .....+...... 
T Consensus       147 ~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~-  225 (332)
T cd05614         147 TDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILK-  225 (332)
T ss_pred             eeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhc-
Confidence            99999865321111     00111  01111   12245689999999999999999999863221 111111111000 


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                           .++......+    ..+.+++.+|++.||++||     ++.|+++
T Consensus       226 -----~~~~~~~~~~----~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         226 -----CDPPFPSFIG----PEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             -----CCCCCCCCCC----HHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence                 1111111111    2367889999999999999     6667764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.8e-32  Score=281.45  Aligned_cols=238  Identities=23%  Similarity=0.422  Sum_probs=180.6

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEE
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      ++||+|+||.||++...+++.||+|.+..... ...+.+.+|++++++++||||+++++++.+..        ..++|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~~~v~e   72 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ--------PIYIVME   72 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC--------CeEEEEE
Confidence            46899999999999977799999998875433 35678899999999999999999999987653        6899999


Q ss_pred             ccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccc
Q 004232          568 FMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN  647 (766)
Q Consensus       568 y~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~  647 (766)
                      |+++++|.+++.+..  ..+++.....++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++.......
T Consensus        73 ~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~  147 (251)
T cd05041          73 LVPGGSLLTFLRKKK--NRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGI  147 (251)
T ss_pred             cCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCc
Confidence            999999999987543  2478889999999999999999987   89999999999999999999999999986543211


Q ss_pred             cc----------ccCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          648 SV----------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       648 ~~----------~~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ..          .+..++......++.++|||||||++|||+| |..|+......  .....+.. .  .....+     
T Consensus       148 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~--~~~~~~~~-~--~~~~~~-----  217 (251)
T cd05041         148 YTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ--QTRERIES-G--YRMPAP-----  217 (251)
T ss_pred             ceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH--HHHHHHhc-C--CCCCCC-----
Confidence            10          0111111122345678999999999999999 77777533221  11111111 1  011111     


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                        ......+.+++.+|++.+|++||++.||++.|+
T Consensus       218 --~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         218 --QLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             --ccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence              111234788999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=3.8e-32  Score=286.77  Aligned_cols=242  Identities=20%  Similarity=0.302  Sum_probs=180.6

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      |++.+.||+|+||.||+|+.. ++..+|+|.+........+.+.+|+++++.++||||++++++|...+        ..+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--------~~~   78 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--------NLW   78 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCC--------EEE
Confidence            455678999999999999865 57889999987665556678899999999999999999999988753        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||+++|+|..++.+..  ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||++...
T Consensus        79 ~v~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  153 (282)
T cd06643          79 ILIEFCAGGAVDAVMLELE--RPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN  153 (282)
T ss_pred             EEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEccccccccc
Confidence            9999999999998876432  3589999999999999999999997   8999999999999999999999999998543


Q ss_pred             cccccc-----c---cCCCCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          644 EDINSV-----G---GKQEDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       644 ~~~~~~-----~---~~~~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ......     +   +..++..     ....++.++|||||||++|||++|+.|+.....  ......+... ....+..
T Consensus       154 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~-~~~~~~~  230 (282)
T cd06643         154 TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKS-EPPTLAQ  230 (282)
T ss_pred             cccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH--HHHHHHHhhc-CCCCCCC
Confidence            221110     0   0111110     112345689999999999999999999864221  1111111111 0111111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +.   ..    ...+.+++.+||+.+|.+||++.+|++.
T Consensus       231 ~~---~~----~~~~~~li~~~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         231 PS---RW----SSEFKDFLKKCLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             cc---cc----CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11   11    1236789999999999999999998754

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.9e-32  Score=295.13  Aligned_cols=233  Identities=19%  Similarity=0.291  Sum_probs=172.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCC-CcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHP-HLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hp-niv~l~g~~~~~~~~~~~~  558 (766)
                      +|++.+.||+|+||.||+|+.. +++.||||++....   ....+.+..|+.+++.++|+ +|+++++++.+.       
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-------   73 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-------   73 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcC-------
Confidence            4778899999999999999864 57899999987532   23456678899999999765 577888777664       


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       +..|+||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~E~~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg  146 (324)
T cd05587          74 -DRLYFVMEYVNGGDLMYHIQQVG---KFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFG  146 (324)
T ss_pred             -CEEEEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecC
Confidence             36899999999999999887543   378899999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccc--------ccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDIN--------SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~--------~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +++......        +..+..++......++.++|||||||++|||+||+.||.....  ......+...  ...+  
T Consensus       147 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~~~~i~~~--~~~~--  220 (324)
T cd05587         147 MCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE--DELFQSIMEH--NVSY--  220 (324)
T ss_pred             cceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHcC--CCCC--
Confidence            985421110        0011112212223456789999999999999999999864322  1212222111  0111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      |   ...+    ..+.+++.+|++.||.+||+.
T Consensus       221 ~---~~~~----~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         221 P---KSLS----KEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             C---CCCC----HHHHHHHHHHhhcCHHHcCCC
Confidence            1   1111    236788999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.3e-32  Score=292.04  Aligned_cols=231  Identities=22%  Similarity=0.306  Sum_probs=168.4

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHh-CCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAK-LRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~-l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+..|..++.. .+||||+++++++...+        ..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~--------~~~   72 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKE--------HLF   72 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCC--------EEE
Confidence            36899999999999864 68899999987542   2234455566667665 48999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++....   .++......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~gg~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~  146 (316)
T cd05592          73 FVMEYLNGGDLMFHIQSSG---RFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeEC
Confidence            9999999999999887543   378888889999999999999997   8999999999999999999999999998643


Q ss_pred             cccccc-----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINSV-----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~~-----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......     +.   ..++......++.++|||||||++|||++|+.||.....  ......+...  .     +....
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~--~-----~~~~~  217 (316)
T cd05592         147 MNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE--DELFDSILND--R-----PHFPR  217 (316)
T ss_pred             CCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcC--C-----CCCCC
Confidence            211110     11   111111123456789999999999999999999864332  1222222111  0     10111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDI  746 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev  746 (766)
                      ..+    ..+.+++.+||+.||++||++.+.
T Consensus       218 ~~~----~~~~~ll~~~l~~~P~~R~~~~~~  244 (316)
T cd05592         218 WIS----KEAKDCLSKLFERDPTKRLGVDGD  244 (316)
T ss_pred             CCC----HHHHHHHHHHccCCHHHcCCChHH
Confidence            111    235688999999999999998643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=2.4e-32  Score=289.67  Aligned_cols=259  Identities=23%  Similarity=0.330  Sum_probs=189.5

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeec
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCID  550 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~  550 (766)
                      ++++++..++++|++.+.||+|+||.||++.. .+++.+|+|.+..... ....+.+|+.+++++ +|||++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~-~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD-VDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccccc-HHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            45566677889999999999999999999986 4688999999865422 245678899999999 89999999999876


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      .+..   .....++||||+++|+|.++++... ....+++.....++.+++.||+|||+.   +++||||||+||+++++
T Consensus        91 ~~~~---~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~  164 (291)
T cd06639          91 ADKL---VGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTE  164 (291)
T ss_pred             cccc---CCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCC
Confidence            4311   1135899999999999999886421 234588999999999999999999987   89999999999999999


Q ss_pred             CcEEEecCCCCccccccccc-----ccC-CCCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH
Q 004232          630 RIAKLSDYGLSIVSEDINSV-----GGK-QEDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL  696 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~-----~~~-~~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~  696 (766)
                      +.+||+|||++.........     +.. ...|...       ...+.++|||||||++|||++|+.|+.....  ....
T Consensus       165 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~--~~~~  242 (291)
T cd06639         165 GGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP--VKTL  242 (291)
T ss_pred             CCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH--HHHH
Confidence            99999999998654321110     000 0011111       1245689999999999999999999864321  1111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+.. .....+.++       .+....+.+++.+||+.+|++||++.|+++
T Consensus       243 ~~~~~-~~~~~~~~~-------~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         243 FKIPR-NPPPTLLHP-------EKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             HHHhc-CCCCCCCcc-------cccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            11111 111111111       111234788999999999999999999975

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2e-32  Score=294.85  Aligned_cols=233  Identities=18%  Similarity=0.291  Sum_probs=172.8

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +|++.+.||+|+||.||+|+.. +++.||||.+....   ....+.+..|..++..+ +||+|+++++++.+.+      
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~------   74 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMD------   74 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCC------
Confidence            5778899999999999999864 67899999987532   22344566788888777 5889999998887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|..++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||
T Consensus        75 --~~~lv~E~~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG  146 (323)
T cd05616          75 --RLYFVMEYVNGGDLMYQIQQVG---RFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFG  146 (323)
T ss_pred             --EEEEEEcCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCC
Confidence              7899999999999999887543   378899999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccc-c---c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDIN-S---V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~-~---~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +++...... .   . +   +..++......++.++|||||||++|||+||+.||.....  ......+....  ..+  
T Consensus       147 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~--~~~~~~i~~~~--~~~--  220 (323)
T cd05616         147 MCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEHN--VAY--  220 (323)
T ss_pred             CceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCC--
Confidence            986432111 0   0 0   1111111223456789999999999999999999874332  11122221111  011  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      |   ...    ...+.+++.+|++.||.+|++.
T Consensus       221 p---~~~----s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         221 P---KSM----SKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             C---CcC----CHHHHHHHHHHcccCHHhcCCC
Confidence            1   111    1236789999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.7e-32  Score=288.59  Aligned_cols=238  Identities=19%  Similarity=0.337  Sum_probs=178.9

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      |+..+.||+|+||.||+|.. .++..||+|.++... ....+.+.+|++++++++||||+++++++....        ..
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~   77 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGT--------KL   77 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCC--------ce
Confidence            44567899999999999985 468899999986433 344567899999999999999999999987653        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++...    .+++.....++.++++|++|||+.   +++|+||+|+||++++++.+|++|||++..
T Consensus        78 ~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          78 WIIMEYLGGGSALDLLKPG----PLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEccCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEcccccccc
Confidence            9999999999999988642    378899999999999999999987   899999999999999999999999999865


Q ss_pred             ccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          643 SEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       643 ~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      .......     +   ...++......++.++|||||||++|||+||+.|+.......  ....+. ..     ..+...
T Consensus       151 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~~~~-~~-----~~~~~~  222 (277)
T cd06642         151 LTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR--VLFLIP-KN-----SPPTLE  222 (277)
T ss_pred             ccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh--HHhhhh-cC-----CCCCCC
Confidence            4322110     0   011111112334568999999999999999999975322111  111110 00     011111


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ......+.+++.+||+.+|++||+|.+|++.
T Consensus       223 ----~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         223 ----GQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             ----cccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                1122347789999999999999999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2.2e-32  Score=293.33  Aligned_cols=232  Identities=22%  Similarity=0.312  Sum_probs=170.7

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHh-CCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAK-LRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~-l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||+||+|+.. +++.||||.++...   ....+.+..|..++.. .+||||+++++++.+.+        ..+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~--------~~~   72 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKE--------NLF   72 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCC--------EEE
Confidence            36899999999999864 57899999987542   2234556677778876 48999999999988753        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~ey~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05619          73 FVMEYLNGGDLMFHIQSCH---KFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceEC
Confidence            9999999999999987542   478899999999999999999997   8999999999999999999999999998642


Q ss_pred             cccc----cc-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDIN----SV-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~----~~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ....    .. +   +..++......++.++|||||||++|||++|+.||.....  ......+....       +....
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~~i~~~~-------~~~~~  217 (316)
T cd05619         147 MLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--EELFQSIRMDN-------PCYPR  217 (316)
T ss_pred             CCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC-------CCCCc
Confidence            1110    00 1   1111111123456789999999999999999999864322  11122111110       11111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHH-HHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFE-DIL  747 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~-ev~  747 (766)
                      ..+    ..+.+++.+|++.||++||++. ++.
T Consensus       218 ~~~----~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         218 WLT----REAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             cCC----HHHHHHHHHHhccCHhhcCCChHHHH
Confidence            111    2367889999999999999997 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.9e-32  Score=294.48  Aligned_cols=228  Identities=21%  Similarity=0.313  Sum_probs=169.5

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +++.||||+++...   ....+.+..|+.++..+ +||||+++++++.+.+        ..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~--------~~~   72 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPD--------RLF   72 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCC--------EEE
Confidence            36899999999999864 68899999986532   23345677788888876 6999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        73 iv~Ey~~~g~L~~~i~~~~---~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~  146 (320)
T cd05590          73 FVMEFVNGGDLMFHIQKSR---RFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG  146 (320)
T ss_pred             EEEcCCCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeec
Confidence            9999999999999887543   378889999999999999999997   8999999999999999999999999998643


Q ss_pred             ccccc----c-cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINS----V-GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~----~-~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .....    . +.   ..++......++.++|||||||++|||++|+.||.....  ......+...    ....|.   
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~--~~~~~~i~~~----~~~~~~---  217 (320)
T cd05590         147 IFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE--DDLFEAILND----EVVYPT---  217 (320)
T ss_pred             CcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHHHHHhcC----CCCCCC---
Confidence            11110    0 00   111111123456689999999999999999999864332  1112222111    111111   


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      ..+    ..+.+++.+|++.||.+||+.
T Consensus       218 ~~~----~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         218 WLS----QDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CCC----HHHHHHHHHHcccCHHHCCCC
Confidence            111    236788999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.2e-32  Score=286.24  Aligned_cols=241  Identities=23%  Similarity=0.414  Sum_probs=177.6

Q ss_pred             CceecCCceeEEEEEecC-------CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          489 AIMGEGSYGKLYKGRLEN-------GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.||+|+||.||+|+..+       ++.+|||.+.... ......+.+|++++++++||||++++|+|.+.+        
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   72 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE--------   72 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC--------
Confidence            468999999999998542       2579999886543 234567889999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCC----CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-----c
Q 004232          561 KVFLVYEFMSNGNFRTHISENT----PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-----I  631 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~----~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-----~  631 (766)
                      ..++||||+++|+|.+++....    ....++|.+++.++.+++.|++|||+.   +++||||||+||+++.+.     .
T Consensus        73 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~  149 (269)
T cd05044          73 PQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRV  149 (269)
T ss_pred             CeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcc
Confidence            5799999999999999997532    123478999999999999999999986   799999999999999877     8


Q ss_pred             EEEecCCCCccccccccc--c--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhh
Q 004232          632 AKLSDYGLSIVSEDINSV--G--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~--~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~  700 (766)
                      +|++|||+++........  .        ...++.......+.++|||||||++|||+| |+.|+.....  .+....+.
T Consensus       150 ~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~~~~~~~  227 (269)
T cd05044         150 VKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QEVLQHVT  227 (269)
T ss_pred             eEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HHHHHHHh
Confidence            999999998643221100  0        011111112345678999999999999998 9988864322  11111111


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      . ..  .+..+       ......+.+++.+||+.+|.+||++++|.+.|++
T Consensus       228 ~-~~--~~~~~-------~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         228 A-GG--RLQKP-------ENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             c-CC--ccCCc-------ccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            1 11  11001       1112346789999999999999999999999873

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.7e-32  Score=283.16  Aligned_cols=242  Identities=24%  Similarity=0.404  Sum_probs=182.0

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|++.+.||+|+||.||+|.. +++.||+|.++...  ..+.+.+|+.++++++|||++++++++.+.         ..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~---------~~   73 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHN---------GL   73 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC---------Cc
Confidence            4577889999999999999975 57889999986542  246788999999999999999999988653         36


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++.... ...+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        74 ~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          74 YIVMELMSKGNLVNFLRTRG-RALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARV  149 (254)
T ss_pred             EEEEECCCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCcccee
Confidence            89999999999999987543 23478999999999999999999986   899999999999999999999999999865


Q ss_pred             cccccccc-----cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          643 SEDINSVG-----GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       643 ~~~~~~~~-----~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ........     +..++.......+.++|||||||++|||++ |+.|+.....  ......+ ......   ++  ...
T Consensus       150 ~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--~~~~~~~-~~~~~~---~~--~~~  221 (254)
T cd05083         150 GSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL--KEVKECV-EKGYRM---EP--PEG  221 (254)
T ss_pred             ccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH--HHHHHHH-hCCCCC---CC--CCc
Confidence            43211110     111111112345568899999999999998 8888764322  1111111 111111   11  011


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                          ....+.+++.+||+.+|.+||++++|+..|++
T Consensus       222 ----~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         222 ----CPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             ----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence                12346789999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=4.3e-32  Score=285.11  Aligned_cols=247  Identities=21%  Similarity=0.352  Sum_probs=183.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|+....||+|+||.||+|+..      +...||+|.+...... ..+++.+|++++++++||||+++++++.+.+   
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---   81 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE---   81 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC---
Confidence            46778889999999999999853      3567999988765443 4678999999999999999999999987653   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCC------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPG------KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                           ..++||||+++|+|.+++......      ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.+
T Consensus        82 -----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~  153 (275)
T cd05046          82 -----PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQ  153 (275)
T ss_pred             -----cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCC
Confidence                 579999999999999998754421      1589999999999999999999987   89999999999999999


Q ss_pred             CcEEEecCCCCcccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhh
Q 004232          630 RIAKLSDYGLSIVSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~  699 (766)
                      +.+|++|||+++.........         +..++.........++|||||||++|||++ |..|+.....  ...+...
T Consensus       154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~--~~~~~~~  231 (275)
T cd05046         154 REVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD--EEVLNRL  231 (275)
T ss_pred             CcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch--HHHHHHH
Confidence            999999999986432111000         111111112334567899999999999999 6777743211  1111111


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .. . ......+   ...    ...+.+++.+||+.+|.+||++.|++++|.
T Consensus       232 ~~-~-~~~~~~~---~~~----~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         232 QA-G-KLELPVP---EGC----PSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             Hc-C-CcCCCCC---CCC----CHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            11 1 0011111   011    124778999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=6.1e-32  Score=281.05  Aligned_cols=240  Identities=26%  Similarity=0.451  Sum_probs=182.0

Q ss_pred             CceecCCceeEEEEEecC----CceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|....    +..||+|.++..... ..+.+.+|++.+++++|+||+++++++.+.        ...+
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~~~~   72 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEE--------EPLY   72 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCC--------CceE
Confidence            468999999999998653    788999999765433 367899999999999999999999998874        3689


Q ss_pred             EEEEccCCCChhhhhhcCCC------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          564 LVYEFMSNGNFRTHISENTP------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      +||||+++|+|.+++.+...      ...+++..+..++.+++.|++|||+.   +++||||||+||++++++.+|++||
T Consensus        73 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~df  149 (262)
T cd00192          73 LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDF  149 (262)
T ss_pred             EEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccc
Confidence            99999999999999976521      24589999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc---cc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          638 GLSIVSEDINS---VG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       638 Gla~~~~~~~~---~~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |.+........   ..       ...++.......+.++||||+||++|||++ |..|+.....  ......+.. ..  
T Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~-~~--  224 (262)
T cd00192         150 GLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN--EEVLEYLRK-GY--  224 (262)
T ss_pred             ccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHc-CC--
Confidence            99865533210   00       011111111245668999999999999999 5888864321  111222211 11  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      ....+.       .....+.+++.+||+.+|++||++.|+++.|+
T Consensus       225 ~~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         225 RLPKPE-------YCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             CCCCCc-------cCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            111111       11234778999999999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=5.5e-32  Score=287.07  Aligned_cols=244  Identities=20%  Similarity=0.292  Sum_probs=182.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +.|++.+.||+|+||.||+|+.. ++..||+|.+........+.+.+|+.++++++||||+++++++...+        .
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   83 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDG--------K   83 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC--------e
Confidence            55778889999999999999864 58999999998766666788999999999999999999999887653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|..++.+..  ..+++..+..++.|++.|++|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        84 ~~lv~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~  158 (292)
T cd06644          84 LWIMIEFCPGGAVDAIMLELD--RGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSA  158 (292)
T ss_pred             EEEEEecCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccce
Confidence            899999999999988876432  3488999999999999999999987   89999999999999999999999999975


Q ss_pred             cccccccc--------ccCCCCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          642 VSEDINSV--------GGKQEDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       642 ~~~~~~~~--------~~~~~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ........        .+..++..     ....++.++|||||||++|||++|+.|+.....  ......+... .....
T Consensus       159 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~-~~~~~  235 (292)
T cd06644         159 KNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKS-EPPTL  235 (292)
T ss_pred             eccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH--HHHHHHHhcC-CCccC
Confidence            43221100        01111110     112245679999999999999999998753221  1111111111 01111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+   .    .....+.+++.+||+.+|++||++.||++.
T Consensus       236 ~~~---~----~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         236 SQP---S----KWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             CCC---c----ccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            111   0    111236788999999999999999999763

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-32  Score=287.95  Aligned_cols=245  Identities=20%  Similarity=0.323  Sum_probs=185.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+|+.. ++..||+|.+........+.+.+|++++++++||||+++++++.+..        
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   75 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYEN--------   75 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC--------
Confidence            456888899999999999999864 68999999987766666678999999999999999999999988653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|..++.+..  ..+++.....++.+++.|++|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~  150 (280)
T cd06611          76 KLWILIEFCDGGALDSIMLELE--RGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVS  150 (280)
T ss_pred             eEEEEeeccCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccc
Confidence            6899999999999999987543  3488999999999999999999997   8999999999999999999999999997


Q ss_pred             ccccccccc-----c---cCCCCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          641 IVSEDINSV-----G---GKQEDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       641 ~~~~~~~~~-----~---~~~~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      .........     +   ...++..     .....+.++|||||||++|||++|+.|+.....  ......+.. .....
T Consensus       151 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~-~~~~~  227 (280)
T cd06611         151 AKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP--MRVLLKILK-SEPPT  227 (280)
T ss_pred             hhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH--HHHHHHHhc-CCCCC
Confidence            543221110     0   0111100     112345689999999999999999999864321  111111111 10111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +..+.       .....+.+++.+||+.+|.+||++.+|++.
T Consensus       228 ~~~~~-------~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         228 LDQPS-------KWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             cCCcc-------cCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            11110       111236788999999999999999999765

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=279.84  Aligned_cols=259  Identities=19%  Similarity=0.265  Sum_probs=182.2

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCC-cccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPH-LVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpn-iv~l~g~~~~~~~~~~~~  558 (766)
                      ..|+..++||+|.||+||+|+ ..+|+.||+|++.-...  .......+|+.++++++|+| ||+|++++.+...  ...
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~--~~~   88 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNN--HRG   88 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccc--ccc
Confidence            345556789999999999998 45799999999975433  22345688999999999999 9999999987541  011


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      ...+++|+||+.. +|.+++...... ..++-.....++.|+.+|++|||++   +|+||||||+|||++++|.+||+||
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDF  164 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADF  164 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeecc
Confidence            2368999999988 999998765421 3366677889999999999999998   8999999999999999999999999


Q ss_pred             CCCcccccccc-----c---ccCCCCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh---hcccCc
Q 004232          638 GLSIVSEDINS-----V---GGKQEDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---NSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~-----~---~~~~~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~---~~~~~~  705 (766)
                      |+|+...-...     .   -+.+++. .....++...|+||+|||+.||+++++-|+....  .+....+   ...+..
T Consensus       165 GlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se--~~ql~~If~~lGtP~e  242 (323)
T KOG0594|consen  165 GLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE--IDQLFRIFRLLGTPNE  242 (323)
T ss_pred             chHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH--HHHHHHHHHHcCCCCc
Confidence            99975431111     0   0111111 1123466788999999999999999887764332  2221111   111100


Q ss_pred             cc------ccc-----ccccCCCC--H---HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QR------LVD-----PVVMATSS--L---ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~------~~d-----~~~~~~~~--~---~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..      ..+     +.......  .   .......+++.+|++++|.+|.|++.++.+
T Consensus       243 ~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  243 KDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             cCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            00      000     00000000  0   001357899999999999999999999876

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=3.3e-32  Score=299.04  Aligned_cols=256  Identities=18%  Similarity=0.279  Sum_probs=179.5

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|+++++.++||||+++++++.+.+..   ...
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~---~~~   77 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHID---PFE   77 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCcc---ccc
Confidence            478889999999999999985 57899999998653  233456788999999999999999999998765311   113


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+. ++|.+.+...   ..+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a  150 (372)
T cd07853          78 EIYVVTELMQ-SDLHKIIVSP---QPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLA  150 (372)
T ss_pred             eEEEEeeccc-cCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccce
Confidence            5899999997 5787777543   3488999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccccc-----CC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCccc--
Q 004232          641 IVSEDINSVGG-----KQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQR--  707 (766)
Q Consensus       641 ~~~~~~~~~~~-----~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~~--  707 (766)
                      ...........     +.  ..|..   ...++.++|||||||++|||++|+.||....... ...+...........  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~  230 (372)
T cd07853         151 RVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMR  230 (372)
T ss_pred             eecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence            65432111000     00  01110   1224567899999999999999999986433211 111111000000000  


Q ss_pred             ---------c----cccc-cc--CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 ---------L----VDPV-VM--ATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ---------~----~d~~-~~--~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                               +    ..+. ..  .....+....+.+++.+|++.||.+|||+.|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         231 SACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                     0    0000 00  00000112346789999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.5e-32  Score=293.03  Aligned_cols=232  Identities=21%  Similarity=0.303  Sum_probs=170.4

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +|+.||+|+++...   ....+.+..|..++... +||||+++++++.+.+        ..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~--------~~~   72 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKE--------HLF   72 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCC--------EEE
Confidence            46999999999999864 68899999987542   22345566777787754 8999999999987653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~E~~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~  146 (316)
T cd05620          73 FVMEFLNGGDLMFHIQDKG---RFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKEN  146 (316)
T ss_pred             EEECCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeec
Confidence            9999999999999887543   378888999999999999999997   8999999999999999999999999998642


Q ss_pred             cccc----cc-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDIN----SV-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~----~~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ....    .. +   +..++......++.++|||||||++|||++|+.||.....  ...+..+...  .     +....
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~--~~~~~~~~~~--~-----~~~~~  217 (316)
T cd05620         147 VFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE--DELFESIRVD--T-----PHYPR  217 (316)
T ss_pred             ccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC--C-----CCCCC
Confidence            1110    00 0   1111111223456789999999999999999999864332  1112221111  0     11111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHH-HHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFE-DIL  747 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~-ev~  747 (766)
                      ...    ..+.+++.+|++.||++||++. ++.
T Consensus       218 ~~~----~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         218 WIT----KESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CCC----HHHHHHHHHHccCCHHHcCCChHHHH
Confidence            111    2366889999999999999984 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=3.4e-32  Score=292.30  Aligned_cols=233  Identities=23%  Similarity=0.301  Sum_probs=173.8

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||+||+|+.. +++.||||+++...   ......+.+|+.++..+ +||||+++++++.+.+        ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~--------~~~   72 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKD--------RLF   72 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCC--------EEE
Confidence            46999999999999865 58899999987542   23345677888888888 6999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.+++.||+|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  146 (318)
T cd05570          73 FVMEYVNGGDLMFHIQRSG---RFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEG  146 (318)
T ss_pred             EEEcCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeec
Confidence            9999999999999887543   488999999999999999999997   8999999999999999999999999998542


Q ss_pred             ccccc--c---c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINS--V---G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~--~---~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .....  .   +   +..++......++.++|||||||++|||+||+.||.....  ......+....  ..  -|   .
T Consensus       147 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~--~~~~~~i~~~~--~~--~~---~  217 (318)
T cd05570         147 ILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE--DELFQSILEDE--VR--YP---R  217 (318)
T ss_pred             CcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH--HHHHHHHHcCC--CC--CC---C
Confidence            11110  0   0   0111111123456789999999999999999999864332  11122221111  01  01   1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCH-----HHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSF-----EDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~-----~ev~~  748 (766)
                      ..+    ..+.+++.+||+.||.+||++     .++++
T Consensus       218 ~~~----~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         218 WLS----KEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             cCC----HHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            111    236789999999999999999     77754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=6.5e-32  Score=283.36  Aligned_cols=252  Identities=20%  Similarity=0.364  Sum_probs=181.5

Q ss_pred             CCcCCceecCCceeEEEEEec----CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |.+.+.||+|+||.||+|.+.    +++.||||.+...  .....+++.+|++++++++||||+++++++.......  .
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~--~   78 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKG--R   78 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCC--c
Confidence            456788999999999999853    4688999988654  2334667889999999999999999999887643211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT---PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                      ....++++||+++|+|..++....   ....+++.....++.+++.|++|||+.   +|+||||||+||++++++.+|++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~  155 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVA  155 (273)
T ss_pred             ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEEC
Confidence            123588999999999988774321   112478888999999999999999987   89999999999999999999999


Q ss_pred             cCCCCcccccccc--cccCC--------CCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          636 DYGLSIVSEDINS--VGGKQ--------EDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       636 DFGla~~~~~~~~--~~~~~--------~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      |||+++.......  .....        ++.......+.++|||||||++|||++ |+.|+.....  ......+.....
T Consensus       156 dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~~~  233 (273)
T cd05074         156 DFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN--SEIYNYLIKGNR  233 (273)
T ss_pred             cccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH--HHHHHHHHcCCc
Confidence            9999865422110  00000        000111234567999999999999999 7888753221  111111111110


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                         ...+   .    .....+.+++.+||+.+|++||++.||.+.|+.+
T Consensus       234 ---~~~~---~----~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         234 ---LKQP---P----DCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             ---CCCC---C----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence               0000   1    1123478899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=3.5e-32  Score=287.57  Aligned_cols=260  Identities=21%  Similarity=0.318  Sum_probs=187.5

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeec
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCID  550 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~  550 (766)
                      +.++.+.++.++|++.+.||+|+||.||+++. .+++.+|+|.+.... .....+.+|+.+++++ +||||++++++|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            34566667889999999999999999999985 468899999876532 2235678899999999 69999999998864


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      ....   ..+..++||||+++|+|.+++... .....+++.....++.+++.||.|||+.   +++||||||+||+++++
T Consensus        87 ~~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~  160 (286)
T cd06638          87 KDVK---NGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTE  160 (286)
T ss_pred             cccC---CCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCC
Confidence            3211   113689999999999999887642 1223578888999999999999999987   89999999999999999


Q ss_pred             CcEEEecCCCCccccccccc----ccCC--CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH
Q 004232          630 RIAKLSDYGLSIVSEDINSV----GGKQ--EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL  696 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~----~~~~--~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~  696 (766)
                      +.+|++|||++.........    .+..  ..|..       ...++.++|||||||++|||++|+.|+.....  ...+
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~--~~~~  238 (286)
T cd06638         161 GGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP--MRAL  238 (286)
T ss_pred             CCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch--hHHH
Confidence            99999999998654321110    0000  01111       12245689999999999999999999864321  1111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..... .......++..   .    ...+.+++.+||+.||++||++.||++.
T Consensus       239 ~~~~~-~~~~~~~~~~~---~----~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         239 FKIPR-NPPPTLHQPEL---W----SNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             hhccc-cCCCcccCCCC---c----CHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            11110 00111111111   1    1236789999999999999999999875

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=8e-32  Score=279.77  Aligned_cols=242  Identities=19%  Similarity=0.278  Sum_probs=181.7

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +|++.+.||+|+||.||+++.. ++..+|+|.++.. .....+.+.+|+.++++++||||+++++++.+.+        .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   72 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADG--------H   72 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECC--------E
Confidence            4777899999999999999854 6889999988643 2344577888999999999999999999987653        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.... ...++......++.+++.||+|||+.   +|+|+||||+||++++++.++++|||.+.
T Consensus        73 ~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~  148 (255)
T cd08219          73 LYIVMEYCDGGDLMQKIKLQR-GKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSAR  148 (255)
T ss_pred             EEEEEeeCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcce
Confidence            899999999999999886532 23478888899999999999999997   89999999999999999999999999986


Q ss_pred             ccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .........        ...++.......+.++||||||+++|||++|..|+.....  ......+. ......+.    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~--~~~~~~~~-~~~~~~~~----  221 (255)
T cd08219         149 LLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW--KNLILKVC-QGSYKPLP----  221 (255)
T ss_pred             eecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH--HHHHHHHh-cCCCCCCC----
Confidence            543221110        0011111123356689999999999999999999864322  11111111 11111110    


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ...    ...+.+++.+||+.||++||++.+|+..
T Consensus       222 -~~~----~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         222 -SHY----SYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             -ccc----CHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence             111    1236788999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=7.5e-32  Score=280.07  Aligned_cols=242  Identities=19%  Similarity=0.318  Sum_probs=182.9

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||.++. .+++.+++|.+...  .....+++.+|++++++++|+||+++++++.+.+        
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--------   72 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDN--------   72 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCC--------
Confidence            477789999999999999884 56889999987643  2444667889999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..+++|||+++|+|.+++.+.. ...+++..+..++.+++.|++|||+.   +++||||||+||++++++.+||+|||++
T Consensus        73 ~~~~~~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~  148 (256)
T cd08221          73 TLLIEMEYANGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGIS  148 (256)
T ss_pred             eEEEEEEecCCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcce
Confidence            6899999999999999987543 24578999999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccccc--------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSVGG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ...........        ..++.......+.++|||||||++|||++|+.|+.....  .+....+.. .......   
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~--~~~~~~~~~-~~~~~~~---  222 (256)
T cd08221         149 KILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP--LNLVVKIVQ-GNYTPVV---  222 (256)
T ss_pred             EEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHc-CCCCCCc---
Confidence            65433221100        011111112345679999999999999999999864322  222222211 1111110   


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .    .....+.+++.+||+.+|.+||++.++++.
T Consensus       223 --~----~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         223 --S----VYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             --c----ccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence              1    112336788999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=4.7e-32  Score=281.38  Aligned_cols=241  Identities=24%  Similarity=0.355  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEecC-CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|+..+.||+|+||.||+|+... +..+|+|.+.....  .+++.+|++++++++||||++++|++.+..        .
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--------~   72 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNT--------D   72 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCC--------c
Confidence            578888999999999999999764 78999999875433  678999999999999999999999988753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++++||+++++|.+++....  ..+++.....++.+++.|+.|||+.   +++||||+|+||++++++.+||+|||++.
T Consensus        73 ~~l~~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~  147 (256)
T cd06612          73 LWIVMEYCGAGSVSDIMKITN--KTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSG  147 (256)
T ss_pred             EEEEEecCCCCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccch
Confidence            899999999999999986533  3589999999999999999999987   89999999999999999999999999986


Q ss_pred             ccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .........        ...++.......+.++|||||||++|||+||+.|+......  .....+.. ........   
T Consensus       148 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~---  221 (256)
T cd06612         148 QLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM--RAIFMIPN-KPPPTLSD---  221 (256)
T ss_pred             hcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh--hhhhhhcc-CCCCCCCc---
Confidence            543322110        01111111123456899999999999999999998642211  11111000 00000000   


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          .......+.+++.+||+.+|.+||++.||++
T Consensus       222 ----~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         222 ----PEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             ----hhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence                0111134678899999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=7.1e-32  Score=286.78  Aligned_cols=242  Identities=21%  Similarity=0.353  Sum_probs=183.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .+|++.+.||.|+||.||+|.. .+++.||+|.+........+.+.+|+.++++++||||+++++++.+.+        .
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~   90 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGD--------E   90 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCc--------e
Confidence            3588889999999999999984 578999999987655555677889999999999999999999988653        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||+++|+|..++.+.    .+++.++..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~  163 (296)
T cd06655          91 LFVVMEYLAGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCA  163 (296)
T ss_pred             EEEEEEecCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccch
Confidence            89999999999999988643    378999999999999999999997   89999999999999999999999999986


Q ss_pred             cccccccc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ........        .+..++.......+.++|||||||++|||+||+.||......  .....+.. ........+. 
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~--~~~~~~~~-~~~~~~~~~~-  239 (296)
T cd06655         164 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL--RALYLIAT-NGTPELQNPE-  239 (296)
T ss_pred             hcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHh-cCCcccCCcc-
Confidence            43221111        011111112233556899999999999999999998643321  11111110 0011111110 


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .    ....+.+++.+||+.||.+||++.+|+..
T Consensus       240 --~----~~~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         240 --K----LSPIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             --c----CCHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence              1    11236788999999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.3e-32  Score=297.33  Aligned_cols=250  Identities=18%  Similarity=0.255  Sum_probs=181.4

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCC
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      ++....++|++.+.||+|+||.||+++.. +++.||+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  116 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            34445688999999999999999999864 68899999986432   233456788999999999999999999887653


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                              ..++||||+++|+|.+++...    .++......++.+++.||+|||+.   +|+||||||+|||++.++++
T Consensus       117 --------~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~i  181 (371)
T cd05622         117 --------YLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHL  181 (371)
T ss_pred             --------EEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCE
Confidence                    789999999999999988653    267777888999999999999997   89999999999999999999


Q ss_pred             EEecCCCCcccccccc-----cccCC--CCCCcc------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh
Q 004232          633 KLSDYGLSIVSEDINS-----VGGKQ--EDPNSW------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       633 kl~DFGla~~~~~~~~-----~~~~~--~~~~~~------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~  699 (766)
                      ||+|||++........     ..++.  ..|...      ..++.++|||||||++|||++|+.||.....  ......+
T Consensus       182 kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~i  259 (371)
T cd05622         182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL--VGTYSKI  259 (371)
T ss_pred             EEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH--HHHHHHH
Confidence            9999999865432111     00111  011111      1245689999999999999999999974332  2222222


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHHH
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWNL  750 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~L  750 (766)
                      ........+.++.   ..    ...+.+++.+|+..++.+  ||++.||.+..
T Consensus       260 ~~~~~~~~~~~~~---~~----s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         260 MNHKNSLTFPDDN---DI----SKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             HcCCCcccCCCcC---CC----CHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            2211111121110   11    123567888999844433  78999888753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=5e-32  Score=288.14  Aligned_cols=242  Identities=20%  Similarity=0.344  Sum_probs=182.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .+|.+.+.||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++...+        .
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--------~   90 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--------E   90 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--------E
Confidence            5688889999999999999985 579999999997655555677889999999999999999999998753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.+.    .+++..+..++.+++.||.|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~  163 (297)
T cd06656          91 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (297)
T ss_pred             EEEeecccCCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccce
Confidence            89999999999999998643    378889999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccccc--------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVGG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~~--------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........        ..++.......+.++|||||||++||++||+.||......  ........ ........+  
T Consensus       164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~--~~~~~~~~-~~~~~~~~~--  238 (297)
T cd06656         164 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL--RALYLIAT-NGTPELQNP--  238 (297)
T ss_pred             EccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc--hheeeecc-CCCCCCCCc--
Confidence            5432211100        0011111123456789999999999999999998643221  10000000 000111111  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ......+.+++.+||+.+|++||++++|++.
T Consensus       239 -----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         239 -----ERLSAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             -----cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 1111236788999999999999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.98  E-value=4.6e-32  Score=292.01  Aligned_cols=229  Identities=19%  Similarity=0.293  Sum_probs=167.7

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHH-HHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLD-LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~-~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||+||+|+.. +|+.||||++....   ....+++..|.. +++.++||||+++++++.+.+        ..+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~--------~~~   72 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTAD--------KLY   72 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCC--------EEE
Confidence            36899999999999864 78999999986532   122344445544 567899999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~  146 (323)
T cd05575          73 FVLDYVNGGELFFHLQRER---SFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (323)
T ss_pred             EEEcCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCccc
Confidence            9999999999999887543   478888889999999999999997   8999999999999999999999999998643


Q ss_pred             cccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......     +   +..++......++.++|||||||++|||++|+.||.....  ......+....  .. ..+    
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~~--~~-~~~----  217 (323)
T cd05575         147 IEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT--AEMYDNILNKP--LR-LKP----  217 (323)
T ss_pred             ccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH--HHHHHHHHcCC--CC-CCC----
Confidence            211110     0   1111111223456689999999999999999999864321  22222221111  01 111    


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                      ..    ...+.+++.+|++.||.+||++.
T Consensus       218 ~~----~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         218 NI----SVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CC----CHHHHHHHHHHhhcCHHhCCCCC
Confidence            11    12367889999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.98  E-value=4.6e-32  Score=283.92  Aligned_cols=247  Identities=15%  Similarity=0.303  Sum_probs=180.2

Q ss_pred             CCCcCCceecCCceeEEEEEecC--CceEEEEEccCC----------hhhhHHHHHHHHHHHHh-CCCCCcccccceeec
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSS----------KKYTVRNLKLRLDLLAK-LRHPHLVCLLGHCID  550 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~~~----------~~~~~~~~~~e~~~l~~-l~Hpniv~l~g~~~~  550 (766)
                      +|++.+.||+|+||.||+|+...  ++.+|+|.+...          .....+++.+|+.++.+ ++||||+++++++.+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47778899999999999999754  788999987532          12234567778888875 799999999999887


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      .+        ..++||||+++++|.+++... .....+++..+..++.+++.||.|||+..  +++||||||+||+++.+
T Consensus        81 ~~--------~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--~i~H~dl~~~nil~~~~  150 (269)
T cd08528          81 ND--------RLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK--RIVHRDLTPNNIMLGED  150 (269)
T ss_pred             CC--------eEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC--ceeecCCCHHHEEECCC
Confidence            53        689999999999999887542 12235788899999999999999999632  79999999999999999


Q ss_pred             CcEEEecCCCCccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          630 RIAKLSDYGLSIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      +.+||+|||++.........    +   ...++.......+.++|||||||++|||++|+.|+.....  ......+.. 
T Consensus       151 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~--~~~~~~~~~-  227 (269)
T cd08528         151 DKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNM--LSLATKIVE-  227 (269)
T ss_pred             CcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCH--HHHHHHHhh-
Confidence            99999999998654332110    0   1111111223356689999999999999999999853321  111111111 


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .......+    ..    ....+.+++.+||+.||++||++.||..++.
T Consensus       228 ~~~~~~~~----~~----~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         228 AVYEPLPE----GM----YSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             ccCCcCCc----cc----CCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            11111000    01    1134678899999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=6.1e-32  Score=281.57  Aligned_cols=246  Identities=20%  Similarity=0.308  Sum_probs=185.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+|... +++.+|+|.+........+.+.+|++++++++||||++++|++.+..        
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~--------   73 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRD--------   73 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCC--------
Confidence            357888899999999999999864 57889999998765556788999999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..+++|||+++++|.+++....  ..++......++.+++.|++|||+.   +++||||||+||++++++.+||+|||++
T Consensus        74 ~~~l~~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~  148 (262)
T cd06613          74 KLWIVMEYCGGGSLQDIYQVTR--GPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVS  148 (262)
T ss_pred             EEEEEEeCCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccc
Confidence            6899999999999999887542  3488889999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccc--------ccCCCCCCccc---CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          641 IVSEDINSV--------GGKQEDPNSWE---MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       641 ~~~~~~~~~--------~~~~~~~~~~~---~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      .........        ....++.....   ..+.++|||||||++|||+||+.|+.......  ........    .+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~--~~~~~~~~----~~~  222 (262)
T cd06613         149 AQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMR--ALFLISKS----NFP  222 (262)
T ss_pred             hhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhc----cCC
Confidence            654321100        01111111112   45567899999999999999999986432211  11111111    000


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+.. . ........+.+++.+||..+|.+||++.+|+.
T Consensus       223 ~~~~-~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         223 PPKL-K-DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             Cccc-c-chhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            0110 0 01112234778999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.98  E-value=9.6e-32  Score=279.30  Aligned_cols=239  Identities=18%  Similarity=0.325  Sum_probs=179.8

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |+..+.||+|+||+||+|... ++..||+|.+....     ....+.+.+|++++++++||||+++++++.+..      
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~------   75 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREED------   75 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCC------
Confidence            566789999999999999975 78999999885432     234577899999999999999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++|+||+++++|.+++.+..   .+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||
T Consensus        76 --~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~  147 (258)
T cd06632          76 --NLYIFLELVPGGSLAKLLKKYG---SFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFG  147 (258)
T ss_pred             --eEEEEEEecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCc
Confidence              6899999999999999987543   378999999999999999999987   89999999999999999999999999


Q ss_pred             CCcccccccccc---c----CCCCCCccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSVG---G----KQEDPNSWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~~---~----~~~~~~~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ++..........   .    ..++..... .++.++|||||||++|||++|+.|+.....  ...............+  
T Consensus       148 ~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~--  223 (258)
T cd06632         148 MAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG--VAAVFKIGRSKELPPI--  223 (258)
T ss_pred             cceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH--HHHHHHHHhcccCCCc--
Confidence            986543221100   0    011111111 256689999999999999999999864321  1111111111111111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ...    ....+.+++.+||+.+|.+||++.++++
T Consensus       224 ---~~~----~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         224 ---PDH----LSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             ---CCC----cCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence               011    1123678899999999999999999975

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.98  E-value=2.4e-32  Score=288.60  Aligned_cols=252  Identities=19%  Similarity=0.291  Sum_probs=178.4

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+.. +++.||||.++...  ....+.+.+|+.++++++||||+++++++.+++        
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   72 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQES--------   72 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCC--------
Confidence            4777889999999999999864 68999999986432  223467888999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ |+|.+++........+++.....++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          73 RLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             eEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccce
Confidence            6899999998 68988886544445688999999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccc--------ccCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHHhhhhcc-------
Q 004232          641 IVSEDINSV--------GGKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EELDSLNSQ-------  702 (766)
Q Consensus       641 ~~~~~~~~~--------~~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~~~~~~~-------  702 (766)
                      .........        ....++.. .....+.++|||||||++|||+||+.|+........  .........       
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T cd07861         149 RAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPG  228 (285)
T ss_pred             eecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhc
Confidence            643211110        00111100 112245678999999999999999999864322110  000000000       


Q ss_pred             ----cC----ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          703 ----EG----RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       703 ----~~----~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          ..    ........... ........+.+++.+|++.||++|||+.+|+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         229 VTSLPDYKNTFPKWKKGSLRS-AVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             chhhHHHHhhccccCcchhHH-hcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                00    00000000000 00001133578999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.98  E-value=7e-32  Score=283.98  Aligned_cols=239  Identities=18%  Similarity=0.318  Sum_probs=181.8

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .|+..+.||+|+||.||+|... ++..||+|.++... ......+.+|++++++++||||+++++++.+..        .
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   76 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGT--------K   76 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--------E
Confidence            4666788999999999999864 68899999987543 344678899999999999999999999988753        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++...    .+++.....++.+++.|++|+|+.   +++|+||+|+||+++.++.++++|||++.
T Consensus        77 ~~lv~e~~~~~~L~~~i~~~----~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~  149 (277)
T cd06640          77 LWIIMEYLGGGSALDLLRAG----PFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             EEEEEecCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccce
Confidence            89999999999999988643    378888889999999999999987   89999999999999999999999999986


Q ss_pred             ccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .........        ..+++.......+.++|||||||++|||+||+.|+......  .....+ .....     +  
T Consensus       150 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~-~~~~~-----~--  219 (277)
T cd06640         150 QLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM--RVLFLI-PKNNP-----P--  219 (277)
T ss_pred             eccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH--hHhhhh-hcCCC-----C--
Confidence            543221110        11111111234566899999999999999999998632211  111100 00000     1  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .........+.+++.+||+.+|++||++.+|++.
T Consensus       220 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         220 --TLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             --CCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence              1112233457899999999999999999999876

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.98  E-value=3.7e-32  Score=293.02  Aligned_cols=233  Identities=20%  Similarity=0.282  Sum_probs=169.4

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHH-HHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLD-LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~-~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||+||+|+. .+|+.||||++....   ....+++..|.. +++.++||||+++++++...+        ..+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~--------~~~   72 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTE--------KLY   72 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCC--------EEE
Confidence            3689999999999985 478999999986532   223345555554 577899999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~  146 (325)
T cd05604          73 FVLDFVNGGELFFHLQRER---SFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (325)
T ss_pred             EEEcCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccC
Confidence            9999999999998886543   478889999999999999999997   8999999999999999999999999998643


Q ss_pred             ccccc----c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINS----V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~----~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .....    . +   +..++......++.++|||||||++|||++|+.||.....  ......+....   ....+    
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~~~~~~~---~~~~~----  217 (325)
T cd05604         147 IAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV--AEMYDNILHKP---LVLRP----  217 (325)
T ss_pred             CCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH--HHHHHHHHcCC---ccCCC----
Confidence            21110    0 0   1111111223456789999999999999999999864321  12222221111   00111    


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...    ..+.+++.+|++.+|.+||++++.+.
T Consensus       218 ~~~----~~~~~ll~~ll~~~p~~R~~~~~~~~  246 (325)
T cd05604         218 GAS----LTAWSILEELLEKDRQRRLGAKEDFL  246 (325)
T ss_pred             CCC----HHHHHHHHHHhccCHHhcCCCCCCHH
Confidence            111    23668899999999999998864433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.98  E-value=9.6e-32  Score=293.92  Aligned_cols=256  Identities=18%  Similarity=0.220  Sum_probs=179.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|++.+.||+|+||.||+++. .+|..||||++...  .......+.+|+.+++.++||||+++++++.......  
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~--   96 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLE--   96 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcc--
Confidence            347799999999999999999985 46899999998643  2334567889999999999999999999886543111  


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+++ ++.+.++.     .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Df  167 (359)
T cd07876          97 EFQDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF  167 (359)
T ss_pred             ccceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecC
Confidence            11357999999986 56555542     267888889999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---------
Q 004232          638 GLSIVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---------  701 (766)
Q Consensus       638 Gla~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---------  701 (766)
                      |+++........       .+..++......++.++|||||||++|||+||+.||......  ..+..+..         
T Consensus       168 g~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~--~~~~~~~~~~~~~~~~~  245 (359)
T cd07876         168 GLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHI--DQWNKVIEQLGTPSAEF  245 (359)
T ss_pred             CCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHhcCCCcHHH
Confidence            998653221110       111122122234566899999999999999999998643211  10100000         


Q ss_pred             -------------cc-Cc-----cccccccccC---CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 -------------QE-GR-----QRLVDPVVMA---TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 -------------~~-~~-----~~~~d~~~~~---~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                   .. ..     .+........   .........+.+++.+|++.||++|||+.|++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  315 (359)
T cd07876         246 MNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRH  315 (359)
T ss_pred             HHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcC
Confidence                         00 00     0000000000   0000112346789999999999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.98  E-value=7.8e-32  Score=290.76  Aligned_cols=189  Identities=20%  Similarity=0.262  Sum_probs=148.8

Q ss_pred             cCCceecC--CceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          487 MSAIMGEG--SYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       487 ~~~~lG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +.++||+|  +|++||+++. .+|+.||||+++...  ....+.+.+|+++++.++||||++++++|.+.+        .
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--------~   73 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN--------E   73 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECC--------E
Confidence            45789999  7899999985 578999999987542  233456788999999999999999999998763        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||...
T Consensus        74 ~~lv~e~~~~~~l~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~  149 (327)
T cd08227          74 LWVVTSFMAYGSAKDLICTHFM-DGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNL  149 (327)
T ss_pred             EEEEEeccCCCcHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhh
Confidence            8999999999999999865432 3488999999999999999999987   89999999999999999999999998653


Q ss_pred             ccccccc----------c--ccC-CCCCCcc----cCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          642 VSEDINS----------V--GGK-QEDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       642 ~~~~~~~----------~--~~~-~~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .......          .  ... ...|...    ..++.++|||||||++|||++|+.||..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  212 (327)
T cd08227         150 SMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD  212 (327)
T ss_pred             ccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence            2211000          0  000 0111111    2355789999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.98  E-value=1.1e-31  Score=280.56  Aligned_cols=238  Identities=20%  Similarity=0.327  Sum_probs=177.3

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      |.+...||+|+||.||+|.. .+++.||+|.+.....         ...+.+.+|++++++++||||+++++++.+.+  
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--   79 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDAD--   79 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCC--
Confidence            55678999999999999985 4688999998854321         12356889999999999999999999987753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++++|.+++....   .+++.....++.+++.|++|||+.   +++||||||+||++++++.+||
T Consensus        80 ------~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l  147 (267)
T cd06628          80 ------HLNIFLEYVPGGSVAALLNNYG---AFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKI  147 (267)
T ss_pred             ------ccEEEEEecCCCCHHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEe
Confidence                  6799999999999999997543   378888999999999999999987   8999999999999999999999


Q ss_pred             ecCCCCccccccccc-----------c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh
Q 004232          635 SDYGLSIVSEDINSV-----------G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       635 ~DFGla~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~  700 (766)
                      +|||+++........           +   ...++.......+.++|||||||++|||++|+.|+.....  ...+..+.
T Consensus       148 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~  225 (267)
T cd06628         148 SDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ--LQAIFKIG  225 (267)
T ss_pred             cccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH--HHHHHHHh
Confidence            999998655321100           0   0001111112345678999999999999999999864321  11111111


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .      ...+......    ...+.+++.+||+.||.+||++.||++
T Consensus       226 ~------~~~~~~~~~~----~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         226 E------NASPEIPSNI----SSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             c------cCCCcCCccc----CHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            1      0111111111    234678899999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.98  E-value=6.3e-32  Score=282.56  Aligned_cols=243  Identities=19%  Similarity=0.264  Sum_probs=180.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|+..+.||+|+||.||+|+. .+++.||+|.++.........+.+|+.+++.++||||+++++++.+.+        .
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~--------~   80 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRD--------K   80 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCC--------E
Confidence            4567778999999999999985 468999999987665555567888999999999999999999987653        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++....   .+++.+...++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd06645          81 LWICMEFCGGGSLQDIYHVTG---PLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSA  154 (267)
T ss_pred             EEEEEeccCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeee
Confidence            899999999999999887543   478999999999999999999997   89999999999999999999999999985


Q ss_pred             ccccccc--------cccCCCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc-cccc
Q 004232          642 VSEDINS--------VGGKQEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR-QRLV  709 (766)
Q Consensus       642 ~~~~~~~--------~~~~~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~-~~~~  709 (766)
                      .......        ....+++..   ....++.++|||||||++|||++|+.|+........  .......... ....
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~  232 (267)
T cd06645         155 QITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA--LFLMTKSNFQPPKLK  232 (267)
T ss_pred             EccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh--HHhhhccCCCCCccc
Confidence            4322110        001111111   112355689999999999999999998753322111  1111100000 0000


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +.   ...+    ..+.+++.+|++.+|++||++++|+.
T Consensus       233 ~~---~~~~----~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         233 DK---MKWS----NSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             cc---CCCC----HHHHHHHHHHccCCchhCcCHHHHhc
Confidence            00   0111    23678899999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.98  E-value=1.3e-31  Score=283.17  Aligned_cols=243  Identities=18%  Similarity=0.228  Sum_probs=177.7

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |+..+.||+|+||+||+|.. .+++.||+|.+....   ....+.+.+|++++++++|+||+++.+++.+.+        
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--------   73 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKD--------   73 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCC--------
Confidence            55678899999999999986 468999999986542   223455788999999999999999998887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|..++.... ...+++.....++.|++.||.|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~  149 (285)
T cd05632          74 ALCLVLTIMNGGDLKFHIYNMG-NPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEeccCccHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcc
Confidence            6899999999999998886533 23589999999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........       ....++.......+.++|||||||++|||+||..||....... ...+....... ...     
T Consensus       150 ~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~-~~~-----  223 (285)
T cd05632         150 VKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLET-EEV-----  223 (285)
T ss_pred             eecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhcc-ccc-----
Confidence            553221110       1111111112345668899999999999999999986432211 11111111100 000     


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS-----FEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~~  749 (766)
                      .....    ...+.+++.+|++.||++||+     +++++..
T Consensus       224 ~~~~~----~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         224 YSAKF----SEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             cCccC----CHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence            11111    123678899999999999999     5566553

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.1e-31  Score=282.07  Aligned_cols=240  Identities=20%  Similarity=0.319  Sum_probs=182.4

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +|++.+.||.|+||.||+|+.. +++.||+|.+.... ......+.+|++++++++||||+++++++.+..        .
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   73 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGS--------K   73 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECC--------e
Confidence            5777889999999999999864 68999999986543 344567889999999999999999999988653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||+++|+|.+++...    .+++.....++.|++.|+.|||+.   +++||||+|+||++++++.++++|||+++
T Consensus        74 ~~~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  146 (274)
T cd06609          74 LWIIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSG  146 (274)
T ss_pred             EEEEEEeeCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccce
Confidence            89999999999999998753    488999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ........     +   ...++......++.++|||||||++|||+||+.|+.....  ......+. ......+.+.. 
T Consensus       147 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~--~~~~~~~~-~~~~~~~~~~~-  222 (274)
T cd06609         147 QLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP--MRVLFLIP-KNNPPSLEGNK-  222 (274)
T ss_pred             eecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch--HHHHHHhh-hcCCCCCcccc-
Confidence            54332110     0   1111111223356789999999999999999999863221  11111111 11111111110 


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             ....+.+++.+||..+|++||+++++++.
T Consensus       223 -------~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         223 -------FSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             -------cCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence                   11236788999999999999999999764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-32  Score=293.80  Aligned_cols=237  Identities=23%  Similarity=0.360  Sum_probs=181.3

Q ss_pred             ceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEc
Q 004232          490 IMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEF  568 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey  568 (766)
                      ++|+|.||+||.|+. .+...+|||.++.......+.+..||.+.++++|+|||+++|.|.+.+        .+-+.||-
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senG--------f~kIFMEq  653 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENG--------FFKIFMEQ  653 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCC--------eEEEEeec
Confidence            689999999999994 456789999998877777888999999999999999999999987764        78899999


Q ss_pred             cCCCChhhhhhcCCCCCCC--CHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCCccccc
Q 004232          569 MSNGNFRTHISENTPGKVL--NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSIVSED  645 (766)
Q Consensus       569 ~~~GsL~~~l~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla~~~~~  645 (766)
                      +|||+|..+|+..  -.++  .....-.+..||.+||.|||+.   .|||||||-.|||++ -.|.+||+|||-++....
T Consensus       654 VPGGSLSsLLrsk--WGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg  728 (1226)
T KOG4279|consen  654 VPGGSLSSLLRSK--WGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG  728 (1226)
T ss_pred             CCCCcHHHHHHhc--cCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhcc
Confidence            9999999999753  1224  4556677889999999999998   789999999999997 578999999999876543


Q ss_pred             ccccccCC--------CCC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          646 INSVGGKQ--------EDP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       646 ~~~~~~~~--------~~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......+.        ++.  .....+..++|||||||++.||.||++||.+-+.-....+.     ....+ +.|.+  
T Consensus       729 inP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFk-----VGmyK-vHP~i--  800 (1226)
T KOG4279|consen  729 INPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFK-----VGMYK-VHPPI--  800 (1226)
T ss_pred             CCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhh-----hccee-cCCCC--
Confidence            32221111        110  11234566889999999999999999999754432111111     11122 22322  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        +++...++..++++|++.||.+||++.+++..
T Consensus       801 --Peelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  801 --PEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             --cHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence              33444557889999999999999999999865

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.98  E-value=4.8e-32  Score=290.02  Aligned_cols=253  Identities=17%  Similarity=0.237  Sum_probs=178.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|.+.+.||+|+||.||+|+.. +++.||+|+++.... .....+.+|++++++++||||+++++++...+        
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   77 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDK--------   77 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCC--------
Confidence            46888899999999999999854 688899999865432 22346778999999999999999999988653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++ +|.+++....  ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~  151 (309)
T cd07872          78 SLTLVFEYLDK-DLKQYMDDCG--NIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLA  151 (309)
T ss_pred             eEEEEEeCCCC-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccc
Confidence            68999999985 8888776543  3478888899999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc--------
Q 004232          641 IVSEDINSV-----GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ--------  702 (766)
Q Consensus       641 ~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~--------  702 (766)
                      .........     +... ..|.   .....+.++|||||||++|||+||+.||...... ....+......        
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (309)
T cd07872         152 RAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPG  231 (309)
T ss_pred             eecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhh
Confidence            643221110     0000 0111   1123456789999999999999999998643321 11111110000        


Q ss_pred             ----cCccccccccccCCCC----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 ----EGRQRLVDPVVMATSS----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ----~~~~~~~d~~~~~~~~----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ........+.......    ...-..+.+++.+|++.||.+|||+.|+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         232 ISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             hcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence                0000000000000000    0011236789999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.98  E-value=1.8e-31  Score=279.06  Aligned_cols=242  Identities=21%  Similarity=0.296  Sum_probs=175.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|+..+.||+|+||.||+|.. .++..||+|++....     ....+.+.+|+.++++++||||+++++++.+...   
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~---   78 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAE---   78 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCC---
Confidence            3688889999999999999985 468999999885331     2334678899999999999999999998875321   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ...++++||+++++|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        79 ---~~~~l~~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~d  149 (266)
T cd06651          79 ---KTLTIFMEYMPGGSVKDQLKAYG---ALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGD  149 (266)
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEcc
Confidence               36799999999999999987543   378889999999999999999987   899999999999999999999999


Q ss_pred             CCCCccccccccc-------c----cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV-------G----GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~-------~----~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||++.........       .    ...++.......+.++|||||||++|||+||+.|+.....  ...........  
T Consensus       150 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~--~~~~~~~~~~~--  225 (266)
T cd06651         150 FGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA--MAAIFKIATQP--  225 (266)
T ss_pred             CCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch--HHHHHHHhcCC--
Confidence            9998643221100       0    0111111112345688999999999999999999864321  11111111111  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ..+......    ...+.+++ +||..+|++||+|+||++
T Consensus       226 ---~~~~~~~~~----~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         226 ---TNPQLPSHI----SEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             ---CCCCCchhc----CHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence               011111111    11234444 799999999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.98  E-value=4.3e-32  Score=286.82  Aligned_cols=252  Identities=21%  Similarity=0.316  Sum_probs=179.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|+..+.||+|+||.||+|... +++.||+|++....  ....+.+.+|++++++++||||+++++++.+.+       
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   73 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKK-------   73 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCC-------
Confidence            35778899999999999999975 58999999886432  223567888999999999999999999987653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|+||++++++..+.....   .++|..+..++.+++.||+|||+.   +++||||+|+||++++++.+||+|||+
T Consensus        74 -~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~  146 (286)
T cd07846          74 -RLYLVFEFVDHTVLDDLEKYPN---GLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGF  146 (286)
T ss_pred             -eEEEEEecCCccHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeee
Confidence             6899999999999988765432   388999999999999999999987   899999999999999999999999999


Q ss_pred             Ccccccccccc--------cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcc--cCccc
Q 004232          640 SIVSEDINSVG--------GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQ--EGRQR  707 (766)
Q Consensus       640 a~~~~~~~~~~--------~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~--~~~~~  707 (766)
                      +..........        ...++.. .....+.++|||||||++|||++|++|+....... ..........  .....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (286)
T cd07846         147 ARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQE  226 (286)
T ss_pred             eeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHH
Confidence            86543221110        0111111 11234567999999999999999998886332110 0000000000  00000


Q ss_pred             c----------ccccccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          708 L----------VDPVVMATSS-----LESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       708 ~----------~d~~~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .          ..+.......     ......+.+++.+||+.+|++||+|.+|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         227 IFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             HhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            0          0000000000     011234788999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.98  E-value=7e-32  Score=290.46  Aligned_cols=234  Identities=19%  Similarity=0.298  Sum_probs=172.3

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +|+..+.||+|+||.||+|+. .+|+.||+|+++...   ....+.+..|..+++.+. |++|+++++++.+.       
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-------   73 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTV-------   73 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecC-------
Confidence            467789999999999999985 468999999987532   233456778888888886 56777888777664       


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       +..++||||+++|+|.+++.+..   .+++.+...++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        74 -~~~~lv~Ey~~~g~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg  146 (323)
T cd05615          74 -DRLYFVMEYVNGGDLMYHIQQVG---KFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFG  146 (323)
T ss_pred             -CEEEEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccc
Confidence             36899999999999999987543   388999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc----c-cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINS----V-GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~----~-~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +++.......    . +.   ..++......++.++|||||||++|||+||+.|+.....  ......+....  ..+  
T Consensus       147 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~~~~i~~~~--~~~--  220 (323)
T cd05615         147 MCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE--DELFQSIMEHN--VSY--  220 (323)
T ss_pred             cccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCC--
Confidence            9864321110    0 11   111111223456789999999999999999999864332  11112221111  011  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                      |   ...+    ..+.+++.+|++.+|.+|++..
T Consensus       221 p---~~~~----~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         221 P---KSLS----KEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             C---ccCC----HHHHHHHHHHcccCHhhCCCCC
Confidence            1   1111    2367889999999999999853

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.98  E-value=8.6e-32  Score=284.57  Aligned_cols=243  Identities=18%  Similarity=0.269  Sum_probs=179.0

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |+..+.||+|+||.||++... +++.||||.+....   ....+.+..|+.++++++|+||+++++.+.+.+        
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~--------   73 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKD--------   73 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCC--------
Confidence            667789999999999999854 68999999986532   222355778999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        74 ~~~lv~e~~~g~~L~~~l~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~  149 (285)
T cd05630          74 ALCLVLTLMNGGDLKFHIYHMG-EAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLA  149 (285)
T ss_pred             EEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccce
Confidence            6899999999999999886433 23488899999999999999999986   8999999999999999999999999998


Q ss_pred             ccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........    +   ...++......++.++|||||||++|||++|+.||....... ........... ...     
T Consensus       150 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~-~~~-----  223 (285)
T cd05630         150 VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-QEE-----  223 (285)
T ss_pred             eecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhh-hhh-----
Confidence            654321111    0   111111112345678999999999999999999986432211 11111111000 000     


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS-----FEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~~  749 (766)
                      .....    ...+.+++.+||+.||.+||+     +.|++++
T Consensus       224 ~~~~~----~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         224 YSEKF----SPDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             cCccC----CHHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            01111    123678899999999999999     7788763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.98  E-value=4.3e-32  Score=296.73  Aligned_cols=192  Identities=20%  Similarity=0.335  Sum_probs=154.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|+..+.||+|+||.||+++.. +++.||||+++...   ....+.+.+|+.++.+++||||+++++.+.+.+      
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~------   74 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKR------   74 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC------
Confidence            46888899999999999999864 68999999986532   233567888999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG  146 (360)
T cd05627          75 --NLYLIMEFLPGGDMMTLLMKKD---TLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFG  146 (360)
T ss_pred             --EEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeecc
Confidence              7899999999999999987543   378888899999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc---------------------------------------cccC----CCCCCcccCCCCCCCEeehhHHH
Q 004232          639 LSIVSEDINS---------------------------------------VGGK----QEDPNSWEMTKLEDDVFSFGFML  675 (766)
Q Consensus       639 la~~~~~~~~---------------------------------------~~~~----~~~~~~~~~~~~~~DV~SfGvil  675 (766)
                      +++.......                                       ..++    .++......++.++|||||||++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil  226 (360)
T cd05627         147 LCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIM  226 (360)
T ss_pred             CCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceecccccee
Confidence            9854321100                                       0000    00001113355689999999999


Q ss_pred             HHHhcCCCccccC
Q 004232          676 LESVAGPSVAARK  688 (766)
Q Consensus       676 ~ElltG~~p~~~~  688 (766)
                      |||+||+.||...
T Consensus       227 yel~tG~~Pf~~~  239 (360)
T cd05627         227 YEMLIGYPPFCSE  239 (360)
T ss_pred             eecccCCCCCCCC
Confidence            9999999998643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.98  E-value=1.7e-31  Score=288.07  Aligned_cols=231  Identities=20%  Similarity=0.281  Sum_probs=169.4

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|+.. +++.||||+++...   ....+.+.+|+.++.++ +||||+++++++.+..        .++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--------~~~   72 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTS--------RLF   72 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCC--------EEE
Confidence            46999999999999864 67899999997542   23356688899999888 6999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~  146 (327)
T cd05617          73 LVIEYVNGGDLMFHMQRQR---KLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEG  146 (327)
T ss_pred             EEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceec
Confidence            9999999999998886543   488999999999999999999997   8999999999999999999999999998642


Q ss_pred             ccccc----cccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc----chHHHHhhhhcccCccccccc
Q 004232          644 EDINS----VGGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ----FLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       644 ~~~~~----~~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~----~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .....    ..++    .++......++.++|||||||++|||+||+.||.....    ............. ..++  |
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~--p  223 (327)
T cd05617         147 LGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEK-PIRI--P  223 (327)
T ss_pred             cCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhC-CCCC--C
Confidence            11110    0011    11111123456789999999999999999999853211    1111111111110 0111  1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      .   ..+    ..+.+++.+|++.||.+||++
T Consensus       224 ~---~~~----~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         224 R---FLS----VKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             C---CCC----HHHHHHHHHHhccCHHHcCCC
Confidence            1   111    235688999999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.98  E-value=1.8e-31  Score=277.39  Aligned_cols=242  Identities=20%  Similarity=0.306  Sum_probs=181.0

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+++.. +++.||+|++....  ....+.+.+|++++++++|||++++++.+...+       .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-------~   73 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGED-------G   73 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCC-------C
Confidence            4778899999999999999854 57899999986432  334567889999999999999999998765432       2


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++++|.+++.... ...+++.++..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~~~l~~~l~~~~-~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~  149 (257)
T cd08223          74 LLYIVMGFCEGGDLYHKLKEQK-GKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIA  149 (257)
T ss_pred             EEEEEecccCCCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccce
Confidence            5799999999999999987542 24588999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........        ...+++.......+.++|||||||++|||++|+.|+.....  ......+. .+.....    
T Consensus       150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~--~~~~~~~~-~~~~~~~----  222 (257)
T cd08223         150 RVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM--NSLVYRII-EGKLPPM----  222 (257)
T ss_pred             EEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHH-hcCCCCC----
Confidence            654321111        01111111223345689999999999999999999864322  11111111 1111110    


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           .......+.+++.+||+.+|.+||++.++++
T Consensus       223 -----~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         223 -----PKDYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             -----ccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                 0111234778999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.98  E-value=6.3e-32  Score=314.76  Aligned_cols=251  Identities=16%  Similarity=0.268  Sum_probs=182.6

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ...++|.+.+.||+|+||+||+|+. .++..||+|.+...  .......+..|+.++++++|||||++++++.+...   
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~---   86 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKAN---   86 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCC---
Confidence            3457899999999999999999985 45788999988643  23445778999999999999999999998875431   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC----CCcccCCCCCCceEEcCC--
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVI----PGFFNNRVKTNNILLNEH--  629 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~----~~ivHrdlk~~NILld~~--  629 (766)
                         ..+|+||||+++|+|.++|.... ....+++...+.|+.||+.||+|||+...    .+|+||||||+|||++.+  
T Consensus        87 ---~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~  163 (1021)
T PTZ00266         87 ---QKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIR  163 (1021)
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcc
Confidence               36899999999999999987532 12358999999999999999999998531    259999999999999642  


Q ss_pred             ---------------CcEEEecCCCCccccccccc----ccCC-CCCCc----ccCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          630 ---------------RIAKLSDYGLSIVSEDINSV----GGKQ-EDPNS----WEMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       630 ---------------~~~kl~DFGla~~~~~~~~~----~~~~-~~~~~----~~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                                     +.+||+|||++.........    +... ..|..    ...++.++|||||||++|||+||+.||
T Consensus       164 ~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF  243 (1021)
T PTZ00266        164 HIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPF  243 (1021)
T ss_pred             ccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCC
Confidence                           35899999998654321111    1100 01111    123456899999999999999999998


Q ss_pred             ccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          686 ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...... ...+..+.. .  ..+   .. ...    ...+.+|+.+||+.+|.+||++.|++.
T Consensus       244 ~~~~~~-~qli~~lk~-~--p~l---pi-~~~----S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        244 HKANNF-SQLISELKR-G--PDL---PI-KGK----SKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             CcCCcH-HHHHHHHhc-C--CCC---Cc-CCC----CHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            643221 111111111 1  010   00 111    123678999999999999999999984

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.98  E-value=2.7e-31  Score=280.54  Aligned_cols=252  Identities=22%  Similarity=0.282  Sum_probs=180.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|+....||+|+||.||+|+.. +|+.||+|++....  ....+.+.+|++++++++|||++++++++....       
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~-------   73 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR-------   73 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCC-------
Confidence            35788899999999999999865 68999999886432  223456789999999999999999999988753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||++++.+..+....   ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        74 -~~~~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~  146 (286)
T cd07847          74 -KLHLVFEYCDHTVLNELEKNP---RGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGF  146 (286)
T ss_pred             -EEEEEEeccCccHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECcccc
Confidence             689999999999998876543   2488999999999999999999996   899999999999999999999999999


Q ss_pred             Cccccccccc----ccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-Hhhhh----c----
Q 004232          640 SIVSEDINSV----GGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-LDSLN----S----  701 (766)
Q Consensus       640 a~~~~~~~~~----~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-~~~~~----~----  701 (766)
                      +.........    ....  ..|..   ....+.++|||||||++|||+||+.||.......... +....    .    
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (286)
T cd07847         147 ARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQ  226 (286)
T ss_pred             ceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhh
Confidence            8654332210    0000  01111   1234568999999999999999999986432211110 10000    0    


Q ss_pred             ---c-cCccccccccccCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          702 ---Q-EGRQRLVDPVVMATSSLE-----SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       702 ---~-~~~~~~~d~~~~~~~~~~-----~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         . ........+......+.+     ....+.+++.+||+.+|++||++.|++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         227 IFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             hcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence               0 000000001000000000     1234778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.98  E-value=1.7e-31  Score=277.51  Aligned_cols=241  Identities=17%  Similarity=0.269  Sum_probs=181.7

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||+++. .+|+.||+|++...  .....+++.+|+.++++++||||+++++++.+.+        
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   72 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENG--------   72 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCC--------
Confidence            477789999999999999985 46889999998643  2334567899999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+++++|.+++.+... ..+++.....++.+++.|++|||+.   +++|+||+|+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~  148 (256)
T cd08218          73 NLYIVMDYCEGGDLYKKINAQRG-VLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIA  148 (256)
T ss_pred             eEEEEEecCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccce
Confidence            78999999999999998875432 2478889999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ..........        ..+++.......+.++|||||||++|||+||+.|+.....  ......+.. +.....    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~--~~~~~~~~~-~~~~~~----  221 (256)
T cd08218         149 RVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM--KNLVLKIIR-GSYPPV----  221 (256)
T ss_pred             eecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH--HHHHHHHhc-CCCCCC----
Confidence            6543321110        1111111123455689999999999999999999864322  111111111 111110    


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           +......+.+++.+||+.+|++||+|++|++
T Consensus       222 -----~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         222 -----SSHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             -----cccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                 0111234778999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.98  E-value=1.4e-31  Score=288.05  Aligned_cols=229  Identities=20%  Similarity=0.283  Sum_probs=166.3

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHH-HHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLD-LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~-~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ++||+|+||.||+|+.. +|+.||+|++....   ....+++.+|.. +++.++||||+++++++.+.+        ..+
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~--------~~~   72 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAE--------KLY   72 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCC--------EEE
Confidence            46999999999999864 68899999986532   222344555554 678899999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+.......++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~  146 (321)
T cd05603          73 FVLDYVNGGELFFHLQRER---CFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEG  146 (321)
T ss_pred             EEEcCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccC
Confidence            9999999999998886532   367788888999999999999987   8999999999999999999999999998642


Q ss_pred             ccccc-c----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINS-V----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~-~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ..... .    +   +..++......++.++|||||||++|||++|+.||.....  ......+...  ...+.     .
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~--~~~~~-----~  217 (321)
T cd05603         147 VEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV--SQMYDNILHK--PLQLP-----G  217 (321)
T ss_pred             CCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH--HHHHHHHhcC--CCCCC-----C
Confidence            11111 0    0   0111111123456689999999999999999999864322  1111222111  01110     1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                      ..    ...+.+++.+|++.||.+||+..
T Consensus       218 ~~----~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         218 GK----TVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CC----CHHHHHHHHHHccCCHhhcCCCC
Confidence            11    12367889999999999999764

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.98  E-value=1.7e-31  Score=280.06  Aligned_cols=244  Identities=20%  Similarity=0.337  Sum_probs=178.7

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh----------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK----------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      |...+.||+|+||.||+|.. .+|+.||+|.++...          ....+.+.+|+.++++++|||++++++++...+ 
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-   81 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE-   81 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC-
Confidence            55678999999999999985 468999999875321          112356788999999999999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             ..++||||+++|+|.+++++..   .+++..+..++.+++.|+.|||+.   +++||||||+||+++.++.+|
T Consensus        82 -------~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~  148 (272)
T cd06629          82 -------YLSIFLEYVPGGSIGSCLRTYG---RFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICK  148 (272)
T ss_pred             -------ceEEEEecCCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEE
Confidence                   6899999999999999987652   488888999999999999999987   899999999999999999999


Q ss_pred             EecCCCCcccccccccc----------cCCCCCCcc--cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc
Q 004232          634 LSDYGLSIVSEDINSVG----------GKQEDPNSW--EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS  701 (766)
Q Consensus       634 l~DFGla~~~~~~~~~~----------~~~~~~~~~--~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~  701 (766)
                      ++|||++..........          ...++....  ..++.++||||||+++||+++|..|+.....  .........
T Consensus       149 l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~  226 (272)
T cd06629         149 ISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA--IAAMFKLGN  226 (272)
T ss_pred             EeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch--HHHHHHhhc
Confidence            99999986543221100          001111011  1256789999999999999999999853221  111111111


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+ .+.....    ....+.+++.+||..+|++||+|+||++.
T Consensus       227 ~~~~~~~-~~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         227 KRSAPPI-PPDVSMN----LSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             cccCCcC-Ccccccc----CCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            1111111 1111111    12347788999999999999999999763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.98  E-value=1.5e-31  Score=285.55  Aligned_cols=247  Identities=16%  Similarity=0.206  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++.. +++.||+|.+....   ....+.+.+|+++++.++||||+++++.+...+      
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~------   74 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKR------   74 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCC------
Confidence            46888899999999999999854 68899999987543   233467888999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++....   .+++.....++.+++.|++|||+.   +++||||||+||+++.++.+|++|||
T Consensus        75 --~~~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg  146 (305)
T cd05609          75 --HLCMVMEYVEGGDCATLLKNIG---ALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFG  146 (305)
T ss_pred             --EEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCC
Confidence              6899999999999999997543   478888889999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc--------------------c---ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH
Q 004232          639 LSIVSEDINS--------------------V---GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE  695 (766)
Q Consensus       639 la~~~~~~~~--------------------~---~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~  695 (766)
                      +++.......                    .   ....++.......+.++|||||||++|||++|+.|+.....  ...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~--~~~  224 (305)
T cd05609         147 LSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP--EEL  224 (305)
T ss_pred             CccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHH
Confidence            9863210000                    0   00011111123455689999999999999999999863321  111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .......    ....+......    ...+.+++.+||+.+|++||++.++.+.|+..
T Consensus       225 ~~~~~~~----~~~~~~~~~~~----~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~  274 (305)
T cd05609         225 FGQVISD----DIEWPEGDEAL----PADAQDLISRLLRQNPLERLGTGGAFEVKQHR  274 (305)
T ss_pred             HHHHHhc----ccCCCCccccC----CHHHHHHHHHHhccChhhccCccCHHHHHhCc
Confidence            1111111    11111111111    12367899999999999999987777777653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=3.1e-32  Score=288.67  Aligned_cols=245  Identities=22%  Similarity=0.324  Sum_probs=189.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|+..+++|+|+||.++..+. .++..+++|.+....  ...++....|+.++++++|||||.+.+.+.+.+      
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~------   76 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDG------   76 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCC------
Confidence            35688889999999999998874 357789999987544  333557788999999999999999999988764      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ...++||+|++||++.+.+.+.+ +..++.......+.|+..|+.|||+.   .|+|||||+.||++..+..+|++|||
T Consensus        77 -~~l~Ivm~Y~eGg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfG  151 (426)
T KOG0589|consen   77 -QLLCIVMEYCEGGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFG  151 (426)
T ss_pred             -ceEEEEEeecCCCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchh
Confidence             23899999999999999998765 34577788899999999999999976   79999999999999999999999999


Q ss_pred             CCcccccccccc-cCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSVG-GKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~~-~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +|+......... +..++|       ..-..+..|+|+||+||++|||++=+++|....  ....+.++..     ...+
T Consensus       152 laK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~--m~~Li~ki~~-----~~~~  224 (426)
T KOG0589|consen  152 LAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN--MSELILKINR-----GLYS  224 (426)
T ss_pred             hhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc--hHHHHHHHhh-----ccCC
Confidence            998865443111 111122       223567889999999999999999999987433  2222222221     1122


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      |.. .    .....+..++..|++.+|..||++.+++.+
T Consensus       225 Plp-~----~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  225 PLP-S----MYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             CCC-c----cccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            211 1    112336788899999999999999999987

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.98  E-value=1.7e-31  Score=278.37  Aligned_cols=248  Identities=19%  Similarity=0.292  Sum_probs=183.2

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||++.. .++..||+|.++..  .....+++..|++++++++||||+++++++....+      .
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~------~   74 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSN------Q   74 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCC------C
Confidence            477788999999999999985 46889999988643  23445678899999999999999999998875431      3


Q ss_pred             eEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGV--IPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      ..+++|||+++|+|.+++... .....+++.....++.+++.|++|||...  ..+++||||||+||++++++.+|++||
T Consensus        75 ~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~  154 (265)
T cd08217          75 TLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDF  154 (265)
T ss_pred             EEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecc
Confidence            579999999999999998653 22345899999999999999999999321  238999999999999999999999999


Q ss_pred             CCCcccccccc-c----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINS-V----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~-~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++........ .    +   ..+++.......+.++||||||+++|||++|+.|+.....  ......+. ......  
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~-~~~~~~--  229 (265)
T cd08217         155 GLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ--LQLASKIK-EGKFRR--  229 (265)
T ss_pred             cccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH--HHHHHHHh-cCCCCC--
Confidence            99876543221 0    0   0111111122345678999999999999999999864331  11111111 111111  


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         .    +......+.+++.+|++.+|++||++.+|+++
T Consensus       230 ---~----~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         230 ---I----PYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ---C----ccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence               1    11122347789999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.98  E-value=8.8e-32  Score=293.83  Aligned_cols=256  Identities=17%  Similarity=0.205  Sum_probs=180.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|+..+.||+|+||.||++.. ..++.||||++...  .....+.+.+|+.+++.++||||+++++++.......  
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~--   92 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLE--   92 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccc--
Confidence            456899999999999999999985 46889999998653  2334567888999999999999999999886543111  


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+++ ++.+.+..     .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        93 ~~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Df  163 (355)
T cd07874          93 EFQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF  163 (355)
T ss_pred             ccceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeC
Confidence            12357999999976 56666542     377888889999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---------
Q 004232          638 GLSIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---------  701 (766)
Q Consensus       638 Gla~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---------  701 (766)
                      |+++........    +   +..++......++.++|||||||++|||++|+.||......  ..+..+..         
T Consensus       164 g~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~  241 (355)
T cd07874         164 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI--DQWNKVIEQLGTPCPEF  241 (355)
T ss_pred             cccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHH
Confidence            999754322111    1   01111111234566899999999999999999998643211  11100000         


Q ss_pred             -------------c-cCccccccccc-----cC---CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 -------------Q-EGRQRLVDPVV-----MA---TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 -------------~-~~~~~~~d~~~-----~~---~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                   . .....+..+..     ..   .........+.+++.+|++.||++|||+.|+++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         242 MKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence                         0 00000000000     00   0000112346799999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.98  E-value=1.5e-31  Score=288.36  Aligned_cols=233  Identities=19%  Similarity=0.279  Sum_probs=167.5

Q ss_pred             CceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHH-HHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRL-DLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~-~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||+||+|+.. +++.||+|++....   ....+.+..|. .+++.++||||+++++++.+.+        ..+
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~--------~~~   72 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD--------KLY   72 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCC--------eEE
Confidence            36899999999999864 67889999986532   12233444444 4577899999999999887653        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|.+++....   .+.......++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        73 lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~  146 (325)
T cd05602          73 FVLDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKEN  146 (325)
T ss_pred             EEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCccc
Confidence            9999999999999887543   366777788999999999999997   8999999999999999999999999998643


Q ss_pred             ccccc-c---ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINS-V---GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~-~---~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ..... .   .++    .++......++.++|||||||++|||++|+.||.....  ...+..+....  .. ..+.   
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~~--~~-~~~~---  218 (325)
T cd05602         147 IEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--AEMYDNILNKP--LQ-LKPN---  218 (325)
T ss_pred             ccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH--HHHHHHHHhCC--cC-CCCC---
Confidence            21110 0   011    11111123456689999999999999999999864322  22222221111  00 1111   


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       .+    ..+.+++.+|++.||.+||+..+.+.
T Consensus       219 -~~----~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         219 -IT----NSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             -CC----HHHHHHHHHHcccCHHHCCCCCCCHH
Confidence             11    23678889999999999998875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.98  E-value=2.2e-31  Score=278.16  Aligned_cols=248  Identities=21%  Similarity=0.346  Sum_probs=184.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||.|+||.||+|.. .++..+|+|++.... ....+.+.+|+++++.++|+||+++++.+....        
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   72 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGD--------   72 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCC--------
Confidence            4688899999999999999985 468899999986533 235678999999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+++++|.++++...+...+++.....++.+++.|++|||+.   +++||||||+||++++++.+|++|||++
T Consensus        73 ~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~  149 (267)
T cd06610          73 ELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVS  149 (267)
T ss_pred             EEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchH
Confidence            7899999999999999997654334588999999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccc--------c----CCCCCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          641 IVSEDINSVG--------G----KQEDPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       641 ~~~~~~~~~~--------~----~~~~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      ..........        +    ..++... ....+.++|||||||++|||++|+.|+.....  ........... ...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~--~~~~~~~~~~~-~~~  226 (267)
T cd06610         150 ASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP--MKVLMLTLQND-PPS  226 (267)
T ss_pred             HHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh--hhhHHHHhcCC-CCC
Confidence            5543221110        0    0011011 12456689999999999999999999864321  11111111110 001


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +....    ........+.+++.+||+.||++||++.||++
T Consensus       227 ~~~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         227 LETGA----DYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cCCcc----ccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            10000    00011234678999999999999999999975

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.98  E-value=1e-31  Score=286.37  Aligned_cols=253  Identities=19%  Similarity=0.227  Sum_probs=178.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|.+.+.||+|+||.||+|+.. +++.||+|.++... ......+.+|+.++++++||||+++++++.+.+        
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~--------   77 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK--------   77 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCC--------
Confidence            46888899999999999999864 68899999986433 223456778999999999999999999988653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ ++|.+++.+..  ..+++.....++.+++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        78 ~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~  151 (301)
T cd07873          78 SLTLVFEYLD-KDLKQYLDDCG--NSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLA  151 (301)
T ss_pred             eEEEEEeccc-cCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcch
Confidence            6899999998 58988886543  3478888999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhh----------
Q 004232          641 IVSEDINSV-----GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLN----------  700 (766)
Q Consensus       641 ~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~----------  700 (766)
                      .........     .... ..|..   ....+.++|||||||++|||+||+.||....... ...+....          
T Consensus       152 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
T cd07873         152 RAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPG  231 (301)
T ss_pred             hccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchh
Confidence            643221110     0000 01111   1224557899999999999999999986432211 11111100          


Q ss_pred             --cccCccccccccccCCC----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          701 --SQEGRQRLVDPVVMATS----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       701 --~~~~~~~~~d~~~~~~~----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ........-.+......    .......+.+++.+|++.||.+|||++||++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         232 ILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             hhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence              00000000001000000    00012246789999999999999999999863

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.98  E-value=2.7e-31  Score=281.07  Aligned_cols=254  Identities=19%  Similarity=0.235  Sum_probs=184.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|+..+.||.|+||.||+|.. .+++.+|+|.+.... .....++.+|++++++++||||++++++|.+...      .
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~------~   74 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESS------S   74 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCC------C
Confidence            3577889999999999999996 468899999987543 2445778999999999999999999999876431      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      .+++||||+++|+|.+++.... ....+++.....++.+++.||+|||+.   +++||||+|+||++++++.+||+|||+
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~  151 (287)
T cd06621          75 SIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGV  151 (287)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccc
Confidence            6899999999999998875422 223478888999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccc------cccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc---chHHHHhhhhcccCcccccc
Q 004232          640 SIVSEDINS------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ---FLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       640 a~~~~~~~~------~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~---~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +........      .....++......++.++|||||||++|||+||+.|+.....   ...+....+... ....+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  230 (287)
T cd06621         152 SGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM-PNPELKD  230 (287)
T ss_pred             cccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC-Cchhhcc
Confidence            854322110      011111111223456789999999999999999999874421   111111111110 0111111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ... .  .......+.+++.+||+.+|.+||||.||++.
T Consensus       231 ~~~-~--~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         231 EPG-N--GIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             CCC-C--CCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            100 0  00112347799999999999999999999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.8e-31  Score=288.35  Aligned_cols=246  Identities=18%  Similarity=0.281  Sum_probs=176.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++.. +++.||||++....   ....+.+.+|+.++..++||||+++++++.+.+      
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~------   74 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDEN------   74 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCC------
Confidence            46888999999999999999854 68999999986422   233456888999999999999999999888653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..  ..+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg  147 (331)
T cd05597          75 --NLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFG  147 (331)
T ss_pred             --eEEEEEecCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECC
Confidence              7899999999999999997532  2478888889999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc------ccCC-CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          639 LSIVSEDINSV------GGKQ-EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~------~~~~-~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ++.........      +... ..|..       ...++.++|||||||++|||++|+.||....  ..+....+.....
T Consensus       148 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~--~~~~~~~i~~~~~  225 (331)
T cd05597         148 SCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAES--LVETYGKIMNHKE  225 (331)
T ss_pred             ceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCC--HHHHHHHHHcCCC
Confidence            98543221110      1100 01111       1234568999999999999999999986432  1222222221111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhcc--CCCCCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCIC--SESWSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~--~~p~~RPs~~ev~~~  749 (766)
                      ...+.+.  ....+.    .+.+++.+|+.  .++..||+++++++.
T Consensus       226 ~~~~~~~--~~~~~~----~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         226 HFQFPPD--VTDVSE----EAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             cccCCCc--cCCCCH----HHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            1111111  111122    24556666554  444458899888766

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.97  E-value=1.2e-31  Score=283.80  Aligned_cols=257  Identities=19%  Similarity=0.215  Sum_probs=175.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhC---CCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +|++.+.||+|+||+||+|+.. +++.||+|.++...  ......+.+|+++++++   +||||+++++++.+....   
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~---   77 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTD---   77 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCC---
Confidence            3777889999999999999854 68999999886532  11233456677766655   799999999988754211   


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+++ +|..++.... ...+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        78 ~~~~~~lv~e~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~df  152 (288)
T cd07863          78 RETKVTLVFEHVDQ-DLRTYLDKVP-PPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADF  152 (288)
T ss_pred             CCceEEEEEccccc-CHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcc
Confidence            11358999999985 8888886543 23488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhccc----Cc
Q 004232          638 GLSIVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQE----GR  705 (766)
Q Consensus       638 Gla~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~----~~  705 (766)
                      |++.........       ....++......++.++|||||||++|||++|++||...... ....+.......    ..
T Consensus       153 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T cd07863         153 GLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWP  232 (288)
T ss_pred             CccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCc
Confidence            998654322111       011111112234567899999999999999999988643221 111111110000    00


Q ss_pred             c------ccccccccC---CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 Q------RLVDPVVMA---TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~------~~~d~~~~~---~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .      ....+....   ....+....+.+++.+|++.||++|||+.|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         233 RDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             ccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0      000000000   000011234678999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=2.7e-31  Score=277.49  Aligned_cols=242  Identities=21%  Similarity=0.286  Sum_probs=177.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-----hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-----KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|++.+.||+|+||.||+|+. .+|..||||.+...     .....+.+.+|+.++++++||||+++++++.+...   
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~---   78 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPME---   78 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCC---
Confidence            4688899999999999999985 46899999987532     12335678899999999999999999998766431   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..+++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +++||||||+||+++.++.+||+|
T Consensus        79 ---~~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~D  149 (265)
T cd06652          79 ---RTLSIFMEHMPGGSIKDQLKSYG---ALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGD  149 (265)
T ss_pred             ---ceEEEEEEecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECc
Confidence               35789999999999999987543   377888899999999999999987   899999999999999999999999


Q ss_pred             CCCCccccccc-------cc----ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDIN-------SV----GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~-------~~----~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||++.......       ..    .+..++.......+.++|||||||++|||++|+.|+.....  ...........  
T Consensus       150 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~~--  225 (265)
T cd06652         150 FGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEA--MAAIFKIATQP--  225 (265)
T ss_pred             CccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccch--HHHHHHHhcCC--
Confidence            99986432110       00    01111111122345678999999999999999999863211  11111111111  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ..+..    +......+.+++.+|+. +|++||+++||++
T Consensus       226 ---~~~~~----~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         226 ---TNPVL----PPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             ---CCCCC----chhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence               01111    11222346678888985 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.3e-31  Score=289.09  Aligned_cols=259  Identities=17%  Similarity=0.307  Sum_probs=180.5

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|+..+.||+|+||.||+|+. .++..||||++....  ....+.+.+|++++++++||||+++++++.......  
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--   90 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE--   90 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc--
Confidence            456788899999999999999985 578899999987532  233456778999999999999999999886543111  


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++++|++ +++|.+++...    .+++.....++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        91 ~~~~~~~~~~~~-~~~l~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Df  162 (343)
T cd07878          91 NFNEVYLVTNLM-GADLNNIVKCQ----KLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDF  162 (343)
T ss_pred             ccCcEEEEeecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCC
Confidence            123579999988 77898877532    388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc--ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccC------
Q 004232          638 GLSIVSEDINSV--GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEG------  704 (766)
Q Consensus       638 Gla~~~~~~~~~--~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~------  704 (766)
                      |+++........  +... ..|.   ....++.++|||||||++|||++|+.||...... ....+........      
T Consensus       163 g~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T cd07878         163 GLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKK  242 (343)
T ss_pred             ccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence            998754332111  1100 1111   1133566899999999999999999998643211 0111110000000      


Q ss_pred             -----cccccccc-ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 -----RQRLVDPV-VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 -----~~~~~d~~-~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ........ .......     .....+.+++.+|++.||.+|||+.|++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         243 ISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             cchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                 00000000 0000000     011236789999999999999999999865

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.97  E-value=3.3e-31  Score=278.90  Aligned_cols=238  Identities=19%  Similarity=0.344  Sum_probs=179.7

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      |+..+.||+|+||.||+|.. .++..||+|...... ....+.+.+|+.++++++||||+++++++.+..        ..
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~   77 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT--------KL   77 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCC--------eE
Confidence            66678899999999999985 468899999876433 334567889999999999999999999988753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++...    .+++.....++.+++.|++|||+.   +++|+||||+||+++.++.++++|||++..
T Consensus        78 ~lv~e~~~~~~l~~~i~~~----~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~  150 (277)
T cd06641          78 WIIMEYLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQ  150 (277)
T ss_pred             EEEEEeCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeeccccee
Confidence            9999999999999988642    378999999999999999999997   899999999999999999999999999865


Q ss_pred             ccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          643 SEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       643 ~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      .......     +   ...++.......+.++|||||||++|||++|..|+......  .....+.. ...     +...
T Consensus       151 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~-~~~-----~~~~  222 (277)
T cd06641         151 LTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM--KVLFLIPK-NNP-----PTLE  222 (277)
T ss_pred             cccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH--HHHHHHhc-CCC-----CCCC
Confidence            4322110     0   01111111233456789999999999999999998632211  11111111 111     1111


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...    ...+.+++.+||+.+|.+||+|.++++.
T Consensus       223 ~~~----~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         223 GNY----SKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             ccc----CHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            111    2336788999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=1.3e-31  Score=282.66  Aligned_cols=258  Identities=21%  Similarity=0.355  Sum_probs=186.7

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeec
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCID  550 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~  550 (766)
                      .++.++..+.+.|++.+.||+|+||.||+|+. .+++.||+|.+.... ....++..|+.+++++ +||||+++++++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            34566666778899999999999999999986 468899999886543 2345688899999998 69999999999865


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      ....  ......+++|||+++|+|.+++.... ...+++.....++.|++.|++|||+.   +|+||||||+||++++++
T Consensus        85 ~~~~--~~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~  158 (282)
T cd06636          85 KSPP--GHDDQLWLVMEFCGAGSVTDLVKNTK-GNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENA  158 (282)
T ss_pred             cccc--CCCCEEEEEEEeCCCCcHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCC
Confidence            3210  01246899999999999999886543 23477888889999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc--------ccCCCCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          631 IAKLSDYGLSIVSEDINSV--------GGKQEDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      .+||+|||++.........        .+.+++...     ...++.++|||||||++|||+||+.|+......  ....
T Consensus       159 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~--~~~~  236 (282)
T cd06636         159 EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM--RALF  236 (282)
T ss_pred             CEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH--hhhh
Confidence            9999999998643221100        011111100     123455799999999999999999998532211  1111


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+.. ..     .+....   ......+.+++.+||..||.+||++.||++
T Consensus       237 ~~~~-~~-----~~~~~~---~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         237 LIPR-NP-----PPKLKS---KKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             hHhh-CC-----CCCCcc---cccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            1100 00     010000   011234778999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=3.4e-31  Score=283.17  Aligned_cols=242  Identities=24%  Similarity=0.328  Sum_probs=179.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..|+..+.||+|+||.||+|+.. +++.||+|++....   ....+++.+|++++++++||||++++|+|.+.+      
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~------   88 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH------   88 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC------
Confidence            34777889999999999999864 68999999886432   234567889999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++|+||++ |++.+++....  ..+++..+..++.|++.||.|||+.   +|+||||+|+||++++++.+||+|||
T Consensus        89 --~~~lv~e~~~-g~l~~~~~~~~--~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg  160 (307)
T cd06607          89 --TAWLVMEYCL-GSASDILEVHK--KPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFG  160 (307)
T ss_pred             --eEEEEHHhhC-CCHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecC
Confidence              6899999998 57766665332  2488999999999999999999987   89999999999999999999999999


Q ss_pred             CCcccccccccccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVGGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ++.............  ..|..     ....+.++|||||||++|||+||+.|+......  .....+...+ .     +
T Consensus       161 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~--~~~~~~~~~~-~-----~  232 (307)
T cd06607         161 SASLVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQND-S-----P  232 (307)
T ss_pred             cceecCCCCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH--HHHHHHhcCC-C-----C
Confidence            986543322111110  11111     123556899999999999999999998633211  1111111100 0     0


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..   ........+.+++.+||+.+|++||+|.+|+..
T Consensus       233 ~~---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         233 TL---SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             CC---CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            00   011122347889999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.97  E-value=1.4e-31  Score=293.27  Aligned_cols=255  Identities=17%  Similarity=0.221  Sum_probs=179.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+++. ..++.||||++...  .....+.+.+|+.+++.++||||+++++++.......  .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~--~  100 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE--E  100 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccc--c
Confidence            46789999999999999999985 46889999998653  2334567888999999999999999999876542110  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+++ ++...+..     .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       101 ~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG  171 (364)
T cd07875         101 FQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  171 (364)
T ss_pred             cCeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCC
Confidence            1357999999986 67666642     277888899999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---------
Q 004232          639 LSIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---------  702 (766)
Q Consensus       639 la~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---------  702 (766)
                      +++........    +   +..++......++.++|||||||++|||++|+.||......  ..+..+...         
T Consensus       172 ~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~  249 (364)
T cd07875         172 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI--DQWNKVIEQLGTPCPEFM  249 (364)
T ss_pred             CccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHhcCCCCHHHH
Confidence            99754332111    0   01111111234566899999999999999999998643221  111111000         


Q ss_pred             --------------cCcc-----cccccccc---CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 --------------EGRQ-----RLVDPVVM---ATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 --------------~~~~-----~~~d~~~~---~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                    ....     +.......   ..........+.+++.+|++.||.+|||+.|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         250 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                          0000     00000000   00000112346799999999999999999999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.97  E-value=3.2e-31  Score=275.30  Aligned_cols=242  Identities=26%  Similarity=0.458  Sum_probs=181.3

Q ss_pred             CCcCCceecCCceeEEEEEecC-----CceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLEN-----GTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |++.+.||+|+||.||+++...     +..||+|.+...... ..+.+..|+.++++++||||+++++++.+.+      
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------   74 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEE------   74 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC------
Confidence            3456889999999999998653     488999999765433 5678999999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..+++|||+++++|.+++..... ..+++..+..++.+++.|++|||+.   +++||||||+||++++++.+|++|||
T Consensus        75 --~~~~i~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg  148 (258)
T smart00219       75 --PLMIVMEYMEGGDLLDYLRKNRP-KELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFG  148 (258)
T ss_pred             --eeEEEEeccCCCCHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccC
Confidence              68999999999999999875432 1278999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccccc---------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccc
Q 004232          639 LSIVSEDINSVGG---------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       639 la~~~~~~~~~~~---------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ++...........         ..++.......+.++||||+||+++||++ |..|+.....  ......+.. ..... 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~--~~~~~~~~~-~~~~~-  224 (258)
T smart00219      149 LSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN--EEVLEYLKK-GYRLP-  224 (258)
T ss_pred             CceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHhc-CCCCC-
Confidence            9865433211110         01111112345678999999999999999 7777753221  111111111 11111 


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       .+.   .    ....+.+++.+|+..+|++|||+.|+++.|
T Consensus       225 -~~~---~----~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      225 -KPE---N----CPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -CCC---c----CCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence             111   1    123477899999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.9e-31  Score=291.08  Aligned_cols=185  Identities=18%  Similarity=0.314  Sum_probs=147.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ...+|++.+.||+|+||.||+|+.. ++..||+|.....      ....|+.++++++||||+++++++.+..       
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------  130 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGA-------  130 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCC-------
Confidence            3457999999999999999999865 5788999975432      2346889999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|+||+. |+|.+++....  ..++|..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       131 -~~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~  203 (357)
T PHA03209        131 -ITCMVLPHYS-SDLYTYLTKRS--RPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGA  203 (357)
T ss_pred             -eeEEEEEccC-CcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCcc
Confidence             6799999995 68888886532  3589999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          640 SIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       640 a~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      ++........    +   +..++......++.++|||||||++|||+++..++
T Consensus       204 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        204 AQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            8653221110    1   11122122234567899999999999999976554

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.97  E-value=2.4e-31  Score=280.56  Aligned_cols=246  Identities=22%  Similarity=0.364  Sum_probs=176.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHH-HHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDL-LAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~-l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|+++... .....++..|+.+ ++..+||||+++++++...+       
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~-------   73 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREG-------   73 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCC-------
Confidence            46888899999999999999864 69999999987542 2233445556654 66779999999999997653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ..++||||++ |+|.+++... .....+++.....++.|++.||+|||++.  +++||||||+||+++.++.+||+|||
T Consensus        74 -~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg  149 (283)
T cd06617          74 -DVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFG  149 (283)
T ss_pred             -cEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecc
Confidence             6899999997 6888777542 22345889999999999999999999852  78999999999999999999999999


Q ss_pred             CCccccccccc----ccCC-CCCCcc------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          639 LSIVSEDINSV----GGKQ-EDPNSW------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       639 la~~~~~~~~~----~~~~-~~~~~~------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      ++.........    +... ..|...      ...+.++|||||||++|||++|+.|+....... ........ .....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~-~~~~~  227 (283)
T cd06617         150 ISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPF-QQLKQVVE-EPSPQ  227 (283)
T ss_pred             cccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCH-HHHHHHHh-cCCCC
Confidence            98654321110    1100 111111      234568999999999999999999986322111 11111111 11111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +...    ..+    ..+.+++.+||+.+|++||++.+|+..
T Consensus       228 ~~~~----~~~----~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         228 LPAE----KFS----PEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             CCcc----ccC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1111    111    236789999999999999999999863

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.97  E-value=4.9e-31  Score=273.75  Aligned_cols=241  Identities=17%  Similarity=0.273  Sum_probs=180.6

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||++.. .+++.+|||.+....  ....+.+.+|++++++++||||+++++.+...        +
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~--------~   72 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLED--------K   72 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecC--------C
Confidence            477788999999999999985 478899999986542  33457789999999999999999999987754        3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~kl~DFGl  639 (766)
                      ..++||||+++++|.+++.+.. ...+++..+..++.+++.|++|||+.   +++||||||+||+++++ +.+|++|||+
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~  148 (256)
T cd08220          73 ALMIVMEYAPGGTLAEYIQKRC-NSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGI  148 (256)
T ss_pred             EEEEEEecCCCCCHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCC
Confidence            6899999999999999997643 23578999999999999999999997   89999999999999854 5689999999


Q ss_pred             Cccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +.........       ....++.......+.++|||||||++|||++|+.|+.....  ......... .....+.+  
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~--  223 (256)
T cd08220         149 SKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL--PALVLKIMS-GTFAPISD--  223 (256)
T ss_pred             ceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch--HHHHHHHHh-cCCCCCCC--
Confidence            8654332111       11112211223356689999999999999999999864322  111111111 11111111  


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         .    ....+.+++.+||+.+|++||++.|+++
T Consensus       224 ---~----~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         224 ---R----YSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ---C----cCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               1    1123678899999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1e-31  Score=309.67  Aligned_cols=253  Identities=21%  Similarity=0.409  Sum_probs=190.2

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceee
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCI  549 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~  549 (766)
                      ...++..+.+.+|+|.||.|++|...        ....||||.++... ....+.+..|+++|+.+ +|||||.++|+|.
T Consensus       293 ~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t  372 (609)
T KOG0200|consen  293 IPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACT  372 (609)
T ss_pred             echhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeec
Confidence            33444555679999999999999742        14579999997643 35578899999999998 5999999999999


Q ss_pred             cCCCCCCcCcceEEEEEEccCCCChhhhhhcCC-------C----C--CCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 004232          550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-------P----G--KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFN  616 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-------~----~--~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH  616 (766)
                      ..+        ..++|+||+++|+|..++++.+       .    .  ..++..+.+.++.|||.||+||++.   ++||
T Consensus       373 ~~~--------~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vH  441 (609)
T KOG0200|consen  373 QDG--------PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVH  441 (609)
T ss_pred             cCC--------ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---Cccc
Confidence            843        6899999999999999998765       0    0  2378889999999999999999997   7899


Q ss_pred             CCCCCCceEEcCCCcEEEecCCCCcccccc--cc-cccCCCCCCccc--------CCCCCCCEeehhHHHHHHhc-CCCc
Q 004232          617 NRVKTNNILLNEHRIAKLSDYGLSIVSEDI--NS-VGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVA-GPSV  684 (766)
Q Consensus       617 rdlk~~NILld~~~~~kl~DFGla~~~~~~--~~-~~~~~~~~~~~~--------~~~~~~DV~SfGvil~Ellt-G~~p  684 (766)
                      |||.++|||+.++..+||+|||+|+.....  .. ....+..|..|.        .++.++|||||||+|||++| |..|
T Consensus       442 RDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~P  521 (609)
T KOG0200|consen  442 RDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTP  521 (609)
T ss_pred             hhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999753321  11 111111344443        45679999999999999999 5677


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      +..  ......+.+....+.  ++..|.       .+..++.++++.||+.+|++||+|.|+++.++...
T Consensus       522 Yp~--~~~~~~l~~~l~~G~--r~~~P~-------~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  522 YPG--IPPTEELLEFLKEGN--RMEQPE-------HCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             CCC--CCcHHHHHHHHhcCC--CCCCCC-------CCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence            753  110111111222221  111121       22344789999999999999999999999998853

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.97  E-value=5.7e-31  Score=274.57  Aligned_cols=242  Identities=19%  Similarity=0.339  Sum_probs=180.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .|+..+.||+|+||.||+|... ++..||+|.++....  ...+.+.+|++++++++|+||+++++++...        +
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~--------~   72 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR--------E   72 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC--------C
Confidence            3677789999999999999864 688999999875543  3678899999999999999999999987765        3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+++++|.+++.+..   .+++..+..++.+++.|++|||+.   +++||||||+||++++++.+||+|||++
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~  146 (264)
T cd06626          73 KVYIFMEYCSGGTLEELLEHGR---ILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCA  146 (264)
T ss_pred             EEEEEEecCCCCcHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccc
Confidence            7899999999999999987542   378888999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccccc------------cCCCCCCccc---CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          641 IVSEDINSVG------------GKQEDPNSWE---MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       641 ~~~~~~~~~~------------~~~~~~~~~~---~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ..........            ...++.....   ..+.++||||||+++||+++|+.||........ ....+.. ...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~-~~~~~~~-~~~  224 (264)
T cd06626         147 VKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQ-IMFHVGA-GHK  224 (264)
T ss_pred             cccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHH-HHHHHhc-CCC
Confidence            6543221110            0111111111   256689999999999999999999864321111 1111111 111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+.+     ..  .....+.+++.+||+.+|.+||++.|++.
T Consensus       225 ~~~~~-----~~--~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         225 PPIPD-----SL--QLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CCCCc-----cc--ccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            11111     00  01223568899999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.97  E-value=2.5e-31  Score=282.19  Aligned_cols=242  Identities=20%  Similarity=0.338  Sum_probs=182.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|+..+.||+|+||.||+|.. .++..||+|.+........+.+.+|+.++++++||||++++++|...+        .
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--------~   90 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGD--------E   90 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCC--------c
Confidence            5688889999999999999984 468899999987555555677889999999999999999999988753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||+++|+|.+++.+.    .+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++.
T Consensus        91 ~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~  163 (293)
T cd06647          91 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (293)
T ss_pred             EEEEEecCCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCccee
Confidence            89999999999999998653    378899999999999999999997   89999999999999999999999999875


Q ss_pred             ccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .........        ...++.......+.++|||||||++||+++|+.||......  .....+.. .......    
T Consensus       164 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~--~~~~~~~~-~~~~~~~----  236 (293)
T cd06647         164 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL--RALYLIAT-NGTPELQ----  236 (293)
T ss_pred             cccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChh--hheeehhc-CCCCCCC----
Confidence            433211110        01111111233456899999999999999999998643221  11110100 0000000    


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ........+.+++.+||+.+|++||++++++.+
T Consensus       237 ---~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         237 ---NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ---CccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               011112346789999999999999999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=2.4e-31  Score=282.20  Aligned_cols=237  Identities=20%  Similarity=0.316  Sum_probs=177.4

Q ss_pred             CCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          488 SAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ...||+|+||.||++.. .++..||||.+........+.+.+|+.++++++||||+++++.+...+        ..++||
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~--------~~~lv~   98 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGD--------ELWVVM   98 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCC--------eEEEEE
Confidence            45799999999999985 468899999987665556677899999999999999999999987653        689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++++|.+++...    .+++.....++.+++.||+|||+.   +|+||||||+||++++++.+||+|||++......
T Consensus        99 e~~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~  171 (292)
T cd06658          99 EFLEGGALTDIVTHT----RMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE  171 (292)
T ss_pred             eCCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccc
Confidence            999999999988542    378899999999999999999997   8999999999999999999999999998543221


Q ss_pred             ccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCC
Q 004232          647 NSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS  718 (766)
Q Consensus       647 ~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  718 (766)
                      ...     +   ...++.......+.++|||||||++|||++|+.|+......  .....+.. .....+.+..      
T Consensus       172 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~~~------  242 (292)
T cd06658         172 VPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPL--QAMRRIRD-NLPPRVKDSH------  242 (292)
T ss_pred             cccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHh-cCCCcccccc------
Confidence            110     0   01111111123456899999999999999999998643221  11111110 0001111100      


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          719 LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       719 ~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       .....+.+++.+||+.||.+|||++||++.
T Consensus       243 -~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         243 -KVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             -ccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence             011236688899999999999999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=3.5e-31  Score=286.04  Aligned_cols=246  Identities=17%  Similarity=0.269  Sum_probs=177.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++.. +++.||+|.+....   ....+.+.+|+.++..++|+||+++++++.+.+      
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~------   74 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDEN------   74 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC------
Confidence            46888999999999999999864 68899999986532   223456788999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..|+||||+++|+|.+++.+..  ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        75 --~~~lv~Ey~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG  147 (331)
T cd05624          75 --YLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFG  147 (331)
T ss_pred             --EEEEEEeCCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEecc
Confidence              7899999999999999997632  2478888889999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-----ccCC--CCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          639 LSIVSEDINSV-----GGKQ--EDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~-----~~~~--~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +++........     .++.  ..|...       ..++.++|||||||++|||++|+.||.....  ......+.....
T Consensus       148 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~--~~~~~~i~~~~~  225 (331)
T cd05624         148 SCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESL--VETYGKIMNHEE  225 (331)
T ss_pred             ceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCH--HHHHHHHHcCCC
Confidence            98654321110     0110  011111       2345689999999999999999999864322  122222221111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~  749 (766)
                      ..++  |......    ...+.+++.+|++.++++  |++++++.+.
T Consensus       226 ~~~~--p~~~~~~----~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         226 RFQF--PSHITDV----SEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             cccC--CCccccC----CHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            1111  1111111    123667888888765544  5678888654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2.1e-31  Score=296.99  Aligned_cols=183  Identities=20%  Similarity=0.289  Sum_probs=146.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..|.+.+.||+|+||.||+|+.. .++.||||...      ...+.+|++++++++|||||++++++...+        .
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~--------~  234 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGG--------L  234 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECC--------E
Confidence            46888999999999999999865 57889999642      234568999999999999999999988753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+. |+|..++....  ..++|..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       235 ~~lv~e~~~-~~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~  308 (461)
T PHA03211        235 TCLVLPKYR-SDLYTYLGARL--RPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAAC  308 (461)
T ss_pred             EEEEEEccC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCce
Confidence            799999995 68888886532  3589999999999999999999997   89999999999999999999999999986


Q ss_pred             cccccccc-------cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          642 VSEDINSV-------GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       642 ~~~~~~~~-------~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      ........       ++   ..++......++.++|||||||++|||++|..++
T Consensus       309 ~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~l  362 (461)
T PHA03211        309 FARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASL  362 (461)
T ss_pred             ecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCc
Confidence            54321110       00   0111111234567899999999999999987654

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=5.6e-31  Score=275.41  Aligned_cols=242  Identities=17%  Similarity=0.278  Sum_probs=179.3

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +|+..+.||+|+||.||+|.. .+++.||+|.+....      ....+.+.+|++++++++||||+++++++.+.+    
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----   76 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS----   76 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC----
Confidence            467788999999999999984 578999999986432      123567899999999999999999999988753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEe
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLS  635 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~  635 (766)
                          ..++|+||+++++|.+++.+..   .+++.....++.+++.||+|||+.   +++||||||+||+++.++ .+||+
T Consensus        77 ----~~~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~  146 (268)
T cd06630          77 ----HFNLFVEWMAGGSVSHLLSKYG---AFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIA  146 (268)
T ss_pred             ----eEEEEEeccCCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEc
Confidence                6899999999999999987543   478899999999999999999997   899999999999998775 69999


Q ss_pred             cCCCCccccccccc------------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc
Q 004232          636 DYGLSIVSEDINSV------------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ  702 (766)
Q Consensus       636 DFGla~~~~~~~~~------------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~  702 (766)
                      |||.+.........            ....++.......+.++||||+||++|||++|..|+...... ....+......
T Consensus       147 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~  226 (268)
T cd06630         147 DFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASA  226 (268)
T ss_pred             ccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhcc
Confidence            99998554321100            011111111134456899999999999999999998632211 11111111100


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..     .+    ..+......+.+++.+|++.+|++||++.|+++
T Consensus       227 ~~-----~~----~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         227 TT-----AP----SIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CC-----CC----CCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            00     01    111112234778999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=4.3e-31  Score=285.49  Aligned_cols=246  Identities=19%  Similarity=0.291  Sum_probs=176.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+++.. +++.+|+|.+....   ....+.+.+|+.++..++|+||+++++++.+.+      
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~------   74 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDEN------   74 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC------
Confidence            46888899999999999999865 57889999986432   223455888999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..  ..+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        75 --~~~lv~ey~~~g~L~~~l~~~~--~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG  147 (332)
T cd05623          75 --NLYLVMDYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFG  147 (332)
T ss_pred             --EEEEEEeccCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecc
Confidence              7899999999999999997632  2478888889999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc------cccCC-CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          639 LSIVSEDINS------VGGKQ-EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~------~~~~~-~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ++........      .+... ..|..       ...++.++|||||||++|||++|+.||....  .......+.....
T Consensus       148 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~--~~~~~~~i~~~~~  225 (332)
T cd05623         148 SCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES--LVETYGKIMNHKE  225 (332)
T ss_pred             hheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC--HHHHHHHHhCCCc
Confidence            9854321111      01100 11111       1235668999999999999999999986432  2222222221111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCC--CCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSES--WSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p--~~RPs~~ev~~~  749 (766)
                      ...+  |......+    ..+.+++.+|+..++  ..||++.|+++.
T Consensus       226 ~~~~--p~~~~~~s----~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         226 RFQF--PAQVTDVS----EDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             cccC--CCccccCC----HHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            1111  11111111    235667777765544  447899988766

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=3.6e-31  Score=276.37  Aligned_cols=245  Identities=20%  Similarity=0.294  Sum_probs=183.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|+..+.||+|+||.||++... +++.||+|.+.... ....+++.+|++++++++||||+++++++...+        
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--------   72 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNG--------   72 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCC--------
Confidence            35777889999999999999865 68999999987543 344577889999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..++|+||+++++|.+++....  ..++......++.+++.|++|+|+ .   +++||||||+||++++++.+||+|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~  147 (265)
T cd06605          73 DISICMEYMDGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGV  147 (265)
T ss_pred             EEEEEEEecCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeeccc
Confidence            7899999999999999987643  357888889999999999999998 5   899999999999999999999999999


Q ss_pred             Ccccccccc------cccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCc---cchHHHHhhhhcccCcccccc
Q 004232          640 SIVSEDINS------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKG---QFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       640 a~~~~~~~~------~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~---~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +........      .....++......++.++|||||||++|||++|+.|+....   .........+.... .     
T Consensus       148 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~-----  221 (265)
T cd06605         148 SGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEP-P-----  221 (265)
T ss_pred             chhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCC-C-----
Confidence            854322111      01111111122345678999999999999999999986432   11112121111110 0     


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +...   .......+.+++.+||..+|.+||++.|++..
T Consensus       222 ~~~~---~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         222 PRLP---SGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             CCCC---hhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            0000   00022346789999999999999999999754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.97  E-value=4.1e-31  Score=283.88  Aligned_cols=188  Identities=18%  Similarity=0.319  Sum_probs=143.1

Q ss_pred             CCceecCCceeEEEEEec---CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ...||+|+||+||+|+..   +++.||+|.+.....  ...+.+|++++++++||||+++++++.+...      ...++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------~~~~l   77 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHAD------RKVWL   77 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC--cHHHHHHHHHHHhcCCCCCcceeeeEecCCC------cEEEE
Confidence            468999999999999854   467899999865432  3457789999999999999999998875431      36899


Q ss_pred             EEEccCCCChhhhhhcCC------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEE
Q 004232          565 VYEFMSNGNFRTHISENT------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL----NEHRIAKL  634 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----d~~~~~kl  634 (766)
                      ||||+.+ +|.+++....      ....+++.....++.|++.||+|||+.   +|+||||||+|||+    +.++.+||
T Consensus        78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl  153 (317)
T cd07868          78 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI  153 (317)
T ss_pred             EEeccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEE
Confidence            9999875 7877764321      112478888899999999999999997   89999999999999    45678999


Q ss_pred             ecCCCCcccccccc-------cccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          635 SDYGLSIVSEDINS-------VGGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       635 ~DFGla~~~~~~~~-------~~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      +|||+++.......       ..++.  ..|..   ...++.++||||+||++|||+||+.||..
T Consensus       154 ~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~  218 (317)
T cd07868         154 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence            99999965432111       00010  11111   12345678999999999999999999853

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=5e-31  Score=280.52  Aligned_cols=252  Identities=18%  Similarity=0.292  Sum_probs=180.3

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhh-----hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKY-----TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +|+..+.||+|+||.||+|... +|+.||||.+......     ....+..|++++++++||||+++++++.+.      
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~------   74 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHK------   74 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecC------
Confidence            3677789999999999999864 6899999999754322     245567899999999999999999999874      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        +..++||||+ +|+|.+++....  ..+++..+..++.|+++||+|||+.   +++||||||+||+++.++.+||+||
T Consensus        75 --~~~~lv~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~df  146 (298)
T cd07841          75 --SNINLVFEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADF  146 (298)
T ss_pred             --CEEEEEEccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccc
Confidence              3689999999 999999997543  2589999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccccc--------CCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHH-hhhhcc----
Q 004232          638 GLSIVSEDINSVGG--------KQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEEL-DSLNSQ----  702 (766)
Q Consensus       638 Gla~~~~~~~~~~~--------~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~-~~~~~~----  702 (766)
                      |++...........        ..++.. .....+.++|||||||++|||++|.+++....... .... ......    
T Consensus       147 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (298)
T cd07841         147 GLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEEN  226 (298)
T ss_pred             eeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhh
Confidence            99865432211100        001100 11234567899999999999999977765332211 1111 000000    


Q ss_pred             ----cCccccccccccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 ----EGRQRLVDPVVMATSS-----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ----~~~~~~~d~~~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ................     ......+.+++.+||+.+|++|||+.||++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         227 WPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             hhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                0000000000000011     1112457899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PTZ00284 protein kinase; Provisional

Probab=99.97  E-value=1.7e-31  Score=301.99  Aligned_cols=260  Identities=13%  Similarity=0.209  Sum_probs=177.1

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCC------Cccccccee
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP------HLVCLLGHC  548 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hp------niv~l~g~~  548 (766)
                      +++...+++|++.+.||+|+||+||+|.. .+++.||||+++.... ..+++..|++++++++|.      +++++++++
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~-~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPK-YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchh-hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            44455678899999999999999999985 4688999999865322 234566788887777654      588888888


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE  628 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~  628 (766)
                      ....       ...++|||++ +++|.+++.+..   .+++.....++.||+.||+|||+.  .+|+||||||+|||++.
T Consensus       201 ~~~~-------~~~~iv~~~~-g~~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~  267 (467)
T PTZ00284        201 QNET-------GHMCIVMPKY-GPCLLDWIMKHG---PFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMET  267 (467)
T ss_pred             EcCC-------ceEEEEEecc-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEec
Confidence            7543       3689999988 678888887543   488999999999999999999973  27999999999999987


Q ss_pred             CC----------------cEEEecCCCCcccccccc--c---ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          629 HR----------------IAKLSDYGLSIVSEDINS--V---GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       629 ~~----------------~~kl~DFGla~~~~~~~~--~---~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ++                .+||+|||.+........  .   .+..++......++.++|||||||++|||+||+.||+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~  347 (467)
T PTZ00284        268 SDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDT  347 (467)
T ss_pred             CCcccccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            65                499999998754321111  1   11111111223456688999999999999999999974


Q ss_pred             Cccch-HHHHhhhhc-----------c----------cCcccccccccc----CCCC---HHHHHHHHHHHHHhccCCCC
Q 004232          688 KGQFL-QEELDSLNS-----------Q----------EGRQRLVDPVVM----ATSS---LESLSIVISIANKCICSESW  738 (766)
Q Consensus       688 ~~~~~-~~~~~~~~~-----------~----------~~~~~~~d~~~~----~~~~---~~~~~~~~~l~~~C~~~~p~  738 (766)
                      ..... ...+.....           .          .......++...    ....   ...-..+.+|+.+|++.||.
T Consensus       348 ~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~  427 (467)
T PTZ00284        348 HDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQ  427 (467)
T ss_pred             CChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChh
Confidence            33211 111110000           0          000000011000    0000   00123467999999999999


Q ss_pred             CCCCHHHHHHH
Q 004232          739 SRPSFEDILWN  749 (766)
Q Consensus       739 ~RPs~~ev~~~  749 (766)
                      +|||++|+++.
T Consensus       428 ~R~ta~e~L~H  438 (467)
T PTZ00284        428 KRLNARQMTTH  438 (467)
T ss_pred             hCCCHHHHhcC
Confidence            99999999863

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.8e-31  Score=288.22  Aligned_cols=228  Identities=19%  Similarity=0.248  Sum_probs=163.9

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhC---CCCCcccccceeecCCCCCCcCcceEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ||+|+||+||+|+.. +++.||||++.....   .....+..|..++.+.   +||||+++++++.+..        ..+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~--------~~~   72 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDS--------DLY   72 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCC--------eEE
Confidence            699999999999854 689999999864322   2233445566666655   6999999999887653        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|..++.+..   .+++.....++.||++||+|||+.   +|+||||||+|||++.++.+||+|||++...
T Consensus        73 lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~  146 (330)
T cd05586          73 LVTDYMSGGELFWHLQKEG---RFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKAN  146 (330)
T ss_pred             EEEcCCCCChHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCC
Confidence            9999999999999887543   378889999999999999999997   8999999999999999999999999998643


Q ss_pred             ccccc----cccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          644 EDINS----VGGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       644 ~~~~~----~~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      .....    ..++.  ..|.   ....++.++|||||||++|||+||+.||.....  ...+..+....  ..+...   
T Consensus       147 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~--~~~~~~i~~~~--~~~~~~---  219 (330)
T cd05586         147 LTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT--QQMYRNIAFGK--VRFPKN---  219 (330)
T ss_pred             CCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH--HHHHHHHHcCC--CCCCCc---
Confidence            21111    00111  1111   112356789999999999999999999864321  12122221111  111111   


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                       ..+    ..+.+++.+|++.||.+||++.
T Consensus       220 -~~~----~~~~~li~~~L~~~P~~R~~~~  244 (330)
T cd05586         220 -VLS----DEGRQFVKGLLNRNPQHRLGAH  244 (330)
T ss_pred             -cCC----HHHHHHHHHHcCCCHHHCCCCC
Confidence             011    2356889999999999999543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.97  E-value=2.8e-31  Score=282.40  Aligned_cols=238  Identities=21%  Similarity=0.308  Sum_probs=177.5

Q ss_pred             cCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEE
Q 004232          487 MSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      ....||+|+||.||+|.. .+++.||+|.+........+.+.+|+.+++.++||||+++++++...+        ..++|
T Consensus        25 ~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~--------~~~iv   96 (297)
T cd06659          25 NYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGE--------ELWVL   96 (297)
T ss_pred             hhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCC--------eEEEE
Confidence            345799999999999985 468999999987554445667889999999999999999999988753        68999


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccc
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED  645 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~  645 (766)
                      +||+++++|..++...    .+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||++.....
T Consensus        97 ~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~  169 (297)
T cd06659          97 MEFLQGGALTDIVSQT----RLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK  169 (297)
T ss_pred             EecCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccc
Confidence            9999999999877542    378999999999999999999987   899999999999999999999999999854322


Q ss_pred             cccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCC
Q 004232          646 INSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS  717 (766)
Q Consensus       646 ~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  717 (766)
                      ....     +   ...++.......+.++|||||||++|||++|+.|+......  .....+.. ........   ....
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~---~~~~  243 (297)
T cd06659         170 DVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRLRD-SPPPKLKN---AHKI  243 (297)
T ss_pred             ccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHhc-cCCCCccc---cCCC
Confidence            1110     0   11111111233566899999999999999999998643221  11111111 00000000   0011


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          718 SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       718 ~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ...+.+++.+||+.+|.+||++.+|++.
T Consensus       244 ----~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         244 ----SPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             ----CHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                1236788999999999999999999884

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=4.5e-31  Score=279.88  Aligned_cols=253  Identities=18%  Similarity=0.235  Sum_probs=176.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++++|.+.+.||+|+||.||+|.. .+|..||+|.+..... .....+.+|++++++++|+||+++++++.+.+      
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~------   76 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKE------   76 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCC------
Confidence            357788899999999999999985 4688999999865432 22346678999999999999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++|+||+. +++..++....  ..+.+.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        77 --~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg  148 (291)
T cd07870          77 --TLTFVFEYMH-TDLAQYMIQHP--GGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFG  148 (291)
T ss_pred             --eEEEEEeccc-CCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccc
Confidence              6899999996 67776665432  2367888888999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-----ccC-CCCCCcc---cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh---------
Q 004232          639 LSIVSEDINSV-----GGK-QEDPNSW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN---------  700 (766)
Q Consensus       639 la~~~~~~~~~-----~~~-~~~~~~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~---------  700 (766)
                      +++........     ... ...|...   ...+.++|||||||++|||+||+.||...... .+.+....         
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~-~~~~~~~~~~~~~~~~~  227 (291)
T cd07870         149 LARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDV-FEQLEKIWTVLGVPTED  227 (291)
T ss_pred             cccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhH-HHHHHHHHHHcCCCChh
Confidence            98643221110     000 0111111   12355789999999999999999998643221 11111100         


Q ss_pred             ------cccC-ccccccccccCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 ------SQEG-RQRLVDPVVMATS-----SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 ------~~~~-~~~~~d~~~~~~~-----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                            .... .............     .......+.+++.+|++.||++|||+.|++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         228 TWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             hhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence                  0000 0000000000000     0001234678899999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=8.3e-31  Score=277.15  Aligned_cols=245  Identities=22%  Similarity=0.349  Sum_probs=186.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++.|+..+.||+|+||.||+|... ++..||+|++..... ..+.+.+|++++++++|+|++++++++....       
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-------   88 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGD-------   88 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECC-------
Confidence            4566888899999999999999976 688999999976544 5577889999999999999999999988763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|+||+++++|.+++....  ..+++..+..++.+++.||+|||+.   +++|+||||+||+++.++.+||+|||+
T Consensus        89 -~~~lv~e~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~  162 (286)
T cd06614          89 -ELWVVMEYMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGF  162 (286)
T ss_pred             -EEEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccch
Confidence             7899999999999999998653  3589999999999999999999996   899999999999999999999999998


Q ss_pred             Cccccccccc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +.........        .+..++.......+.++|||||||++|||++|+.|+......  .....+.. .......++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~~  239 (286)
T cd06614         163 AAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL--RALFLITT-KGIPPLKNP  239 (286)
T ss_pred             hhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHh-cCCCCCcch
Confidence            7543221100        011111111233567899999999999999999998643221  11111111 111111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             ......+.+++.+||+.+|.+||++.+|++.
T Consensus       240 -------~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         240 -------EKWSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             -------hhCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence                   0012347789999999999999999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=4.3e-31  Score=279.97  Aligned_cols=252  Identities=19%  Similarity=0.260  Sum_probs=177.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|+..+.||+|+||.||+|+.. +++.||||.+..... .....+.+|++++++++||||+++++++.+.+        
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------   76 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKK--------   76 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCC--------
Confidence            56888899999999999999865 689999999865332 22345678999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++ +|.+++.+..  ..+++.....++.+++.||.|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        77 ~~~lv~e~~~~-~L~~~~~~~~--~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~  150 (291)
T cd07844          77 TLTLVFEYLDT-DLKQYMDDCG--GGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLA  150 (291)
T ss_pred             eEEEEEecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccc
Confidence            78999999985 9999887543  2478889999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc--------ccCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHH-hhhhcc--cCc-
Q 004232          641 IVSEDINSV--------GGKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EEL-DSLNSQ--EGR-  705 (766)
Q Consensus       641 ~~~~~~~~~--------~~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~-~~~~~~--~~~-  705 (766)
                      .........        ....++.. .....+.++|||||||++|||++|+.|+........  ... ..+...  ... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (291)
T cd07844         151 RAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWP  230 (291)
T ss_pred             cccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhh
Confidence            543211100        00111111 112245678999999999999999999864321110  000 000000  000 


Q ss_pred             --------cccccccccCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 --------QRLVDPVVMAT------SSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 --------~~~~d~~~~~~------~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                              .....+.....      ........+.+++.+|++.+|++||++.|++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         231 GVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             hhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                    00000000000      00001144678999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.97  E-value=1.1e-30  Score=272.36  Aligned_cols=244  Identities=21%  Similarity=0.307  Sum_probs=185.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+..+.+++||||+++++++...+        
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   72 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEG--------   72 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCC--------
Confidence            36888899999999999999865 599999999876543 44678999999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..++|+||+++++|.+++...   ..+++..+..++.++++|++|||+ .   +++||||+|+||+++.++.+|++|||+
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~  146 (264)
T cd06623          73 EISIVLEYMDGGSLADLLKKV---GKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGI  146 (264)
T ss_pred             eEEEEEEecCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCcc
Confidence            789999999999999999754   348899999999999999999999 6   899999999999999999999999999


Q ss_pred             Ccccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc-chHHHHhhhhcccCcccccc
Q 004232          640 SIVSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-FLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       640 a~~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +..........        +..++.......+.++||||||+++|||+||+.|+..... ........+.. .....   
T Consensus       147 ~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~---  222 (264)
T cd06623         147 SKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICD-GPPPS---  222 (264)
T ss_pred             ceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhc-CCCCC---
Confidence            86543221111        0111111123445689999999999999999999865431 11111221111 10111   


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ....   .....+.+++.+||..+|++||++.|+++.
T Consensus       223 --~~~~---~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         223 --LPAE---EFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             --CCcc---cCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence              1011   012347788999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.7e-31  Score=276.73  Aligned_cols=253  Identities=22%  Similarity=0.322  Sum_probs=185.1

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++++|++.+.||+|+||.||+|... +++.+|+|.+..... ..+++.+|+.+++++ +||||+++++++.+....  .
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~--~   79 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP--G   79 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC--C
Confidence            35688999999999999999999964 678999999875543 346789999999999 699999999999865310  0


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                      .....++||||+++++|.+++.... ....+++.....++.|++.||+|||+.   +++||||+|+||++++++.+|++|
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d  156 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVD  156 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECC
Confidence            1236899999999999999886532 124588999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc--------cCCCCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          637 YGLSIVSEDINSVG--------GKQEDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       637 FGla~~~~~~~~~~--------~~~~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      ||++..........        ...++..     ....++.++|||||||++|||+||+.|+.....  ......+... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~-  233 (275)
T cd06608         157 FGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHP--MRALFKIPRN-  233 (275)
T ss_pred             CccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccch--HHHHHHhhcc-
Confidence            99985433211110        0111100     012245679999999999999999999863221  1111111111 


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ....+..       .......+.+++.+||..||.+|||+.||++
T Consensus       234 ~~~~~~~-------~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         234 PPPTLKS-------PENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             CCCCCCc-------hhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            0111111       1112234778999999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=4.2e-31  Score=278.95  Aligned_cols=250  Identities=20%  Similarity=0.263  Sum_probs=177.1

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||+|+.. +|+.||||.++...  ....+.+.+|++++++++||||+++++++.+.+        
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------   72 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN--------   72 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCC--------
Confidence            4778899999999999999864 68999999886432  223457889999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ ++|..++.... ...+++.....++.+++.||+|||+.   +++||||+|+||++++++.+|++|||++
T Consensus        73 ~~~~v~e~~~-~~l~~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~  147 (284)
T cd07860          73 KLYLVFEFLH-QDLKKFMDASP-LSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA  147 (284)
T ss_pred             cEEEEeeccc-cCHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccch
Confidence            6899999996 68988886543 23588999999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccc--------cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc-ccCcccccc
Q 004232          641 IVSEDINSVG--------GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS-QEGRQRLVD  710 (766)
Q Consensus       641 ~~~~~~~~~~--------~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~-~~~~~~~~d  710 (766)
                      ..........        ...++.. .....+.++|||||||++|||+||+.|+......  .....+.. .+.......
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~  225 (284)
T cd07860         148 RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI--DQLFRIFRTLGTPDEVVW  225 (284)
T ss_pred             hhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHhCCCChhhh
Confidence            6442211100        0111111 1122356799999999999999999998643221  11111000 000000000


Q ss_pred             -------------ccccCCCCH----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 -------------PVVMATSSL----ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 -------------~~~~~~~~~----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                                   +........    .....+.+++.+|++.||++||+++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         226 PGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             hhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                         000000000    01123568999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=9.7e-32  Score=279.61  Aligned_cols=243  Identities=24%  Similarity=0.405  Sum_probs=178.5

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhh--HHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT--VRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |++.+.||+|+||+||+++.. +++.+|+|.+.......  .....+|+.++++++||||+++++++.+..        .
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--------~   72 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDN--------Y   72 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESS--------E
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccc--------c
Confidence            456789999999999999965 56789999998765433  233456999999999999999999998753        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++++|.+++...   ..+++..+..++.++++||+|||+.   +++||||||+||++++++.+||+|||.+.
T Consensus        73 ~~~v~~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   73 LYIVMEYCPGGSLQDYLQKN---KPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSV  146 (260)
T ss_dssp             EEEEEEEETTEBHHHHHHHH---SSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTE
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            89999999999999999833   2488999999999999999999997   89999999999999999999999999986


Q ss_pred             cc-cccccc---ccC--CCCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccccccc
Q 004232          642 VS-EDINSV---GGK--QEDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~-~~~~~~---~~~--~~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .. ......   ...  ...|..   ....+.++||||+|+++|||++|..|+...... ..........    .....+
T Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~  222 (260)
T PF00069_consen  147 KLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILK----RPLPSS  222 (260)
T ss_dssp             ESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHH----THHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhccc----cccccc
Confidence            42 111110   000  011111   234566789999999999999999998754111 1111111110    000000


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......   ....+.+++.+|++.||++||++.|+++
T Consensus       223 ~~~~~~---~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  223 SQQSRE---KSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TTSHTT---SHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             ccccch---hHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000000   0145789999999999999999999975

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.97  E-value=6e-31  Score=282.52  Aligned_cols=188  Identities=18%  Similarity=0.314  Sum_probs=142.7

Q ss_pred             CCceecCCceeEEEEEec---CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ...||+|+||.||+|+..   ++..||+|.+.....  ...+.+|++++++++||||+++++++.....      ...++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~--~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~------~~~~l   77 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI--SMSACREIALLRELKHPNVIALQKVFLSHSD------RKVWL   77 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC--cHHHHHHHHHHHhCCCCCeeeEEEEEeccCC------CeEEE
Confidence            357999999999999864   457899998865432  3457789999999999999999998875431      36899


Q ss_pred             EEEccCCCChhhhhhcCC------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEE
Q 004232          565 VYEFMSNGNFRTHISENT------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL----NEHRIAKL  634 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----d~~~~~kl  634 (766)
                      |+||+++ +|.+++....      ....+++.....++.|++.||+|||+.   +|+||||||+||++    +.++.+||
T Consensus        78 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl  153 (317)
T cd07867          78 LFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI  153 (317)
T ss_pred             EEeeeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEE
Confidence            9999886 6766664221      122478888899999999999999997   89999999999999    45679999


Q ss_pred             ecCCCCccccccccc-------ccC--CCCCCc---ccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          635 SDYGLSIVSEDINSV-------GGK--QEDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       635 ~DFGla~~~~~~~~~-------~~~--~~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      +|||+++........       ..+  ...|..   ...++.++|||||||++|||+||+.||..
T Consensus       154 ~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~  218 (317)
T cd07867         154 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  218 (317)
T ss_pred             eeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence            999999754321110       000  011111   12345678999999999999999999863

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=5e-31  Score=291.43  Aligned_cols=248  Identities=18%  Similarity=0.223  Sum_probs=175.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec---CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..+|++.+.||+|+||.||++...   .+..||||.+...     +...+|++++++++|||||++++++....      
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~------  159 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKS------  159 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCC------
Confidence            356899999999999999999753   4678999988643     23567999999999999999999887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+. ++|.+++...   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       160 --~~~lv~e~~~-~~l~~~l~~~---~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG  230 (392)
T PHA03207        160 --TVCMVMPKYK-CDLFTYVDRS---GPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFG  230 (392)
T ss_pred             --EEEEEehhcC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCc
Confidence              6899999986 5888888433   3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-------cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhc---c-c
Q 004232          639 LSIVSEDINSV-------GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNS---Q-E  703 (766)
Q Consensus       639 la~~~~~~~~~-------~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~---~-~  703 (766)
                      ++.........       ++   ..++......++.++|||||||++|||++|+.|+...... ....+..+..   . .
T Consensus       231 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~  310 (392)
T PHA03207        231 AACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHP  310 (392)
T ss_pred             cccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCc
Confidence            98654321110       10   1111111234566899999999999999999998543211 1111111100   0 0


Q ss_pred             -Cc---------------cccccccccCCCC---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 -GR---------------QRLVDPVVMATSS---LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 -~~---------------~~~~d~~~~~~~~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ..               .....+.......   ......+.+++.+|+..||++||++.|++..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        311 LEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             cccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence             00               0000000000000   0001235678899999999999999999876

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=3e-31  Score=280.07  Aligned_cols=250  Identities=19%  Similarity=0.245  Sum_probs=175.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||+|+.. +|+.||+|.++...  ......+.+|++++++++||||+++++++.+..        
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~--------   72 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDK--------   72 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCC--------
Confidence            3677789999999999999864 68999999986432  222356778999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||++ |+|.+++....  ..+++.....++.||++||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        73 ~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~  146 (284)
T cd07839          73 KLTLVFEYCD-QDLKKYFDSCN--GDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLA  146 (284)
T ss_pred             ceEEEEecCC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchh
Confidence            6899999998 47877776432  3488999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---cc-----
Q 004232          641 IVSEDINSV-----GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---QE-----  703 (766)
Q Consensus       641 ~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---~~-----  703 (766)
                      +........     .... ..|..   ...++.++|||||||++|||+||+.|+...... ......+..   ..     
T Consensus       147 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~  225 (284)
T cd07839         147 RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV-DDQLKRIFRLLGTPTEESW  225 (284)
T ss_pred             hccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCH-HHHHHHHHHHhCCCChHHh
Confidence            654321110     0000 11111   122456789999999999999998885432211 111111100   00     


Q ss_pred             -Cccccccc----cccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 -GRQRLVDP----VVMATSS-----LESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 -~~~~~~d~----~~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ......+.    .......     ......+.+++.+|++.||.+|||++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         226 PGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             HHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence             00000000    0000000     011234678999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=9.9e-32  Score=288.47  Aligned_cols=241  Identities=22%  Similarity=0.319  Sum_probs=182.6

Q ss_pred             CcCCceecCCceeEEEEEe-cCCceEEEEEccC----ChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPS----SKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~----~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +...+||+|+|-+||||.. .+|..||--.++.    ......++|..|+.+|+.|+|||||+++.++.+...      .
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n------~  116 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDN------K  116 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCC------c
Confidence            3457899999999999974 3577777433321    123445889999999999999999999999887642      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFGl  639 (766)
                      .+-+|+|.|..|+|+.|..+.+.   ++.......++||.+||.|||++ .|||||||||..||+|+. .|.+||+|.||
T Consensus       117 ~in~iTEL~TSGtLr~Y~kk~~~---vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGL  192 (632)
T KOG0584|consen  117 TINFITELFTSGTLREYRKKHRR---VNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGL  192 (632)
T ss_pred             eeeeeeecccCCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhH
Confidence            68899999999999999987653   67788888999999999999996 478999999999999985 58999999999


Q ss_pred             Cccccccc--ccccCCCCC--C-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch--HHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDIN--SVGGKQEDP--N-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL--QEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~--~~~~~~~~~--~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~--~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |.......  ++-++++-.  . +-+.|....||||||+.|+||+|+..||..-....  ...+.+-.......++.||.
T Consensus       193 Atl~r~s~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPe  272 (632)
T KOG0584|consen  193 ATLLRKSHAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPE  272 (632)
T ss_pred             HHHhhccccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHH
Confidence            97654322  222333211  1 22456677899999999999999999997432211  12222223333444555543


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                  +.+++.+|+.. .++|||+.|+++.
T Consensus       273 ------------vr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  273 ------------VREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             ------------HHHHHHHHhcC-chhccCHHHHhhC
Confidence                        67899999999 9999999999865

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=8.4e-31  Score=275.63  Aligned_cols=240  Identities=20%  Similarity=0.367  Sum_probs=180.2

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCC---CCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLR---HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~---Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .|+..+.||+|+||.||+|.. .++..||+|.+... .....+++.+|++++++++   |||+++++++|.+..      
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~------   75 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGP------   75 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCC------
Confidence            466778999999999999995 57899999988643 2344567889999999997   999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++++|.++++..    .+++.....++.+++.||.|||+.   +++||||+|+||++++++.+|++|||
T Consensus        76 --~~~lv~e~~~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg  146 (277)
T cd06917          76 --RLWIIMEYAEGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFG  146 (277)
T ss_pred             --EEEEEEecCCCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCC
Confidence              689999999999999988643    488999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccccccc-----c---cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          639 LSIVSEDINSV-----G---GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       639 la~~~~~~~~~-----~---~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      ++.........     +   +..++.. ....++.++|||||||++|||++|..|+.....  ......+.. .     .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~--~~~~~~~~~-~-----~  218 (277)
T cd06917         147 VAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDA--FRAMMLIPK-S-----K  218 (277)
T ss_pred             ceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCCh--hhhhhcccc-C-----C
Confidence            98654322110     0   0011111 112346689999999999999999999864321  111111100 0     1


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+.+...   .....+.+++.+||+.||++||++.|+++.
T Consensus       219 ~~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         219 PPRLEDN---GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             CCCCCcc---cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            1111111   022347789999999999999999999864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=5.4e-31  Score=278.58  Aligned_cols=251  Identities=18%  Similarity=0.278  Sum_probs=180.0

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|... +++.||||.++...  ....+.+.+|++++++++|+||+++++++.+.+        
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   73 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKG--------   73 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECC--------
Confidence            5788899999999999999865 68899999886432  333567899999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++++.+..+..+.   ..+++.....++.+++.|++|||+.   +++||||+|+||++++++.+||+|||++
T Consensus        74 ~~~iv~e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~  147 (288)
T cd07833          74 RLYLVFEYVERTLLELLEASP---GGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFA  147 (288)
T ss_pred             EEEEEEecCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecc
Confidence            689999999998777665433   2378999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc--c-------ccCCCCCCccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhh----hc----
Q 004232          641 IVSEDINS--V-------GGKQEDPNSWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSL----NS----  701 (766)
Q Consensus       641 ~~~~~~~~--~-------~~~~~~~~~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~----~~----  701 (766)
                      ........  .       ...+++..... ..+.++|||||||++|||++|+.|+........ ......    ..    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T cd07833         148 RALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQE  227 (288)
T ss_pred             cccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhh
Confidence            65433221  0       01111111112 456689999999999999999988864322110 000000    00    


Q ss_pred             ----ccC--cccccccccc----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          702 ----QEG--RQRLVDPVVM----ATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       702 ----~~~--~~~~~d~~~~----~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          ...  ..+..++...    ..........+.+++.+||..+|++||++++|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         228 LFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             hcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                000  0000000000    0000011345789999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=7.7e-31  Score=272.89  Aligned_cols=240  Identities=20%  Similarity=0.321  Sum_probs=180.8

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +|++.+.||+|+||.||+|+.. +++.||+|.+....   ....+.+.+|++++++++||||+++++++.++.       
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   73 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEE-------   73 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCC-------
Confidence            4778899999999999999865 68999999986532   234678899999999999999999999887653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|+||+++++|.+++.+.   ..+++.....++.++++||+|||+.   +++|+||||+||++++++.+||+|||+
T Consensus        74 -~~~lv~e~~~~~~L~~~l~~~---~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~  146 (258)
T cd05578          74 -NMYLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNI  146 (258)
T ss_pred             -eEEEEEeCCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeeccc
Confidence             689999999999999998754   2478889999999999999999987   899999999999999999999999999


Q ss_pred             Cccccccccccc-------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDINSVGG-------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~~~~~-------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +...........       ..++.......+.++||||||+++|||++|+.|+................. ....  .+ 
T Consensus       147 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~--~~-  222 (258)
T cd05578         147 ATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET-ADVL--YP-  222 (258)
T ss_pred             ccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc-cccc--Cc-
Confidence            865432211100       111111123356789999999999999999999875432222222211110 0011  11 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCH--HHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSF--EDIL  747 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~--~ev~  747 (766)
                        ..    ....+.+++.+||+.||.+||++  +|+.
T Consensus       223 --~~----~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         223 --AT----WSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             --cc----CcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence              01    11347789999999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.97  E-value=7.9e-31  Score=272.39  Aligned_cols=241  Identities=20%  Similarity=0.349  Sum_probs=179.7

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||+|... +|..||+|.+....  ....+.+.+|++++++++||||+++++.+.+.+        
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~--------   72 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENG--------   72 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCC--------
Confidence            4677889999999999999864 58899999986532  233467889999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGl  639 (766)
                      ..++|+||+++++|.+++.+.. ...+++..+..++.+++.|++|||+.   +++||||||+||++++++ .+|++|||.
T Consensus        73 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~  148 (257)
T cd08225          73 RLFIVMEYCDGGDLMKRINRQR-GVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGI  148 (257)
T ss_pred             eEEEEEecCCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEeccccc
Confidence            6899999999999999987543 23478999999999999999999987   899999999999999875 579999999


Q ss_pred             Cccccccccccc--------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSVGG--------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~~~--------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +...........        ..++.......+.++|||||||++|||++|..|+....  .......... .....+   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~-~~~~~~---  222 (257)
T cd08225         149 ARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN--LHQLVLKICQ-GYFAPI---  222 (257)
T ss_pred             chhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHhc-ccCCCC---
Confidence            865433211110        01111111345568999999999999999999986322  1222221111 111111   


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ....+    ..+.+++.+||+.+|++||++.||++
T Consensus       223 --~~~~~----~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         223 --SPNFS----RDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             --CCCCC----HHHHHHHHHHhccChhhCcCHHHHhh
Confidence              11111    23678899999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.8e-31  Score=257.96  Aligned_cols=247  Identities=18%  Similarity=0.286  Sum_probs=185.9

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh--------hhhHHHHHHHHHHHHhC-CCCCccccccee
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKL-RHPHLVCLLGHC  548 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~  548 (766)
                      +...+.|+..+++|+|..++|-++. ..+|...|+|++....        ....+...+|+.||+++ .||+|+++.+++
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~y   92 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVY   92 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeec
Confidence            4445668888999999999999886 4578899999885321        12245567899999998 599999999999


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE  628 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~  628 (766)
                      ..+.        .+++|+|.|+.|.|.++|.+.   -.++..+..+|+.++.+|++|||..   .||||||||+|||+|+
T Consensus        93 es~s--------F~FlVFdl~prGELFDyLts~---VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILldd  158 (411)
T KOG0599|consen   93 ESDA--------FVFLVFDLMPRGELFDYLTSK---VTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDD  158 (411)
T ss_pred             cCcc--------hhhhhhhhcccchHHHHhhhh---eeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeecc
Confidence            8763        789999999999999999754   2478888899999999999999998   7999999999999999


Q ss_pred             CCcEEEecCCCCccccccccc---ccCC----CCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCcc-chHH
Q 004232          629 HRIAKLSDYGLSIVSEDINSV---GGKQ----EDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-FLQE  694 (766)
Q Consensus       629 ~~~~kl~DFGla~~~~~~~~~---~~~~----~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-~~~~  694 (766)
                      +.++||+|||+|.........   .+++    ++...      -..++.+.|.||.|||||-++.|.+||....+ ....
T Consensus       159 n~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR  238 (411)
T KOG0599|consen  159 NMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLR  238 (411)
T ss_pred             ccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence            999999999999765443221   1111    11110      12345578999999999999999999853221 1111


Q ss_pred             HHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          695 ELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       695 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+     .+...++-.|.+...     ...+.+|+.+|++.||++|-|.+|+++.
T Consensus       239 ~I-----meGkyqF~speWadi-----s~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  239 MI-----MEGKYQFRSPEWADI-----SATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             HH-----HhcccccCCcchhhc-----cccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            11     123344444443221     2337799999999999999999999864

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=2e-30  Score=267.76  Aligned_cols=242  Identities=24%  Similarity=0.414  Sum_probs=184.3

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +|+..+.||+|+||.||++... ++..+++|++........+.+.+|++++++++|||++++++++....        ..
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~   72 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKD--------EL   72 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC--------eE
Confidence            4677889999999999999975 68899999997765556678999999999999999999999887753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++++||+++++|.+++....  ..+++..+..++.+++.|++|||+.   +++||||+|+||++++++.+||+|||.+..
T Consensus        73 ~l~~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          73 WIVMEFCSGGSLKDLLKSTN--QTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             EEEEecCCCCcHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeecccccc
Confidence            99999999999999887642  3589999999999999999999996   899999999999999999999999999865


Q ss_pred             ccccc---cccc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          643 SEDIN---SVGG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       643 ~~~~~---~~~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .....   ...+    .+++.......+.++||||||+++|||++|+.|+......  ........ .......++..  
T Consensus       148 ~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~~~~--  222 (253)
T cd05122         148 LSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM--KALFKIAT-NGPPGLRNPEK--  222 (253)
T ss_pred             ccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHHh-cCCCCcCcccc--
Confidence            43321   1000    1111111233567899999999999999999998643221  11111111 11111111110  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           ....+.+++.+||+.||++||++.||++
T Consensus       223 -----~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         223 -----WSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             -----cCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                 0134778999999999999999999975

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=2.3e-30  Score=278.01  Aligned_cols=242  Identities=23%  Similarity=0.329  Sum_probs=178.7

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |+..+.||+|+||.||+|+. .++..||+|++....   ....+.+.+|++++++++|||+++++++|.+..        
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------   98 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH--------   98 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC--------
Confidence            66678899999999999985 468999999986432   233467888999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ |++.+.+....  ..++|..+..++.+++.|+.|||+.   +|+||||+|+||+++.++.+||+|||++
T Consensus        99 ~~~lv~e~~~-g~l~~~~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~  172 (317)
T cd06635          99 TAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSA  172 (317)
T ss_pred             eEEEEEeCCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCc
Confidence            6799999997 47777665432  3489999999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          641 IVSEDINSVGGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       641 ~~~~~~~~~~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........+..  ..|..     ....+.++|||||||++|||++|+.|+.....  ......+.... ....     
T Consensus       173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~~-~~~~-----  244 (317)
T cd06635         173 SIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNE-SPTL-----  244 (317)
T ss_pred             cccCCcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhcc-CCCC-----
Confidence            6543321111110  11111     12356689999999999999999998753221  11111111111 0000     


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .   .......+.+++.+||+.+|.+||++.+|++..-
T Consensus       245 ~---~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~  279 (317)
T cd06635         245 Q---SNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMF  279 (317)
T ss_pred             C---CccccHHHHHHHHHHccCCcccCcCHHHHHhChh
Confidence            0   0111234778999999999999999999998643

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=1.9e-30  Score=274.24  Aligned_cols=239  Identities=21%  Similarity=0.325  Sum_probs=179.1

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      |...+.||+|++|.||+|.. .++..||+|++........+.+.+|+.++++++||||+++++++...+        ..+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~--------~~~   92 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGD--------ELW   92 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCC--------eEE
Confidence            33457899999999999985 468899999987655555667889999999999999999999887653        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||+++++|.+++...    .+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+|++|||++...
T Consensus        93 ~v~e~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~  165 (285)
T cd06648          93 VVMEFLEGGALTDIVTHT----RMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQV  165 (285)
T ss_pred             EEEeccCCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhh
Confidence            999999999999998752    378899999999999999999997   8999999999999999999999999987543


Q ss_pred             cccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......     +   ...++......++.++|||||||++|||++|+.|+......  .....+.. .......++   .
T Consensus       166 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~~---~  239 (285)
T cd06648         166 SKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPL--QAMKRIRD-NLPPKLKNL---H  239 (285)
T ss_pred             ccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHH--HHHHHHHh-cCCCCCccc---c
Confidence            221100     0   11111111233567899999999999999999998643221  11111111 111111111   0


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          .....+.+++.+||+.+|++||++.++++
T Consensus       240 ----~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         240 ----KVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             ----cCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence                01134788999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=279.43  Aligned_cols=242  Identities=22%  Similarity=0.276  Sum_probs=179.0

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +|+..+.||+|+||.||+|+.. +++.||+|.+.....   ...+.+..|+++++.++||||+++++++.+..       
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-------   74 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTET-------   74 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCC-------
Confidence            6788899999999999999865 589999999875432   24567889999999999999999999987653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.... ...+++.....++.+++.||+|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        75 -~~~lv~e~~~~~~L~~~~~~~~-~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~  149 (316)
T cd05574          75 -YLCLVMDYCPGGELFRLLQRQP-GKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDL  149 (316)
T ss_pred             -EEEEEEEecCCCCHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecch
Confidence             6899999999999999887532 34588999999999999999999987   899999999999999999999999999


Q ss_pred             Ccccccccccc-------------------------------------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCC
Q 004232          640 SIVSEDINSVG-------------------------------------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGP  682 (766)
Q Consensus       640 a~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~  682 (766)
                      +..........                                     ...++.......+.++|||||||++|||++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~  229 (316)
T cd05574         150 SKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGT  229 (316)
T ss_pred             hhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCC
Confidence            85432111000                                     00000011122455789999999999999999


Q ss_pred             CccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC----HHHHHH
Q 004232          683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS----FEDILW  748 (766)
Q Consensus       683 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs----~~ev~~  748 (766)
                      .|+.....  ...+..+....  ..+..       .......+.+++.+||+.||++||+    +.|++.
T Consensus       230 ~pf~~~~~--~~~~~~~~~~~--~~~~~-------~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         230 TPFKGSNR--DETFSNILKKE--VTFPG-------SPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCCCCch--HHHHHHHhcCC--ccCCC-------ccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            99864322  11111111111  00000       0002234788999999999999999    555544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=2.2e-30  Score=274.46  Aligned_cols=238  Identities=19%  Similarity=0.288  Sum_probs=179.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|.+.+.||+|+||.||++... +++.||+|.++...   ....+.+.+|++++++++||||+++++++.+..      
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   74 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDS------   74 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCC------
Confidence            36788899999999999999864 68999999986532   233567889999999999999999999987753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +++||||+|+||+++.++.+||+|||
T Consensus        75 --~~~~v~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg  146 (290)
T cd05580          75 --NLYLVMEYVPGGELFSHLRKSG---RFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFG  146 (290)
T ss_pred             --eEEEEEecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCC
Confidence              6899999999999999987653   478889999999999999999996   89999999999999999999999999


Q ss_pred             CCccccccccc--c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDINSV--G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~~~--~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      +++........  +   ...++.......+.++||||||+++|||++|+.|+.....  ......+.. . ...+     
T Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~-~-~~~~-----  217 (290)
T cd05580         147 FAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP--IQIYEKILE-G-KVRF-----  217 (290)
T ss_pred             CccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhc-C-CccC-----
Confidence            98654332111  0   1111111123345678999999999999999999864331  111111111 1 0111     


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRP-----SFEDIL  747 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~  747 (766)
                      ....    -..+.+++.+||+.+|.+||     +.+|++
T Consensus       218 ~~~~----~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         218 PSFF----SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             CccC----CHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence            0111    12367889999999999999     556654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=7.7e-31  Score=323.18  Aligned_cols=252  Identities=34%  Similarity=0.528  Sum_probs=154.2

Q ss_pred             CCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      ++++|++|+|++|++++.+|.  +.+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..++++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            444444444444444444442  234455555555555555555555566666666666666655566666666666666


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCc
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFS  271 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~  271 (766)
                      +|++|++++.+|..++++++|+.|+|++|++++.+|. ++.+++|++|++++|.+++.+|..   ..+|+.|++++|+++
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            6666666666666666666666666666666555553 556666666666666666555542   234566666666666


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCC
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS  351 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~  351 (766)
                      +.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..++
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            66666666666666666666666666666666666666666666666666666666666677777777777666676666


Q ss_pred             CCCCCceeecCCCcCCCC
Q 004232          352 NESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       352 ~~~~l~~l~l~~N~l~~~  369 (766)
                      .+.+|+.+++++|.+++.
T Consensus       354 ~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             CCCCCcEEECCCCeeEee
Confidence            666777777777766653

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=2e-30  Score=279.28  Aligned_cols=244  Identities=20%  Similarity=0.292  Sum_probs=188.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhh---hHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKY---TVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~  556 (766)
                      ...|++.+.||+|.||.||+++.. +|+.+|+|.+++....   ....+.+|+++|+++. |||||.+++++.+..    
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~----  109 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD----  109 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC----
Confidence            456888899999999999999965 5999999999765432   3468999999999998 999999999999864    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----CcE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH----RIA  632 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~----~~~  632 (766)
                          .+++|||++.+|.|.+.+.+.    .++......++.+++.+++|||+.   +|+||||||+|+|+...    +.+
T Consensus       110 ----~~~lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~i  178 (382)
T KOG0032|consen  110 ----SVYLVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRI  178 (382)
T ss_pred             ----eEEEEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcE
Confidence                789999999999999998765    278888999999999999999996   99999999999999743    479


Q ss_pred             EEecCCCCcccccccccc---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          633 KLSDYGLSIVSEDINSVG---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |++|||+|..........   +++    ++......++.++||||.||++|.|+.|.+||.........  ..+..  ..
T Consensus       179 k~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~--~~i~~--~~  254 (382)
T KOG0032|consen  179 KLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIF--LAILR--GD  254 (382)
T ss_pred             EEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHH--HHHHc--CC
Confidence            999999997765521111   111    11112245677899999999999999999999754432221  12211  11


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .++.++.+...     ...+.+++.+++..||.+|++..++++.
T Consensus       255 ~~f~~~~w~~i-----s~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  255 FDFTSEPWDDI-----SESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             CCCCCCCcccc-----CHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            12333322211     2336788999999999999999999874

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=1.2e-30  Score=276.21  Aligned_cols=247  Identities=20%  Similarity=0.322  Sum_probs=174.6

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|+||.||+++. .+++.||+|.+.... ......+.+|+.++.++. ||||++++|++.+++        
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~--------   76 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG--------   76 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC--------
Confidence            455567899999999999985 468999999986532 344567889999999996 999999999887653        


Q ss_pred             eEEEEEEccCCCChhh---hhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRT---HISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~---~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      ..+++|||++. ++.+   .+.... ...+++.....++.+++.||+|||+..  +++||||||+||++++++.+||+||
T Consensus        77 ~~~~~~e~~~~-~l~~l~~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~df  152 (288)
T cd06616          77 DCWICMELMDI-SLDKFYKYVYEVL-KSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDF  152 (288)
T ss_pred             cEEEEEecccC-CHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeec
Confidence            57899999875 4433   332221 235888999999999999999999742  7999999999999999999999999


Q ss_pred             CCCcccccccc----cc---cCCCCCCcc---cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINS----VG---GKQEDPNSW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~----~~---~~~~~~~~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |++........    .+   ...++....   ..++.++|||||||++|||++|+.|+..... .......... ...  
T Consensus       153 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~~~~~~~-~~~--  228 (288)
T cd06616         153 GISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS-VFDQLTQVVK-GDP--  228 (288)
T ss_pred             chhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch-HHHHHhhhcC-CCC--
Confidence            99864322111    01   111111111   2456789999999999999999999864321 1111111111 000  


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         +.+...........+.+++.+||+.+|++||+++||++.
T Consensus       229 ---~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         229 ---PILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             ---CcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               111111111122347899999999999999999999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=4.6e-30  Score=266.23  Aligned_cols=243  Identities=20%  Similarity=0.344  Sum_probs=184.3

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|...+.||+|++|.||+|... ++..|++|++....  ....+.+.+|++++++++||||+++++.+.+..      ..
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------~~   74 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEE------KN   74 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCC------CC
Confidence            3667789999999999999965 78999999986554  245678899999999999999999999988652      12


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|+||+++++|.+++.+..   .+++..+..++.+++.|++|||+.   +++|+||+|+||+++.++.+||+|||.+
T Consensus        75 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~  148 (260)
T cd06606          75 TLNIFLEYVSGGSLSSLLKKFG---KLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCA  148 (260)
T ss_pred             eEEEEEEecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccE
Confidence            6899999999999999987653   589999999999999999999996   8999999999999999999999999998


Q ss_pred             cccccccc---cc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          641 IVSEDINS---VG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       641 ~~~~~~~~---~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ........   ..       ...++.......+.++||||||+++|||++|..|+..... ................+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~  227 (260)
T cd06606         149 KRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN-PMAALYKIGSSGEPPEIPE  227 (260)
T ss_pred             EecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHhccccCCCcCCCc
Confidence            65443221   00       0111111112356689999999999999999999865431 1111111111111111111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                               .....+.+++.+|++.+|++||++.|+++
T Consensus       228 ---------~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         228 ---------HLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             ---------ccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence                     11234778899999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=2.7e-30  Score=273.01  Aligned_cols=252  Identities=16%  Similarity=0.270  Sum_probs=180.7

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|+.++++++||||+++++++.+..        
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--------   72 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGS--------   72 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCC--------
Confidence            4777889999999999999864 68999999987543  333567899999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+ +++|.+++....  ..+++..+..++.+++.||+|||+.   +++|+||||+||+++.++.+|++|||++
T Consensus        73 ~~~~v~e~~-~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~  146 (286)
T cd07832          73 GFVLVMEYM-PSDLSEVLRDEE--RPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLA  146 (286)
T ss_pred             eeEEEeccc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeec
Confidence            689999999 999999886543  4588999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc------ccc---CCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhh-hhcc------
Q 004232          641 IVSEDINS------VGG---KQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDS-LNSQ------  702 (766)
Q Consensus       641 ~~~~~~~~------~~~---~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~-~~~~------  702 (766)
                      ........      .+.   ..++.. .....+.++||||+||++|||+||.+++....... ...... ....      
T Consensus       147 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (286)
T cd07832         147 RLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWP  226 (286)
T ss_pred             ccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHh
Confidence            65432210      000   111111 11224568999999999999999977765322110 011100 0000      


Q ss_pred             -----cCccccccccccC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 -----EGRQRLVDPVVMA----TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 -----~~~~~~~d~~~~~----~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           .....+..+....    ....+....+.+++.+|++.+|.+||+++++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         227 GLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             hccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                 0000000000000    0000112457899999999999999999999753

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.7e-31  Score=279.11  Aligned_cols=240  Identities=24%  Similarity=0.343  Sum_probs=180.6

Q ss_pred             CCcCCceecCCceeEEEEE-ecCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |...+.||.|+||.||-|+ ..+.+.||||++.-..+   ...+++..|+..|.+++|||+|.+.|+|....        
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~--------   99 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREH--------   99 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccc--------
Confidence            4556789999999999998 45789999999975433   33678899999999999999999999998653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..|||||||-| +-.+.+.-+.  +++..-++..|..|+..||+|||+.   +.||||||+.||||.+.|.+|++|||-|
T Consensus       100 TaWLVMEYClG-SAsDlleVhk--KplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSA  173 (948)
T KOG0577|consen  100 TAWLVMEYCLG-SASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSA  173 (948)
T ss_pred             hHHHHHHHHhc-cHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccch
Confidence            67999999976 6666654332  4588888999999999999999998   7899999999999999999999999998


Q ss_pred             cccccccccccCCC--CC-----CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          641 IVSEDINSVGGKQE--DP-----NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       641 ~~~~~~~~~~~~~~--~~-----~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .......+..+++.  .|     ..-+.++-++||||+|+++.|+...++|...  ......+-.+...+      .|.+
T Consensus       174 si~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFn--MNAMSALYHIAQNe------sPtL  245 (948)
T KOG0577|consen  174 SIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN--MNAMSALYHIAQNE------SPTL  245 (948)
T ss_pred             hhcCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccC--chHHHHHHHHHhcC------CCCC
Confidence            77666555444321  00     0113455689999999999999999998652  22222222222211      1111


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ...  +-...+..++..|++.-|.+|||..++++.
T Consensus       246 -qs~--eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  246 -QSN--EWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             -CCc--hhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence             111  112336788899999999999999988764

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=1.9e-30  Score=281.20  Aligned_cols=259  Identities=19%  Similarity=0.303  Sum_probs=181.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|... +++.||||++...  .......+.+|+.+++++ +||||++++|+|....+    
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~----   81 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEND----   81 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCC----
Confidence            467888899999999999999865 6889999988542  223345677899999999 99999999998875431    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||++ ++|..++.+.    .++|..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        82 --~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~  151 (337)
T cd07852          82 --KDIYLVFEYME-TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADF  151 (337)
T ss_pred             --ceEEEEecccc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeec
Confidence              35799999998 5998888653    478999999999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc----------ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhc-
Q 004232          638 GLSIVSEDINSV----------GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNS-  701 (766)
Q Consensus       638 Gla~~~~~~~~~----------~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~-  701 (766)
                      |++.........          +... ..|.   .....+.++|||||||++|||+||+.|+........ ........ 
T Consensus       152 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~  231 (337)
T cd07852         152 GLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGP  231 (337)
T ss_pred             cchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            998654322110          0000 0111   112345679999999999999999998863221110 00000000 


Q ss_pred             ----------ccCcccccc----ccccC--CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHH
Q 004232          702 ----------QEGRQRLVD----PVVMA--TSSLESLSIVISIANKCICSESWSRPSFEDILWN--LQYAA  754 (766)
Q Consensus       702 ----------~~~~~~~~d----~~~~~--~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~  754 (766)
                                ......+.+    .....  .........+.+++.+||+.+|++|||+.++++.  ++...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~  302 (337)
T cd07852         232 PSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFH  302 (337)
T ss_pred             CCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhc
Confidence                      000000000    00000  0000012347889999999999999999999976  44443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1.6e-30  Score=276.00  Aligned_cols=254  Identities=19%  Similarity=0.245  Sum_probs=178.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhh--hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKY--TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|+..+.||+|+||.||+|... +++.||+|.++.....  ....+.+|+.++++++||||+++++++.....      
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~------   78 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNL------   78 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCC------
Confidence            46888899999999999999975 6889999998754322  23456789999999999999999999876521      


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||+++ +|.+++....  ..+++.....++.|++.||+|||+.   +++||||||+||++++++.+||+|||+
T Consensus        79 ~~~~lv~e~~~~-~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~  152 (293)
T cd07843          79 DKIYMVMEYVEH-DLKSLMETMK--QPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGL  152 (293)
T ss_pred             CcEEEEehhcCc-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCc
Confidence            368999999985 8988886543  2589999999999999999999987   899999999999999999999999999


Q ss_pred             Ccccccccc-c----c---cCCCCCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhh---------
Q 004232          640 SIVSEDINS-V----G---GKQEDPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLN---------  700 (766)
Q Consensus       640 a~~~~~~~~-~----~---~~~~~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~---------  700 (766)
                      +........ .    +   ...++... ....+.++|+|||||++|||++|..|+....... ...+....         
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (293)
T cd07843         153 AREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWP  232 (293)
T ss_pred             eeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHH
Confidence            865433211 0    0   01111111 1123567999999999999999999886432210 00000000         


Q ss_pred             ---ccc-----CccccccccccCCCCHH-HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 ---SQE-----GRQRLVDPVVMATSSLE-SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 ---~~~-----~~~~~~d~~~~~~~~~~-~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ...     .........+....... ....+.+++.+|++.+|++|||+.|++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         233 GFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             HhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence               000     00000000000000000 1234678999999999999999999975

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=1.5e-30  Score=281.70  Aligned_cols=256  Identities=15%  Similarity=0.262  Sum_probs=181.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+. .+|..||+|++....  ....+.+.+|+.++++++||||+++++++.....    ..
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~----~~   80 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGA----DF   80 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCC----CC
Confidence            6788889999999999999985 469999999986532  2345677889999999999999999998765431    12


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||+. |+|.+++....   .+++.....++.+++.||+|||+.   +|+||||||+||++++++.+||+|||+
T Consensus        81 ~~~~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~  153 (334)
T cd07855          81 KDVYVVMDLME-SDLHHIIHSDQ---PLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGM  153 (334)
T ss_pred             ceEEEEEehhh-hhHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEeccccc
Confidence            36899999996 68988886442   388999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc---------ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcc---
Q 004232          640 SIVSEDINSV---------GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQ---  702 (766)
Q Consensus       640 a~~~~~~~~~---------~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~---  702 (766)
                      +.........         +... ..|.   .....+.++|||||||++|||++|+.||........ ..+......   
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~  233 (334)
T cd07855         154 ARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSE  233 (334)
T ss_pred             ceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChh
Confidence            8654321110         0000 0111   112356689999999999999999999864322110 000000000   


Q ss_pred             --------cCcccccccc-ccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 --------EGRQRLVDPV-VMATSS-----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 --------~~~~~~~d~~-~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                              ....+..+.. ......     ......+.+++.+|++.+|++||++++++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         234 EVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             HhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                    0000000000 000000     0112457899999999999999999999875

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=282.82  Aligned_cols=241  Identities=21%  Similarity=0.368  Sum_probs=180.8

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +++...||.|+||+||||+-+ ++...|.|.+........+++.-||+||+..+||+||+|++.|...        +.+|
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~e--------nkLw  105 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFE--------NKLW  105 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhcc--------CceE
Confidence            344567899999999999854 5666788888877777788999999999999999999999977655        3799


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +..|||.||..+..+-+-  +.+|+..++..++++++.||.|||+.   .|||||||+.|||+.-+|.+|++|||++...
T Consensus       106 iliEFC~GGAVDaimlEL--~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn  180 (1187)
T KOG0579|consen  106 ILIEFCGGGAVDAIMLEL--GRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKN  180 (1187)
T ss_pred             EEEeecCCchHhHHHHHh--ccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccc
Confidence            999999999999887654  35689999999999999999999998   7999999999999999999999999998432


Q ss_pred             ccccccccCCCCCCcc-------------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          644 EDINSVGGKQEDPNSW-------------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       644 ~~~~~~~~~~~~~~~~-------------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ..........-...||             .+|.+++||||||++|.||..+.+|.....  ....+-.+...+      .
T Consensus       181 ~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHheln--pMRVllKiaKSe------P  252 (1187)
T KOG0579|consen  181 KSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRVLLKIAKSE------P  252 (1187)
T ss_pred             hhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccc--hHHHHHHHhhcC------C
Confidence            2111100111111223             345678999999999999999998865322  122222222211      1


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      |.+..+..+  ...+-++..+|+..+|..||+..|+++
T Consensus       253 PTLlqPS~W--s~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  253 PTLLQPSHW--SRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             CcccCcchh--hhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            222222211  123668889999999999999999875

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=3e-30  Score=272.03  Aligned_cols=251  Identities=17%  Similarity=0.260  Sum_probs=175.2

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |++.+.||+|+||.||+|+. .++..||+|+++... ........+|+.+++++. |||++++++++.+...      ..
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~------~~   74 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKT------GR   74 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCC------Cc
Confidence            45678899999999999985 468999999986532 222234457888899885 9999999999987521      26


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||++ |++.+.+....  ..++|..+..++.+++.||+|||+.   +++||||||+||+++. +.+||+|||++.
T Consensus        75 ~~lv~e~~~-~~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~  147 (282)
T cd07831          75 LALVFELMD-MNLYELIKGRK--RPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCR  147 (282)
T ss_pred             EEEEEecCC-ccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEeccccc
Confidence            899999997 58888776532  3589999999999999999999997   8999999999999999 999999999986


Q ss_pred             cccccccc----c---cCCCC-CCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc----------
Q 004232          642 VSEDINSV----G---GKQED-PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ----------  702 (766)
Q Consensus       642 ~~~~~~~~----~---~~~~~-~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~----------  702 (766)
                      ........    +   ...++ .......+.++|||||||++|||++|..|+...... ...........          
T Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (282)
T cd07831         148 GIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFR  227 (282)
T ss_pred             ccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhc
Confidence            54322111    0   01111 111133466899999999999999999998643321 11111111000          


Q ss_pred             -cCccccccccccCCC----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          703 -EGRQRLVDPVVMATS----SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       703 -~~~~~~~d~~~~~~~----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ........+......    .......+.+++.+||+.+|++||+++++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         228 KSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             ccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence             000000011000000    0012345789999999999999999999975

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=2.3e-30  Score=280.39  Aligned_cols=257  Identities=16%  Similarity=0.264  Sum_probs=180.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++... .......+.+|+.++++++||||+++++++....-   ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~---~~~   80 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSF---ESF   80 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccc---ccc
Confidence            46789999999999999999985 57899999998643 23345667889999999999999999998765431   111


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++|+||+++ ++..++...    .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        81 ~~~~lv~e~~~~-~l~~~~~~~----~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~  152 (336)
T cd07849          81 NDVYIVQELMET-DLYKLIKTQ----HLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGL  152 (336)
T ss_pred             ceEEEEehhccc-CHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccc
Confidence            357999999985 787777532    488999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc--------cC-CCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc---
Q 004232          640 SIVSEDINSVG--------GK-QEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE---  703 (766)
Q Consensus       640 a~~~~~~~~~~--------~~-~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~---  703 (766)
                      +..........        .. ...|.   .....+.++|||||||++|||++|+.|+....... ...+.......   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~  232 (336)
T cd07849         153 ARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQE  232 (336)
T ss_pred             eeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHH
Confidence            86543211100        00 00111   11234567899999999999999999986432111 00011100000   


Q ss_pred             Ccccccccc---------ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 GRQRLVDPV---------VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 ~~~~~~d~~---------~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....+.+..         .......     .....+.+++.+||+.+|.+||++.|+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         233 DLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             HHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            000000000         0000000     012347899999999999999999999876

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.6e-30  Score=276.12  Aligned_cols=257  Identities=19%  Similarity=0.240  Sum_probs=177.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|+..+.||+|+||.||+|+.. +++.||||.++....  .....+.+|+.++++++ ||||+++++++......   .
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~---~   77 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKN---G   77 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCC---C
Confidence            36888899999999999999864 689999998764322  23457888999999995 69999999988765311   1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTP--GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~  635 (766)
                      ....++||||+++ +|.+++.....  ...+++.....++.||+.||+|||+.   +|+||||||+||+++. ++.+||+
T Consensus        78 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~  153 (295)
T cd07837          78 KPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIA  153 (295)
T ss_pred             CceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEe
Confidence            1247999999996 88888764322  24578999999999999999999987   8999999999999998 8899999


Q ss_pred             cCCCCcccccccc-c----c---cCCCC-CCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---cc
Q 004232          636 DYGLSIVSEDINS-V----G---GKQED-PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---QE  703 (766)
Q Consensus       636 DFGla~~~~~~~~-~----~---~~~~~-~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---~~  703 (766)
                      |||++........ .    .   ...++ .......+.++|||||||++|||+||..|+......  .....+..   ..
T Consensus       154 dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~--~~~~~~~~~~~~~  231 (295)
T cd07837         154 DLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSEL--QQLLHIFKLLGTP  231 (295)
T ss_pred             ecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHHHhCCC
Confidence            9999864321110 0    0   00111 001123466899999999999999999988643221  11111100   00


Q ss_pred             Ccc------cccc----ccccC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 GRQ------RLVD----PVVMA----TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~~~------~~~d----~~~~~----~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...      ...+    +....    .........+.+++.+|++.||.+||+++|++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         232 TEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             ChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000      0000    00000    000011234778999999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=2.4e-30  Score=269.70  Aligned_cols=236  Identities=19%  Similarity=0.271  Sum_probs=175.4

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||+++.. +|+.+|+|.+.....   ...+.+.+|++++++++||||+++++.+.+.        ...++||
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~--------~~~~lv~   72 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGK--------KNLYLVM   72 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecC--------cEEEEEE
Confidence            689999999999976 499999999875433   4466788999999999999999999988764        3689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++.+..   .+++..+..++.|++.||+|||+.   +++||||+|+||++++++.+||+|||++......
T Consensus        73 e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~  146 (265)
T cd05579          73 EYLPGGDLASLLENVG---SLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVR  146 (265)
T ss_pred             ecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccC
Confidence            9999999999987643   488999999999999999999987   8999999999999999999999999998543221


Q ss_pred             cc---------cc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          647 NS---------VG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       647 ~~---------~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ..         ..       ...++.......+.++||||||+++||++||+.|+.....  ......+.. .   ....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~--~~~~~~~~~-~---~~~~  220 (265)
T cd05579         147 RQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP--EEIFQNILN-G---KIEW  220 (265)
T ss_pred             cccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhc-C---CcCC
Confidence            10         00       0001111112245579999999999999999999864332  111111111 0   0000


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      +....     ....+.+++.+||+.+|++||++.+|.+.|+
T Consensus       221 ~~~~~-----~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         221 PEDVE-----VSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             Ccccc-----CCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            10000     1234678999999999999999976666554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.5e-30  Score=274.65  Aligned_cols=253  Identities=19%  Similarity=0.233  Sum_probs=179.5

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +|+..+.||+|+||.||+|+.. +|..||||+++.... ...+.+.+|+.++++++||||+++++++.+.+        .
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------~   72 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTEN--------K   72 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC--------c
Confidence            4778899999999999999964 689999999875432 23456778999999999999999999998764        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++ +|.+++........+++..+..++.|++.||+|||+.   +++||||||+||++++++.+|++|||++.
T Consensus        73 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          73 LMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             EEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhh
Confidence            7999999995 8888886554344589999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccc-----c---cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc--------
Q 004232          642 VSEDINSV-----G---GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE--------  703 (766)
Q Consensus       642 ~~~~~~~~-----~---~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~--------  703 (766)
                      ........     .   ...++.. .....+.++|||||||++|||++|+.|+....... ...........        
T Consensus       149 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (284)
T cd07836         149 AFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGI  228 (284)
T ss_pred             hhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHH
Confidence            43221110     0   1111110 11223567899999999999999999886432110 01000000000        


Q ss_pred             -CccccccccccCC------CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 -GRQRLVDPVVMAT------SSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 -~~~~~~d~~~~~~------~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ....+........      ........+.+++.+|++.||.+||++.||++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         229 SQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence             0000000000000      00011234678999999999999999999974

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=1e-30  Score=264.17  Aligned_cols=258  Identities=23%  Similarity=0.382  Sum_probs=194.6

Q ss_pred             HHHHHHHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccce
Q 004232          475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       475 ~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      .+++......+.....+-+|.||.||+|.|.      +.+.|-||.++.. .......+..|-..+..+.|||+.++.|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            3455555566888889999999999999654      3455777777654 34446678889889999999999999999


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhh-----cCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-----ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN  622 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~-----~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~  622 (766)
                      |.+..       ...+.+|.++.-|+|..+|.     +......++-.+...++.|++.|++|||.+   +|||.||.++
T Consensus       356 ~ie~~-------~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaR  425 (563)
T KOG1024|consen  356 SIEDY-------ATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAAR  425 (563)
T ss_pred             Eeecc-------CcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhh
Confidence            99864       35689999999999999997     222234467778888999999999999998   8999999999


Q ss_pred             ceEEcCCCcEEEecCCCCccc--ccccccccCCCCCCcccC--------CCCCCCEeehhHHHHHHhc-CCCccccCccc
Q 004232          623 NILLNEHRIAKLSDYGLSIVS--EDINSVGGKQEDPNSWEM--------TKLEDDVFSFGFMLLESVA-GPSVAARKGQF  691 (766)
Q Consensus       623 NILld~~~~~kl~DFGla~~~--~~~~~~~~~~~~~~~~~~--------~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~  691 (766)
                      |++||+..++|++|-.+++-.  .++...+.....|..|+.        ++..+|||||||+||||+| |+.|+.+-+.+
T Consensus       426 NCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPf  505 (563)
T KOG1024|consen  426 NCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPF  505 (563)
T ss_pred             cceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHH
Confidence            999999999999999999653  333333433334555533        4567899999999999998 78888654333


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ...   ....++  .++-.|.       .+..++..++..||+..|++||+|+|++..|.+..
T Consensus       506 Em~---~ylkdG--yRlaQP~-------NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  506 EME---HYLKDG--YRLAQPF-------NCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             HHH---HHHhcc--ceecCCC-------CCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            222   222222  2222221       22334788999999999999999999999998753

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=3.2e-30  Score=272.07  Aligned_cols=250  Identities=18%  Similarity=0.238  Sum_probs=177.3

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |+..+.||+|++|.||+|.. .+|..||+|++....  ....+.+.+|++++++++|||++++++++.+.+        .
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~--------~   72 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSEN--------K   72 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCC--------e
Confidence            56678999999999999985 479999999986543  223456788999999999999999999988653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||++ ++|.+++..... ..+++..+..++.++++||+|||+.   +++||||+|+||+++.++.+||+|||++.
T Consensus        73 ~~iv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~  147 (283)
T cd07835          73 LYLVFEFLD-LDLKKYMDSSPL-TGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLAR  147 (283)
T ss_pred             EEEEEeccC-cCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeeccccc
Confidence            899999995 689998875432 3589999999999999999999987   89999999999999999999999999986


Q ss_pred             cccccccc--------ccCCCCCCcc-cCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHHhhhhccc-------
Q 004232          642 VSEDINSV--------GGKQEDPNSW-EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EELDSLNSQE-------  703 (766)
Q Consensus       642 ~~~~~~~~--------~~~~~~~~~~-~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~~~~~~~~-------  703 (766)
                      ........        ....++.... ...+.++|||||||++|||+||+.||........  ..........       
T Consensus       148 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (283)
T cd07835         148 AFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGV  227 (283)
T ss_pred             ccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhh
Confidence            43221110        0111111111 2245679999999999999999999864332111  0000000000       


Q ss_pred             -----C---ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 -----G---RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 -----~---~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           .   ......+.... ........+.+++.+|++.+|.+||+++||++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         228 TSLPDYKPTFPKWARQDLSK-VVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhchhhhhhcccccccchhh-hcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                 0   00000000000 00001134778999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=1e-30  Score=284.01  Aligned_cols=199  Identities=26%  Similarity=0.373  Sum_probs=157.9

Q ss_pred             CCcCCceecCCceeEEEEE-ecCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +...+.||+|+||.||+|+ ..+|+.||||.++.. ....++...+|+++|++++|||||+++|.=.+..  ........
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~--~~~~~~~~   92 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKF--LGLVTRLP   92 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccc--cCcccccc
Confidence            3456789999999999999 678999999998763 3445677889999999999999999988643322  00112356


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCC--cEEEecCC
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN--EHR--IAKLSDYG  638 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld--~~~--~~kl~DFG  638 (766)
                      .+|||||++|||+..+.+-+....|+..+.+.+..+++.||.|||++   +|+||||||.||++-  ++|  .-||+|||
T Consensus        93 vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG  169 (732)
T KOG4250|consen   93 VLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFG  169 (732)
T ss_pred             eEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeeccc
Confidence            89999999999999998766556799999999999999999999987   899999999999984  334  48999999


Q ss_pred             CCccccccccccc---CCC----CCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          639 LSIVSEDINSVGG---KQE----DPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       639 la~~~~~~~~~~~---~~~----~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      .|+..++......   +..    +... -..++..+|.|||||++||.+||..||...
T Consensus       170 ~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  170 AARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             ccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence            9998876543322   211    1111 245666789999999999999999998643

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1e-30  Score=271.83  Aligned_cols=241  Identities=17%  Similarity=0.253  Sum_probs=183.0

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +-|++.+.||+|.|++|-.|+ .-+|+.||||++.+.+.  .....+.+|+..|+-++|||||+||.+.-..        
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQ--------   89 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQ--------   89 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhccc--------
Confidence            447778899999999999998 46899999999987653  3356788899999999999999999876543        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFG  638 (766)
                      ..+|||+|.-.+|+|++||.++..+  +...-..+++.||..|+.|+|+-   .+|||||||+||..-+ -|-+|++|||
T Consensus        90 TKlyLiLELGD~GDl~DyImKHe~G--l~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFG  164 (864)
T KOG4717|consen   90 TKLYLILELGDGGDLFDYIMKHEEG--LNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFG  164 (864)
T ss_pred             ceEEEEEEecCCchHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeecc
Confidence            3799999999999999999887643  77888889999999999999997   7899999999999875 4789999999


Q ss_pred             CCcccccccc-------cccCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINS-------VGGKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~-------~~~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ++-.......       .++..++.. .-.+-.++.||||+|||||-++.|+.||....+...           +..++|
T Consensus       165 FSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSET-----------LTmImD  233 (864)
T KOG4717|consen  165 FSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSET-----------LTMIMD  233 (864)
T ss_pred             ccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhh-----------hhhhhc
Confidence            9844332211       111111111 112334578999999999999999999976543211           122233


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      -..-.  +..-..++.+|+..+++.||++|-+.+||+..
T Consensus       234 CKYtv--PshvS~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  234 CKYTV--PSHVSKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             ccccC--chhhhHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence            22111  11223457899999999999999999999753

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.9e-30  Score=265.09  Aligned_cols=239  Identities=21%  Similarity=0.382  Sum_probs=181.9

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+.. +++.||+|.+.....  ...+.+.+|++++++++|||++++++++.+.+        
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   72 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSD--------   72 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCC--------
Confidence            4677889999999999999854 688999999976543  45678999999999999999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++++|.+++...   ..+++..+..++.+++.|+.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~---~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~  146 (254)
T cd06627          73 SLYIILEYAENGSLRQIIKKF---GPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVA  146 (254)
T ss_pred             EEEEEEecCCCCcHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccc
Confidence            689999999999999998754   3489999999999999999999987   8999999999999999999999999998


Q ss_pred             ccccccccc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........     +   ...++......++.++||||+|+++|||++|..|+......  ........ .....+    
T Consensus       147 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~--~~~~~~~~-~~~~~~----  219 (254)
T cd06627         147 TKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPM--AALFRIVQ-DDHPPL----  219 (254)
T ss_pred             eecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHH--HHHHHHhc-cCCCCC----
Confidence            654332211     0   01111111123456899999999999999999998643221  11111111 111111    


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ....    ...+.+++.+|+..+|++||++.+++.
T Consensus       220 -~~~~----~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         220 -PEGI----SPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             -CCCC----CHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence             1111    123678899999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=4e-30  Score=277.56  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=174.9

Q ss_pred             CceecC--CceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEG--SYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      ..||+|  +||+||+++. .+|+.||||.+....  ....+.+++|+.+++.++||||++++++|...+        ..+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~--------~~~   75 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGS--------WLW   75 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCC--------ceE
Confidence            356666  9999999985 479999999986432  334577899999999999999999999998753        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||+++|++.+++.+... ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||.+...
T Consensus        76 ~v~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~  151 (328)
T cd08226          76 VISPFMAYGSANSLLKTYFP-EGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSL  151 (328)
T ss_pred             EEEecccCCCHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhh
Confidence            99999999999998876432 3478888889999999999999987   8999999999999999999999999864221


Q ss_pred             ccccc---c---------ccC-CCCCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC--
Q 004232          644 EDINS---V---------GGK-QEDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG--  704 (766)
Q Consensus       644 ~~~~~---~---------~~~-~~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~--  704 (766)
                      .....   .         ... ...|...    ..++.++|||||||++|||++|+.|+...... ......+.....  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~-~~~~~~~~~~~~~~  230 (328)
T cd08226         152 VRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRT-QMLLQKLKGPPYSP  230 (328)
T ss_pred             hccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChH-HHHHHHhcCCCCCC
Confidence            11000   0         000 0111111    12456789999999999999999998642211 110110000000  


Q ss_pred             ---------------------------------ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 ---------------------------------RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ---------------------------------~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                                       ...+.+..............+.+++.+||+.||.+|||++|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~  308 (328)
T cd08226         231 LDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSH  308 (328)
T ss_pred             ccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence                                             000001111111112234568899999999999999999999865

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=4.4e-30  Score=271.01  Aligned_cols=251  Identities=18%  Similarity=0.302  Sum_probs=177.5

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |++.+.||+|+||+||+|+.. +++.||||++..... .......+|+..+++++ ||||+++++++.+.+        .
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~--------~   72 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREND--------E   72 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCC--------c
Confidence            556789999999999999975 578999999865422 22334557899999999 999999999988753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+ +|+|.+++.... ...++|..+..++.+++.||.|||+.   +++|+||||+||++++++.+||+|||++.
T Consensus        73 ~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          73 LYFVFEYM-EGNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             EEEEEecC-CCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccce
Confidence            89999999 889999887653 23579999999999999999999997   89999999999999999999999999986


Q ss_pred             cccccccc----cc---CCCC-CCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcc----------
Q 004232          642 VSEDINSV----GG---KQED-PNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQ----------  702 (766)
Q Consensus       642 ~~~~~~~~----~~---~~~~-~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~----------  702 (766)
                      ........    +.   ..++ .......+.++||||||+++|||++|+.|+....... ..........          
T Consensus       148 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (283)
T cd07830         148 EIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGY  227 (283)
T ss_pred             eccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHh
Confidence            54332111    11   1111 1112234678999999999999999998885432211 0000000000          


Q ss_pred             --cCccccccccccCCC----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          703 --EGRQRLVDPVVMATS----SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       703 --~~~~~~~d~~~~~~~----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        .......-+......    .......+.+++.+||+.+|++||+++||+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         228 KLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             hhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence              000000000000000    0011245789999999999999999999975

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=7.5e-30  Score=266.08  Aligned_cols=230  Identities=16%  Similarity=0.251  Sum_probs=172.1

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||+|+.. +++.||+|.+....   ....+.+.+|+.++++++||||+++++++.++.        ..++|+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~~lv~   72 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKK--------YIYMLM   72 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCC--------ccEEEE
Confidence            699999999999965 58999999986532   234567899999999999999999999887653        689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +++|+||||+||+++.++.+|++|||++......
T Consensus        73 e~~~~~~L~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~  146 (262)
T cd05572          73 EYCLGGELWTILRDRG---LFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSG  146 (262)
T ss_pred             ecCCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCcc
Confidence            9999999999997643   378888999999999999999996   8999999999999999999999999998655332


Q ss_pred             ccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCH
Q 004232          647 NSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL  719 (766)
Q Consensus       647 ~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  719 (766)
                      ...       ...+++.......+.++|+||||+++|||++|..|+.............+........  -|.       
T Consensus       147 ~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~-------  217 (262)
T cd05572         147 QKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLE--FPN-------  217 (262)
T ss_pred             cccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCC--CCc-------
Confidence            110       0111111112334667899999999999999999986443212222222211010001  010       


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCH
Q 004232          720 ESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       720 ~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      .....+.+++.+||+.+|++||++
T Consensus       218 ~~~~~~~~~i~~~l~~~p~~R~~~  241 (262)
T cd05572         218 YIDKAAKDLIKQLLRRNPEERLGN  241 (262)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCC
Confidence            012347889999999999999993

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=4.6e-30  Score=280.02  Aligned_cols=256  Identities=18%  Similarity=0.242  Sum_probs=180.5

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..+.|+..+.||+|+||.||+|+. .+|+.||||.+...  .......+.+|+.++++++||||+++++++.......  
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--   91 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLE--   91 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcc--
Confidence            346788899999999999999985 47899999998643  2334466778999999999999999999886543111  


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+.+ +|.+.+...     +++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        92 ~~~~~~lv~e~~~~-~l~~~~~~~-----l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Df  162 (353)
T cd07850          92 EFQDVYLVMELMDA-NLCQVIQMD-----LDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF  162 (353)
T ss_pred             ccCcEEEEEeccCC-CHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccC
Confidence            11357999999975 788777532     77888889999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---------
Q 004232          638 GLSIVSEDINSVG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---------  701 (766)
Q Consensus       638 Gla~~~~~~~~~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---------  701 (766)
                      |++..........       ...++.......+.++|||||||++|||++|+.||......  ..+..+..         
T Consensus       163 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~  240 (353)
T cd07850         163 GLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHI--DQWNKIIEQLGTPSDEF  240 (353)
T ss_pred             ccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHhcCCCCHHH
Confidence            9996543321110       01111111234566899999999999999999998643211  11111100         


Q ss_pred             -------------ccC------cccccccccc----CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 -------------QEG------RQRLVDPVVM----ATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 -------------~~~------~~~~~d~~~~----~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                   ...      ..+.......    ..........+.+++.+|++.||++||++.|++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         241 MSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                         000      0000000000    00011123457799999999999999999999865

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.5e-30  Score=265.73  Aligned_cols=242  Identities=21%  Similarity=0.303  Sum_probs=178.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-----hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-----KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|++.+.||+|+||.||+|+. .++..||+|.+...     .....+.+++|++++++++||||+++++++.+..+   
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~---   78 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEE---   78 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCC---
Confidence            4688899999999999999985 46899999987432     12345678899999999999999999998876431   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ...++|+||+++++|.+++....   .+++.....++.+++.|+.|||+.   +++||||||+||+++.++.+||+|
T Consensus        79 ---~~~~~v~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~d  149 (264)
T cd06653          79 ---KKLSIFVEYMPGGSIKDQLKAYG---ALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGD  149 (264)
T ss_pred             ---CEEEEEEEeCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECc
Confidence               35789999999999999987543   378888899999999999999987   899999999999999999999999


Q ss_pred             CCCCcccccccc-------c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINS-------V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~-------~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||++........       . +   +..++.......+.++|||||||++|||++|+.|+.....  ...+.........
T Consensus       150 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~  227 (264)
T cd06653         150 FGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA--MAAIFKIATQPTK  227 (264)
T ss_pred             cccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH--HHHHHHHHcCCCC
Confidence            999864321100       0 0   0111111112345678999999999999999999864221  1112222111111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           +.+...    ....+.+++.+||. +|.+||+..+++.
T Consensus       228 -----~~~p~~----~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         228 -----PMLPDG----VSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             -----CCCCcc----cCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence                 111111    11336788999999 5799999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=4.4e-30  Score=274.68  Aligned_cols=261  Identities=16%  Similarity=0.226  Sum_probs=178.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|+..+.||+|+||.||+|+.. +++.||||++....  ......+.+|++++++++||||++++++|...+......
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            356888999999999999999864 68999999886432  222345678999999999999999999988754211111


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+++ ++.+.+....  ..+++.+...++.|++.||+|||++   +++||||||+||+++.++.+||+|||
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKN--VKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCC
Confidence            2357999999975 7887776432  2478999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc---------c---cCCCCCCcc-cCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc--
Q 004232          639 LSIVSEDINSV---------G---GKQEDPNSW-EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ--  702 (766)
Q Consensus       639 la~~~~~~~~~---------~---~~~~~~~~~-~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~--  702 (766)
                      ++.........         +   ..+++.... ...+.++|||||||++|||+||..|+...... ....+..+...  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT  244 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            98654221110         0   011110011 12456799999999999999999888643221 11111111100  


Q ss_pred             -cCcc-----ccccccccCCC----------CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          703 -EGRQ-----RLVDPVVMATS----------SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       703 -~~~~-----~~~d~~~~~~~----------~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       +...     ...+.......          .......+.+++.+||..||.+||+++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         245 PEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             hhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence             0000     00000000000          0001134678999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.97  E-value=6.4e-32  Score=263.89  Aligned_cols=239  Identities=22%  Similarity=0.316  Sum_probs=181.5

Q ss_pred             CCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      |++.+.||+|+||.||||. .+.|..||||++...  .+.+++..|+.+|.+.+.|++|++||.+....        .+|
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~s--------DLW  104 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHS--------DLW  104 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCC--------ceE
Confidence            5667899999999999997 457999999998764  35688999999999999999999999776542        589


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|||||..|+..+.++-+  .+++...+...+.....+||+|||..   .=+|||||+.|||++.+|.+|++|||+|...
T Consensus       105 IVMEYCGAGSiSDI~R~R--~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQL  179 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRAR--RKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQL  179 (502)
T ss_pred             eehhhcCCCcHHHHHHHh--cCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchh
Confidence            999999999999998755  36799999999999999999999986   4589999999999999999999999999665


Q ss_pred             ccccccccCCCCCCccc--------CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          644 EDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       644 ~~~~~~~~~~~~~~~~~--------~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .++.....+.-....|+        .+..++|+||+|+...||..|++|+..-..     .+.+.-   +..-..|..  
T Consensus       180 TDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHP-----MRAIFM---IPT~PPPTF--  249 (502)
T KOG0574|consen  180 TDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHP-----MRAIFM---IPTKPPPTF--  249 (502)
T ss_pred             hhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccc-----cceeEe---ccCCCCCCC--
Confidence            44322111111122343        355689999999999999999999863111     011100   000011111  


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+++-....-+++..|+...|++|-|+.++++
T Consensus       250 ~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  250 KKPEEWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             CChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            112233445788999999999999998877654

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=4.3e-30  Score=273.85  Aligned_cols=263  Identities=20%  Similarity=0.281  Sum_probs=181.6

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ...++|++.+.||+|+||.||+|... +|+.||||.++...  ......+.+|++++++++||||+++++++.+......
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            34678999999999999999999965 68999999986432  2234567889999999999999999999876430000


Q ss_pred             c--CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          557 Y--AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       557 ~--~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                      .  .....++|+||+++ ++...+...  ...+++.....++.+++.||+|||+.   +|+||||||+||++++++.+||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl  157 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKL  157 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEe
Confidence            0  01268999999987 676666543  23488999999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCcccccccccc--c---C--CCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc
Q 004232          635 SDYGLSIVSEDINSVG--G---K--QEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE  703 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~--~---~--~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~  703 (766)
                      +|||++..........  .   .  ...|.   .....+.++|||||||++|||++|+.|+....... ...+.......
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
T cd07864         158 ADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSP  237 (302)
T ss_pred             CcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCC
Confidence            9999986543221100  0   0  01111   11234567999999999999999999986433211 11111111100


Q ss_pred             C---ccccc--------cccccC-----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 G---RQRLV--------DPVVMA-----TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~---~~~~~--------d~~~~~-----~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .   ...+.        ++....     .........+.+++.+||+.+|++||++.+|+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         238 CPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             ChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0   00000        000000     000001234789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=7.7e-30  Score=268.75  Aligned_cols=236  Identities=20%  Similarity=0.285  Sum_probs=167.8

Q ss_pred             ceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHH---HHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          490 IMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLD---LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~---~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +||+|+||.||++.. .+++.+|+|.+.....   .....+.+|..   ++...+||||+.+++++.+.+        ..
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~   72 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPD--------KL   72 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCC--------eE
Confidence            489999999999986 4689999998865321   11223334443   334457999999998887653        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+||++++++.+|++|||++..
T Consensus        73 ~lv~e~~~~~~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~  146 (279)
T cd05633          73 CFILDLMNGGDLHYHLSQHG---VFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD  146 (279)
T ss_pred             EEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCccee
Confidence            99999999999999887543   489999999999999999999997   899999999999999999999999999854


Q ss_pred             ccccccc---ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          643 SEDINSV---GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       643 ~~~~~~~---~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      .......   +... ..|..   ....+.++|||||||++|||+||..||.................      .++.+..
T Consensus       147 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~------~~~~~~~  220 (279)
T cd05633         147 FSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT------VNVELPD  220 (279)
T ss_pred             ccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc------CCcCCcc
Confidence            3321111   1100 01111   12356689999999999999999999864322222222211110      0111111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                      ..    ...+.+++.+|++.||++||     +++|+++.
T Consensus       221 ~~----~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         221 SF----SPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             cc----CHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            11    23467888999999999999     58888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.97  E-value=1e-29  Score=271.79  Aligned_cols=241  Identities=24%  Similarity=0.327  Sum_probs=176.2

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |+..+.||+|+||.||+|+. .++..||+|.+...   .....+++.+|++++++++|||++++++++.+..        
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   88 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH--------   88 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCC--------
Confidence            55667899999999999985 46889999988642   2234567888999999999999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+. |++.+.+....  ..+++..+..++.+++.|+.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        89 ~~~lv~e~~~-~~l~~~~~~~~--~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~  162 (308)
T cd06634          89 TAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSA  162 (308)
T ss_pred             eeEEEEEccC-CCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccc
Confidence            6899999997 68877765432  3478889999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          641 IVSEDINSVGGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       641 ~~~~~~~~~~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........+..  ..|..     ....+.++|||||||++|||++|+.|+......  .....+.... .....    
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~-~~~~~----  235 (308)
T cd06634         163 SIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQNE-SPALQ----  235 (308)
T ss_pred             eeecCcccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHH--HHHHHHhhcC-CCCcC----
Confidence            6543221111110  01111     123456899999999999999999987532211  1111111110 11100    


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       .   ......+.+++.+||+.+|.+||++.+|++.-
T Consensus       236 -~---~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~  268 (308)
T cd06634         236 -S---GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR  268 (308)
T ss_pred             -c---ccccHHHHHHHHHHhhCCcccCCCHHHHhhCc
Confidence             0   01123367889999999999999999998764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=254.91  Aligned_cols=244  Identities=18%  Similarity=0.316  Sum_probs=180.5

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++.|++.++||+|.|+.||++. .++|+.+|+|.+...+  ....+++++|+.|.+.++|||||+|..-+.+.+      
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~------   83 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES------   83 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccc------
Confidence            4567778899999999999986 4679999999886543  345788999999999999999999998766543      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~~kl~  635 (766)
                        ..|||+|+|.+|+|..-+-++   ...+....-.++.||.++|.|+|.+   +|||||+||+|+|+...   --+|++
T Consensus        84 --~~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~  155 (355)
T KOG0033|consen   84 --FHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLA  155 (355)
T ss_pred             --eeEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeec
Confidence              789999999999997655433   2345566677899999999999998   89999999999999743   359999


Q ss_pred             cCCCCcccccccccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          636 DYGLSIVSEDINSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      |||+|+...+.....+..+.|.       ...+++..+|||+.|||||-++.|..||.....  .+.+..+..  ...++
T Consensus       156 ~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~--~rlye~I~~--g~yd~  231 (355)
T KOG0033|consen  156 DFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYEQIKA--GAYDY  231 (355)
T ss_pred             ccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH--HHHHHHHhc--cccCC
Confidence            9999987663322222222222       234566788999999999999999999874221  121222211  12233


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..|.+ ....+    ...+|+.+++..||.+|-|+.|.++
T Consensus       232 ~~~~w-~~is~----~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  232 PSPEW-DTVTP----EAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             CCccc-CcCCH----HHHHHHHHHhccChhhhccHHHHhC
Confidence            22232 22222    2568899999999999999988764

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=9.6e-30  Score=272.81  Aligned_cols=248  Identities=18%  Similarity=0.208  Sum_probs=173.0

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      .+.+|.|+++.||+++. +++.||||++...  .....+.+.+|++++++++||||+++++++.+.+        ..+++
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~--------~~~~~   77 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS--------ELYVV   77 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCC--------eEEEE
Confidence            34455556666666654 6899999998654  3445678999999999999999999999987653        68999


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccc
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED  645 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~  645 (766)
                      |||+++|+|.+++.+... ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||.+.....
T Consensus        78 ~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~  153 (314)
T cd08216          78 SPLMAYGSCEDLLKTHFP-EGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIK  153 (314)
T ss_pred             EeccCCCCHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeecc
Confidence            999999999999876432 3478888889999999999999997   899999999999999999999999998754321


Q ss_pred             ccc-------cc----cC--CCCCCc----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc------
Q 004232          646 INS-------VG----GK--QEDPNS----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ------  702 (766)
Q Consensus       646 ~~~-------~~----~~--~~~~~~----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~------  702 (766)
                      ...       ..    ..  ...|..    ...++.++|||||||++|||++|+.||...... ..........      
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~  232 (314)
T cd08216         154 HGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPAT-QMLLEKVRGTVPCLLD  232 (314)
T ss_pred             ccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCccccc
Confidence            110       00    00  001111    123456899999999999999999998643211 1111111000      


Q ss_pred             -c-------Cccc----cccccccC----CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 -E-------GRQR----LVDPVVMA----TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 -~-------~~~~----~~d~~~~~----~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       .       ....    ..++....    .........+.+++.+||+.||++|||++|+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         233 KSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             cCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence             0       0000    00110000    0011122457889999999999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=6.5e-30  Score=271.74  Aligned_cols=246  Identities=22%  Similarity=0.319  Sum_probs=176.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC-CceEEEEEccCCh-hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|...+ ++.||||.++... .....++.+|+.++.+.. ||||++++|+|.+..      
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~------   87 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDS------   87 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCC------
Confidence            3567888999999999999999764 8999999987543 233456667777777665 999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++ ++..+.....  ..+++..+..++.+++.|++|||+.  .+|+||||+|+||++++++.+||+|||
T Consensus        88 --~~~~v~e~~~~-~l~~l~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg  160 (296)
T cd06618          88 --DVFICMELMST-CLDKLLKRIQ--GPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFG  160 (296)
T ss_pred             --eEEEEeeccCc-CHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccc
Confidence              68999999864 6766654422  2588999999999999999999974  279999999999999999999999999


Q ss_pred             CCcccccccccccC-----CCCCCcc------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          639 LSIVSEDINSVGGK-----QEDPNSW------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       639 la~~~~~~~~~~~~-----~~~~~~~------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      ++............     ...|..+      ...+.++|||||||++|||++|+.|+...... .+....+... ....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~-~~~~  238 (296)
T cd06618         161 ISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-FEVLTKILQE-EPPS  238 (296)
T ss_pred             cchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-HHHHHHHhcC-CCCC
Confidence            98654321111000     0111111      12456899999999999999999998642211 1111111111 1111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +....   .    ....+.+++.+||+.||.+||++.+|++.
T Consensus       239 ~~~~~---~----~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         239 LPPNE---G----FSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             CCCCC---C----CCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            11100   1    11246789999999999999999999866

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=4.8e-30  Score=270.98  Aligned_cols=252  Identities=22%  Similarity=0.311  Sum_probs=179.3

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |++.+.||+|+||.||+|+.. +++.+|+|++....  ....+.+.+|++++++++|||++++++++.+.+      ...
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~------~~~   74 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKG------KGS   74 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCC------CCc
Confidence            556788999999999999865 58999999997653  333567888999999999999999999998752      126


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||+++ +|..++....  ..+++..+..++.++++||+|||+.   +++|+||||+||++++++.+||+|||++.
T Consensus        75 ~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~  148 (287)
T cd07840          75 IYMVFEYMDH-DLTGLLDSPE--VKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLAR  148 (287)
T ss_pred             EEEEeccccc-cHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEcccccee
Confidence            8999999985 8888876542  3588999999999999999999987   89999999999999999999999999986


Q ss_pred             ccccccc--c----c---cCCCCCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc---Cccc
Q 004232          642 VSEDINS--V----G---GKQEDPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE---GRQR  707 (766)
Q Consensus       642 ~~~~~~~--~----~---~~~~~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~---~~~~  707 (766)
                      .......  .    .   ...++... ....+.++|||||||++|||+||+.|+....... ...........   ....
T Consensus       149 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (287)
T cd07840         149 PYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPG  228 (287)
T ss_pred             eccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccc
Confidence            5433211  0    0   01111101 1234568999999999999999999986433211 11111100000   0000


Q ss_pred             ccc--------cccc------CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          708 LVD--------PVVM------ATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       708 ~~d--------~~~~------~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +.+        +...      ..........+.+++.+||..+|.+||++.++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         229 VSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             cccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            000        0000      0000001345789999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.6e-30  Score=264.95  Aligned_cols=240  Identities=18%  Similarity=0.220  Sum_probs=170.6

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHH-HHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDL-LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~-l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|.. .+|+.||||.++....   .....+..|..+ ....+|||++++++++.+.+        ..+
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--------~~~   73 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD--------YLY   73 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCC--------eEE
Confidence            4689999999999986 4689999999865432   222334455444 44558999999999987653        689


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||+++|+|.+++....   .+++.....++.|++.||.|||+.   +++||||+|+||++++++.+||+|||++...
T Consensus        74 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  147 (260)
T cd05611          74 LVMEYLNGGDCASLIKTLG---GLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNG  147 (260)
T ss_pred             EEEeccCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceec
Confidence            9999999999999987543   478888999999999999999997   8999999999999999999999999998653


Q ss_pred             cccccc----ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCH
Q 004232          644 EDINSV----GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL  719 (766)
Q Consensus       644 ~~~~~~----~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  719 (766)
                      ......    ....++......++.++||||||+++|||+||..|+.....  ...+..+.... . .. .+....    
T Consensus       148 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~-~-~~-~~~~~~----  218 (260)
T cd05611         148 LENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP--DAVFDNILSRR-I-NW-PEEVKE----  218 (260)
T ss_pred             cccccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhcc-c-CC-CCcccc----
Confidence            321111    11111111122356789999999999999999999864322  11111111100 0 00 000000    


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 004232          720 ESLSIVISIANKCICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       720 ~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~  751 (766)
                      .....+.+++.+||+.+|++||++.++.+.|.
T Consensus       219 ~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         219 FCSPEAVDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             cCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence            11234789999999999999998876655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=7.9e-30  Score=270.46  Aligned_cols=236  Identities=20%  Similarity=0.312  Sum_probs=175.8

Q ss_pred             CceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEE
Q 004232          489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      ..||+|+||.||+|.. .+++.||||++..........+.+|+.++++++||||+++++++...+        ..++|||
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~~lv~e   97 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--------ELWVVME   97 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC--------EEEEEEe
Confidence            5789999999999986 478999999986555555677899999999999999999999988753        7899999


Q ss_pred             ccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccc
Q 004232          568 FMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN  647 (766)
Q Consensus       568 y~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~  647 (766)
                      |+++++|.+++...    .+++.....++.+++.|++|||+.   +++||||||+||++++++.+||+|||++.......
T Consensus        98 ~~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~  170 (292)
T cd06657          98 FLEGGALTDIVTHT----RMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV  170 (292)
T ss_pred             cCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccc
Confidence            99999999987532    378899999999999999999997   89999999999999999999999999875432211


Q ss_pred             cc-----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCH
Q 004232          648 SV-----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL  719 (766)
Q Consensus       648 ~~-----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  719 (766)
                      ..     +   ...++.......+.++|||||||++|||++|..|+......  .....+. ......+..  . ..   
T Consensus       171 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~--~~~~~~~-~~~~~~~~~--~-~~---  241 (292)
T cd06657         171 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIR-DNLPPKLKN--L-HK---  241 (292)
T ss_pred             ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHH-hhCCcccCC--c-cc---
Confidence            00     0   11111111223456899999999999999999998632221  1111111 000000000  0 00   


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          720 ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       720 ~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ....+.+++.+||+.+|.+||++.+|++.
T Consensus       242 -~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         242 -VSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             -CCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence             11236688999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=3e-30  Score=276.79  Aligned_cols=193  Identities=19%  Similarity=0.341  Sum_probs=149.1

Q ss_pred             CCcCCceecCCceeEEEEEec---CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |++.+.||+|+||.||+|+..   ++..||+|.+....   ....+.+.+|+.++++++||||+++++++.+...     
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-----   76 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHAD-----   76 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCC-----
Confidence            677889999999999999964   47899999997633   3334667889999999999999999999987521     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC----CCcE
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTP--GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE----HRIA  632 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~----~~~~  632 (766)
                       ...++||||+++ ++.+.+.....  ...++......++.|++.|++|||+.   +|+||||||+||+++.    ++.+
T Consensus        77 -~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~  151 (316)
T cd07842          77 -KSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVV  151 (316)
T ss_pred             -ceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceE
Confidence             368999999986 66666543221  12577888899999999999999987   8999999999999999    8999


Q ss_pred             EEecCCCCccccccccc--c-----cCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          633 KLSDYGLSIVSEDINSV--G-----GKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~--~-----~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ||+|||++.........  .     ...  ..|..   ....+.++|||||||++|||++|+.|+..
T Consensus       152 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~  218 (316)
T cd07842         152 KIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKG  218 (316)
T ss_pred             EECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence            99999998654322110  0     000  01111   12345678999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=7.1e-30  Score=264.93  Aligned_cols=242  Identities=19%  Similarity=0.282  Sum_probs=181.9

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+++. .+++.+|+|.+....  .....++.+|++++++++||||+++++++.+..        
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------   72 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGN--------   72 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCC--------
Confidence            477788999999999999975 468899999987532  334567788999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..++|+||+++++|.+++.+.. ....+++.....++.+++.|++|||+.   +++||||+|+||++++++.+|++|||+
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~  149 (256)
T cd08530          73 KLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGI  149 (256)
T ss_pred             EEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccc
Confidence            7899999999999999886532 224588999999999999999999987   899999999999999999999999999


Q ss_pred             Cccccccccccc------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          640 SIVSEDINSVGG------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       640 a~~~~~~~~~~~------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      +...........      ..++......++.++|+||||+++|||++|+.|+......  .....+ .......+     
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~--~~~~~~-~~~~~~~~-----  221 (256)
T cd08530         150 SKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ--DLRYKV-QRGKYPPI-----  221 (256)
T ss_pred             hhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHH-hcCCCCCC-----
Confidence            865433211100      0111111233456899999999999999999998643321  111111 11111111     


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          .......+.+++.+|++.+|.+||++.|+++
T Consensus       222 ----~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         222 ----PPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             ----chhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                1122344789999999999999999999975

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=276.68  Aligned_cols=242  Identities=22%  Similarity=0.329  Sum_probs=183.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+..|.+...||+|.|++|..|+. .+|..||||.+.+..  ....+.+.+|+++|+.++|||||+++.+.....     
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~-----  128 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEA-----  128 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecc-----
Confidence            456788999999999999999985 469999999997653  333456899999999999999999999988653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .+|+||||+.+|.+++|+.++...   .......++.|+..|++|||++   .|+|||||++|||||.++++||+||
T Consensus       129 ---~lylV~eya~~ge~~~yl~~~gr~---~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDf  199 (596)
T KOG0586|consen  129 ---TLYLVMEYASGGELFDYLVKHGRM---KEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADF  199 (596)
T ss_pred             ---eeEEEEEeccCchhHHHHHhcccc---hhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeecc
Confidence               799999999999999999887542   3366777889999999999998   7899999999999999999999999


Q ss_pred             CCCccccccccccc---CCC----CC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGG---KQE----DP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~---~~~----~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++..........+   .++    +. .......+++|+||+||++|-|+.|.-||+..  .+...-.... . ...++ 
T Consensus       200 gfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~--~lk~Lr~rvl-~-gk~rI-  274 (596)
T KOG0586|consen  200 GFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ--NLKELRPRVL-R-GKYRI-  274 (596)
T ss_pred             ccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc--ccccccchhe-e-eeecc-
Confidence            99976643222111   111    11 11133456899999999999999999999732  2211100000 0 01111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       |..+.       ..+.+++.+.+..+|.+|+++++|.+.
T Consensus       275 -p~~ms-------~dce~lLrk~lvl~Pskr~~~dqim~~  306 (596)
T KOG0586|consen  275 -PFYMS-------CDCEDLLRKFLVLNPSKRGPCDQIMKD  306 (596)
T ss_pred             -cceee-------chhHHHHHHhhccCccccCCHHHhhhh
Confidence             11111       125678889999999999999999864

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=1.2e-29  Score=266.91  Aligned_cols=233  Identities=18%  Similarity=0.226  Sum_probs=169.9

Q ss_pred             eecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||+||++.. .+|+.||+|.+....   ....+.+..|++++++++||||+++++++...+        ..++||
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~~~lv~   72 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKD--------DLCLVM   72 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCC--------eEEEEE
Confidence            69999999999985 468999999986532   223455678999999999999999999887653        689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++|+|.+++.+... ..+++..+..++.+++.|+.|||+.   +++||||||+||++++++.+|++|||++......
T Consensus        73 e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~  148 (277)
T cd05577          73 TLMNGGDLKYHIYNVGE-PGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG  148 (277)
T ss_pred             ecCCCCcHHHHHHHcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccC
Confidence            99999999999876542 3588999999999999999999997   8999999999999999999999999998654321


Q ss_pred             ccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccccccccccCCCC
Q 004232          647 NSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLVDPVVMATSS  718 (766)
Q Consensus       647 ~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~  718 (766)
                      ...       ....++.......+.++|||||||++|||++|+.|+...... ....+...... ....     ..... 
T Consensus       149 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~-  221 (277)
T cd05577         149 KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLE-MAVE-----YPDKF-  221 (277)
T ss_pred             CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhcccc-cccc-----CCccC-
Confidence            110       011111111123556799999999999999999998643321 11111111000 0000     00111 


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHH
Q 004232          719 LESLSIVISIANKCICSESWSRPSFED  745 (766)
Q Consensus       719 ~~~~~~~~~l~~~C~~~~p~~RPs~~e  745 (766)
                         ...+.+++.+||+.+|.+||+++|
T Consensus       222 ---~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         222 ---SPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             ---CHHHHHHHHHHccCChhHccCCCc
Confidence               123678899999999999995555

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=4.6e-30  Score=276.84  Aligned_cols=256  Identities=20%  Similarity=0.309  Sum_probs=180.3

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ...+++|+..+.||+|+||.||+|+. .+++.||||++...  .....+.+.+|++++++++||||+++++++...+   
T Consensus         6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~---   82 (328)
T cd07856           6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPL---   82 (328)
T ss_pred             eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC---
Confidence            34678899999999999999999984 47899999987542  2233567888999999999999999999887643   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                          ...++|+||+ +++|..++...    .+++.....++.++++||+|||+.   +|+||||||+||++++++.+||+
T Consensus        83 ----~~~~lv~e~~-~~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~  150 (328)
T cd07856          83 ----EDIYFVTELL-GTDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKIC  150 (328)
T ss_pred             ----CcEEEEeehh-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeC
Confidence                3579999998 46898887642    367788888999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccc--c---cCCCCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhc-------
Q 004232          636 DYGLSIVSEDINSV--G---GKQEDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNS-------  701 (766)
Q Consensus       636 DFGla~~~~~~~~~--~---~~~~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~-------  701 (766)
                      |||++.........  +   ...++. .....++.++|||||||++|||+||+.|+....... ...+.....       
T Consensus       151 dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~  230 (328)
T cd07856         151 DFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVI  230 (328)
T ss_pred             ccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            99998654321110  0   111111 111235667999999999999999999886432110 000000000       


Q ss_pred             ----ccCcccccccc-ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 ----QEGRQRLVDPV-VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ----~~~~~~~~d~~-~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          .....++.... .....+.     .....+.+++.+|++.+|++||++.+++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         231 NTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                00000000000 0000000     011347789999999999999999999876

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=7e-30  Score=273.26  Aligned_cols=256  Identities=18%  Similarity=0.245  Sum_probs=179.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|... +|+.||+|.++....  .....+.+|+.++++++|+||+++++++.+...     
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~-----   80 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHL-----   80 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCC-----
Confidence            467889999999999999999864 689999999864322  223356679999999999999999999875421     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       +..++||||+++ +|.+++....  ..+++..+..++.|++.|++|||+.   +++||||||+||++++++.+||+|||
T Consensus        81 -~~~~lv~e~~~~-~l~~~l~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg  153 (309)
T cd07845          81 -DSIFLVMEYCEQ-DLASLLDNMP--TPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFG  153 (309)
T ss_pred             -CeEEEEEecCCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccc
Confidence             357999999975 7888776532  3589999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc--------cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc--C--
Q 004232          639 LSIVSEDINSVG--------GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE--G--  704 (766)
Q Consensus       639 la~~~~~~~~~~--------~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~--~--  704 (766)
                      ++..........        +..++.. .....+.++|||||||++|||++|+.|+....... ...+.......  .  
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~  233 (309)
T cd07845         154 LARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIW  233 (309)
T ss_pred             eeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhc
Confidence            986543221100        0111110 11234567999999999999999999986432211 11111100000  0  


Q ss_pred             --------ccccc-cccccCCCC---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 --------RQRLV-DPVVMATSS---LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 --------~~~~~-d~~~~~~~~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                              ...+. .........   ......+.+++.+|++.||++|||+.||++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         234 PGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             hhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                    00000 000000000   0012346789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=1.7e-29  Score=262.10  Aligned_cols=242  Identities=20%  Similarity=0.322  Sum_probs=183.6

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||++... ++..||+|++....  ....+.+.+|++++++++|||++++++.+.+.+        
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~--------   72 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKG--------   72 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCC--------
Confidence            4777889999999999999964 68899999987543  245677889999999999999999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..++|+||+++++|.+++.+.. ....+++.....++.+++.|++|||+.   +++|+||+|+||++++++.+||+|||+
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~  149 (258)
T cd08215          73 KLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGI  149 (258)
T ss_pred             EEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccc
Confidence            6899999999999999987642 124589999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +..........        ...++.......+.++||||+|+++|||++|+.|+.....  ......... .....+   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~--~~~~~~~~~-~~~~~~---  223 (258)
T cd08215         150 SKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL--LELALKILK-GQYPPI---  223 (258)
T ss_pred             eeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH--HHHHHHHhc-CCCCCC---
Confidence            86543322110        0111111123355689999999999999999999864331  111111111 111111   


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ....    ...+.+++.+||..+|++||++.|+++
T Consensus       224 --~~~~----~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         224 --PSQY----SSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             --CCCC----CHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence              1111    133678999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.4e-29  Score=274.89  Aligned_cols=261  Identities=16%  Similarity=0.260  Sum_probs=181.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|...+.||+|+||.||+|+. .+|+.||||++....  ......+.+|++++++++||||+++++++......  ..
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~--~~   91 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSG--DE   91 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccC--CC
Confidence            36788899999999999999985 478999999986432  22345678899999999999999999998754311  11


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++|+||+.. ++..+..     ..+++.....++.+++.||+|||+.   +++||||||+||+++.++.+|++|||
T Consensus        92 ~~~~~lv~e~~~~-~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg  162 (342)
T cd07879          92 FQDFYLVMPYMQT-DLQKIMG-----HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFG  162 (342)
T ss_pred             CceEEEEeccccc-CHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCC
Confidence            2357999999975 7766542     2378889999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc--c---cCCCCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc--C------
Q 004232          639 LSIVSEDINSV--G---GKQEDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE--G------  704 (766)
Q Consensus       639 la~~~~~~~~~--~---~~~~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~--~------  704 (766)
                      +++........  +   ...++. ......+.++|||||||++|||++|+.||.....  ...+..+....  .      
T Consensus       163 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~  240 (342)
T cd07879         163 LARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY--LDQLTQILKVTGVPGPEFVQ  240 (342)
T ss_pred             CCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCCHHHHH
Confidence            98654321110  0   011111 1112356689999999999999999999874321  11111110000  0      


Q ss_pred             ------cccccc--ccccCCC-C---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHHh
Q 004232          705 ------RQRLVD--PVVMATS-S---LESLSIVISIANKCICSESWSRPSFEDILWN--LQYAAQ  755 (766)
Q Consensus       705 ------~~~~~d--~~~~~~~-~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~~  755 (766)
                            .....+  +...... .   ......+.+++.+||+.||.+||+++||+..  ++....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         241 KLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             HhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence                  000000  0000000 0   0011346789999999999999999999855  655543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.5e-29  Score=274.16  Aligned_cols=261  Identities=18%  Similarity=0.280  Sum_probs=182.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +.|.+.+.||+|+||.||+|+. .++..||||++...  .......+.+|+.++++++||||+++++++......   ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~---~~   81 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHRE---AF   81 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheeccccc---cc
Confidence            4688889999999999999985 46899999998653  223345677899999999999999999988754211   11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++|+||+. ++|.+++....   .+++.....++.+++.||.|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~  154 (337)
T cd07858          82 NDVYIVYELMD-TDLHQIIRSSQ---TLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGL  154 (337)
T ss_pred             CcEEEEEeCCC-CCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCcc
Confidence            35799999997 68888886542   488999999999999999999987   899999999999999999999999999


Q ss_pred             Cccccccccc-----ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcc---cCc-
Q 004232          640 SIVSEDINSV-----GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQ---EGR-  705 (766)
Q Consensus       640 a~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~---~~~-  705 (766)
                      +.........     +... ..|..   ....+.++|||||||++|||++|+.||....... ...+......   ... 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07858         155 ARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLG  234 (337)
T ss_pred             ccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhh
Confidence            8654322110     0000 01111   1235568999999999999999999986432110 0000000000   000 


Q ss_pred             -------ccc-------ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHH
Q 004232          706 -------QRL-------VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN--LQYAA  754 (766)
Q Consensus       706 -------~~~-------~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~  754 (766)
                             .+.       .++.... ........+.+++.+||+.+|++||+++|+++.  ++...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         235 FIRNEKARRYIRSLPYTPRQSFAR-LFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             hcCchhhhHHHHhcCcccccCHHH-HcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhc
Confidence                   000       0000000 000122447899999999999999999999977  55443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=9.5e-30  Score=272.20  Aligned_cols=261  Identities=16%  Similarity=0.261  Sum_probs=178.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||++.....  .....+.+|++++++++||||+++++++.+..+.....
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            478999999999999999999864 689999998854322  22345678999999999999999999887654211111


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ...+++|+||+.+ ++...+....  ..+++.....++.++++||+|||+.   +|+||||||+||++++++.+||+|||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS--VKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCc
Confidence            2358999999986 6766665432  3488999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc-------------------cCCCCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHh
Q 004232          639 LSIVSEDINSVG-------------------GKQEDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELD  697 (766)
Q Consensus       639 la~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~  697 (766)
                      ++..........                   ...++. ......+.++|||||||++|||++|+.|+....... ...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~  240 (311)
T cd07866         161 LARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIF  240 (311)
T ss_pred             cchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            986543211100                   000110 011234567899999999999999999986432211 11111


Q ss_pred             hhhccc---------Ccccccccccc---CCCCH----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          698 SLNSQE---------GRQRLVDPVVM---ATSSL----ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       698 ~~~~~~---------~~~~~~d~~~~---~~~~~----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......         ......+....   .....    .....+.+++.+|++.||.+|||+.|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         241 KLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             HHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            100000         00000000000   00000    11245789999999999999999999864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.9e-29  Score=272.58  Aligned_cols=260  Identities=17%  Similarity=0.248  Sum_probs=185.8

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|++.+.||+|+||.||+|+.. +++.||||++....  ....+.+.+|+.++++++||||+++++++.+...   ....
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~---~~~~   77 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSP---EDFN   77 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCc---cccc
Confidence            4777899999999999999964 58999999987543  3445778999999999999999999999887531   1123


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++ +|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        78 ~~~lv~e~~~~-~l~~~l~~~~---~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~  150 (330)
T cd07834          78 DVYIVTELMET-DLHKVIKSPQ---PLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLA  150 (330)
T ss_pred             ceEEEecchhh-hHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCce
Confidence            68999999994 8988886543   588999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc----c----c---cCCCCCCccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-c----
Q 004232          641 IVSEDINS----V----G---GKQEDPNSWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-E----  703 (766)
Q Consensus       641 ~~~~~~~~----~----~---~~~~~~~~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~----  703 (766)
                      ........    .    +   ...++..... ..+.++|||||||++|||++|+.||......  .....+... +    
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~~~~  228 (330)
T cd07834         151 RGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYI--DQLNLIVEVLGTPSE  228 (330)
T ss_pred             EeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHHhcCCCCh
Confidence            65433210    0    0   0111111112 4566899999999999999999998643321  111111000 0    


Q ss_pred             ---------Cccccccc-cccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHHh
Q 004232          704 ---------GRQRLVDP-VVMATSS-----LESLSIVISIANKCICSESWSRPSFEDILWN--LQYAAQ  755 (766)
Q Consensus       704 ---------~~~~~~d~-~~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~~  755 (766)
                               ........ .......     ......+.+++.+||+.+|.+||++.+++..  ++....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         229 EDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             hHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence                     00000000 0000000     0012347789999999999999999999986  665544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.97  E-value=2.4e-29  Score=265.77  Aligned_cols=254  Identities=20%  Similarity=0.241  Sum_probs=175.6

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhC---CCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |++.+.||+|+||.||+|+.. ++..||+|.++....  .....+.+|+.+++++   +|||++++++++.+.+..   .
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~---~   77 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTD---R   77 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCC---C
Confidence            566789999999999999976 489999999864322  2234566787777665   699999999999875411   1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....+++|||+++ +|.+++..... ..+++..+..++.+++.||+|||+.   +++|+||||+||++++++.+||+|||
T Consensus        78 ~~~~~l~~e~~~~-~l~~~l~~~~~-~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg  152 (287)
T cd07838          78 ELKLTLVFEHVDQ-DLATYLSKCPK-PGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFG  152 (287)
T ss_pred             CceeEEEehhccc-CHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccC
Confidence            1248999999985 89888865432 3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc----ccC---
Q 004232          639 LSIVSEDINSVG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS----QEG---  704 (766)
Q Consensus       639 la~~~~~~~~~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~----~~~---  704 (766)
                      ++..........       ...++.......+.++|||||||++|||+||..|+.....  .+....+..    ...   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  230 (287)
T cd07838         153 LARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSE--ADQLDKIFDVIGLPSEEEW  230 (287)
T ss_pred             cceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCCh--HHHHHHHHHHcCCCChHhc
Confidence            986543221110       0111111123456689999999999999999888764321  111111110    000   


Q ss_pred             ccc------cccccccCCC---CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQR------LVDPVVMATS---SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~------~~d~~~~~~~---~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...      ..........   ..+-...+.+++.+||+.||++||++.|++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         231 PRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             CCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            000      0000000000   0111245678999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=3.5e-29  Score=268.29  Aligned_cols=240  Identities=21%  Similarity=0.307  Sum_probs=175.7

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |...+.||+|+||+||+|+. .+++.||+|++....   ....+.+.+|++++++++|||++++++++.+..        
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   94 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEH--------   94 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCC--------
Confidence            44457799999999999985 468899999986432   233467888999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+. |++.+++....  ..+++..+..++.+++.|++|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        95 ~~~lv~e~~~-~~l~~~l~~~~--~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~  168 (313)
T cd06633          95 TAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSA  168 (313)
T ss_pred             EEEEEEecCC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCC
Confidence            6899999996 57777765432  3488999999999999999999987   8999999999999999999999999998


Q ss_pred             cccccccccccC--CCCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          641 IVSEDINSVGGK--QEDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       641 ~~~~~~~~~~~~--~~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ..........+.  ...|..     ....+.++|||||||++|||++|..|+......  .......... ......+  
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~--~~~~~~~~~~-~~~~~~~--  243 (313)
T cd06633         169 SKSSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQND-SPTLQSN--  243 (313)
T ss_pred             cccCCCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHhcC-CCCCCcc--
Confidence            543222111111  011111     123456789999999999999999997643221  1111111111 1111111  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ...    ..+.+++.+||+.+|.+||++.+++..
T Consensus       244 --~~~----~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         244 --EWT----DSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             --ccC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              111    236788999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=1.2e-29  Score=268.42  Aligned_cols=245  Identities=22%  Similarity=0.271  Sum_probs=178.3

Q ss_pred             CCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      +|++.+.||+|+||.||+++.    .+++.||||.++...    ....+.+.+|++++.++ +||||+++++.+....  
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~--   78 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDT--   78 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCC--
Confidence            467788999999999999874    357889999986532    22345688899999999 5999999998876643  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++....   .+++.....++.|+++||+|||+.   +++||||||+||+++.++.+|+
T Consensus        79 ------~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l  146 (288)
T cd05583          79 ------KLHLILDYVNGGELFTHLYQRE---HFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVL  146 (288)
T ss_pred             ------EEEEEEecCCCCcHHHHHhhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEE
Confidence                  6899999999999999887542   478888899999999999999986   8999999999999999999999


Q ss_pred             ecCCCCccccccccc------c---cCCCCCCccc--CCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHH-hhhhc
Q 004232          635 SDYGLSIVSEDINSV------G---GKQEDPNSWE--MTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEEL-DSLNS  701 (766)
Q Consensus       635 ~DFGla~~~~~~~~~------~---~~~~~~~~~~--~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~-~~~~~  701 (766)
                      +|||++.........      +   ...++.....  ..+.++||||||+++|||+||..|+...... ....+ ..+..
T Consensus       147 ~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~  226 (288)
T cd05583         147 TDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILK  226 (288)
T ss_pred             EECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHc
Confidence            999998653221110      0   0011110111  2456889999999999999999998532211 11111 11111


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      .       ++......    ...+.+++.+||+.+|++|||+.+|...|+..
T Consensus       227 ~-------~~~~~~~~----~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         227 S-------KPPFPKTM----SAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             c-------CCCCCccc----CHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence            0       00000111    12367889999999999999999888777643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.97  E-value=1.6e-29  Score=268.52  Aligned_cols=252  Identities=17%  Similarity=0.249  Sum_probs=175.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|.+.....  ...+.+.+|++++++++||||+++++++.+..       
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   74 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK-------   74 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCC-------
Confidence            46888899999999999999864 689999998864322  23456888999999999999999999988653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFG  638 (766)
                       ..++||||++ +++.+++..... ...++.....++.+|+.||+|||+.   +++||||||+||++++ ++.+||+|||
T Consensus        75 -~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg  148 (294)
T PLN00009         75 -RLYLVFEYLD-LDLKKHMDSSPD-FAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFG  148 (294)
T ss_pred             -eEEEEEeccc-ccHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccc
Confidence             6899999996 578877754332 2356777888999999999999997   8999999999999985 5679999999


Q ss_pred             CCccccccccc-c----cCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-c-Cccc
Q 004232          639 LSIVSEDINSV-G----GKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-E-GRQR  707 (766)
Q Consensus       639 la~~~~~~~~~-~----~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~-~~~~  707 (766)
                      ++......... .    ... ..|..   ....+.++|||||||++|||+||+.|+.....  .+....+... . ....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~  226 (294)
T PLN00009        149 LARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSE--IDELFKIFRILGTPNEE  226 (294)
T ss_pred             cccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCChh
Confidence            98643221110 0    000 01111   12345679999999999999999999864321  1111111000 0 0000


Q ss_pred             c-------cc-----ccccCCC----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 L-------VD-----PVVMATS----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~-------~d-----~~~~~~~----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .       .+     +......    .......+.+++.+|++.+|++||++.++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        227 TWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0       00     0000000    00011236789999999999999999999864

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=2.2e-29  Score=263.48  Aligned_cols=243  Identities=14%  Similarity=0.184  Sum_probs=173.0

Q ss_pred             HHHHHHhcCCCcCCce--ecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          476 EELKEATNNFDMSAIM--GEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~l--G~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .+.....++|++.+.+  |+|+||.||+++. .++..+|+|.+.......   .  |+.....+ +||||+++++++...
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~--e~~~~~~~~~h~~iv~~~~~~~~~   81 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA---I--EPMVHQLMKDNPNFIKLYYSVTTL   81 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch---h--hHHHHHHhhcCCCEEEEEEEEecC
Confidence            4445556677777776  9999999999985 468889999886532211   1  22222212 799999999998875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-  630 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-  630 (766)
                      +        ..++||||+++|+|.+++....   .++|.....++.|+++|++|||+.   +++||||||+||+++.++ 
T Consensus        82 ~--------~~~iv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~  147 (267)
T PHA03390         82 K--------GHVLIMDYIKDGDLFDLLKKEG---KLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKD  147 (267)
T ss_pred             C--------eeEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCC
Confidence            3        6899999999999999997653   589999999999999999999997   899999999999999988 


Q ss_pred             cEEEecCCCCccccccccccc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHHhhhhcccC
Q 004232          631 IAKLSDYGLSIVSEDINSVGG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EELDSLNSQEG  704 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~~~~~~~~~  704 (766)
                      .+||+|||++..........+    ..++.......+.++|||||||++|||++|+.|+........  ..+.... .. 
T Consensus       148 ~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~-  225 (267)
T PHA03390        148 RIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QK-  225 (267)
T ss_pred             eEEEecCccceecCCCccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cc-
Confidence            999999999865433211111    112212223456689999999999999999999864322111  1111110 00 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-HHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS-FEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-~~ev~~  748 (766)
                      .....     .    ..-..+.+++.+|++.+|.+||+ ++|+++
T Consensus       226 ~~~~~-----~----~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        226 KLPFI-----K----NVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             cCCcc-----c----ccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence            00000     0    11233678899999999999995 688864

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-29  Score=267.13  Aligned_cols=248  Identities=21%  Similarity=0.305  Sum_probs=179.0

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |+..+.||+|++|.||+|... +++.+|+|.++....  .....+.+|++++++++||||+++++++.+.+        .
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~--------~   72 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKG--------D   72 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCC--------C
Confidence            456688999999999999864 689999999865432  24567888999999999999999999988653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||+++ ++.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||++++++.+||+|||.+.
T Consensus        73 ~~~v~e~~~~-~l~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~  146 (283)
T cd05118          73 LYLVFEFMDT-DLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLAR  146 (283)
T ss_pred             EEEEEeccCC-CHHHHHHhhc--ccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeE
Confidence            8999999985 8888876543  3588999999999999999999997   89999999999999999999999999986


Q ss_pred             cccccc-cc----cc---CCCCCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc------cCcc
Q 004232          642 VSEDIN-SV----GG---KQEDPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ------EGRQ  706 (766)
Q Consensus       642 ~~~~~~-~~----~~---~~~~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~------~~~~  706 (766)
                      ...... ..    ..   ..++... ....+.++|||||||++|||+||+.|+......  +.+..+...      ....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  224 (283)
T cd05118         147 SFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEI--DQLFKIFRTLGTPDPEVWP  224 (283)
T ss_pred             ecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHcCCCchHhcc
Confidence            543321 00    00   1111111 124567899999999999999999988643321  111111000      0000


Q ss_pred             cc-----------ccccccC--CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          707 RL-----------VDPVVMA--TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       707 ~~-----------~d~~~~~--~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+           .+.....  .........+.+++.+||+.||.+||++.+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         225 KFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             cchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            00           0000000  000112345789999999999999999999975

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=274.97  Aligned_cols=191  Identities=23%  Similarity=0.328  Sum_probs=156.6

Q ss_pred             CCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-C-----CCcccccceeecCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-H-----PHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-H-----pniv~l~g~~~~~~~~~~  556 (766)
                      .|++.++||+|.||.|.||. ..+++.||||+++.... ..++-..|+.+|..++ |     -|+|++++|+...+    
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~----  261 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN----  261 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc----
Confidence            68899999999999999998 45799999999987654 3455677999999997 4     48999999998763    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--CcEEE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH--RIAKL  634 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~--~~~kl  634 (766)
                          +.|||+|.+.. +|+++++.+.. ..++......++.||+.||.+||+.   +|||+||||+||||.+.  ..+||
T Consensus       262 ----HlciVfELL~~-NLYellK~n~f-~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKV  332 (586)
T KOG0667|consen  262 ----HLCIVFELLST-NLYELLKNNKF-RGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKV  332 (586)
T ss_pred             ----ceeeeehhhhh-hHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeE
Confidence                89999999887 99999987653 4588899999999999999999987   89999999999999753  47999


Q ss_pred             ecCCCCccccccc-----ccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          635 SDYGLSIVSEDIN-----SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       635 ~DFGla~~~~~~~-----~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      .|||.|-......     +..++.++..-..++..+.|+||||||+.||+||.+-|...
T Consensus       333 IDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  333 IDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             EecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            9999986543321     12233344444567788999999999999999997767643

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=1.4e-29  Score=266.44  Aligned_cols=239  Identities=18%  Similarity=0.319  Sum_probs=179.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|.+.+.||+|+||.||+|+.. +|+.||+|.+....   ....+.+.+|++++++++ ||||+++++++.+.+     
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~-----   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEE-----   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCc-----
Confidence            36888899999999999999864 79999999986532   233467888999999998 999999999887653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +++|+||||+||+++.++.++++||
T Consensus        76 ---~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df  146 (280)
T cd05581          76 ---NLYFVLEYAPNGELLQYIRKYG---SLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDF  146 (280)
T ss_pred             ---eEEEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCC
Confidence               6899999999999999997653   489999999999999999999987   8999999999999999999999999


Q ss_pred             CCCccccccccc------------------c----------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCc
Q 004232          638 GLSIVSEDINSV------------------G----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKG  689 (766)
Q Consensus       638 Gla~~~~~~~~~------------------~----------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~  689 (766)
                      |++.........                  .          ...++.......+.++||||||++++|+++|+.|+....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (280)
T cd05581         147 GTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN  226 (280)
T ss_pred             ccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            998654322110                  0          000000011234557899999999999999999987443


Q ss_pred             cchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH----HHHHH
Q 004232          690 QFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSF----EDILW  748 (766)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~----~ev~~  748 (766)
                      ..  .....+....  ..+  +   ...    ...+.+++.+||+.+|.+||++    +|+++
T Consensus       227 ~~--~~~~~~~~~~--~~~--~---~~~----~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         227 EY--LTFQKILKLE--YSF--P---PNF----PPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             HH--HHHHHHHhcC--CCC--C---Ccc----CHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            21  1111111100  000  0   011    2337789999999999999999    66653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=2.9e-29  Score=265.86  Aligned_cols=241  Identities=22%  Similarity=0.331  Sum_probs=174.5

Q ss_pred             CCCcCCceecCCceeEEEEEe----cCCceEEEEEccCChh----hhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKK----YTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~----~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      +|++.+.||+|+||.||+++.    .+|..||+|+++....    ...+.+.+|+++++++ +||||+++++++....  
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~--   78 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDT--   78 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCC--
Confidence            467788999999999999985    4689999999875322    2346788899999999 5999999998877642  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++....   .+++.....++.++++||+|||+.   +++||||||+||++++++.+||
T Consensus        79 ------~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl  146 (290)
T cd05613          79 ------KLHLILDYINGGELFTHLSQRE---RFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVL  146 (290)
T ss_pred             ------eEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEE
Confidence                  6899999999999999987543   377888888899999999999987   8999999999999999999999


Q ss_pred             ecCCCCccccccccc------ccCC-CCCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc
Q 004232          635 SDYGLSIVSEDINSV------GGKQ-EDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ  702 (766)
Q Consensus       635 ~DFGla~~~~~~~~~------~~~~-~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~  702 (766)
                      +|||++.........      +... ..|...    ...+.++|||||||++|||+||+.|+...... ....+......
T Consensus       147 ~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~  226 (290)
T cd05613         147 TDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILK  226 (290)
T ss_pred             eeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhc
Confidence            999998654321100      0000 011111    12356789999999999999999998632211 11111111000


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                      .      .+....    .....+.+++.+||+.||++||     +.++++.
T Consensus       227 ~------~~~~~~----~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         227 S------EPPYPQ----EMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             c------CCCCCc----cCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence            0      000000    1113467889999999999997     6666654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2.1e-29  Score=273.72  Aligned_cols=266  Identities=17%  Similarity=0.266  Sum_probs=184.6

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeec
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCID  550 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~  550 (766)
                      ...++...+++|+..+.||+|+||.||+|.. .+++.||+|+++...  ....+.+.+|+.++++++||||+++++++..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3456677889999999999999999999984 578999999986532  2334667889999999999999999998865


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      ....  ......++++|++ +++|.+++...    .+++..+..++.|+++||+|||+.   +|+||||||+||++++++
T Consensus        88 ~~~~--~~~~~~~lv~~~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~  157 (345)
T cd07877          88 ARSL--EEFNDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDC  157 (345)
T ss_pred             cccc--cccccEEEEehhc-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCC
Confidence            3210  0113468888876 77998877542    388999999999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc-ccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcc-
Q 004232          631 IAKLSDYGLSIVSEDINSV-GGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQ-  702 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~-~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~-  702 (766)
                      .+||+|||++......... ....  ..|.   .....+.++|||||||++|||++|+.|+....... .......... 
T Consensus       158 ~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~  237 (345)
T cd07877         158 ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP  237 (345)
T ss_pred             CEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence            9999999998654322110 0000  0111   11234568999999999999999999986332111 1111000000 


Q ss_pred             --cCccccccc----------cccCCCC----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 --EGRQRLVDP----------VVMATSS----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 --~~~~~~~d~----------~~~~~~~----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .....+.+.          .......    ...-..+.+++.+|++.||.+||++.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         238 GAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             CHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence              000000000          0000000    0012346799999999999999999999865

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.96  E-value=4.9e-29  Score=262.54  Aligned_cols=236  Identities=21%  Similarity=0.295  Sum_probs=167.9

Q ss_pred             ceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHH---HHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          490 IMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLR---LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e---~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +||+|+||.||+|+. .+++.||+|++.....   .....+..|   +..++...||||+++++++.+.+        ..
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~   72 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--------KL   72 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCC--------EE
Confidence            489999999999985 4689999998864321   111223333   34455568999999998887653        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++...   ..+++..+..++.|+++|++|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus        73 ~~v~e~~~g~~L~~~l~~~---~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~  146 (278)
T cd05606          73 SFILDLMNGGDLHYHLSQH---GVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD  146 (278)
T ss_pred             EEEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccc
Confidence            9999999999999988654   2489999999999999999999997   899999999999999999999999999864


Q ss_pred             cccccc---cccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          643 SEDINS---VGGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       643 ~~~~~~---~~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ......   .+... ..|..   ...++.++|||||||++|||++|+.|+.................      .++....
T Consensus       147 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~------~~~~~~~  220 (278)
T cd05606         147 FSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT------MAVELPD  220 (278)
T ss_pred             cCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhc------cCCCCCC
Confidence            322111   11100 01111   12356789999999999999999999864322111111111100      1111111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                      ..    ...+.+++.+|+..+|.+||     ++.++++.
T Consensus       221 ~~----s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         221 SF----SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             cC----CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence            11    13477889999999999999     89888753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.96  E-value=2e-29  Score=262.49  Aligned_cols=241  Identities=17%  Similarity=0.271  Sum_probs=173.2

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-----hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-----KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-----~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .|.+.+.||+|+||.||+++.. .+..+++|.++..     ......++.+|+.++++++||||+++++++.+..     
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD-----   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC-----
Confidence            3677889999999999999854 3445666655432     1223445778899999999999999999987653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..++||||+++++|..++.+. .....+++..+..++.+++.|+.|||+.   +++|+||||+||++++ +.+|++|
T Consensus        76 ---~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d  148 (260)
T cd08222          76 ---AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGD  148 (260)
T ss_pred             ---ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecc
Confidence               579999999999999888642 2234589999999999999999999987   8999999999999985 5699999


Q ss_pred             CCCCcccccccccc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~~--------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||++..........        ...++......++.++||||||+++|||++|..|+.....  ......... ...   
T Consensus       149 ~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~--~~~~~~~~~-~~~---  222 (260)
T cd08222         149 FGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF--LSVVLRIVE-GPT---  222 (260)
T ss_pred             cCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHc-CCC---
Confidence            99986543211110        0011111113345679999999999999999999863221  111111111 111   


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        +..    .......+.+++.+||..+|++||++.||++
T Consensus       223 --~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         223 --PSL----PETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             --CCC----cchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence              111    1112234778999999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=1.5e-29  Score=268.64  Aligned_cols=252  Identities=12%  Similarity=0.140  Sum_probs=162.6

Q ss_pred             cCCCcCCceecCCceeEEEEEecC----CceEEEEEccCChhhh-----------HHHHHHHHHHHHhCCCCCcccccce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKKYT-----------VRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~-----------~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      +.|++.++||+|+||+||+|+..+    +..+|+|.........           ......+...+..++|+|+++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            568889999999999999998654    3456666543221110           0112223345667799999999987


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      +......    ....++++|++.. ++.+.+....   ..++.....++.|+++||+|||+.   +|+||||||+|||++
T Consensus        92 ~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~  160 (294)
T PHA02882         92 GSFKRCR----MYYRFILLEKLVE-NTKEIFKRIK---CKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVD  160 (294)
T ss_pred             eeEecCC----ceEEEEEEehhcc-CHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEc
Confidence            6654211    1235778887654 5555554321   246777889999999999999997   899999999999999


Q ss_pred             CCCcEEEecCCCCcccccccc-----------cccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch
Q 004232          628 EHRIAKLSDYGLSIVSEDINS-----------VGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL  692 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~  692 (766)
                      .++.+||+|||+|+.......           ..++.    ++......++.++|||||||++|||++|+.||.......
T Consensus       161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~  240 (294)
T PHA02882        161 GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG  240 (294)
T ss_pred             CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch
Confidence            999999999999865421110           00000    011112335668899999999999999999996442211


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      . ..... ..+...++..+......   ....+.+++..||..+|++||++.++.+.+
T Consensus       241 ~-~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        241 N-LIHAA-KCDFIKRLHEGKIKIKN---ANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             H-HHHHh-HHHHHHHhhhhhhccCC---CCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            1 00000 00000111111100011   123477899999999999999999998865

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=2.4e-29  Score=264.99  Aligned_cols=250  Identities=19%  Similarity=0.265  Sum_probs=178.1

Q ss_pred             CCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |+..+.||+|+||.||+|+.. +++.||+|.+....  ....+.+..|+.++++++|||++++++++.+.+        .
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~--------~   72 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTER--------K   72 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCC--------c
Confidence            455678999999999999965 59999999987643  233467788999999999999999999988753        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|+||++ ++|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||+|+||++++++.+||+|||++.
T Consensus        73 ~~~v~e~~~-~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~  146 (282)
T cd07829          73 LYLVFEYCD-MDLKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLAR  146 (282)
T ss_pred             eEEEecCcC-cCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCccc
Confidence            899999998 58999997642  2488999999999999999999997   89999999999999999999999999986


Q ss_pred             ccccccccc--------cCCCCCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccC------c
Q 004232          642 VSEDINSVG--------GKQEDPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEG------R  705 (766)
Q Consensus       642 ~~~~~~~~~--------~~~~~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~------~  705 (766)
                      .........        ...++... ....+.++|||||||++||+++|+.|+...... ....+........      .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (282)
T cd07829         147 AFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGV  226 (282)
T ss_pred             ccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhh
Confidence            543221100        01111111 114566899999999999999999888643211 0000000000000      0


Q ss_pred             ccc--cc---ccccCCCCH----HHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRL--VD---PVVMATSSL----ESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~--~d---~~~~~~~~~----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+  .+   +........    .....+.+++.+||+.+|++||++.+|+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         227 TKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             cccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            000  00   000000000    01235789999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=2.7e-29  Score=272.60  Aligned_cols=257  Identities=16%  Similarity=0.259  Sum_probs=178.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC-----
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD-----  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~-----  556 (766)
                      .+|+..+.||+|+||.||+|+. .+|..||+|++........+.+.+|++++++++||||+++++++...+....     
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5688889999999999999985 4689999999876655566778899999999999999999988765431100     


Q ss_pred             -cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEE
Q 004232          557 -YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKL  634 (766)
Q Consensus       557 -~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl  634 (766)
                       ......++||||++ ++|.+++...    .+++.....++.|+++||+|||+.   +|+||||||+||+++ +++.+|+
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl  156 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQG----PLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKI  156 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEE
Confidence             00125799999998 5898877532    378899999999999999999987   899999999999998 4567999


Q ss_pred             ecCCCCccccccccc--------ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          635 SDYGLSIVSEDINSV--------GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       635 ~DFGla~~~~~~~~~--------~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      +|||++.........        +... ..|.   .....+.++|||||||++|||++|+.||......  .........
T Consensus       157 ~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~--~~~~~~~~~  234 (342)
T cd07854         157 GDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHEL--EQMQLILES  234 (342)
T ss_pred             CCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHh
Confidence            999998654321110        0000 0111   1123456799999999999999999998643211  111100000


Q ss_pred             c------Cccc--------cccccccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 E------GRQR--------LVDPVVMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ~------~~~~--------~~d~~~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .      ...+        ..........+.     .....+.+++.+|++.||.+||++.||+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         235 VPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             cCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            0      0000        000000000000     011346789999999999999999999854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=3.2e-29  Score=256.52  Aligned_cols=237  Identities=22%  Similarity=0.313  Sum_probs=173.9

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhh---hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKY---TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|++.+.||.|.-|+||.++.. ++...|+|++.+....   ...+.+.|.+||+.++||.+..||+.+..+       
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~-------  149 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETD-------  149 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeecc-------
Confidence            34566789999999999999976 4689999999765432   345667788999999999999999999876       


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       +..|+|||||+||+|....+++ +++.++......+|.+|..||+|||-.   |||+|||||+||||-++|++-++||-
T Consensus       150 -~~~cl~meyCpGGdL~~LrqkQ-p~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFD  224 (459)
T KOG0610|consen  150 -KYSCLVMEYCPGGDLHSLRQKQ-PGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFD  224 (459)
T ss_pred             -ceeEEEEecCCCccHHHHHhhC-CCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeecc
Confidence             3789999999999999877755 456788888889999999999999987   99999999999999999999999999


Q ss_pred             CCcccccccc--------------------c---------ccCC-C---------------CCC----------------
Q 004232          639 LSIVSEDINS--------------------V---------GGKQ-E---------------DPN----------------  657 (766)
Q Consensus       639 la~~~~~~~~--------------------~---------~~~~-~---------------~~~----------------  657 (766)
                      |+........                    .         ..+. .               ++.                
T Consensus       225 LS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAP  304 (459)
T KOG0610|consen  225 LSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAP  304 (459)
T ss_pred             ccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccc
Confidence            8743210000                    0         0000 0               000                


Q ss_pred             ---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhcc
Q 004232          658 ---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCIC  734 (766)
Q Consensus       658 ---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~  734 (766)
                         .....+.++|||+|||++|||+.|..||...+.  .+.+..+..++  .++.+.       .+-...+.+|+.+-+.
T Consensus       305 EvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~--~~Tl~NIv~~~--l~Fp~~-------~~vs~~akDLIr~LLv  373 (459)
T KOG0610|consen  305 EVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNN--KETLRNIVGQP--LKFPEE-------PEVSSAAKDLIRKLLV  373 (459)
T ss_pred             eeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCc--hhhHHHHhcCC--CcCCCC-------CcchhHHHHHHHHHhc
Confidence               001112256999999999999999999964332  22222222211  111111       1223447899999999


Q ss_pred             CCCCCCCC
Q 004232          735 SESWSRPS  742 (766)
Q Consensus       735 ~~p~~RPs  742 (766)
                      +||++|--
T Consensus       374 KdP~kRlg  381 (459)
T KOG0610|consen  374 KDPSKRLG  381 (459)
T ss_pred             cChhhhhc
Confidence            99999965

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=6.5e-29  Score=269.70  Aligned_cols=257  Identities=18%  Similarity=0.308  Sum_probs=179.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|++.+.||+|+||.||+|.. .+|..||||++....  ....+.+.+|++++++++||||+++++++.......  
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--   90 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD--   90 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc--
Confidence            456799999999999999999984 478999999985432  223456889999999999999999999887543111  


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++||||+ +++|..++..    ..+++.....++.|+++||+|||+.   +|+||||||+||+++.++.+|++||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~----~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~df  162 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKH----EKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDF  162 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeec
Confidence            113569999999 6789887753    2478999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-ccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc-c--------
Q 004232          638 GLSIVSEDINSV-GGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS-Q--------  702 (766)
Q Consensus       638 Gla~~~~~~~~~-~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~-~--------  702 (766)
                      |++......... ....  ..|.   .....+.++|||||||++||+++|+.|+......  .....+.. .        
T Consensus       163 g~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~  240 (343)
T cd07880         163 GLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHL--DQLMEIMKVTGTPSKEFV  240 (343)
T ss_pred             ccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHhcCCCCHHHH
Confidence            998654322111 0000  0111   1123556789999999999999999998643211  11111000 0        


Q ss_pred             -----cCcccccc--ccccCC----CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 -----EGRQRLVD--PVVMAT----SSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 -----~~~~~~~d--~~~~~~----~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ........  +.....    ........+.+++.+|++.||++|||+.+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         241 QKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             HhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                 00000000  000000    000111236789999999999999999999844

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.96  E-value=3.1e-29  Score=271.44  Aligned_cols=248  Identities=18%  Similarity=0.239  Sum_probs=172.7

Q ss_pred             cCCceecCCceeEEEEEe-cCCceEEEEEccCChhhh--------------HHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          487 MSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYT--------------VRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~--------------~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      +.+.||+|+||+||+|+. .+++.||||++.......              ...+.+|++++++++||||+++++++...
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            357799999999999985 468999999886432211              12477899999999999999999998765


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      +        ..++||||++ |+|.+++...   ..+++.....++.|++.||+|||+.   +++||||||+||+++.++.
T Consensus        93 ~--------~~~lv~e~~~-~~l~~~l~~~---~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~  157 (335)
T PTZ00024         93 D--------FINLVMDIMA-SDLKKVVDRK---IRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGI  157 (335)
T ss_pred             C--------cEEEEEeccc-cCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCC
Confidence            3        6899999997 6899888643   2378889999999999999999987   8999999999999999999


Q ss_pred             EEEecCCCCccccccc--------------cc-c-------cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          632 AKLSDYGLSIVSEDIN--------------SV-G-------GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~--------------~~-~-------~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      +|++|||++.......              .. .       ...++.. .....+.++|||||||++|||+||+.|+...
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  237 (335)
T PTZ00024        158 CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE  237 (335)
T ss_pred             EEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999986543100              00 0       0001100 0112356789999999999999999998643


Q ss_pred             ccch-HHHHhhhhcccCccccc-----------cccccCCC---CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          689 GQFL-QEELDSLNSQEGRQRLV-----------DPVVMATS---SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       689 ~~~~-~~~~~~~~~~~~~~~~~-----------d~~~~~~~---~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .... ...+...........+.           .+......   .......+.+++.+|++.+|++||+++||+..
T Consensus       238 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        238 NEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             CHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            3211 11111111000000000           00000000   00112347789999999999999999999864

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.7e-29  Score=263.59  Aligned_cols=242  Identities=18%  Similarity=0.304  Sum_probs=176.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEcc--CChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~--~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..|++.+.||+||...||++...+...+|+|++.  ..+.+...-|..|+..|.+++ |.+||+|++|=..++       
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~-------  433 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDG-------  433 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCc-------
Confidence            3577889999999999999998888888988774  345566788999999999995 999999999866543       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .+||||||-.- ||.++|++... ...+| .+..+..|+..++.++|++   +|||.||||.|.|+- +|.+||.|||+
T Consensus       434 -~lYmvmE~Gd~-DL~kiL~k~~~-~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGI  505 (677)
T KOG0596|consen  434 -YLYMVMECGDI-DLNKILKKKKS-IDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGI  505 (677)
T ss_pred             -eEEEEeecccc-cHHHHHHhccC-CCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeech
Confidence             79999998665 89999987643 33456 6678899999999999998   999999999999985 57999999999


Q ss_pred             Cccccccccc------ccCC--CCCCcc-------------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          640 SIVSEDINSV------GGKQ--EDPNSW-------------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       640 a~~~~~~~~~------~~~~--~~~~~~-------------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      |.......+.      .++.  ..|.+.             -....++||||+|||||+|+.|+.||..    ....+..
T Consensus       506 A~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~----~~n~~aK  581 (677)
T KOG0596|consen  506 ANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQ----IINQIAK  581 (677)
T ss_pred             hcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHH----HHHHHHH
Confidence            9654322111      0110  011100             0123478999999999999999999852    1111222


Q ss_pred             hhc-ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          699 LNS-QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       699 ~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +.. .+.-.++.-|.+.   ...   .++++++.|++.||.+||+..|+++.
T Consensus       582 l~aI~~P~~~Iefp~~~---~~~---~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  582 LHAITDPNHEIEFPDIP---END---ELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             HHhhcCCCccccccCCC---Cch---HHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            111 1111222222221   111   17899999999999999999999864

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-30  Score=297.14  Aligned_cols=240  Identities=18%  Similarity=0.297  Sum_probs=175.7

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      -++.-...||.|.||.||-|. .++|+..|+|.++-.  .......+.+|+.++..++|||+|+++|+=.+.+       
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe------- 1307 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE------- 1307 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHH-------
Confidence            345567789999999999997 678999999988643  3344567889999999999999999999876653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..+|.||||++|+|.+.+...+   ..+......+..|++.|++|||++   +||||||||+||+||.+|.+|.+|||.
T Consensus      1308 -kv~IFMEyC~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGs 1380 (1509)
T KOG4645|consen 1308 -KVYIFMEYCEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGS 1380 (1509)
T ss_pred             -HHHHHHHHhccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccc
Confidence             6899999999999999886532   355666667888999999999998   999999999999999999999999999


Q ss_pred             Cccccccc-ccc----cCCCCCCcccC----------CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          640 SIVSEDIN-SVG----GKQEDPNSWEM----------TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       640 a~~~~~~~-~~~----~~~~~~~~~~~----------~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      |....... ...    ...++|.+..+          ..-++||||+|||+.||+||++|+..-+..+.-.+  .+..+.
T Consensus      1381 a~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy--~V~~gh 1458 (1509)
T KOG4645|consen 1381 AVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMY--HVAAGH 1458 (1509)
T ss_pred             eeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHh--HHhccC
Confidence            96543321 110    11112222111          11246999999999999999999974332221111  111122


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL  747 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~  747 (766)
                      ..+++..         --.+-.+++.+|++.||++|.++.|++
T Consensus      1459 ~Pq~P~~---------ls~~g~dFle~Cl~~dP~~Rw~~~qll 1492 (1509)
T KOG4645|consen 1459 KPQIPER---------LSSEGRDFLEHCLEQDPKMRWTASQLL 1492 (1509)
T ss_pred             CCCCchh---------hhHhHHHHHHHHHhcCchhhhHHHHHH
Confidence            2222211         223356889999999999998777554

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5.2e-29  Score=282.94  Aligned_cols=257  Identities=16%  Similarity=0.176  Sum_probs=165.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecC--CceEEEEEcc-----------------CChhhhHHHHHHHHHHHHhCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLP-----------------SSKKYTVRNLKLRLDLLAKLRHPHL  541 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~-----------------~~~~~~~~~~~~e~~~l~~l~Hpni  541 (766)
                      ..++|++.+.||+|+||+||++..+.  +..+++|.+.                 .......+.+++|+.+|++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            45789999999999999999987532  2222222110                 0111234568899999999999999


Q ss_pred             ccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC--CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP--GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       542 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                      |++++++.+.+        ..++|+|++.. ++..++.....  ...........++.|++.||+|||+.   +|+||||
T Consensus       226 v~l~~~~~~~~--------~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDL  293 (501)
T PHA03210        226 LKIEEILRSEA--------NTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDI  293 (501)
T ss_pred             CcEeEEEEECC--------eeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCC
Confidence            99999998764        67999999864 67666643211  11123455668999999999999997   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCcccccccc------ccc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCc-cccCc
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINS------VGG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSV-AARKG  689 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~------~~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p-~~~~~  689 (766)
                      ||+|||++.++.+||+|||+++.......      .+.   ..++......++.++|||||||++|||++|..+ +....
T Consensus       294 KP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~  373 (501)
T PHA03210        294 KLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGG  373 (501)
T ss_pred             CHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCC
Confidence            99999999999999999999975432211      011   111111223456688999999999999998754 33222


Q ss_pred             cchHHHHhhhhcc-c-Cccccccc-----------cccCC--CCHH------HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          690 QFLQEELDSLNSQ-E-GRQRLVDP-----------VVMAT--SSLE------SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       690 ~~~~~~~~~~~~~-~-~~~~~~d~-----------~~~~~--~~~~------~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......+..+... . ...++.++           .....  ....      ....+.+++.+|++.||.+|||+.|++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        374 GKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             CCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            1111111111000 0 00011110           00000  0000      0123567788999999999999999986


Q ss_pred             H
Q 004232          749 N  749 (766)
Q Consensus       749 ~  749 (766)
                      .
T Consensus       454 h  454 (501)
T PHA03210        454 L  454 (501)
T ss_pred             C
Confidence            4

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4.9e-29  Score=270.76  Aligned_cols=257  Identities=18%  Similarity=0.309  Sum_probs=180.5

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|+..+.||+|+||.||+|+.. ++..||||++...  .....+.+.+|+.++++++||||+++++++...+..  .
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~--~   90 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSL--E   90 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccc--c
Confidence            3567888999999999999999864 6889999998643  223346677899999999999999999977654310  0


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++|+||+ +++|.+++..    ..+++.....++.++++|++|||+.   +|+||||||+||++++++.+||+||
T Consensus        91 ~~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~df  162 (343)
T cd07851          91 DFQDVYLVTHLM-GADLNNIVKC----QKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDF  162 (343)
T ss_pred             ccccEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEccc
Confidence            112489999998 5699888864    2488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc-cCCC--CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-c-Cc----
Q 004232          638 GLSIVSEDINSVG-GKQE--DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-E-GR----  705 (766)
Q Consensus       638 Gla~~~~~~~~~~-~~~~--~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~-~~----  705 (766)
                      |++.......... ....  .|.   .....+.++|||||||++||++||+.|+.....  ...+..+... + ..    
T Consensus       163 g~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~--~~~~~~i~~~~~~~~~~~~  240 (343)
T cd07851         163 GLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDH--IDQLKRIMNLVGTPDEELL  240 (343)
T ss_pred             cccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHHhcCCCCHHHH
Confidence            9986543221110 0100  111   112456789999999999999999999864322  1111111000 0 00    


Q ss_pred             --------ccccccc-ccCCCC-----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 --------QRLVDPV-VMATSS-----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 --------~~~~d~~-~~~~~~-----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                              ..+.... ......     ......+.+++.+|++.+|++|||+.||++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         241 QKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             hhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence                    0000000 000000     0012357899999999999999999999764

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=2e-28  Score=253.23  Aligned_cols=228  Identities=21%  Similarity=0.267  Sum_probs=171.7

Q ss_pred             eecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          491 MGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      ||+|+||.||++... +++.+|+|.+.....   .....+..|++++++++||||+++++.+....        ..++||
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~~~v~   72 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEE--------KLYLVL   72 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCC--------eeEEEE
Confidence            699999999999865 589999999865432   24567889999999999999999999887653        689999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI  646 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~  646 (766)
                      ||+++++|.+++....   .+++.....++.+++.|+.|+|+.   +++|+||||+||+++.++.+||+|||++......
T Consensus        73 e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~  146 (250)
T cd05123          73 EYAPGGELFSHLSKEG---RFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSE  146 (250)
T ss_pred             ecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccC
Confidence            9999999999987543   478999999999999999999996   8999999999999999999999999998654322


Q ss_pred             c-cc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCC
Q 004232          647 N-SV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS  718 (766)
Q Consensus       647 ~-~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  718 (766)
                      . ..       ....++.......+.++||||||+++||+++|+.|+.....  ......+.. .   ...-+   ... 
T Consensus       147 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~~~~~~~~~-~---~~~~~---~~~-  216 (250)
T cd05123         147 GSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR--KEIYEKILK-D---PLRFP---EFL-  216 (250)
T ss_pred             CCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHhc-C---CCCCC---CCC-
Confidence            1 00       01111111112345679999999999999999999864332  111222211 0   00001   111 


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHH
Q 004232          719 LESLSIVISIANKCICSESWSRPSFED  745 (766)
Q Consensus       719 ~~~~~~~~~l~~~C~~~~p~~RPs~~e  745 (766)
                         ...+.+++.+||..||++||++.+
T Consensus       217 ---~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         217 ---SPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             ---CHHHHHHHHHHhcCCHhhCCCccc
Confidence               123678999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=1.5e-28  Score=265.66  Aligned_cols=254  Identities=20%  Similarity=0.302  Sum_probs=174.3

Q ss_pred             CCCcCCceecCCceeEEEEEec-C--CceEEEEEccCC--hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-N--GTSVAIRCLPSS--KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~--g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +|++.+.||+|+||.||+++.. .  +..||||++...  .....+.+.+|+++++++ +||||+++++++.....    
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~----   76 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPG----   76 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccc----
Confidence            3677889999999999999864 3  788999998643  222356678899999999 59999999987654311    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      .....++++||+. ++|.+++...   ..+++.....++.|++.||+|||+.   +++||||||+||++++++.+||+||
T Consensus        77 ~~~~~~~~~e~~~-~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Df  149 (332)
T cd07857          77 NFNELYLYEELME-ADLHQIIRSG---QPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDF  149 (332)
T ss_pred             cCCcEEEEEeccc-CCHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcC
Confidence            1135789999987 5898888643   3488999999999999999999987   8999999999999999999999999


Q ss_pred             CCCcccccccc---------cccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HH---------
Q 004232          638 GLSIVSEDINS---------VGGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QE---------  694 (766)
Q Consensus       638 Gla~~~~~~~~---------~~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~---------  694 (766)
                      |+++.......         .+... ..|..   ....+.++|||||||++|||++|+.|+....... ..         
T Consensus       150 g~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  229 (332)
T cd07857         150 GLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTP  229 (332)
T ss_pred             CCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCC
Confidence            99865432110         00000 01111   1234567899999999999999999886432110 00         


Q ss_pred             ---HHhhhhcccC------ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          695 ---ELDSLNSQEG------RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       695 ---~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         .+..+.....      ............ .......+.+++.+|++.||.+||++.|++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         230 DEETLSRIGSPKAQNYIRSLPNIPKKPFESI-FPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             CHHHHHhhhhhhHHHHHHhccccCCcchHhh-CCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence               0000000000      000000000000 00012347789999999999999999998754

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=243.92  Aligned_cols=242  Identities=23%  Similarity=0.329  Sum_probs=170.8

Q ss_pred             CcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcceE
Q 004232          486 DMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +....||.|.-|.|++++++ +|..+|||.+... .++..+++.+.++++.+-+ .|.||+.+|||....        .+
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~--------dV  166 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT--------DV  166 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc--------hH
Confidence            34567999999999999965 6899999999754 4555677888888776654 899999999998753        46


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++.||.|.- -+..+++.-.  .+++....-++...+.+||.||-+.+  +|+|||+||+|||+|+.|++|+||||++..
T Consensus       167 ~IcMelMs~-C~ekLlkrik--~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGr  241 (391)
T KOG0983|consen  167 FICMELMST-CAEKLLKRIK--GPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGR  241 (391)
T ss_pred             HHHHHHHHH-HHHHHHHHhc--CCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccce
Confidence            788888764 3444444322  23555555678888999999999875  899999999999999999999999999955


Q ss_pred             ccccc----ccccCC-CCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDIN----SVGGKQ-EDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~----~~~~~~-~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ..+..    +.++.. ..|.     ....+...+|||||||.++|++||+.||...... .+.+..+...+  ...+++.
T Consensus       242 lvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td-Fe~ltkvln~e--PP~L~~~  318 (391)
T KOG0983|consen  242 LVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD-FEVLTKVLNEE--PPLLPGH  318 (391)
T ss_pred             eecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc-HHHHHHHHhcC--CCCCCcc
Confidence            43221    111111 1111     1233456789999999999999999999743222 22233333221  1112211


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                            ........++...|+..|+.+||...++++.
T Consensus       319 ------~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  319 ------MGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             ------cCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence                  1123347788999999999999999888754

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=4.3e-29  Score=284.33  Aligned_cols=254  Identities=19%  Similarity=0.319  Sum_probs=175.5

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCC---
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG---  553 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~---  553 (766)
                      .+...+|+..+.||+||||.|||++-+ ||..+|||++.-. .......+.+|+.++++++|||||+++..+.+...   
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            466788999999999999999999844 8999999999754 33445678899999999999999999876532110   


Q ss_pred             --------------------------------------------------------------------------------
Q 004232          554 --------------------------------------------------------------------------------  553 (766)
Q Consensus       554 --------------------------------------------------------------------------------  553 (766)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -------------------CCCcCc---------ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004232          554 -------------------RDDYAV---------NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF  605 (766)
Q Consensus       554 -------------------~~~~~~---------~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~y  605 (766)
                                         .++...         ..+|+-||||+.-.++++++.+....  .-...++++.+|++||+|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~--~~d~~wrLFreIlEGLaY  712 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS--QRDEAWRLFREILEGLAY  712 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch--hhHHHHHHHHHHHHHHHH
Confidence                               000000         24789999999999998887654221  345567899999999999


Q ss_pred             HhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc----c--------c-----cc------cccC----CCCCCc
Q 004232          606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----D--------I-----NS------VGGK----QEDPNS  658 (766)
Q Consensus       606 LH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~----~--------~-----~~------~~~~----~~~~~~  658 (766)
                      +|+.   +||||||||.||++|++..+||+|||+|....    .        .     ..      .++.    ++....
T Consensus       713 IH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~  789 (1351)
T KOG1035|consen  713 IHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSD  789 (1351)
T ss_pred             HHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcc
Confidence            9998   89999999999999999999999999996511    0        0     00      0000    010111


Q ss_pred             cc--CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCC
Q 004232          659 WE--MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSE  736 (766)
Q Consensus       659 ~~--~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~  736 (766)
                      +.  .++.|+|+||+|||++||+.   ||... +.=...+..+. .+   .+..+.   .........-.+++.+.++.|
T Consensus       790 ~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts-MERa~iL~~LR-~g---~iP~~~---~f~~~~~~~e~slI~~Ll~hd  858 (1351)
T KOG1035|consen  790 TSSNKYNSKIDMYSLGIVLFEMLY---PFGTS-MERASILTNLR-KG---SIPEPA---DFFDPEHPEEASLIRWLLSHD  858 (1351)
T ss_pred             cccccccchhhhHHHHHHHHHHhc---cCCch-HHHHHHHHhcc-cC---CCCCCc---ccccccchHHHHHHHHHhcCC
Confidence            22  57789999999999999996   45421 11111122221 11   111110   001111222357888999999


Q ss_pred             CCCCCCHHHHHH
Q 004232          737 SWSRPSFEDILW  748 (766)
Q Consensus       737 p~~RPs~~ev~~  748 (766)
                      |.+|||+.|++.
T Consensus       859 P~kRPtA~eLL~  870 (1351)
T KOG1035|consen  859 PSKRPTATELLN  870 (1351)
T ss_pred             CccCCCHHHHhh
Confidence            999999999875

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-30  Score=250.79  Aligned_cols=243  Identities=19%  Similarity=0.301  Sum_probs=170.2

Q ss_pred             CCceecCCceeEEEEEe-cCCceEEEEEccCChh-hhHHHHHHHHHH-HHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK-YTVRNLKLRLDL-LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~e~~~-l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ...||.|+||+|+|-.. +.|+..|||++..... .+.+++..|.+. |+.-+.||||+++|++..++        ..|+
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EG--------dcWi  140 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEG--------DCWI  140 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCC--------ceee
Confidence            46799999999999875 5799999999976533 456778888775 55568999999999998765        5799


Q ss_pred             EEEccCCCChhhh---hhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          565 VYEFMSNGNFRTH---ISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       565 v~Ey~~~GsL~~~---l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .||.|.- +++.+   +.... ...++....-.|......||.||-...  .|||||+||+|||+|..|.+|+||||++.
T Consensus       141 CMELMd~-SlDklYk~vy~vq-~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcG  216 (361)
T KOG1006|consen  141 CMELMDI-SLDKLYKRVYSVQ-KSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICG  216 (361)
T ss_pred             eHHHHhh-hHHHHHHHHHHHH-hccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchH
Confidence            9999974 55433   22211 123566666677778889999998763  79999999999999999999999999985


Q ss_pred             ccccc----cccccCCC-CCCc----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          642 VSEDI----NSVGGKQE-DPNS----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       642 ~~~~~----~~~~~~~~-~~~~----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ...+.    ...++.+. .|..    ...+..++||||+|++|||+.||+.|+..... ..+.+..+..       -||.
T Consensus       217 qLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s-vfeql~~Vv~-------gdpp  288 (361)
T KOG1006|consen  217 QLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS-VFEQLCQVVI-------GDPP  288 (361)
T ss_pred             hHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH-HHHHHHHHHc-------CCCC
Confidence            43221    11222221 1111    12366789999999999999999999864322 1121222221       1222


Q ss_pred             ccCCCC--HHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          713 VMATSS--LESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       713 ~~~~~~--~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      +.....  .+-...+.+++..|+-+|-++||+..++.+.=
T Consensus       289 ~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~  328 (361)
T KOG1006|consen  289 ILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKFP  328 (361)
T ss_pred             eecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcCc
Confidence            211111  11223478889999999999999999987763

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.6e-29  Score=258.73  Aligned_cols=238  Identities=20%  Similarity=0.295  Sum_probs=176.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+.|..-++||+||||.||-++.. +|+.+|.|++.+..   +........|-.+|.+++.|.||.+--++...      
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTk------  257 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETK------  257 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCC------
Confidence            467888999999999999999854 79999999886532   22334566788999999999999987666654      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        +.+++|+..|.||||..||.+.+. ..++..+.+.+|.+|+.||++||..   .||.||+||+|||||++|+++|+|.
T Consensus       258 --d~LClVLtlMNGGDLkfHiyn~g~-~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDL  331 (591)
T KOG0986|consen  258 --DALCLVLTLMNGGDLKFHIYNHGN-PGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDL  331 (591)
T ss_pred             --CceEEEEEeecCCceeEEeeccCC-CCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeecc
Confidence              379999999999999999987653 4588888999999999999999998   8999999999999999999999999


Q ss_pred             CCCccccccccccc-------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGG-------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~-------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  709 (766)
                      |+|....+.....+       ..++....+.++...|+||+||++|||+.|..||...... ..++++.....+ ..++ 
T Consensus       332 GLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~-~~ey-  409 (591)
T KOG0986|consen  332 GLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLED-PEEY-  409 (591)
T ss_pred             ceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcc-hhhc-
Confidence            99965544322221       1122222345777899999999999999999999743221 122233322211 1111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                              ++....++.+|...-++.||.+|-
T Consensus       410 --------~~kFS~eakslc~~LL~Kdp~~RL  433 (591)
T KOG0986|consen  410 --------SDKFSEEAKSLCEGLLTKDPEKRL  433 (591)
T ss_pred             --------ccccCHHHHHHHHHHHccCHHHhc
Confidence                    111122345666677888888884

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.96  E-value=4.6e-28  Score=269.72  Aligned_cols=256  Identities=15%  Similarity=0.198  Sum_probs=166.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-----------------cCCceEEEEEccCChhhhHHH--------------HHHH
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-----------------ENGTSVAIRCLPSSKKYTVRN--------------LKLR  529 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-----------------~~g~~vAvK~l~~~~~~~~~~--------------~~~e  529 (766)
                      ..++|++.++||+|+||+||+|..                 ..++.||||++........++              ...|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999963                 235689999987543322223              3346


Q ss_pred             HHHHHhCCCCCc-----ccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC---------------------
Q 004232          530 LDLLAKLRHPHL-----VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------  583 (766)
Q Consensus       530 ~~~l~~l~Hpni-----v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------  583 (766)
                      +.++.+++|.++     ++++|||..............+|||||+++|+|.++++....                     
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            677778877654     778888875321111222468999999999999998864210                     


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccccc----cc-----cCCC
Q 004232          584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS----VG-----GKQE  654 (766)
Q Consensus       584 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~----~~-----~~~~  654 (766)
                      ...++|..+..++.+++.||+|+|+.   +|+||||||+||+++.++.+||+|||++........    .+     +..+
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP  379 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP  379 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence            12356788889999999999999987   899999999999999999999999999854321110    00     0001


Q ss_pred             CCCcc---------------------c-CCCCCCCEeehhHHHHHHhcCCC-ccccCccchH---------HHHhhhhcc
Q 004232          655 DPNSW---------------------E-MTKLEDDVFSFGFMLLESVAGPS-VAARKGQFLQ---------EELDSLNSQ  702 (766)
Q Consensus       655 ~~~~~---------------------~-~~~~~~DV~SfGvil~ElltG~~-p~~~~~~~~~---------~~~~~~~~~  702 (766)
                      +....                     . ....+.||||+||+++||++|.. |+.....+..         ..|......
T Consensus       380 E~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~  459 (507)
T PLN03224        380 EELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQ  459 (507)
T ss_pred             hhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhccc
Confidence            10000                     0 01124699999999999999864 5532111100         001111000


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCC---CCCCCHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSES---WSRPSFEDILW  748 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p---~~RPs~~ev~~  748 (766)
                        ...+   ......    -....+++.+++..+|   .+|+|++|+++
T Consensus       460 --~~~~---~~~d~~----s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        460 --KYDF---SLLDRN----KEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             --CCCc---cccccc----ChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence              0010   001111    1236788889998766   68999999875

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.95  E-value=7.7e-28  Score=281.77  Aligned_cols=145  Identities=26%  Similarity=0.454  Sum_probs=127.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|.+.+.||+|+||.||+|+.. +++.||||+++...   ....+.+.+|+.+++.++||||+++++++....      
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~------   77 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSAN------   77 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECC------
Confidence            57888999999999999999965 68999999986542   233567889999999999999999998887653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|+||||+++|+|.+++....   .+++.....++.+|+.||+|||..   +|+||||||+|||++.++.+||+|||
T Consensus        78 --~~~lVmEy~~g~~L~~li~~~~---~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFG  149 (669)
T cd05610          78 --NVYLVMEYLIGGDVKSLLHIYG---YFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFG  149 (669)
T ss_pred             --EEEEEEeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCC
Confidence              7899999999999999987543   378888899999999999999997   89999999999999999999999999


Q ss_pred             CCc
Q 004232          639 LSI  641 (766)
Q Consensus       639 la~  641 (766)
                      +++
T Consensus       150 ls~  152 (669)
T cd05610         150 LSK  152 (669)
T ss_pred             CCc
Confidence            975

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=7.6e-28  Score=247.18  Aligned_cols=217  Identities=18%  Similarity=0.142  Sum_probs=158.7

Q ss_pred             CCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCC
Q 004232          494 GSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG  572 (766)
Q Consensus       494 G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~G  572 (766)
                      |.||.||+++. .+++.+|+|++....     .+.+|...+....||||+++++++.+.+        ..++||||+++|
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~lv~e~~~~~   70 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSED--------SVFLVLQHAEGG   70 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCC--------eEEEEEecCCCC
Confidence            89999999985 478999999986543     2334455555667999999999887653        689999999999


Q ss_pred             ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc---
Q 004232          573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---  649 (766)
Q Consensus       573 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~---  649 (766)
                      +|.+++.+..   .+++.....++.++++||+|||+.   +|+||||||+||+++.++.+|++|||.+.........   
T Consensus        71 ~L~~~l~~~~---~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~  144 (237)
T cd05576          71 KLWSHISKFL---NIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAV  144 (237)
T ss_pred             CHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCc
Confidence            9999987543   388999999999999999999986   8999999999999999999999999987543321111   


Q ss_pred             --ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHH
Q 004232          650 --GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVIS  727 (766)
Q Consensus       650 --~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  727 (766)
                        ....++.......+.++||||+||++|||++|+.|+......       ..   ....+.-|   ...    ...+.+
T Consensus       145 ~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-------~~---~~~~~~~~---~~~----~~~~~~  207 (237)
T cd05576         145 ENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG-------IN---THTTLNIP---EWV----SEEARS  207 (237)
T ss_pred             CccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh-------cc---cccccCCc---ccC----CHHHHH
Confidence              011111112234566899999999999999998776422110       00   00000001   011    123678


Q ss_pred             HHHHhccCCCCCCCCHHHH
Q 004232          728 IANKCICSESWSRPSFEDI  746 (766)
Q Consensus       728 l~~~C~~~~p~~RPs~~ev  746 (766)
                      ++.+|++.||++||++.+.
T Consensus       208 li~~~l~~dp~~R~~~~~~  226 (237)
T cd05576         208 LLQQLLQFNPTERLGAGVA  226 (237)
T ss_pred             HHHHHccCCHHHhcCCCcc
Confidence            8999999999999997443

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=8.5e-28  Score=218.88  Aligned_cols=189  Identities=21%  Similarity=0.288  Sum_probs=146.0

Q ss_pred             CCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +|+..+.||+|.||+||||+ +++++.||+|++.-.+  ..-.....+|+.+++.++|+|||+++++.-.+        +
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsd--------k   74 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD--------K   74 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccC--------c
Confidence            35556789999999999998 6679999999886432  22245678899999999999999999876554        4


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .+.+|+|||.. +|..+...-..  .++......++.|+.+||.|+|++   .++|||+||.|.||+.+|+.|++|||++
T Consensus        75 kltlvfe~cdq-dlkkyfdslng--~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfgla  148 (292)
T KOG0662|consen   75 KLTLVFEFCDQ-DLKKYFDSLNG--DLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLA  148 (292)
T ss_pred             eeEEeHHHhhH-HHHHHHHhcCC--cCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchh
Confidence            78999999987 78877765432  378888889999999999999998   7899999999999999999999999999


Q ss_pred             cccccccccc--------cCCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCc-cc
Q 004232          641 IVSEDINSVG--------GKQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSV-AA  686 (766)
Q Consensus       641 ~~~~~~~~~~--------~~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p-~~  686 (766)
                      +...-.....        +.++... ...-++...|+||-|||+.|+.....| |+
T Consensus       149 rafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfp  204 (292)
T KOG0662|consen  149 RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_pred             hhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCC
Confidence            7643221111        1111111 112345667999999999999975444 54

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=5.3e-28  Score=238.76  Aligned_cols=249  Identities=21%  Similarity=0.314  Sum_probs=185.4

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      +++++-+-|     .++||+|+|+.|--+. ..+|..+|||++.+.....+.++.+|++++... .|+||++|+.||.++
T Consensus        74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd  148 (463)
T KOG0607|consen   74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD  148 (463)
T ss_pred             hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc
Confidence            356665555     3689999999999987 678999999999888777888999999999998 499999999999986


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-  630 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-  630 (766)
                      .        .+|||||-|.+|.|..+|+++.   .++..+..+++.+||.||.|||..   +|.||||||+|||-.... 
T Consensus       149 ~--------~FYLVfEKm~GGplLshI~~~~---~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~  214 (463)
T KOG0607|consen  149 T--------RFYLVFEKMRGGPLLSHIQKRK---HFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNK  214 (463)
T ss_pred             c--------eEEEEEecccCchHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCC
Confidence            4        7999999999999999998764   478888899999999999999997   999999999999986433 


Q ss_pred             --cEEEecCCCCcccccccc--cccCCC-----CCCcc-------------cCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          631 --IAKLSDYGLSIVSEDINS--VGGKQE-----DPNSW-------------EMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       631 --~~kl~DFGla~~~~~~~~--~~~~~~-----~~~~~-------------~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                        -+|||||-+..-......  ...+++     ....+             ..+..+.|.||+|||+|-|++|.+||...
T Consensus       215 vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  215 VSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             cCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence              489999988632211111  111110     00011             23445789999999999999999998642


Q ss_pred             cc----ch--------HHH-HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          689 GQ----FL--------QEE-LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       689 ~~----~~--------~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..    +.        +.. +.+  .++...+++|..+...     ..+..+++..-+..||.+|-++.+|+.
T Consensus       295 Cg~dCGWdrGe~Cr~CQ~~LFes--IQEGkYeFPdkdWahI-----S~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  295 CGADCGWDRGEVCRVCQNKLFES--IQEGKYEFPDKDWAHI-----SSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             cCCcCCccCCCccHHHHHHHHHH--HhccCCcCChhhhHHh-----hHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            11    10        111 111  1344566666554322     123567777788899999999988876

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-28  Score=274.10  Aligned_cols=208  Identities=21%  Similarity=0.291  Sum_probs=164.8

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccC---ChhhhHHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPS---SKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~---~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      .+++-..++|++.++||+|+||.|..++.+ +++.+|.|++++   .+......|..|-++|.-.+.+-||++.-+|.++
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            344445688999999999999999999864 688999999976   3445567899999999999999999999888876


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      .        .+|+|||||+||||-.++.+..   .++..-...++..|..||.-+|+.   |+|||||||.|||||..|+
T Consensus       148 ~--------~LYlVMdY~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GH  213 (1317)
T KOG0612|consen  148 R--------YLYLVMDYMPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGH  213 (1317)
T ss_pred             c--------ceEEEEecccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCc
Confidence            3        7999999999999999997654   366666677888999999999997   9999999999999999999


Q ss_pred             EEEecCCCCcccccccccc--cCCCCCC------------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          632 AKLSDYGLSIVSEDINSVG--GKQEDPN------------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~--~~~~~~~------------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      +|++|||-+......+.+.  .+-++|.            ....++.++|+||+||++|||+.|..||.  .+.+.+.+.
T Consensus       214 ikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY--adslveTY~  291 (1317)
T KOG0612|consen  214 IKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY--ADSLVETYG  291 (1317)
T ss_pred             EeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch--HHHHHHHHH
Confidence            9999999875443222211  1111111            12456778999999999999999999986  333444444


Q ss_pred             hh
Q 004232          698 SL  699 (766)
Q Consensus       698 ~~  699 (766)
                      .+
T Consensus       292 KI  293 (1317)
T KOG0612|consen  292 KI  293 (1317)
T ss_pred             HH
Confidence            43

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=5.1e-28  Score=238.24  Aligned_cols=193  Identities=21%  Similarity=0.304  Sum_probs=149.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec---C--CceEEEEEccCChhhh--HHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE---N--GTSVAIRCLPSSKKYT--VRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~---~--g~~vAvK~l~~~~~~~--~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..|+....||+|.||.||||...   +  ...+|+|+++..+...  .....||+.++++++|||+|.|..++...+   
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d---  100 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD---  100 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC---
Confidence            45888899999999999999632   2  2378999998764322  356789999999999999999999888743   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENT--PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH----  629 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~----  629 (766)
                          ..++|++||.+. ||.+.++-+.  ..+.++-.....|..||..|+.|||++   =|+||||||+|||+..+    
T Consensus       101 ----~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgper  172 (438)
T KOG0666|consen  101 ----KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPER  172 (438)
T ss_pred             ----ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCcc
Confidence                379999999998 8888775432  335677778889999999999999998   57999999999999866    


Q ss_pred             CcEEEecCCCCcccccccccc-----------cCC-CCCCcccCCCCCCCEeehhHHHHHHhcCCCccc
Q 004232          630 RIAKLSDYGLSIVSEDINSVG-----------GKQ-EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~  686 (766)
                      |.+||+|+|+++...+.-..-           +.. +......-++.+.||||.|||..||+|-++-|.
T Consensus       173 G~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~  241 (438)
T KOG0666|consen  173 GRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFK  241 (438)
T ss_pred             CeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCcccc
Confidence            899999999997654321110           011 111112346677899999999999999876654

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.95  E-value=7.6e-28  Score=236.09  Aligned_cols=248  Identities=17%  Similarity=0.284  Sum_probs=179.1

Q ss_pred             HhcCCCcC-CceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMS-AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .|++|.+. .+||-|--|+|..+.. .+++.+|+|.+....     ..++|+++.=.. .|||||+.+++|...-.    
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~-----KARrEVeLHw~~s~h~~iV~IidVyeNs~~----  129 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSP-----KARREVELHWMASGHPHIVSIIDVYENSYQ----  129 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCH-----HHHhHhhhhhhhcCCCceEEeehhhhhhcc----
Confidence            45667664 5789999999999874 579999999886543     345677765444 69999999998864311    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEE
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKL  634 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl  634 (766)
                      ....+.+|||+|+||+|+.-+++++. ..++..+.-.|+.+|+.|++|||+.   .|.||||||+|+|-..   +-..|+
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g~-~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKL  205 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRGD-QAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKL  205 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEe
Confidence            12468999999999999999987653 4588888999999999999999998   7999999999999874   457999


Q ss_pred             ecCCCCcccccccccccCCCCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCcc
Q 004232          635 SDYGLSIVSEDINSVGGKQEDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQ  706 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~~~~~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~  706 (766)
                      +|||+|+.........+....|.+       .+.+....|+||+||++|-|+.|.+||-..... ...-... .......
T Consensus       206 tDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~-rI~~gqy  284 (400)
T KOG0604|consen  206 TDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKR-RIRTGQY  284 (400)
T ss_pred             cccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHh-HhhccCc
Confidence            999999876543322221112211       133455679999999999999999998643221 1111111 1112344


Q ss_pred             ccccccccCCCCHHHH-HHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          707 RLVDPVVMATSSLESL-SIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~-~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ++.+|.+      .++ +...+++...+..+|++|-|..|++.
T Consensus       285 ~FP~pEW------s~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  285 EFPEPEW------SCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             cCCChhH------hHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            5555543      232 33677888889999999999999975

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.8e-28  Score=259.79  Aligned_cols=234  Identities=18%  Similarity=0.203  Sum_probs=173.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +++|++...+|.|+|+.|.++.. .+++..|||.+....    .+-.+|+.++... +||||+++.+.|.+..       
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~-------  389 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGK-------  389 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCc-------
Confidence            56788888899999999999984 568889999997652    2334566555555 7999999999998763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE-cCCCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl-d~~~~~kl~DFG  638 (766)
                       ..|+|||++.+|-+.+.+....    ..-..+..++.+++.|+.|||+.   +||||||||+|||+ ++.+++||+|||
T Consensus       390 -~~~~v~e~l~g~ell~ri~~~~----~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG  461 (612)
T KOG0603|consen  390 -EIYLVMELLDGGELLRRIRSKP----EFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFG  461 (612)
T ss_pred             -eeeeeehhccccHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEec
Confidence             7899999999999888776543    22256777999999999999996   99999999999999 588999999999


Q ss_pred             CCccccccc-----ccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDIN-----SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~-----~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      .++......     +..+..++......++.++||||+||+||||++|+.|+...... .+....+.. +...       
T Consensus       462 ~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~~i~~-~~~s-------  532 (612)
T KOG0603|consen  462 FWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHTRIQM-PKFS-------  532 (612)
T ss_pred             hhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHHhhcC-Cccc-------
Confidence            997654331     11111222222345677899999999999999999998754433 222222111 1000       


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           ..-...+.+|+.+|++.||.+||+|+|+..
T Consensus       533 -----~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  533 -----ECVSDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             -----cccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence                 111123678999999999999999999864

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=2.8e-27  Score=261.88  Aligned_cols=256  Identities=22%  Similarity=0.386  Sum_probs=191.4

Q ss_pred             HHHHHHHhcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       475 ~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ++.+...++-|++.++||.|.+|.||+++ .++|+.+|||++..... ..++.+.|.++++.. .|||++.++|++....
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~k~~   89 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFIKKD   89 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence            44455567789999999999999999998 56789999998865433 236677888888887 6999999999887543


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                      .   ...+++|||||||.+|+..++++... +..+.|.....|.+++.+|+++||.+   .++|||+|-.|||++.++.+
T Consensus        90 ~---~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~V  162 (953)
T KOG0587|consen   90 P---GNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEV  162 (953)
T ss_pred             C---CCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcE
Confidence            1   22358999999999999999987655 55689999999999999999999998   78999999999999999999


Q ss_pred             EEecCCCCcccccccccccCCCCCCcccC-------------CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh
Q 004232          633 KLSDYGLSIVSEDINSVGGKQEDPNSWEM-------------TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~~~~~~~~~~~~-------------~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~  699 (766)
                      |+.|||++...+.+.....+.-...+|+.             ++..+||||+|++-.||.-|.+|......  ...+-. 
T Consensus       163 KLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP--mraLF~-  239 (953)
T KOG0587|consen  163 KLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP--MRALFL-  239 (953)
T ss_pred             EEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch--hhhhcc-
Confidence            99999999766543322222222223333             23467999999999999999999753211  111111 


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           +.+-+.|.+..  +..-..++.+++..|+..|-.+||++.+.++
T Consensus       240 -----IpRNPPPkLkr--p~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  240 -----IPRNPPPKLKR--PKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             -----CCCCCCccccc--hhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence                 11112222221  1223455789999999999999999988764

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.9e-28  Score=237.78  Aligned_cols=234  Identities=21%  Similarity=0.261  Sum_probs=170.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|+..++||+|.||+|..++- .+|+.+|+|++++..   +........|-++|+..+||.+..|.-.+...     
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~-----  240 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQ-----  240 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccC-----
Confidence            357889999999999999999984 579999999998753   34455667788999999999999886555543     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         +.+|+||||+.+|.|..+|.+.   +.++......+-..|..||.|||++   +||.||||.+|.|+|.+|++||+|
T Consensus       241 ---drlCFVMeyanGGeLf~HLsre---r~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitD  311 (516)
T KOG0690|consen  241 ---DRLCFVMEYANGGELFFHLSRE---RVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITD  311 (516)
T ss_pred             ---ceEEEEEEEccCceEeeehhhh---hcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeee
Confidence               4799999999999999999754   3466666677888899999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc-cccCCCCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINS-VGGKQEDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~-~~~~~~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+.+.--.... ..+..+.|.+.       .-+....|+|..||+||||+.|+-||........-+   +..   ..++
T Consensus       312 FGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFe---LIl---~ed~  385 (516)
T KOG0690|consen  312 FGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFE---LIL---MEDL  385 (516)
T ss_pred             cccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHH---HHH---hhhc
Confidence            999864221111 11111122222       123456899999999999999999987543321111   111   1122


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                      .-|.-.   +.    ++..|..-.+..||.+|-
T Consensus       386 kFPr~l---s~----eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  386 KFPRTL---SP----EAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             cCCccC---CH----HHHHHHHHHhhcChHhhc
Confidence            222211   11    244566777889999994

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-27  Score=244.91  Aligned_cols=243  Identities=18%  Similarity=0.284  Sum_probs=173.3

Q ss_pred             CCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh-------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK-------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~-------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      |-+.+.||+|||..||||. +...+.||||+-...+       ....+...+|-.|.+.++||.||++|+|+.-+.    
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt----  540 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT----  540 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc----
Confidence            4456789999999999997 4557789999754321       223456778999999999999999999987543    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAK  633 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~k  633 (766)
                         +.+|-|+|||++.+|+-||..+.   .++..+...|+.||+.||.||.... |+|||=||||.||||-+   .|.+|
T Consensus       541 ---dsFCTVLEYceGNDLDFYLKQhk---lmSEKEARSIiMQiVnAL~YLNEik-pPIIHYDLKPgNILLv~GtacGeIK  613 (775)
T KOG1151|consen  541 ---DSFCTVLEYCEGNDLDFYLKQHK---LMSEKEARSIIMQIVNALKYLNEIK-PPIIHYDLKPGNILLVNGTACGEIK  613 (775)
T ss_pred             ---ccceeeeeecCCCchhHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhccC-CCeeeeccCCccEEEecCcccceeE
Confidence               36899999999999999998764   3788899999999999999999854 68999999999999953   47899


Q ss_pred             EecCCCCcccccccccc---------cCC---CCC-Cc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHH
Q 004232          634 LSDYGLSIVSEDINSVG---------GKQ---EDP-NS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQE  694 (766)
Q Consensus       634 l~DFGla~~~~~~~~~~---------~~~---~~~-~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~  694 (766)
                      |+|||+++..++.....         +.+   ..| ..      ....+.|+||||.|||+|..+.|+.||..... .++
T Consensus       614 ITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqs-QQd  692 (775)
T KOG1151|consen  614 ITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQS-QQD  692 (775)
T ss_pred             eeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchh-HHH
Confidence            99999998875432110         011   001 10      11234689999999999999999999974321 111


Q ss_pred             HHh--hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 004232          695 ELD--SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL  747 (766)
Q Consensus       695 ~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~  747 (766)
                      .+.  .+..   ..++--|.- +..+    .++..++.+|+++.-.+|-...|+.
T Consensus       693 ILqeNTIlk---AtEVqFP~K-PvVs----seAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  693 ILQENTILK---ATEVQFPPK-PVVS----SEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             HHhhhchhc---ceeccCCCC-CccC----HHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            111  1111   111111110 1111    2356788999999888887666554

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.95  E-value=1.1e-26  Score=238.11  Aligned_cols=231  Identities=24%  Similarity=0.325  Sum_probs=172.6

Q ss_pred             CceeEEEEEec-CCceEEEEEccCChhhh-HHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCC
Q 004232          495 SYGKLYKGRLE-NGTSVAIRCLPSSKKYT-VRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG  572 (766)
Q Consensus       495 ~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~G  572 (766)
                      +||.||+|+.. +|+.+|+|++....... .+.+.+|++.+++++|+|+++++|++....        ..++++||++++
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--------~~~l~~e~~~~~   72 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDED--------KLYLVMEYCDGG   72 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCC--------EEEEEEeCCCCC
Confidence            58999999976 58999999997654433 678999999999999999999999988753        689999999999


Q ss_pred             ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc---
Q 004232          573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---  649 (766)
Q Consensus       573 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~---  649 (766)
                      +|..++.....   +++..+..++.+++.+++|||+.   +++|+||+|+||++++++.++++|||.+.........   
T Consensus        73 ~L~~~~~~~~~---~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~  146 (244)
T smart00220       73 DLFDLLKKRGR---LSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTF  146 (244)
T ss_pred             CHHHHHHhccC---CCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccc
Confidence            99999875432   78899999999999999999997   8999999999999999999999999998655432110   


Q ss_pred             -c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHH
Q 004232          650 -G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIV  725 (766)
Q Consensus       650 -~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  725 (766)
                       +   ...++.......+.++||||||+++||+++|..|+..... ......... ...... ...  ...    ....+
T Consensus       147 ~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~-~~~~~~~~~-~~~~~~-~~~--~~~----~~~~~  217 (244)
T smart00220      147 VGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ-LLELFKKIG-KPKPPF-PPP--EWK----ISPEA  217 (244)
T ss_pred             cCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHh-ccCCCC-ccc--ccc----CCHHH
Confidence             0   0111111123455689999999999999999999864211 111111111 110100 000  000    12347


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHH
Q 004232          726 ISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       726 ~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+++.+|+..+|++||++.++++
T Consensus       218 ~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      218 KDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHHHHccCCchhccCHHHHhh
Confidence            78999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=3e-27  Score=269.99  Aligned_cols=260  Identities=13%  Similarity=0.116  Sum_probs=152.6

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-C----CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-N----GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~----g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..++|++.+.||+|+||.||+|+.. +    +..||||++......  +.+..|  .+....+.+++.++..+.....  
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~--e~~~~e--~l~~~~~~~~~~~~~~~~~~~~--  203 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAV--EIWMNE--RVRRACPNSCADFVYGFLEPVS--  203 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchh--HHHHHH--HHHhhchhhHHHHHHhhhcccc--
Confidence            4678999999999999999999964 4    689999987643221  111111  1222333444443332221110  


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCC-----------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPG-----------------KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-----------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      .......++||||+++|+|.+++......                 ..........++.|++.||+|||+.   +|+|||
T Consensus       204 ~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRD  280 (566)
T PLN03225        204 SKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRD  280 (566)
T ss_pred             cccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCc
Confidence            00114689999999999999988653210                 0011223456899999999999987   899999


Q ss_pred             CCCCceEEcC-CCcEEEecCCCCcccccccc------c---ccCCCCCCc---------------------c-cCCCCCC
Q 004232          619 VKTNNILLNE-HRIAKLSDYGLSIVSEDINS------V---GGKQEDPNS---------------------W-EMTKLED  666 (766)
Q Consensus       619 lk~~NILld~-~~~~kl~DFGla~~~~~~~~------~---~~~~~~~~~---------------------~-~~~~~~~  666 (766)
                      |||+|||+++ ++.+||+|||+|+.......      .   .+..++...                     | ..+..++
T Consensus       281 LKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~  360 (566)
T PLN03225        281 VKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF  360 (566)
T ss_pred             CCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc
Confidence            9999999995 57999999999964321100      0   000000000                     0 0123356


Q ss_pred             CEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-cCccccccccccCC----C--CHHHHHHHHHHHHHhccCCCCC
Q 004232          667 DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-EGRQRLVDPVVMAT----S--SLESLSIVISIANKCICSESWS  739 (766)
Q Consensus       667 DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~----~--~~~~~~~~~~l~~~C~~~~p~~  739 (766)
                      |||||||++|||+++..+.+.........+...... .......++.....    .  .........+|+.+|++.||.+
T Consensus       361 DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~k  440 (566)
T PLN03225        361 DIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQ  440 (566)
T ss_pred             ccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCccc
Confidence            999999999999998665432111110101000000 00000011100000    0  0000112457999999999999


Q ss_pred             CCCHHHHHHH
Q 004232          740 RPSFEDILWN  749 (766)
Q Consensus       740 RPs~~ev~~~  749 (766)
                      |||++|+++.
T Consensus       441 R~ta~e~L~H  450 (566)
T PLN03225        441 RISAKAALAH  450 (566)
T ss_pred             CCCHHHHhCC
Confidence            9999999864

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.7e-28  Score=233.48  Aligned_cols=259  Identities=17%  Similarity=0.277  Sum_probs=172.6

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccC--ChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPS--SKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~--~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |+-...||+|.||.||+|+. .+|+.||+|++-.  .+...-....+|+++|..++|+|++.++..|....+...-....
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            33456899999999999985 4678899886532  22223345678999999999999999999987643211101134


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +|+|+++|+. ||...|....  ..++..+..+++.++..||.|+|..   .|+|||+|++|+||+.++..||+|||+++
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~~--vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar  172 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNRK--VRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLAR  172 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCcc--ccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeecccccc
Confidence            8999999998 8888886543  2377888999999999999999998   78999999999999999999999999996


Q ss_pred             cccccccccc---------CCCCC----CcccCCCCCCCEeehhHHHHHHhcCCCccccCcc-chHHHHhhh----hccc
Q 004232          642 VSEDINSVGG---------KQEDP----NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-FLQEELDSL----NSQE  703 (766)
Q Consensus       642 ~~~~~~~~~~---------~~~~~----~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-~~~~~~~~~----~~~~  703 (766)
                      ..........         .+..|    .....++.+.|||.-||||.||.||.+-+..... .....+..+    ..+.
T Consensus       173 ~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkev  252 (376)
T KOG0669|consen  173 AFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEV  252 (376)
T ss_pred             ceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCccc
Confidence            5432111110         00011    1123456688999999999999999866543211 001111111    0000


Q ss_pred             C-------ccccc--cccccCCC--CHHHH------HHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 G-------RQRLV--DPVVMATS--SLESL------SIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 ~-------~~~~~--d~~~~~~~--~~~~~------~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +       ..+-+  .|......  -.+.+      ...++|+.+.+..||.+|+..++++..
T Consensus       253 WP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  253 WPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             CCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence            0       00000  10000000  01111      146789999999999999999888654

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=241.99  Aligned_cols=192  Identities=21%  Similarity=0.363  Sum_probs=150.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .+|....+||+|+||+|..|..+ +.+.+|||++++...   .+.+--..|-++|+-- +-|.++++..++..-      
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTm------  422 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTM------  422 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhh------
Confidence            46888999999999999999754 577899999986532   2233334455666544 678999998877664      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        +.+|+||||+.+|+|-.++++-+.   +..+....+|.+||-||-|||+.   +|+.||||..||+||.+|++||+||
T Consensus       423 --DRLyFVMEyvnGGDLMyhiQQ~Gk---FKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DF  494 (683)
T KOG0696|consen  423 --DRLYFVMEYVNGGDLMYHIQQVGK---FKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADF  494 (683)
T ss_pred             --hheeeEEEEecCchhhhHHHHhcc---cCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeec
Confidence              379999999999999999987543   55667788999999999999998   9999999999999999999999999


Q ss_pred             CCCccc--cccc-c-cccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          638 GLSIVS--EDIN-S-VGGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       638 Gla~~~--~~~~-~-~~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      |+++.-  +... . ..++    .++...+.++...+|+|||||+||||+.|++||+..
T Consensus       495 GmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  495 GMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             ccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence            998642  1111 1 1111    123334566777889999999999999999999843

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.1e-27  Score=224.39  Aligned_cols=250  Identities=19%  Similarity=0.310  Sum_probs=181.0

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.+|+|.|+.|+.|. ..+.+.++||.++..++   +.+++|+.+|..++ |||||+|++...++.+      
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~S------  107 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPES------  107 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccc------
Confidence            4678888999999999999998 56788899999976543   67899999999997 9999999999988764      


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFG  638 (766)
                      ....||+||+.+-+..+.-.      .++-.....++.++.+||.|+|+.   ||+|||+||.|++||. .-..++.|+|
T Consensus       108 ktpaLiFE~v~n~Dfk~ly~------tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWG  178 (338)
T KOG0668|consen  108 KTPSLIFEYVNNTDFKQLYP------TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWG  178 (338)
T ss_pred             cCchhHhhhhccccHHHHhh------hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecc
Confidence            35689999999999887653      255667778899999999999998   9999999999999994 5679999999


Q ss_pred             CCccccccccc----cc---CC-CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH--HhhhhcccCcc--
Q 004232          639 LSIVSEDINSV----GG---KQ-EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE--LDSLNSQEGRQ--  706 (766)
Q Consensus       639 la~~~~~~~~~----~~---~~-~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~--~~~~~~~~~~~--  706 (766)
                      +|.+.......    +.   ++ +....+..+...-|+|||||++.+|+..+.||..+.+.....  +..+...+...  
T Consensus       179 LAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Y  258 (338)
T KOG0668|consen  179 LAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAY  258 (338)
T ss_pred             hHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHH
Confidence            99665432211    11   11 122233456667799999999999999999987543321111  11111110000  


Q ss_pred             -----ccccccccC----------------CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 -----RLVDPVVMA----------------TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 -----~~~d~~~~~----------------~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           --.||....                +...-...++++++.+.+.+|-++|||++|.+..
T Consensus       259 l~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  259 LNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             HHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence                 001221110                0000012457899999999999999999998754

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-26  Score=216.34  Aligned_cols=196  Identities=22%  Similarity=0.343  Sum_probs=149.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHH-HHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDL-LAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~-l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++......||+|+||.|-+-+. .+|+..|||++...- .+..++..+|+++ ++....|.+|.++|...+.+       
T Consensus        46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg-------  118 (282)
T KOG0984|consen   46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG-------  118 (282)
T ss_pred             hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc-------
Confidence            3344456799999999988874 579999999997542 3445667778876 45568999999999887764       


Q ss_pred             ceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       .+++.||.|.- +|..+-++. ..+..++....-+||..|..||.|||+..  .++|||+||+|||++.+|++|+||||
T Consensus       119 -dvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFG  194 (282)
T KOG0984|consen  119 -DVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFG  194 (282)
T ss_pred             -cEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccc
Confidence             68999999975 666554331 12334677778899999999999999974  79999999999999999999999999


Q ss_pred             CCccccccc----ccccCCCCC-C------cccCCCCCCCEeehhHHHHHHhcCCCccccCc
Q 004232          639 LSIVSEDIN----SVGGKQEDP-N------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKG  689 (766)
Q Consensus       639 la~~~~~~~----~~~~~~~~~-~------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~  689 (766)
                      ++....+.-    ..++++..+ .      ....++.++||||+|+.+.||.+++.|++...
T Consensus       195 IsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~  256 (282)
T KOG0984|consen  195 ISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWG  256 (282)
T ss_pred             cceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccC
Confidence            996654321    122222111 1      11356779999999999999999999997544

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-26  Score=237.84  Aligned_cols=236  Identities=19%  Similarity=0.312  Sum_probs=168.4

Q ss_pred             CCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      .++||+|.||+||-|.. ++|+.||||.+.+.+  ......++.|+.||.+++||.||.|--.|..+        +.++.
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~--------ervFV  640 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETP--------ERVFV  640 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCC--------ceEEE
Confidence            47899999999999985 579999999997653  23347789999999999999999998777765        37999


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEecCCCCc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RIAKLSDYGLSI  641 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~~kl~DFGla~  641 (766)
                      |||-+.+.-|.-.|.... + .|+......++.||..||.|||..   +|+|+||||+|||+.+.   .++|+||||+|+
T Consensus       641 VMEKl~GDMLEMILSsEk-g-RL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfAR  715 (888)
T KOG4236|consen  641 VMEKLHGDMLEMILSSEK-G-RLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFAR  715 (888)
T ss_pred             EehhhcchHHHHHHHhhc-c-cchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeecccccee
Confidence            999987644444444332 2 266666677889999999999997   89999999999999743   379999999998


Q ss_pred             ccccccccccCCCCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          642 VSEDINSVGGKQEDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      ...+..-....-+.|.+.       ..+...-|+||.|||+|.-++|-.||.++++. .+.+..      ..-+..|...
T Consensus       716 iIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdI-ndQIQN------AaFMyPp~PW  788 (888)
T KOG4236|consen  716 IIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDI-NDQIQN------AAFMYPPNPW  788 (888)
T ss_pred             ecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccch-hHHhhc------cccccCCCch
Confidence            876543221111222222       23444569999999999999999999754432 111111      1111122222


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDIL  747 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~  747 (766)
                      .+.+    ..+++++..-++..-.+|-|.++-+
T Consensus       789 ~eis----~~AidlIn~LLqVkm~kRysvdk~l  817 (888)
T KOG4236|consen  789 SEIS----PEAIDLINNLLQVKMRKRYSVDKSL  817 (888)
T ss_pred             hhcC----HHHHHHHHHHHHHHHHHhcchHhhc
Confidence            2222    3367788888888888888877654

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-25  Score=245.80  Aligned_cols=236  Identities=21%  Similarity=0.315  Sum_probs=161.9

Q ss_pred             CCcCCceecCCcee-EEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGK-LYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~-Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      |.-.+++|.|+-|+ ||+|.++ |+.||||++-..   ......+||+.|+.- +|||||++++  .+.+      ....
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc--~E~d------~qF~  578 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYC--SEQD------RQFL  578 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEe--eccC------CceE
Confidence            44567889998875 8999986 789999987432   234567899999887 5999999964  4432      1479


Q ss_pred             EEEEEccCCCChhhhhhcCCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---C--CcEEEec
Q 004232          563 FLVYEFMSNGNFRTHISENTPG-KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---H--RIAKLSD  636 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~--~~~kl~D  636 (766)
                      |+..|.|.- +|.+++...... ....-.....+..|+++|+++||+.   +||||||||.||||+.   +  ..|+|+|
T Consensus       579 YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSD  654 (903)
T KOG1027|consen  579 YIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISD  654 (903)
T ss_pred             EEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecc
Confidence            999999987 999998763111 1111133466788999999999996   8999999999999986   3  4799999


Q ss_pred             CCCCccccccccccc---CCCCCCcccC--------CCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccC
Q 004232          637 YGLSIVSEDINSVGG---KQEDPNSWEM--------TKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       637 FGla~~~~~~~~~~~---~~~~~~~~~~--------~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ||+++......+...   .......|..        .+..+|++|+|||+|..+|| +.||..   ...+....+.....
T Consensus       655 fglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd---~~~R~~NIl~~~~~  731 (903)
T KOG1027|consen  655 FGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGD---SLERQANILTGNYT  731 (903)
T ss_pred             cccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCc---hHHhhhhhhcCccc
Confidence            999976543222111   1111222322        23467999999999999997 888853   22222222211111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...+      .+. .++  ++.+|+.+.+..+|..||++.+|+.
T Consensus       732 L~~L------~~~-~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  732 LVHL------EPL-PDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             eeee------ccC-chH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            1111      111 111  5779999999999999999999973

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-26  Score=245.30  Aligned_cols=268  Identities=23%  Similarity=0.234  Sum_probs=179.2

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      |+.|.+...--+++..=.++++|+|++|.|+..--+.|.+|.+|..|-|++|+++...+..|.+|++|+.|+|..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            44444333333344444556666666666655555556666666666666666654444555556666666666665543


Q ss_pred             CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCC---C
Q 004232          181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPK---L  256 (766)
Q Consensus       181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~---~  256 (766)
                      .---.|.+|++|+.|.|..|.++..-...|..|.++++|+|+.|+++..-.. +.+|+.|+.|+||+|.+...-++   .
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            3233455666666666666666655555666677777777777777654332 66778888888888877654443   3


Q ss_pred             CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCc---cCCCCCCcc
Q 004232          257 PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK---NLNCGGKLV  333 (766)
Q Consensus       257 ~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~---~~~~~~~L~  333 (766)
                      .+.|..|+|++|+++..-+..|..+.+|++|+|++|.++.+-...|..+++|+.|||++|.+++.|.+   .|..+.+|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            46778888888888877778888888888888888888877777788888888888888888877654   356677888


Q ss_pred             EEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          334 FFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       334 ~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      .|++.+|++....-..+..+..|..|++.+|.+.+
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCccee
Confidence            88888888875555567778888888888887654

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.92  E-value=2.7e-24  Score=214.78  Aligned_cols=202  Identities=27%  Similarity=0.474  Sum_probs=164.3

Q ss_pred             eecCCceeEEEEEecC-CceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEc
Q 004232          491 MGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEF  568 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey  568 (766)
                      ||+|++|.||+++... ++.+++|++...... ..+.+.+|++.+++++|++++++++++....        ..++++||
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~--------~~~~~~e~   72 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDEN--------HLYLVMEY   72 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCC--------eEEEEEec
Confidence            6899999999999754 899999998765432 4567899999999999999999999988653        68999999


Q ss_pred             cCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCCCCccccccc
Q 004232          569 MSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGLSIVSEDIN  647 (766)
Q Consensus       569 ~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFGla~~~~~~~  647 (766)
                      +++++|.+++....  ..+++..+..++.+++++++|||+.   +++|+||+|.||+++. ++.++|+|||.+.......
T Consensus        73 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~  147 (215)
T cd00180          73 CEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDK  147 (215)
T ss_pred             CCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCc
Confidence            99999999987542  2478999999999999999999997   8999999999999998 8999999999986543321


Q ss_pred             --c--c----ccCCCCCCccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCC
Q 004232          648 --S--V----GGKQEDPNSWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS  718 (766)
Q Consensus       648 --~--~----~~~~~~~~~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  718 (766)
                        .  .    ....++..... ..+.++|+|++|++++|+                                        
T Consensus       148 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------------------------------  187 (215)
T cd00180         148 SLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------------------------------  187 (215)
T ss_pred             chhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----------------------------------------
Confidence              0  0    00111111111 445678999999999998                                        


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          719 LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       719 ~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ..+.+++.+|++.+|++||++.++++.
T Consensus       188 ----~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 ----PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             ----HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                236788999999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.7e-25  Score=234.80  Aligned_cols=154  Identities=21%  Similarity=0.364  Sum_probs=128.0

Q ss_pred             cCHHHHHHHhc---CCCcCCceecCCceeEEEEE-ecCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCccccc
Q 004232          473 FTLEELKEATN---NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLL  545 (766)
Q Consensus       473 ~~~~~l~~~~~---~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~  545 (766)
                      ..|-.|+++.-   -|...+.||-|+||+|.+++ .++...+|.|.+.+.+   ......++.|-+||+..+.+-||+|+
T Consensus       616 SnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLy  695 (1034)
T KOG0608|consen  616 SNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLY  695 (1034)
T ss_pred             hhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEE
Confidence            34556666643   36667889999999999997 4567788999987654   34466788999999999999999999


Q ss_pred             ceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceE
Q 004232          546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNIL  625 (766)
Q Consensus       546 g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NIL  625 (766)
                      -.|.+.+        .+|+||||++|||+-.+|-+.+   .+...-...++.++..|+++.|..   |+|||||||.|||
T Consensus       696 ySFQDkd--------nLYFVMdYIPGGDmMSLLIrmg---IFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNIL  761 (1034)
T KOG0608|consen  696 YSFQDKD--------NLYFVMDYIPGGDMMSLLIRMG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNIL  761 (1034)
T ss_pred             EEeccCC--------ceEEEEeccCCccHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceE
Confidence            7777653        7999999999999999887553   355555666778899999999987   9999999999999


Q ss_pred             EcCCCcEEEecCCCC
Q 004232          626 LNEHRIAKLSDYGLS  640 (766)
Q Consensus       626 ld~~~~~kl~DFGla  640 (766)
                      ||.+|++|++||||.
T Consensus       762 IDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  762 IDRDGHIKLTDFGLC  776 (1034)
T ss_pred             EccCCceeeeecccc
Confidence            999999999999997

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=5.7e-26  Score=240.25  Aligned_cols=271  Identities=20%  Similarity=0.211  Sum_probs=152.8

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      ++++|.+.+.-+..|-++++|+.++|..|.++ .+|...+...+|+.|+|.+|.|+..-..++..++.|+.||||.|.++
T Consensus        84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is  162 (873)
T KOG4194|consen   84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS  162 (873)
T ss_pred             eccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence            45556555555566677777777777777663 45554444555777777777666555566666666666666666666


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCC------
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSN------  252 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~------  252 (766)
                      ...-..|..=.++++|+|++|+|+..-...|.++.+|..|.|+.|+++..++. |.+|+.|+.|+|..|++.-.      
T Consensus       163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence            54445555556666666666666655556666666666666666666644332 55566666666666665321      


Q ss_pred             ------------------CCCC---CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeE
Q 004232          253 ------------------LPKL---PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDL  311 (766)
Q Consensus       253 ------------------~p~~---~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L  311 (766)
                                        -...   ..++..++|..|+++..-..++-+++.|+.|+||+|.+..+-++++.-+++|+.|
T Consensus       243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L  322 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL  322 (873)
T ss_pred             CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence                              1100   1234444455555544444444445555555555555555444444445555555


Q ss_pred             EeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCCcC
Q 004232          312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       312 ~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~~~  371 (766)
                      +|++|+++..-+.+|..+..|+.|+|++|.++..--..+..+++|+.|+++.|.++..++
T Consensus       323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             eccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            555555554444444455555555555555443333344455566666666666655443

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=8.5e-25  Score=216.96  Aligned_cols=192  Identities=22%  Similarity=0.344  Sum_probs=149.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.++||+|+|++|..+++ ++.+.+|+|++++.-   .++..=++.|-.+..+. +||.+|.+..++...     
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqte-----  323 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTE-----  323 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhccc-----
Confidence            46799999999999999999985 468899999987642   22233344555555555 799999999877654     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..+++|.||+++|+|--+.++.+   .++......+...|..||.|||++   +|+.||||..|||+|..|++|++|
T Consensus       324 ---srlffvieyv~ggdlmfhmqrqr---klpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltd  394 (593)
T KOG0695|consen  324 ---SRLFFVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTD  394 (593)
T ss_pred             ---ceEEEEEEEecCcceeeehhhhh---cCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecc
Confidence               37899999999999988876543   377888888888999999999998   999999999999999999999999


Q ss_pred             CCCCcccc---ccccccc-CC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          637 YGLSIVSE---DINSVGG-KQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       637 FGla~~~~---~~~~~~~-~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ||+.+.--   +..+..+ ++    ++......+....|+|++||+|+||+.|++||+-
T Consensus       395 ygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdi  453 (593)
T KOG0695|consen  395 YGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  453 (593)
T ss_pred             cchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence            99986421   2221111 11    1112334456678999999999999999999974

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=3e-25  Score=231.32  Aligned_cols=234  Identities=15%  Similarity=0.226  Sum_probs=171.3

Q ss_pred             CCCcCCceecCCceeEEEEEecCCc-eEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~-~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +++....||-|+||.|-........ ..|+|++++..   ....+.+..|-.+|-+.+.|.||++|--|.+.        
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~--------  492 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDS--------  492 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccc--------
Confidence            4445567999999999998876433 47888887543   34456788899999999999999999887765        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      +.+|+.||-|-||.+...+++++.   ++......++..+.+|++|||++   +||.|||||+|.+||.+|.+|+-|||+
T Consensus       493 kyvYmLmEaClGGElWTiLrdRg~---Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGF  566 (732)
T KOG0614|consen  493 KYVYMLMEACLGGELWTILRDRGS---FDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGF  566 (732)
T ss_pred             hhhhhhHHhhcCchhhhhhhhcCC---cccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhh
Confidence            378999999999999999987653   66667777888999999999997   899999999999999999999999999


Q ss_pred             CcccccccccccCCCCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDINSVGGKQEDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~~~~~~~~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+........-+..++|.+.       ......+|.||+|+++||++||++||....+  ......+..  .+..+--|.
T Consensus       567 AKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dp--mktYn~ILk--Gid~i~~Pr  642 (732)
T KOG0614|consen  567 AKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDP--MKTYNLILK--GIDKIEFPR  642 (732)
T ss_pred             HHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCch--HHHHHHHHh--hhhhhhccc
Confidence            98765433222211222222       2233467999999999999999999974332  222222211  111111111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS  742 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs  742 (766)
                             .-.....+++++.+..+|.+|--
T Consensus       643 -------~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  643 -------RITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             -------ccchhHHHHHHHHHhcCcHhhhc
Confidence                   11123567888888899999964

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.91  E-value=3e-24  Score=218.19  Aligned_cols=254  Identities=17%  Similarity=0.249  Sum_probs=175.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCC--C----CcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH--P----HLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~H--p----niv~l~g~~~~~~~~  554 (766)
                      ++.|.+...+|+|.||.|-.+.. +.+..||||+++...+. .+.-..|++++.++.+  |    -+|++.+++.-.   
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kY-reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyr---  163 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKY-REAALIEIEVLQKINESDPNGKFRCVQMRDWFDYR---  163 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhcc---
Confidence            67788999999999999999863 35889999999865543 3556679999999943  2    267776666544   


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-----
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-----  629 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-----  629 (766)
                           ...|+|+|.+. -++.+++.++. ..+++-.....++.|+.++++|||+.   .++|-||||+|||+-+.     
T Consensus       164 -----ghiCivfellG-~S~~dFlk~N~-y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~  233 (415)
T KOG0671|consen  164 -----GHICIVFELLG-LSTFDFLKENN-YIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKT  233 (415)
T ss_pred             -----CceEEEEeccC-hhHHHHhccCC-ccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEE
Confidence                 37899999774 38999998754 34577788899999999999999998   89999999999998431     


Q ss_pred             ---------------CcEEEecCCCCccccccccc-----ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCc
Q 004232          630 ---------------RIAKLSDYGLSIVSEDINSV-----GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKG  689 (766)
Q Consensus       630 ---------------~~~kl~DFGla~~~~~~~~~-----~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~  689 (766)
                                     ..+||.|||-|.......+.     .+..++..-...-+.++||||+||||.|+.||..-|...+
T Consensus       234 ~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  234 YNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             eccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC
Confidence                           24899999998765433211     1122222222334568999999999999999988776433


Q ss_pred             cch-HHHHhhhhcc--------c--------Cc------------cccccccc----cCCCCHHHHHHHHHHHHHhccCC
Q 004232          690 QFL-QEELDSLNSQ--------E--------GR------------QRLVDPVV----MATSSLESLSIVISIANKCICSE  736 (766)
Q Consensus       690 ~~~-~~~~~~~~~~--------~--------~~------------~~~~d~~~----~~~~~~~~~~~~~~l~~~C~~~~  736 (766)
                      ... ......+..+        .        ..            ..+.++..    .......+..++.+|+.+.+..|
T Consensus       314 n~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fD  393 (415)
T KOG0671|consen  314 NLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFD  393 (415)
T ss_pred             cHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccC
Confidence            111 0011111000        0        00            00011000    00112345567999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 004232          737 SWSRPSFEDILWN  749 (766)
Q Consensus       737 p~~RPs~~ev~~~  749 (766)
                      |.+|+|++|+++.
T Consensus       394 P~~RiTl~EAL~H  406 (415)
T KOG0671|consen  394 PARRITLREALSH  406 (415)
T ss_pred             ccccccHHHHhcC
Confidence            9999999998753

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.90  E-value=3.4e-23  Score=209.95  Aligned_cols=190  Identities=26%  Similarity=0.418  Sum_probs=154.3

Q ss_pred             CCcCCceecCCceeEEEEEecC-CceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      |++.+.||+|++|.||+|.... ++.+|+|.+...... ..+.+.+|++.+++++|+|++++++++....        ..
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~--------~~   72 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPE--------PL   72 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCC--------ce
Confidence            4566889999999999999764 889999999765444 5678999999999999999999999987653        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++++||+++++|.+++.....  .+++.....++.+++.++.|||+.   +++|+|++++||+++.++.++|+|||.+..
T Consensus        73 ~~v~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~  147 (225)
T smart00221       73 YLVMEYCEGGDLFDYLRKKGG--KLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARF  147 (225)
T ss_pred             EEEEeccCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeE
Confidence            999999999999999876432  178899999999999999999997   899999999999999999999999999865


Q ss_pred             ccccc----c--ccc---CCCCCC-cccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          643 SEDIN----S--VGG---KQEDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       643 ~~~~~----~--~~~---~~~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .....    .  ...   ..++.. .....+.++||||||++++||++|+.||..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      148 IHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            43321    0  000   111111 113344589999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=3.6e-26  Score=242.69  Aligned_cols=256  Identities=26%  Similarity=0.329  Sum_probs=185.4

Q ss_pred             CCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCc-cCCCccCCCCCCCCEEEccCCcCCCCCCcc
Q 004232          107 IDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLF-GSVPPKISTMVKLQTLILDDNFFNNTIPNW  185 (766)
Q Consensus       107 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  185 (766)
                      ...+|+.++.|.+|++|++++|++... -..++.|+.|+.+++..|++. .-+|+.+..|..|..||||+|++. ..|..
T Consensus        44 L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~  121 (1255)
T KOG0444|consen   44 LEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN  121 (1255)
T ss_pred             hhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh
Confidence            456899999999999999999998654 356888999999999999985 348899999999999999999998 78988


Q ss_pred             cCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCC----CCCCC-----
Q 004232          186 FDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS----NLPKL-----  256 (766)
Q Consensus       186 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~----~~p~~-----  256 (766)
                      +..-+++-+|+|++|+|....-+-|-+|+.|-.||||+|++...+|.+..|..|++|+|++|.+.-    .+|.+     
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v  201 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV  201 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence            999999999999999998443345689999999999999999999999999999999999997742    12221     


Q ss_pred             -------------C------CCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCc
Q 004232          257 -------------P------RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK  317 (766)
Q Consensus       257 -------------~------~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  317 (766)
                                   |      .+|..++||.|++. .+|+.+-++.+|+.|+||+|+++.+-. ....+.+|++|+||.|+
T Consensus       202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccch
Confidence                         1      23444555555555 455555555556666666665554432 33444555666666666


Q ss_pred             CcccCCccCCCCCCccEEeCcCCccc-cCCCCCCCCCCCCceeecCCCcCC
Q 004232          318 FSGSLPKNLNCGGKLVFFDISNNKLT-GGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       318 l~g~~p~~~~~~~~L~~L~ls~N~l~-g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      ++ .+|+.++.+++|+.|.+.+|+++ ..+|+.++.+..|.++..++|.+.
T Consensus       280 Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  280 LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             hc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence            65 55666666666666666666554 235666666666666666666543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-24  Score=209.34  Aligned_cols=193  Identities=17%  Similarity=0.304  Sum_probs=147.5

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .+..+-||-|+||+||..+. ++|+.||.|++...-  ....+++.+|+++|..++|.|++..++....+.  .+ -.++
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph--~d-fFqE  131 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPAN--PS-FFQE  131 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCC--ch-HHHH
Confidence            34568899999999999885 479999999987542  344678899999999999999999988654431  11 1246


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +|.++|.|.. ||.+.+-.-   ..++-....-+..||.+||.|||+.   +|+||||||.|.|++.+...||||||+++
T Consensus       132 iYV~TELmQS-DLHKIIVSP---Q~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  132 LYVLTELMQS-DLHKIIVSP---QALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HHHHHHHHHh-hhhheeccC---CCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEeccccccc
Confidence            7889999876 787776532   2366667777889999999999997   89999999999999999999999999998


Q ss_pred             ccccccccccC----------CCCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          642 VSEDINSVGGK----------QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       642 ~~~~~~~~~~~----------~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ..+.......+          ++.......++...||||.|||..|++-.+.-|..
T Consensus       205 vee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQA  260 (449)
T KOG0664|consen  205 TWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQA  260 (449)
T ss_pred             ccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhc
Confidence            75433221111          11112223466688999999999999987766653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.90  E-value=2.8e-23  Score=240.68  Aligned_cols=312  Identities=22%  Similarity=0.340  Sum_probs=159.5

Q ss_pred             CChHHHHHHHHHHHcCCCCCCCCC----ccCCCCCCCCCCC-----------CCccceEecCCCEEEEEeCCCCCCCCC-
Q 004232           26 LQSSQTQVLLQLRKHLEYPKQLEI----WINHGADFCYISS-----------STQVNITCQDNFITELKIIGDKPSNVG-   89 (766)
Q Consensus        26 ~~~~~~~aLl~~k~~~~~~~~l~~----W~~~~~~~C~~~~-----------~~~~gv~C~~~~v~~l~l~~~~~~~~~-   89 (766)
                      ..+.|.+.+++..+.+.-|+.+++    |+.. .++|.-..           .+...|.|..+.||.+.+.|....... 
T Consensus        60 ~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~~~  138 (754)
T PRK15370         60 ASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSAS  138 (754)
T ss_pred             CCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecCCCcccccccccccccccCC
Confidence            567899999999999988876655    9765 79998765           466779999889999998775432211 


Q ss_pred             -CCCccccc--------cccCCCcccCCcccccc-----cCCCCCCEEecccccccccCCccccCCCCCCEEecccccCc
Q 004232           90 -NFDGFASA--------NASLSENFSIDSFVTTL-----ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLF  155 (766)
Q Consensus        90 -~~~~~~~~--------~~~l~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~  155 (766)
                       .-+...+.        .....+.   ..--..+     .-..+.+.|+|++++++. +|..+.  ++|+.|+|++|+|+
T Consensus       139 ~~~~~~~~~~~w~~w~~~~~~~~~---~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt  212 (754)
T PRK15370        139 GSKDAVNYELIWSEWVKEAPAKEA---ANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK  212 (754)
T ss_pred             CCCChhhHHHHHHHHHhcCCCCcc---ccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC
Confidence             10000000        0000000   0000000     111234555555555542 444332  34556666666555


Q ss_pred             cCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCC
Q 004232          156 GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSS  235 (766)
Q Consensus       156 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  235 (766)
                       .+|..+.  .+|++|+|++|+|+ .+|..+.  .+|+.|+|++|++. .+|..+.  ++|+.|+|++|+++..+..+. 
T Consensus       213 -sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~-  282 (754)
T PRK15370        213 -SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP-  282 (754)
T ss_pred             -cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC-
Confidence             3444332  35566666666555 3344332  24555666666555 4454442  355556666555553222222 


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeec
Q 004232          236 LGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS  315 (766)
Q Consensus       236 l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  315 (766)
                       ++|+.|++++|+|++..+.++.++..|++++|+++. +|..+  .++|+.|++++|.+++++. .+.  ++|+.|+|++
T Consensus       283 -~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l~--~sL~~L~Ls~  355 (754)
T PRK15370        283 -EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPA-SLP--PELQVLDVSK  355 (754)
T ss_pred             -CCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCCh-hhc--CcccEEECCC
Confidence             355555666655554333344455555555555553 33322  1355555555555555332 221  4555555555


Q ss_pred             CcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          316 NKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       316 N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      |+|+ .+|..+.  .+|+.|+|++|+|+ .+|..+.  ..++.|++++|.++
T Consensus       356 N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        356 NQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             CCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            5555 3444332  34555555555555 3343332  13455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=1.2e-25  Score=238.68  Aligned_cols=251  Identities=30%  Similarity=0.334  Sum_probs=174.3

Q ss_pred             ccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCC
Q 004232          110 FVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL  189 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  189 (766)
                      .|..+.+-.++-+|+||+|+|..+.-..|.+|+.|-+||||+|++. .+|+.+..|.+|++|.|++|.+.----..+-.|
T Consensus       118 vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm  196 (1255)
T KOG0444|consen  118 VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM  196 (1255)
T ss_pred             cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence            3444444444444444444443222223444555555555555543 344445555555555555554432211222344


Q ss_pred             CCCCEEEccCccCC-CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCcEEEcc
Q 004232          190 PSLTFLSMRNNKLA-GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK--LPRGLVMAFLS  266 (766)
Q Consensus       190 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~l~ls  266 (766)
                      ++|++|.+++.+-+ ..+|.++..|.+|..+|||.|++.-.+..+.++.+|+.|+||+|+++..--.  ...++..|+||
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS  276 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS  276 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc
Confidence            45555555544322 3578888888899999999999886655688889999999999988753222  23567888999


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCcCC--CCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          267 NNSFSGEIPKQYGQLNQLQQLDMSFNALR--GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       267 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      .|+++ .+|+.+..++.|+.|.+.+|+++  | +|..++.+.+|+.+..++|++. .+|+.++.|..|+.|.|++|.+. 
T Consensus       277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG-iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-  352 (1255)
T KOG0444|consen  277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG-IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-  352 (1255)
T ss_pred             cchhc-cchHHHhhhHHHHHHHhccCcccccC-CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-
Confidence            99998 68999999999999999999875  4 4567899999999999999987 88999999999999999999987 


Q ss_pred             CCCCCCCCCCCCceeecCCCc
Q 004232          345 GLPSCLSNESDKRVVKFRGNC  365 (766)
Q Consensus       345 ~~p~~~~~~~~l~~l~l~~N~  365 (766)
                      .+|..+.-++.+.+|+++.|.
T Consensus       353 TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  353 TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             echhhhhhcCCcceeeccCCc
Confidence            789999889999999999885

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.89  E-value=7.1e-24  Score=228.05  Aligned_cols=245  Identities=18%  Similarity=0.292  Sum_probs=177.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..++|+....+|.|.||.|||++ ...++..|||.++-.......-..+|+-+++..+|||||.++|-+...+       
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~d-------   85 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD-------   85 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhc-------
Confidence            45788899999999999999998 4579999999998776666777888999999999999999999887653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..|+.||||.+|+|++.-+-..   +++..+...+.+...+|++|||+.   +=+|||||-.|||+.+.+.+|++|||.
T Consensus        86 -klwicMEycgggslQdiy~~Tg---plselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgv  158 (829)
T KOG0576|consen   86 -KLWICMEYCGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGV  158 (829)
T ss_pred             -CcEEEEEecCCCcccceeeecc---cchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCc
Confidence             6899999999999999766443   377777777888999999999997   558999999999999999999999999


Q ss_pred             CcccccccccccCCCCCCccc-----------CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc-Cccc
Q 004232          640 SIVSEDINSVGGKQEDPNSWE-----------MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE-GRQR  707 (766)
Q Consensus       640 a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~-~~~~  707 (766)
                      +......-..........+|+           .+...+|||+.|+.-.|+.--.+|..+...  .....-+.... ....
T Consensus       159 saqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhp--mr~l~LmTkS~~qpp~  236 (829)
T KOG0576|consen  159 SAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHP--MRALFLMTKSGFQPPT  236 (829)
T ss_pred             hhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccch--HHHHHHhhccCCCCCc
Confidence            844321110000001112333           344578999999999998877766432111  01000011111 1112


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..|+.-.       ...+-++++.|+-.+|++||+.+..+.
T Consensus       237 lkDk~kw-------s~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  237 LKDKTKW-------SEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             ccCCccc-------hHHHHHHHHHHhcCCCccCCChhhhee
Confidence            2222211       122557788999999999999876543

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.89  E-value=5.4e-23  Score=199.46  Aligned_cols=243  Identities=17%  Similarity=0.262  Sum_probs=164.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.|.+.+.+|+|.||.+..++.+ +.+.+++|.++... ...++|.+|..---.+ .|.||+.-+++..+..       +
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~-------d   95 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTS-------D   95 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcC-------c
Confidence            56788899999999999999865 57789999887543 3457888887544444 4899999887655432       3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CC-CcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EH-RIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~-~~~kl~DFG  638 (766)
                      .+++++||+|.|||..-+...+    +......+++.|++.|+.|+|+.   .+||||||.+||||- .+ ..+|+||||
T Consensus        96 ~YvF~qE~aP~gdL~snv~~~G----igE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG  168 (378)
T KOG1345|consen   96 AYVFVQEFAPRGDLRSNVEAAG----IGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFG  168 (378)
T ss_pred             eEEEeeccCccchhhhhcCccc----ccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecc
Confidence            6889999999999998775433    56667788999999999999997   799999999999994 33 479999999


Q ss_pred             CCccccccccc-c-----cCCC----CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch---HHHHhhh-hcccC
Q 004232          639 LSIVSEDINSV-G-----GKQE----DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL---QEELDSL-NSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~-~-----~~~~----~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~---~~~~~~~-~~~~~  704 (766)
                      ++......... .     ..++    .+...-...+.+|||.||++++-.+||+.|+.......   .++.... .....
T Consensus       169 ~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~  248 (378)
T KOG1345|consen  169 LTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPA  248 (378)
T ss_pred             cccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCcc
Confidence            98544321110 0     0000    00111112345799999999999999999987432211   1211111 11111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+.+.+     .+    ..++++-++-+..+|.+|--..++-++
T Consensus       249 ~P~~F~~-----fs----~~a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  249 LPKKFNP-----FS----EKALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             Cchhhcc-----cC----HHHHHHHHHhcCCcccccchhHHHHHH
Confidence            1222221     12    235566778888999999555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=1.5e-25  Score=227.76  Aligned_cols=249  Identities=26%  Similarity=0.398  Sum_probs=226.2

Q ss_pred             ccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCC
Q 004232          110 FVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL  189 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  189 (766)
                      +.+.+.+|..|.+|++++|+++ .+|++++.+..++.|+.|+|+++ .+|+.++.+.+|..|+.++|.+. .+|+.++.+
T Consensus        60 l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~  136 (565)
T KOG0472|consen   60 LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRL  136 (565)
T ss_pred             ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence            4467889999999999999985 67888999999999999999997 78999999999999999999998 678889999


Q ss_pred             CCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCcEEEccC
Q 004232          190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP--RGLVMAFLSN  267 (766)
Q Consensus       190 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~--~~l~~l~ls~  267 (766)
                      ..|+.|+..+|+++ ..|+.++++.+|..|++.+|++...+|..-+++.|+.||..+|-++..+|.+.  ..|..++|..
T Consensus       137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence            99999999999998 68888999999999999999999988887679999999999999987777653  5788899999


Q ss_pred             CcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCC
Q 004232          268 NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP  347 (766)
Q Consensus       268 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p  347 (766)
                      |++. .+| +|+.++.|.+|.++.|++.-++.....++++|..|||..|++. +.|+.++.+.+|.+||+|+|.++ .+|
T Consensus       216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp  291 (565)
T KOG0472|consen  216 NKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLP  291 (565)
T ss_pred             cccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCC
Confidence            9998 577 8999999999999999999888877779999999999999998 89999999999999999999999 688


Q ss_pred             CCCCCCCCCceeecCCCcCC
Q 004232          348 SCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       348 ~~~~~~~~l~~l~l~~N~l~  367 (766)
                      .+++++ .++.+.+.||++.
T Consensus       292 ~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cccccc-eeeehhhcCCchH
Confidence            899999 8999999999764

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.87  E-value=2.3e-22  Score=199.95  Aligned_cols=248  Identities=19%  Similarity=0.217  Sum_probs=166.3

Q ss_pred             CCceecCCceeEEEEE-ecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      ...+|.|.- .|..+- .-.++.||+|++...  .....++..+|..+|..+.|+||++++.++......  ......|+
T Consensus        22 L~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l--~~~~e~y~   98 (369)
T KOG0665|consen   22 LKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTL--EEFQEVYL   98 (369)
T ss_pred             ecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccH--HHHHhHHH
Confidence            445677765 444443 224789999988543  233456778899999999999999999988754311  11246899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      |||||.. +|.+.++..     ++-.....+..|+..|++|||+.   +|+||||||+||++..+..+||.|||+|+...
T Consensus        99 v~e~m~~-nl~~vi~~e-----lDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~  169 (369)
T KOG0665|consen   99 VMELMDA-NLCQVILME-----LDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLARTED  169 (369)
T ss_pred             HHHhhhh-HHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhcccC
Confidence            9999986 888877632     56677788999999999999998   89999999999999999999999999996543


Q ss_pred             cc-ccc------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---------------
Q 004232          645 DI-NSV------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---------------  702 (766)
Q Consensus       645 ~~-~~~------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---------------  702 (766)
                      .. ...      -+..++..-...+...+||||.||++.||++|..-|...  ...+.|..+...               
T Consensus       170 ~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~--d~idQ~~ki~~~lgtpd~~F~~qL~~~  247 (369)
T KOG0665|consen  170 TDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK--DHIDQWNKIIEQLGTPDPSFMKQLQPT  247 (369)
T ss_pred             cccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc--hHHHHHHHHHHHhcCCCHHHHHHhhHH
Confidence            22 000      011122222234667889999999999999998776632  111111111100               


Q ss_pred             --------cC-----c-cccccccccC--CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 --------EG-----R-QRLVDPVVMA--TSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 --------~~-----~-~~~~d~~~~~--~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                              +.     . ..+.|-....  +.+.-....+-+++.+.+..+|++|-|.+++++.
T Consensus       248 ~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  248 VRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             HHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence                    00     0 0011111111  0111123346788999999999999999998764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-22  Score=213.42  Aligned_cols=189  Identities=19%  Similarity=0.287  Sum_probs=147.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhH-----HHHHHHHHHHHhCC---CCCcccccceeec
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTV-----RNLKLRLDLLAKLR---HPHLVCLLGHCID  550 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~-----~~~~~e~~~l~~l~---Hpniv~l~g~~~~  550 (766)
                      .+|.....+|+|+||.|+.|..+ +...|.||.+.+.+.   ...     -.+-.||+||+.++   |+||++++.+|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            45778889999999999999864 467799999876542   111     12557999999997   9999999999998


Q ss_pred             CCCCCCcCcceEEEEEEc-cCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          551 GGGRDDYAVNKVFLVYEF-MSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey-~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      .+        .+||+||- -++-+|++++.-+.   .++..+...|+.||+.|+++||+.   +|||||||-+||.+|.+
T Consensus       641 dd--------~yyl~te~hg~gIDLFd~IE~kp---~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~  706 (772)
T KOG1152|consen  641 DD--------YYYLETEVHGEGIDLFDFIEFKP---RMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSN  706 (772)
T ss_pred             CC--------eeEEEecCCCCCcchhhhhhccC---ccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecC
Confidence            74        78999996 45678999986543   378889999999999999999997   99999999999999999


Q ss_pred             CcEEEecCCCCccccccc------ccccCCCCCCcc-cCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          630 RIAKLSDYGLSIVSEDIN------SVGGKQEDPNSW-EMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~------~~~~~~~~~~~~-~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      |-+|+.|||-|.......      +..+..++.... .+...+-|||++|++||-++...-|+
T Consensus       707 g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpy  769 (772)
T KOG1152|consen  707 GFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPY  769 (772)
T ss_pred             CeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCC
Confidence            999999999986654321      111111221111 22334569999999999998887776

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.87  E-value=6.7e-22  Score=206.97  Aligned_cols=192  Identities=22%  Similarity=0.287  Sum_probs=152.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC------CCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR------HPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~------Hpniv~l~g~~~~~~~~~  555 (766)
                      ..|.+....|+|-|++|.+|.. ..|..||||++...... .+.=.+|+++|++|+      --|.++|+-.|...    
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hk----  506 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHK----  506 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhc----
Confidence            4577788889999999999984 45889999999765433 344567999999985      24789988777664    


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEE
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKL  634 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~kl  634 (766)
                          +++|||+|-+.- +|++.|.+-+....|.......++.|+..||.+|-.+   +|+|.||||.|||+++. ...||
T Consensus       507 ----nHLClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKL  578 (752)
T KOG0670|consen  507 ----NHLCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKL  578 (752)
T ss_pred             ----ceeEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeee
Confidence                489999997765 8999998876555677788889999999999999987   89999999999999965 57999


Q ss_pred             ecCCCCccccccccc------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          635 SDYGLSIVSEDINSV------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       635 ~DFGla~~~~~~~~~------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ||||-|....+..-.      .+..++..-..++.+..|+||.||.|||+.||+..|+.
T Consensus       579 CDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG  637 (752)
T KOG0670|consen  579 CDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPG  637 (752)
T ss_pred             ccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCC
Confidence            999998765443211      22233333445677788999999999999999988864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=9.6e-24  Score=214.72  Aligned_cols=251  Identities=31%  Similarity=0.424  Sum_probs=200.4

Q ss_pred             cccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCccc-C
Q 004232          109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF-D  187 (766)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~  187 (766)
                      .+|+..-+++.|+.||...|-+ +.+|+.++.+.+|+.|+|.+|.+. .+| +|.++..|++|+++.|++. .+|.+. .
T Consensus       174 ~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~  249 (565)
T KOG0472|consen  174 ALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLK  249 (565)
T ss_pred             hCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence            3455555588888888877766 678888999999999999999986 566 8999999999999999887 566555 4


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCC----------------
Q 004232          188 SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS----------------  251 (766)
Q Consensus       188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~----------------  251 (766)
                      +|++|.+|||++|+++ ..|+++..+.+|.+||+|+|.+++.++.++++ .|+.|.+.+|.+..                
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy  327 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY  327 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence            9999999999999998 79999999999999999999999999999999 99999999997621                


Q ss_pred             --------------------------CCCCC-------------------C---------CCCcEEEccCCcC-------
Q 004232          252 --------------------------NLPKL-------------------P---------RGLVMAFLSNNSF-------  270 (766)
Q Consensus       252 --------------------------~~p~~-------------------~---------~~l~~l~ls~N~l-------  270 (766)
                                                .+|..                   |         ...+..+++.|++       
T Consensus       328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence                                      00100                   0         0022334444433       


Q ss_pred             ----------------ccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc---------------
Q 004232          271 ----------------SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS---------------  319 (766)
Q Consensus       271 ----------------~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---------------  319 (766)
                                      .+.+|..++.+++|+.|+|++|.+..+|. .++.+..|+.||++.|+|.               
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl  486 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETL  486 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccchHHHhhHHHHHHH
Confidence                            23567777888999999999998887664 6778888999999999885               


Q ss_pred             -------ccCCcc-CCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          320 -------GSLPKN-LNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       320 -------g~~p~~-~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                             +.++.+ +..+.+|..|||.+|.+. .+|..++++++++.+.+.||+|.
T Consensus       487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                   233333 667788999999999998 78889999999999999999887

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=2e-22  Score=195.13  Aligned_cols=239  Identities=19%  Similarity=0.355  Sum_probs=170.0

Q ss_pred             cCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEE
Q 004232          487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      +.-+|.+...|..|+|+|.. .-+++|+++...  ....++|..|.-.|+-+.||||..++|.|..+.        .+.+
T Consensus       194 l~tkl~e~hsgelwrgrwqg-ndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnspp--------nlv~  264 (448)
T KOG0195|consen  194 LITKLAESHSGELWRGRWQG-NDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPP--------NLVI  264 (448)
T ss_pred             hhhhhccCCCcccccccccC-cchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCC--------CceE
Confidence            34467788889999999974 445567765432  333578999998999999999999999998863        6899


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe--cCCCCcc
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS--DYGLSIV  642 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~--DFGla~~  642 (766)
                      +..|||.|+|+..|++.. .-.++-.+..+++.+||+|++|||+-. |-|..--|.+..|++|++.++||+  |--++. 
T Consensus       265 isq~mp~gslynvlhe~t-~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsf-  341 (448)
T KOG0195|consen  265 ISQYMPFGSLYNVLHEQT-SVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSF-  341 (448)
T ss_pred             eeeeccchHHHHHHhcCc-cEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeee-
Confidence            999999999999998764 345778889999999999999999853 344445689999999999998875  221111 


Q ss_pred             cccccccccCCCCCCcccCCC-----------CCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          643 SEDINSVGGKQEDPNSWEMTK-----------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~-----------~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                       .+..    + .+...|..++           ..+|+|||.+++||+.|...||......  +.-..+..++-+.. +.|
T Consensus       342 -qe~g----r-~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspm--ecgmkialeglrv~-ipp  412 (448)
T KOG0195|consen  342 -QEVG----R-AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPM--ECGMKIALEGLRVH-IPP  412 (448)
T ss_pred             -eccc----c-ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCch--hhhhhhhhcccccc-CCC
Confidence             0100    0 0111222211           2579999999999999999999743321  11112222221111 222


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .+        ...+.+|+.-|+..||.+||.|+.|+-.|+++.
T Consensus       413 gi--------s~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  413 GI--------SRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             Cc--------cHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            21        123778899999999999999999999998763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=4.1e-22  Score=239.29  Aligned_cols=194  Identities=19%  Similarity=0.281  Sum_probs=127.5

Q ss_pred             hCCC-CCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004232          535 KLRH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPG  613 (766)
Q Consensus       535 ~l~H-pniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  613 (766)
                      .++| +||++++++|.... .+......++.++||+ .++|++++...  ...+++.+...++.||++||+|||+.   +
T Consensus        28 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---g  100 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGN-LDGLDDDSIVRALECE-DVSLRQWLDNP--DRSVDAFECFHVFRQIVEIVNAAHSQ---G  100 (793)
T ss_pred             hhhHHHHHHHhhcccCCcc-ccccccchhhhhhccC-CccHHHHHhcc--cccccHHHHHHHHHHHHHHHHHHHhC---C
Confidence            4556 68889999874332 1112224578889987 55999999743  24588999999999999999999987   8


Q ss_pred             cccCCCCCCceEEcC-------------------CCcEEEecCCCCccccccc--------cc-------------c---
Q 004232          614 FFNNRVKTNNILLNE-------------------HRIAKLSDYGLSIVSEDIN--------SV-------------G---  650 (766)
Q Consensus       614 ivHrdlk~~NILld~-------------------~~~~kl~DFGla~~~~~~~--------~~-------------~---  650 (766)
                      |+||||||+||||+.                   ++.+|++|||+++......        ..             +   
T Consensus       101 IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (793)
T PLN00181        101 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSW  180 (793)
T ss_pred             eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcc
Confidence            999999999999954                   4567777777775321100        00             0   


Q ss_pred             cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHH
Q 004232          651 GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIAN  730 (766)
Q Consensus       651 ~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~  730 (766)
                      +..++......++.++|||||||+||||++|..|+.....    ....+..     ....+...     ........++.
T Consensus       181 Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~----~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~  246 (793)
T PLN00181        181 YTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR----TMSSLRH-----RVLPPQIL-----LNWPKEASFCL  246 (793)
T ss_pred             eEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH----HHHHHHH-----hhcChhhh-----hcCHHHHHHHH
Confidence            0111111123456789999999999999999877642111    1111110     01111111     11223457788


Q ss_pred             HhccCCCCCCCCHHHHHHH
Q 004232          731 KCICSESWSRPSFEDILWN  749 (766)
Q Consensus       731 ~C~~~~p~~RPs~~ev~~~  749 (766)
                      +||+.+|.+||+|.||++.
T Consensus       247 ~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        247 WLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HhCCCChhhCcChHHHhhc
Confidence            9999999999999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=5.2e-21  Score=220.44  Aligned_cols=229  Identities=28%  Similarity=0.383  Sum_probs=153.6

Q ss_pred             CcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccC
Q 004232          108 DSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD  187 (766)
Q Consensus       108 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  187 (766)
                      ..+|..+.  .+|+.|++.+|+++. +|.   .+++|++|+|++|+|+. +|..   ..+|+.|+|++|.++. +|..+ 
T Consensus       214 tsLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp-  281 (788)
T PRK15387        214 TTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH-LPALP-  281 (788)
T ss_pred             CcCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh-hhhch-
Confidence            45676665  378888888888864 554   25778888888888873 5543   2456666666666552 33321 


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCC-------------------CCCCCCCCCCCEEECCCCC
Q 004232          188 SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGS-------------------LPDLSSLGSLNVLNLSDNK  248 (766)
Q Consensus       188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-------------------~p~~~~l~~L~~L~ls~N~  248 (766)
                        ++|+.|+|++|+++. +|..   +++|+.|+|++|++++.                   +|.+  ..+|++|+|++|+
T Consensus       282 --~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~  353 (788)
T PRK15387        282 --SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQ  353 (788)
T ss_pred             --hhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc--ccccceEecCCCc
Confidence              334445555555542 3321   23455555555555432                   2221  1367788888888


Q ss_pred             CCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCC
Q 004232          249 LDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC  328 (766)
Q Consensus       249 l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~  328 (766)
                      |++ +|..+.++..|++++|++++ +|..   ..+|+.|++++|+|+++|+ .   .++|+.|++++|+|++ +|...  
T Consensus       354 Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~Lss-IP~l~--  421 (788)
T PRK15387        354 LAS-LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTS-LPMLP--  421 (788)
T ss_pred             cCC-CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCC-CCcch--
Confidence            875 55666777778888888874 5643   3578889999999987654 2   3678899999999984 67543  


Q ss_pred             CCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCCc
Q 004232          329 GGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV  370 (766)
Q Consensus       329 ~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~~  370 (766)
                       ..|+.|++++|+|+ .+|.++.+++++..+++++|++++..
T Consensus       422 -~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        422 -SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             -hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence             46788999999998 78988999999999999999998643

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.2e-20  Score=196.97  Aligned_cols=137  Identities=21%  Similarity=0.332  Sum_probs=111.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-----C---CCcccccceeecCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-----H---PHLVCLLGHCIDGGG  553 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-----H---pniv~l~g~~~~~~~  553 (766)
                      ..|.+.++||-|.|.+||.+.. ...+.||+|+.+.... ..+....||++|++++     |   .+||+|+++|...+.
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqh-YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQH-YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhH-HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            5688889999999999999973 4578999999876543 3456677999999883     3   369999999988653


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE  628 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~  628 (766)
                      .    ..++|||+|++-. +|..+|.... .+.+.......|+.||..||.|||..|  +|||-||||+|||+..
T Consensus       157 N----G~HVCMVfEvLGd-nLLklI~~s~-YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~  223 (590)
T KOG1290|consen  157 N----GQHVCMVFEVLGD-NLLKLIKYSN-YRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCS  223 (590)
T ss_pred             C----CcEEEEEehhhhh-HHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeec
Confidence            2    2579999999865 7777776543 345788889999999999999999987  8999999999999954

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=9.9e-21  Score=202.49  Aligned_cols=141  Identities=21%  Similarity=0.207  Sum_probs=112.5

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec--CCceEEEEEccCC-----hhhhHHHHHHHHHHHHhCCCCCcccccceeecCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE--NGTSVAIRCLPSS-----KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~--~g~~vAvK~l~~~-----~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      ...++|.+.+.||+|+||+||+|+..  +++.||||++...     .....+.+.+|+++|++++|+|+|..+..+    
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----   90 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----   90 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----
Confidence            34577999999999999999999864  5788899986532     223456799999999999999999633211    


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC-CCCceEEcCCCc
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-KTNNILLNEHRI  631 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl-k~~NILld~~~~  631 (766)
                             ...++||||+++++|... ...      .   ...++.++++||+|||+.   +|+|||| ||+|||++.++.
T Consensus        91 -------~~~~LVmE~~~G~~L~~~-~~~------~---~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~  150 (365)
T PRK09188         91 -------GKDGLVRGWTEGVPLHLA-RPH------G---DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGE  150 (365)
T ss_pred             -------CCcEEEEEccCCCCHHHh-Ccc------c---hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCC
Confidence                   146999999999999732 111      0   135678899999999997   8999999 999999999999


Q ss_pred             EEEecCCCCcccc
Q 004232          632 AKLSDYGLSIVSE  644 (766)
Q Consensus       632 ~kl~DFGla~~~~  644 (766)
                      +||+|||+|+...
T Consensus       151 ikLiDFGlA~~~~  163 (365)
T PRK09188        151 AAVIDFQLASVFR  163 (365)
T ss_pred             EEEEECccceecc
Confidence            9999999997543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=6.8e-20  Score=211.22  Aligned_cols=209  Identities=28%  Similarity=0.333  Sum_probs=146.6

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCC-----------------CCCCCCEEEccCCcCC
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS-----------------TMVKLQTLILDDNFFN  179 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~-----------------~l~~L~~L~L~~N~l~  179 (766)
                      +++|++|+|++|+|+. +|..   .++|+.|+|++|.++ .+|..+.                 .+++|+.|+|++|+++
T Consensus       241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA  315 (788)
T ss_pred             CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCCccccccccccccceeECCCCccc
Confidence            3566777777776653 3432   234445555554443 2222110                 1245666666666665


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRG  259 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~  259 (766)
                      + +|...   .+|+.|++++|+|++ +|..   ..+|+.|+|++|+|++. |.+  ..+|+.|++++|+|++ +|..+.+
T Consensus       316 ~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L-P~l--p~~L~~L~Ls~N~L~~-LP~l~~~  383 (788)
T PRK15387        316 S-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL-PTL--PSELYKLWAYNNRLTS-LPALPSG  383 (788)
T ss_pred             c-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCCC-CCC--Ccccceehhhcccccc-Ccccccc
Confidence            4 33321   245556666666653 4431   24799999999999964 443  3578889999999985 7778888


Q ss_pred             CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          260 LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      |..|++++|+|++ +|..   .++|+.|++++|+|+++|. .   ..+|+.|+|++|+|+ .+|..+..+.+|+.|+|++
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            9999999999995 6654   3689999999999998653 2   357899999999998 7899999999999999999


Q ss_pred             CccccCCCCCCC
Q 004232          340 NKLTGGLPSCLS  351 (766)
Q Consensus       340 N~l~g~~p~~~~  351 (766)
                      |+|++..|..+.
T Consensus       455 N~Ls~~~~~~L~  466 (788)
T PRK15387        455 NPLSERTLQALR  466 (788)
T ss_pred             CCCCchHHHHHH
Confidence            999998877653

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.82  E-value=6.2e-20  Score=180.65  Aligned_cols=139  Identities=16%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhh--h------------------------HHHHHHHHHHHHhCCCCCc
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY--T------------------------VRNLKLRLDLLAKLRHPHL  541 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--~------------------------~~~~~~e~~~l~~l~Hpni  541 (766)
                      ...||+|+||.||+|...+|+.||||+++.....  .                        .....+|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4679999999999999878999999999654211  0                        1122459999999988877


Q ss_pred             ccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCcccCCCC
Q 004232          542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL-HTGVIPGFFNNRVK  620 (766)
Q Consensus       542 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrdlk  620 (766)
                      .....+...          ..++||||++++++.....+.   ..++......++.+++.+|.|+ |+.   +|+|||||
T Consensus        82 ~~p~~~~~~----------~~~iVmE~i~g~~l~~~~~~~---~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlk  145 (190)
T cd05147          82 PCPEPILLK----------SHVLVMEFIGDDGWAAPRLKD---APLSESKARELYLQVIQIMRILYQDC---RLVHADLS  145 (190)
T ss_pred             CCCcEEEec----------CCEEEEEEeCCCCCcchhhhc---CCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCC
Confidence            443322211          238999999998876543222   2478888899999999999999 565   89999999


Q ss_pred             CCceEEcCCCcEEEecCCCCccc
Q 004232          621 TNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       621 ~~NILld~~~~~kl~DFGla~~~  643 (766)
                      |+||+++ ++.++++|||+|...
T Consensus       146 P~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         146 EYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHEEEE-CCcEEEEEccccccC
Confidence            9999998 478999999998643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.81  E-value=8.7e-20  Score=178.08  Aligned_cols=164  Identities=20%  Similarity=0.161  Sum_probs=112.1

Q ss_pred             CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccccc
Q 004232          572 GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG  651 (766)
Q Consensus       572 GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~  651 (766)
                      |+|.++++...  ..++|.++..++.|++.||+|||+.   +      ||+||+++.++.+|+  ||++.........++
T Consensus         1 GsL~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~~~g~   67 (176)
T smart00750        1 VSLADILEVRG--RPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQSRVD   67 (176)
T ss_pred             CcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeeccccCCCc
Confidence            78999997542  3589999999999999999999986   2      999999999999999  999876543322221


Q ss_pred             ---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHH---HHH
Q 004232          652 ---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESL---SIV  725 (766)
Q Consensus       652 ---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~  725 (766)
                         ..++......++.++|||||||++|||+||+.|+...... ......+....  .. .++..  .......   ..+
T Consensus        68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~-~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~~~  141 (176)
T smart00750       68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEEREL-SAILEILLNGM--PA-DDPRD--RSNLESVSAARSF  141 (176)
T ss_pred             ccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchh-cHHHHHHHHHh--cc-CCccc--cccHHHHHhhhhH
Confidence               1122122234567899999999999999999998643211 11111111100  00 00100  0011111   248


Q ss_pred             HHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          726 ISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       726 ~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .+++.+||+.+|.+||++.|+++.+....
T Consensus       142 ~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      142 ADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence            89999999999999999999999987654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.81  E-value=7.3e-20  Score=189.05  Aligned_cols=145  Identities=23%  Similarity=0.390  Sum_probs=122.4

Q ss_pred             HHHHhcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCC
Q 004232          478 LKEATNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGG  552 (766)
Q Consensus       478 l~~~~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~  552 (766)
                      +....+.|...++||+|.|++||++...    ....||+|.+.....  ..++..|+++|..+. |.||+++.+++...+
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            4444567888999999999999999742    467899999865432  356889999999995 899999998776553


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-Cc
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RI  631 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~  631 (766)
                              ...+|+||++.-+.+++...      ++..+...+...+..||+|+|+.   +|||||+||+|+|-+.. +.
T Consensus       109 --------~v~ivlp~~~H~~f~~l~~~------l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~r  171 (418)
T KOG1167|consen  109 --------QVAIVLPYFEHDRFRDLYRS------LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQR  171 (418)
T ss_pred             --------eeEEEecccCccCHHHHHhc------CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCC
Confidence                    78999999999999998764      56788888999999999999998   99999999999999854 56


Q ss_pred             EEEecCCCCc
Q 004232          632 AKLSDYGLSI  641 (766)
Q Consensus       632 ~kl~DFGla~  641 (766)
                      -.|.|||+|.
T Consensus       172 g~LvDFgLA~  181 (418)
T KOG1167|consen  172 GVLVDFGLAQ  181 (418)
T ss_pred             ceEEechhHH
Confidence            7899999986

>PLN03210 Resistant to P

Probab=99.81  E-value=8.6e-19  Score=217.14  Aligned_cols=250  Identities=22%  Similarity=0.304  Sum_probs=164.3

Q ss_pred             CCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCccc
Q 004232          107 IDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF  186 (766)
Q Consensus       107 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  186 (766)
                      ...+|..+ .+.+|+.|+|.+|.+. .+|..+..+++|++|+|++|...+.+| .+..+++|++|+|++|.....+|..+
T Consensus       601 l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        601 LRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             CCCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhh
Confidence            34455554 4566777777777663 456666677777777777665444555 36667777777777766666677777


Q ss_pred             CCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-----------
Q 004232          187 DSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-----------  255 (766)
Q Consensus       187 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-----------  255 (766)
                      +++++|+.|++++|...+.+|..+ ++++|+.|+|++|...+.+|.+  .++|++|++++|.+...++.           
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l  754 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLRLENLDELIL  754 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccccccccccccccccc
Confidence            777777777777765445566554 5666777777666544444432  24556666666654321110           


Q ss_pred             ---------------------CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEee
Q 004232          256 ---------------------LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA  314 (766)
Q Consensus       256 ---------------------~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~  314 (766)
                                           .+.+|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|+.|+|+
T Consensus       755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls  833 (1153)
T PLN03210        755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS  833 (1153)
T ss_pred             cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence                                 12356777888887777788888888888888888765434444443 67888888888


Q ss_pred             cCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCC-CcCC
Q 004232          315 SNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG-NCLS  367 (766)
Q Consensus       315 ~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~-N~l~  367 (766)
                      +|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|++.+ |.+.
T Consensus       834 ~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        834 GCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             CCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence            87665556643   356888888888887 6788888888888888887 4444

syringae 6; Provisional

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=5.8e-19  Score=174.39  Aligned_cols=138  Identities=16%  Similarity=0.202  Sum_probs=108.8

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhh--------------------------hHHHHHHHHHHHHhCCCCCc
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY--------------------------TVRNLKLRLDLLAKLRHPHL  541 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--------------------------~~~~~~~e~~~l~~l~Hpni  541 (766)
                      ...||+|+||.||+|+..+|+.||||.++.....                          ....+++|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4679999999999999778999999998754210                          01234678999999999988


Q ss_pred             ccccceeecCCCCCCcCcceEEEEEEccCCCChhhh-hhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCC
Q 004232          542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH-ISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRV  619 (766)
Q Consensus       542 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrdl  619 (766)
                      .....+...          ..++||||++++++... +.+    ..++......++.+++.++.|+|+ .   +|+||||
T Consensus        82 ~~p~~~~~~----------~~~lVmE~~~g~~~~~~~l~~----~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDl  144 (190)
T cd05145          82 PVPEPILLK----------KNVLVMEFIGDDGSPAPRLKD----VPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDL  144 (190)
T ss_pred             CCceEEEec----------CCEEEEEEecCCCchhhhhhh----ccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCC
Confidence            554443322          23899999999865443 332    236677888999999999999999 6   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCccc
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~  643 (766)
                      ||+||+++ ++.++|+|||++...
T Consensus       145 kP~NIll~-~~~~~liDFG~a~~~  167 (190)
T cd05145         145 SEYNILYH-DGKPYIIDVSQAVEL  167 (190)
T ss_pred             ChhhEEEE-CCCEEEEEcccceec
Confidence            99999999 789999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-19  Score=194.40  Aligned_cols=208  Identities=20%  Similarity=0.317  Sum_probs=149.7

Q ss_pred             HHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 004232          533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIP  612 (766)
Q Consensus       533 l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  612 (766)
                      |+.+.|.|+.+++|.|.++.        ..+.|.+||+.|+|.+.+....  ..++|..+..++.+|+.||+|+|...  
T Consensus         1 l~~l~h~n~~~f~g~~~~~~--------~~~~i~~~c~rGsl~D~i~~~~--~~~d~~F~~s~~rdi~~Gl~ylh~s~--   68 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGP--------EMIVIWEYCSRGSLLDILSNED--IKLDYFFILSFIRDISKGLAYLHNSP--   68 (484)
T ss_pred             CcccchhhhhhheeeEecCC--------ceEEEEeeecCccHHhHHhccc--cCccHHHHHHHHHHHHHHHHHHhcCc--
Confidence            45689999999999999873        6899999999999999997643  45899999999999999999999873  


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecCCCCcccccccccc----------cCCCCCCcc-------cCCCCCCCEeehhHHH
Q 004232          613 GFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG----------GKQEDPNSW-------EMTKLEDDVFSFGFML  675 (766)
Q Consensus       613 ~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~----------~~~~~~~~~-------~~~~~~~DV~SfGvil  675 (766)
                      ...|+.++++|+++|..+.+|++|||+.....+.....          ...++....       ...+.++||||||+++
T Consensus        69 i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~  148 (484)
T KOG1023|consen   69 IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIM  148 (484)
T ss_pred             ceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHH
Confidence            33999999999999999999999999986553210000          001110000       1245578999999999


Q ss_pred             HHHhcCCCccccCccchH-HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          676 LESVAGPSVAARKGQFLQ-EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       676 ~ElltG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      +|+++.+.||+....... .++...... .....+.|.+....  +....+..++.+||..+|.+||++++|-..+..+.
T Consensus       149 ~ei~~r~~~~~~~~~~~~~~eii~~~~~-~~~~~~rP~i~~~~--e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~  225 (484)
T KOG1023|consen  149 YEILFRSGPFDLRNLVEDPDEIILRVKK-GGSNPFRPSIELLN--ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTIN  225 (484)
T ss_pred             HHHHhccCccccccccCChHHHHHHHHh-cCCCCcCcchhhhh--hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhc
Confidence            999999999985432211 121111111 12222333322111  22235888999999999999999999998888765


Q ss_pred             h
Q 004232          755 Q  755 (766)
Q Consensus       755 ~  755 (766)
                      .
T Consensus       226 ~  226 (484)
T KOG1023|consen  226 K  226 (484)
T ss_pred             c
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.1e-19  Score=207.23  Aligned_cols=226  Identities=26%  Similarity=0.391  Sum_probs=183.3

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|+.|+|++|.++ .+|..+.  .+|++|+|++|+|+ .+|..+.  .+|+.|+|++|.+. .+|..+.  ++|+.|+|
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            46899999999997 5676554  58999999999997 5676664  47999999999998 6777664  58999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCccc
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQ  277 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~  277 (766)
                      ++|+|+ .+|..+.  ++|+.|+|++|+|++.++.+.  ++|+.|++++|+++...+.++.+|+.|++++|.+++ +|..
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~  343 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPAS  343 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCcccc-CChh
Confidence            999998 5787664  589999999999997544343  478999999999987655577889999999999986 6766


Q ss_pred             ccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCC----CCC
Q 004232          278 YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCL----SNE  353 (766)
Q Consensus       278 ~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~----~~~  353 (766)
                      +.  ++|+.|++++|+|+.+|. .+  .++|+.|+|++|+|+ .+|..+.  ..|+.|++++|+|+ .+|..+    +..
T Consensus       344 l~--~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        344 LP--PELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             hc--CcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence            53  799999999999987553 44  368999999999999 5676654  36999999999998 556543    445


Q ss_pred             CCCceeecCCCcCC
Q 004232          354 SDKRVVKFRGNCLS  367 (766)
Q Consensus       354 ~~l~~l~l~~N~l~  367 (766)
                      +.+..+++.+|.++
T Consensus       415 ~~l~~L~L~~Npls  428 (754)
T PRK15370        415 PQPTRIIVEYNPFS  428 (754)
T ss_pred             CCccEEEeeCCCcc
Confidence            77889999999886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-21  Score=199.59  Aligned_cols=258  Identities=22%  Similarity=0.257  Sum_probs=149.7

Q ss_pred             ccccCCCCCCEEecccccccccCCccccCCCCCCEEeccc-ccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCC
Q 004232          112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSS-NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLP  190 (766)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  190 (766)
                      .+|+.+++|+.|||++|+|+.+-|++|.+|.+|..|-+.+ |+|+...-..|++|..|+.|.+.-|++.-...+.|..|+
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            3455555555555555555555555555555544443333 444433334445555555555555555544444555555


Q ss_pred             CCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCC--CCC-----------CCCCCCCCCEEECCCCCCCCCCCC-C
Q 004232          191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG--SLP-----------DLSSLGSLNVLNLSDNKLDSNLPK-L  256 (766)
Q Consensus       191 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p-----------~~~~l~~L~~L~ls~N~l~~~~p~-~  256 (766)
                      +|..|.+.+|.+...--..|..+..++.+.+..|.+--  .+|           .+++.....-..+.++++...-+. .
T Consensus       165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf  244 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF  244 (498)
T ss_pred             hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence            55555555555442222244445555555554444210  000           011111111111111111110000 0


Q ss_pred             C---CCCcEEEccCCcCccCCc-ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCc
Q 004232          257 P---RGLVMAFLSNNSFSGEIP-KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL  332 (766)
Q Consensus       257 ~---~~l~~l~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L  332 (766)
                      .   ..+..-..+.....+..| ..|..+++|+.|+|++|+++++-+.+|..+..++.|.|..|+|...-...|..++.|
T Consensus       245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL  324 (498)
T ss_pred             hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence            0   011111122222333333 468999999999999999999999999999999999999999986666788999999


Q ss_pred             cEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCC
Q 004232          333 VFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       333 ~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~  369 (766)
                      +.|+|.+|+|+..-|..|..+..+..+++-.|.+..+
T Consensus       325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             eeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            9999999999999999999999999999999987653

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.79  E-value=3.2e-19  Score=177.44  Aligned_cols=177  Identities=10%  Similarity=0.116  Sum_probs=127.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhH---HH------HHHHHHHHHhCCCCCcccccceeecCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV---RN------LKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~---~~------~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      .++|...+++|.|+||.||.... ++..+|||.+........   +.      +++|+..+.+++||+|.....++....
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            47799999999999999999765 567899999975432221   22      688999999999999999988866542


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                      ..........++||||++|.+|.++..       ++.    ....+++.++..+|+.   +++|||+||+||+++.++ +
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~----~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i  173 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPE-------ISE----DVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-L  173 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhh-------ccH----HHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-E
Confidence            110000124799999999999987632       221    2455889999999997   899999999999999888 9


Q ss_pred             EEecCCCCcccccccccccCCCCCCcccCCCCCCCEeehhHHHHHH
Q 004232          633 KLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLES  678 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~DV~SfGvil~El  678 (766)
                      ++.|||............    .......+..++|+||||+.+.-.
T Consensus       174 ~liDfg~~~~~~e~~a~d----~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        174 RIIDLSGKRCTAQRKAKD----RIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             EEEECCCcccccchhhHH----HHHHHhHhcccccccceeEeehHH
Confidence            999999875442211000    000011233689999999976553

>PLN03210 Resistant to P

Probab=99.78  E-value=3.9e-18  Score=211.33  Aligned_cols=249  Identities=22%  Similarity=0.272  Sum_probs=178.6

Q ss_pred             cccccccCCC-CCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccC
Q 004232          109 SFVTTLARLT-SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD  187 (766)
Q Consensus       109 ~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  187 (766)
                      .+|..+..++ +|+.|++.++.+ ..+|..| .+.+|+.|+|++|++. .+|..+..+++|+.|+|++|.....+|. ++
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls  654 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS  654 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cc
Confidence            3566666664 588888888876 5677777 5789999999999986 6888899999999999998876667775 88


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccC
Q 004232          188 SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSN  267 (766)
Q Consensus       188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~  267 (766)
                      .+++|+.|+|++|.....+|..+.++++|+.|++++|...+.+|...++++|+.|++++|...+.+|..+.++..|++++
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence            99999999999998778999999999999999999976666677655899999999999988888888888999999999


Q ss_pred             CcCccCCcccccCCCCCCEEEccCCc-------CCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCC
Q 004232          268 NSFSGEIPKQYGQLNQLQQLDMSFNA-------LRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN  340 (766)
Q Consensus       268 N~l~~~~p~~~~~l~~L~~L~ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N  340 (766)
                      |.+. .+|..+ .+++|+.|+++++.       +...++..+...++|+.|+|++|...+.+|..++.+++|+.|++++|
T Consensus       735 n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        735 TAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             Cccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            9986 466544 34555555554422       11112212222345555555555555555555555555555555554


Q ss_pred             ccccCCCCCCCCCCCCceeecCCC
Q 004232          341 KLTGGLPSCLSNESDKRVVKFRGN  364 (766)
Q Consensus       341 ~l~g~~p~~~~~~~~l~~l~l~~N  364 (766)
                      ...+.+|..+ ++++|+.|++++|
T Consensus       813 ~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        813 INLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             CCcCeeCCCC-CccccCEEECCCC
Confidence            3333444443 3445555555543

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=4.2e-21  Score=214.15  Aligned_cols=260  Identities=27%  Similarity=0.377  Sum_probs=172.4

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCE----------
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT----------  170 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~----------  170 (766)
                      ++.|+ +...|.+++++.+|++|+|.+|.+ ..+|..+..+.+|++||+|+|.+. .+|..+..++.+..          
T Consensus        75 ~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   75 LSRNY-IRSVPSSCSNMRNLQYLNLKNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             cchhh-HhhCchhhhhhhcchhheeccchh-hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence            34444 345678999999999999999887 578999999999999999999874 55544433332222          


Q ss_pred             -------------------------------EEccCCcCCCCCCccc---------------------------------
Q 004232          171 -------------------------------LILDDNFFNNTIPNWF---------------------------------  186 (766)
Q Consensus       171 -------------------------------L~L~~N~l~~~~p~~~---------------------------------  186 (766)
                                                     |+|.+|.+....-..+                                 
T Consensus       152 ~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l  231 (1081)
T KOG0618|consen  152 RLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPL  231 (1081)
T ss_pred             hhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcc
Confidence                                           4444443320000000                                 


Q ss_pred             ------CCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCC-----------------------CCCCCCCCC
Q 004232          187 ------DSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG-----------------------SLPDLSSLG  237 (766)
Q Consensus       187 ------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------------~~p~~~~l~  237 (766)
                            ..-.+|+++++++|+++ .+|++++.+.+|+.|++.+|+|+.                       .+|....++
T Consensus       232 ~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~  310 (1081)
T KOG0618|consen  232 TTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLK  310 (1081)
T ss_pred             eeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccc
Confidence                  00124666666666666 355777777777777777776642                       333355688


Q ss_pred             CCCEEECCCCCCCCCCCC---------------------CC-------CCCcEEEccCCcCccCCcccccCCCCCCEEEc
Q 004232          238 SLNVLNLSDNKLDSNLPK---------------------LP-------RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM  289 (766)
Q Consensus       238 ~L~~L~ls~N~l~~~~p~---------------------~~-------~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~l  289 (766)
                      +|++|+|..|+|...++.                     ++       ..|+.|++.+|.++...-..+.+..+|+.|+|
T Consensus       311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL  390 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL  390 (1081)
T ss_pred             eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence            999999999998653321                     11       13566788999998877777888899999999


Q ss_pred             cCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCC----------------------CCCccEEeCcCCccccCCC
Q 004232          290 SFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC----------------------GGKLVFFDISNNKLTGGLP  347 (766)
Q Consensus       290 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~----------------------~~~L~~L~ls~N~l~g~~p  347 (766)
                      ++|+|...|...+.++..|+.|+||+|+|+ .+|+.+..                      +++|+.+|+|.|+|+-..-
T Consensus       391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhh
Confidence            999999999888999999999999999987 45555444                      4555556666665542221


Q ss_pred             CCCCCCCCCceeecCCCc
Q 004232          348 SCLSNESDKRVVKFRGNC  365 (766)
Q Consensus       348 ~~~~~~~~l~~l~l~~N~  365 (766)
                      ......++|+.|+++||.
T Consensus       470 ~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  470 PEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhCCCcccceeeccCCc
Confidence            111122456666666654

>PRK10345 hypothetical protein; Provisional

Probab=99.76  E-value=5e-18  Score=168.63  Aligned_cols=140  Identities=16%  Similarity=0.171  Sum_probs=106.5

Q ss_pred             CcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-----CCCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-----RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-----~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .-...||+|+||.||. .-.++.. +||++........+.+.+|+++++++     +||||++++|++.+..|..    .
T Consensus         5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g----~   78 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG----Y   78 (210)
T ss_pred             CCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe----E
Confidence            3457899999999996 3234444 68888665444567899999999999     6799999999998864321    1


Q ss_pred             eEEEEEEc--cCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHH-HHHhcCCCCCcccCCCCCCceEEcC----CCcEE
Q 004232          561 KVFLVYEF--MSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV-QFLHTGVIPGFFNNRVKTNNILLNE----HRIAK  633 (766)
Q Consensus       561 ~~~lv~Ey--~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL-~yLH~~~~~~ivHrdlk~~NILld~----~~~~k  633 (766)
                      .+.+|+||  +++|+|.+++.+..    ++..  ..++.++..++ +|||++   +|+||||||+|||++.    ++.++
T Consensus        79 v~~~I~e~~G~~~~tL~~~l~~~~----~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~  149 (210)
T PRK10345         79 VYDVIADFDGKPSITLTEFAEQCR----YEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPV  149 (210)
T ss_pred             EEEEEecCCCCcchhHHHHHHccc----ccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEE
Confidence            24489999  66899999996531    4444  35577788777 999998   8999999999999974    34799


Q ss_pred             EecCCCC
Q 004232          634 LSDYGLS  640 (766)
Q Consensus       634 l~DFGla  640 (766)
                      |+||+-+
T Consensus       150 LiDg~G~  156 (210)
T PRK10345        150 VCDNIGE  156 (210)
T ss_pred             EEECCCC
Confidence            9995443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.74  E-value=8.2e-17  Score=172.13  Aligned_cols=250  Identities=24%  Similarity=0.370  Sum_probs=174.6

Q ss_pred             CCcCCceecCCceeEEEEEecCCceEEEEEccCChhh---hHHHHHHHHHHHHhCCCC-CcccccceeecCCCCCCcCcc
Q 004232          485 FDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY---TVRNLKLRLDLLAKLRHP-HLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~---~~~~~~~e~~~l~~l~Hp-niv~l~g~~~~~~~~~~~~~~  560 (766)
                      |.....||.|+||.||++...  ..+|+|.+......   ....+.+|+.+++.+.|+ +++++..++....        
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~--------   71 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEG--------   71 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC--------
Confidence            556678999999999999876  78899998765432   467899999999999988 7999999885442        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGl  639 (766)
                      ..++++||+.++++.+++........+.......+..+++.++.|+|..   +++|||+||+||+++... .+|++|||.
T Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~  148 (384)
T COG0515          72 SLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGL  148 (384)
T ss_pred             EEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCc
Confidence            4799999999999997665432112477888899999999999999997   799999999999999888 799999999


Q ss_pred             Ccccccccc-----------cccCC-CCCC--cc---cCCCCCCCEeehhHHHHHHhcCCCccccCccc--hHHHHhhhh
Q 004232          640 SIVSEDINS-----------VGGKQ-EDPN--SW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF--LQEELDSLN  700 (766)
Q Consensus       640 a~~~~~~~~-----------~~~~~-~~~~--~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~--~~~~~~~~~  700 (766)
                      +........           .+... ..|.  ..   .......|+||+|++++++++|..|+......  .......+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  228 (384)
T COG0515         149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIIL  228 (384)
T ss_pred             ceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHH
Confidence            864332211           00000 1111  11   24455779999999999999999996543320  111111111


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ... ..... ..............+.+++.+|+..+|..|.++.+....
T Consensus       229 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         229 ELP-TPSLA-SPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             hcC-Ccccc-cccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            111 00000 000000001112346788899999999999999887764

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.73  E-value=2.5e-17  Score=160.32  Aligned_cols=175  Identities=16%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             CcCCceecCCceeEEEEEecCCceEEEEEccCChh----hhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcc
Q 004232          486 DMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK----YTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+...|++|+||+||.+.. ++..++.+.+.....    ...+.+.+|+++|+++. |+++.+++++.            
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~------------   71 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD------------   71 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc------------
Confidence            3467899999999997765 677888777765432    12336889999999995 57888888751            


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC-CCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-KTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl-k~~NILld~~~~~kl~DFGl  639 (766)
                      ..+++|||+.+.+|.+.+..          ....++.++++++.|+|+.   +|+|||| ||+|||++.++.++|+|||+
T Consensus        72 ~~~lvmeyI~G~~L~~~~~~----------~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~  138 (218)
T PRK12274         72 GRHLDRSYLAGAAMYQRPPR----------GDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQL  138 (218)
T ss_pred             CEEEEEeeecCccHHhhhhh----------hhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCC
Confidence            35999999999998754321          1134677899999999998   8999999 79999999999999999999


Q ss_pred             Cccccccccc----c-------------cCCC--CCCcccCCC----CCCCEeehhHHHHHHhcCCCccc
Q 004232          640 SIVSEDINSV----G-------------GKQE--DPNSWEMTK----LEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       640 a~~~~~~~~~----~-------------~~~~--~~~~~~~~~----~~~DV~SfGvil~ElltG~~p~~  686 (766)
                      +.........    .             +.++  .|.......    ...++++-|.-+|.++|++.+..
T Consensus       139 A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        139 AVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             ceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcc
Confidence            9754322110    0             0011  111111111    12478899999999999987754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=6.9e-20  Score=166.37  Aligned_cols=162  Identities=33%  Similarity=0.506  Sum_probs=141.4

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .+.++++.+.|.|++|.++ .+|+.+..|.+|+.|++++|++. .+|.+++.|++|+.|+++-|++. .+|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3567778888999999996 56667999999999999999996 78999999999999999999988 789999999999


Q ss_pred             CEEEccCccCC-CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCc
Q 004232          193 TFLSMRNNKLA-GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS  271 (766)
Q Consensus       193 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~  271 (766)
                      ++|||.+|++. ..+|..|..|+.|+.|+|+.|.+.-.+|+.+.|++|+.|.+.+|.+-                     
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll---------------------  163 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL---------------------  163 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh---------------------
Confidence            99999999986 46899999999999999999999988888999999999888887653                     


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCc
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPP  299 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~  299 (766)
                       .+|.+++.+.+|++|.+.+|+++-+||
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceeeecCh
Confidence             478888888888888888888877666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=3.7e-19  Score=191.22  Aligned_cols=255  Identities=24%  Similarity=0.276  Sum_probs=169.8

Q ss_pred             cccccCCCCCCEEeccccccccc----CCccccCCCCCCEEecccccCcc------CCCccCCCCCCCCEEEccCCcCCC
Q 004232          111 VTTLARLTSLRVLSLVSLGIWGS----LPDKIHRLYSLEYLDLSSNFLFG------SVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       111 ~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      ...+..+.+|+.|+++++.++..    ++..+...++|++|++++|.+.+      .++..+..+++|+.|+|++|.+.+
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            44566777799999999988443    56667788889999999888762      234567778899999999998887


Q ss_pred             CCCcccCCCCC---CCEEEccCccCCC----CCCccccCC-CCCCEEEccCCccCCCCC-----CCCCCCCCCEEECCCC
Q 004232          181 TIPNWFDSLPS---LTFLSMRNNKLAG----PFPSSIQRI-STLSDLDLSKNAISGSLP-----DLSSLGSLNVLNLSDN  247 (766)
Q Consensus       181 ~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~ls~N  247 (766)
                      ..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|+|++|.+++...     .+..+++|++|++++|
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            66666665555   9999999998873    233445666 888999999998885322     2556778889999988


Q ss_pred             CCCCC----CCC-C--CCCCcEEEccCCcCccC----CcccccCCCCCCEEEccCCcCCCCCccccC-----CCCCCCeE
Q 004232          248 KLDSN----LPK-L--PRGLVMAFLSNNSFSGE----IPKQYGQLNQLQQLDMSFNALRGMPPPAIF-----SLPNISDL  311 (766)
Q Consensus       248 ~l~~~----~p~-~--~~~l~~l~ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~-----~l~~L~~L  311 (766)
                      .+++.    ++. +  ...|+.+++++|.+++.    ++..+..+++|+.|++++|.+++.....+.     ..+.|+.|
T Consensus       176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            88742    111 1  13677777777777643    334455667788888888777653222221     13677777


Q ss_pred             EeecCcCc----ccCCccCCCCCCccEEeCcCCccccC----CCCCCCCC-CCCceeecCCCc
Q 004232          312 NLASNKFS----GSLPKNLNCGGKLVFFDISNNKLTGG----LPSCLSNE-SDKRVVKFRGNC  365 (766)
Q Consensus       312 ~L~~N~l~----g~~p~~~~~~~~L~~L~ls~N~l~g~----~p~~~~~~-~~l~~l~l~~N~  365 (766)
                      ++++|.++    ..+...+....+|+++|+++|.++..    +...+... +.++.+++.+|.
T Consensus       256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            77777775    12333444456777777777777643    22222222 456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.70  E-value=5.5e-19  Score=197.39  Aligned_cols=259  Identities=28%  Similarity=0.372  Sum_probs=193.3

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      +..|++....-+...+.-+|+.|+|++|.+ +..|..+..+.+|+.|+++.|.+. .+|.++.++.+|++|+|.+|.+. 
T Consensus        28 ~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-  104 (1081)
T KOG0618|consen   28 LRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-  104 (1081)
T ss_pred             ccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-
Confidence            344444433223444455699999998887 678888999999999999999886 67888999999999999998877 


Q ss_pred             CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCC-------------------ccCCCCC-CCCCCCCCC
Q 004232          181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN-------------------AISGSLP-DLSSLGSLN  240 (766)
Q Consensus       181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-------------------~l~~~~p-~~~~l~~L~  240 (766)
                      .+|..+..+.+|++|+++.|++. .+|..+..++.+..+..++|                   .+.+.++ ++..++.  
T Consensus       105 ~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--  181 (1081)
T KOG0618|consen  105 SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--  181 (1081)
T ss_pred             cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--
Confidence            78888999999999999999886 67777777776666666666                   2222222 1333333  


Q ss_pred             EEECCCCCCCCC----CCCC----------------CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCcc
Q 004232          241 VLNLSDNKLDSN----LPKL----------------PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP  300 (766)
Q Consensus       241 ~L~ls~N~l~~~----~p~~----------------~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~  300 (766)
                      .|+|.+|.+.-.    .+.+                ...++.++.++|.++...+.  ..-.+|+++|+|+|++++.| .
T Consensus       182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~  258 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLP-E  258 (1081)
T ss_pred             eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcch-H
Confidence            588998887611    1110                12456666777777632221  22357899999999999988 8


Q ss_pred             ccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCCc
Q 004232          301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV  370 (766)
Q Consensus       301 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~~  370 (766)
                      +++.+.+|+.|+..+|+|+ .+|..+...++|+.|++.+|.+. -+|..+...+.+++|++..|.+...+
T Consensus       259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccc
Confidence            8999999999999999996 78888888889999999999988 67777888888999999999887544

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.69  E-value=7.3e-16  Score=165.44  Aligned_cols=251  Identities=20%  Similarity=0.255  Sum_probs=167.4

Q ss_pred             CCCcCCceecCCceeEEEEEecC--CceEEEEEccCChhhhHHHHHHHHHHHHhCCC----CCcccccceee-cCCCCCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLEN--GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH----PHLVCLLGHCI-DGGGRDD  556 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~H----pniv~l~g~~~-~~~~~~~  556 (766)
                      .|.+.+.||+|+||.||++....  ...+|+|.-..........+..|+.++..+.+    +++..+++... ..     
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~-----   93 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTE-----   93 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCC-----
Confidence            78899999999999999998554  34788887765433322367888999888873    47777766553 22     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-----Cc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-----RI  631 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-----~~  631 (766)
                         ..-++||+.+ +.+|.++..... ...++..+.++|+.|+..+|+++|+.   +++||||||.|+++...     ..
T Consensus        94 ---~~~~iVM~l~-G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~  165 (322)
T KOG1164|consen   94 ---DFNFIVMSLL-GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRT  165 (322)
T ss_pred             ---ceeEEEEecc-CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccce
Confidence               2568998865 558988665443 45588899999999999999999997   99999999999999854     46


Q ss_pred             EEEecCCCCccccccccccc--CCC---------CC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-h
Q 004232          632 AKLSDYGLSIVSEDINSVGG--KQE---------DP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-L  692 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~--~~~---------~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~  692 (766)
                      +.+.|||+++........+.  ..+         +.       ......+.+.|+||++-++.|+..|..|+...... .
T Consensus       166 ~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~  245 (322)
T KOG1164|consen  166 LYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDL  245 (322)
T ss_pred             EEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccch
Confidence            89999999973211000000  000         00       01122334679999999999999999887533221 1


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ...+......    ....+  .......+   +.++...+-..+-.++|....+...++.....
T Consensus       246 ~~~~~~~~~~----~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~  300 (322)
T KOG1164|consen  246 KSKFEKDPRK----LLTDR--FGDLKPEE---FAKILEYIDSLDYEDKPDYEKLAELLKDVFDS  300 (322)
T ss_pred             HHHHHHHhhh----hcccc--ccCCChHH---HHHHHHHhhccCCcCCCCHHHHHHHHHHHHHh
Confidence            1111111111    11111  11111222   44555555668999999999999998877654

>smart00090 RIO RIO-like kinase

Probab=99.69  E-value=1.3e-16  Score=162.52  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=108.0

Q ss_pred             CCCcCCceecCCceeEEEEE--ecCCceEEEEEccCChhh------------------------hHHHHHHHHHHHHhCC
Q 004232          484 NFDMSAIMGEGSYGKLYKGR--LENGTSVAIRCLPSSKKY------------------------TVRNLKLRLDLLAKLR  537 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~--~~~g~~vAvK~l~~~~~~------------------------~~~~~~~e~~~l~~l~  537 (766)
                      .|++.+.||+|+||.||+|.  ..+|+.||||.++.....                        ....+.+|+.++.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999998  568999999998643210                        1134678999999997


Q ss_pred             CCC--cccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC-c
Q 004232          538 HPH--LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPG-F  614 (766)
Q Consensus       538 Hpn--iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-i  614 (766)
                      |..  +.+++++   .         ..++||||++++++........   .........++.+++.+++|||+.   + |
T Consensus       109 ~~~i~~p~~~~~---~---------~~~lV~E~~~g~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---g~i  170 (237)
T smart00090      109 EAGVPVPKPIAW---R---------RNVLVMEFIGGDGLPAPRLKDV---EPEEEEEFELYDDILEEMRKLYKE---GEL  170 (237)
T ss_pred             hcCCCCCeeeEe---c---------CceEEEEEecCCcccccccccC---CcchHHHHHHHHHHHHHHHHHHhc---CCE
Confidence            633  2333322   1         2489999999999876543221   244555678899999999999997   7 9


Q ss_pred             ccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          615 FNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       615 vHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|||+||+||+++ ++.++++|||.+...
T Consensus       171 iH~Dikp~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      171 VHGDLSEYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             EeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence            9999999999999 889999999997543

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.69  E-value=2.2e-16  Score=157.16  Aligned_cols=143  Identities=13%  Similarity=0.149  Sum_probs=108.5

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChh----------------------hhHHHHHHHHHHHH
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK----------------------YTVRNLKLRLDLLA  534 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----------------------~~~~~~~~e~~~l~  534 (766)
                      ++...-..|.+.+.||+|+||.||+|...+|+.||||++.....                      .....+.+|..++.
T Consensus         9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   88 (198)
T cd05144           9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK   88 (198)
T ss_pred             HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence            34333334777899999999999999988899999998654220                      01123677888999


Q ss_pred             hCCCCC--cccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 004232          535 KLRHPH--LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIP  612 (766)
Q Consensus       535 ~l~Hpn--iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  612 (766)
                      ++.|++  +...++.            ...++||||+++++|......         .....++.+++.++.++|+.   
T Consensus        89 ~l~~~~i~v~~~~~~------------~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~~---  144 (198)
T cd05144          89 ALYEEGFPVPKPIDW------------NRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYKH---  144 (198)
T ss_pred             HHHHcCCCCCceeec------------CCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHHC---
Confidence            998874  3333321            135899999999999765421         22456788999999999996   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          613 GFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       613 ~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|+||||||+||++++++.+||+|||++...
T Consensus       145 gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         145 GIIHGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             CCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence            8999999999999999999999999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=2.2e-16  Score=159.02  Aligned_cols=134  Identities=18%  Similarity=0.335  Sum_probs=110.5

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCCh--------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.||+|++|.||+|+. .|..|+||......        ......+.+|++++..++|+++.....++.+.+        
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--------   72 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE--------   72 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC--------
Confidence            5789999999999987 67789999765321        112346788999999999999887777766543        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++++|.+++...      .+ .+..++.+++.+|.++|+.   +++|||++|.||+++ ++.++|+|||.+
T Consensus        73 ~~~lv~e~~~G~~L~~~~~~~------~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a  141 (211)
T PRK14879         73 NFIIVMEYIEGEPLKDLINSN------GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLA  141 (211)
T ss_pred             CCEEEEEEeCCcCHHHHHHhc------cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcc
Confidence            468999999999999988643      12 7788999999999999997   899999999999999 788999999987


Q ss_pred             cc
Q 004232          641 IV  642 (766)
Q Consensus       641 ~~  642 (766)
                      ..
T Consensus       142 ~~  143 (211)
T PRK14879        142 EF  143 (211)
T ss_pred             cC
Confidence            54

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.67  E-value=2.4e-16  Score=180.65  Aligned_cols=138  Identities=17%  Similarity=0.278  Sum_probs=108.7

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCC-h------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS-K------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~-~------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..|...+.||+|+||+||+|.+.....++.+++... .      ....+++.+|++++++++|++++....++.+..   
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~---  409 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE---  409 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC---
Confidence            345567899999999999998765443332222221 1      122456889999999999999998877776543   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           ..++||||+++++|.+++.           .+..++.+++++|.|||+.   +++|||+||+|||+ +++.++|+
T Consensus       410 -----~~~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~li  469 (535)
T PRK09605        410 -----EKTIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLI  469 (535)
T ss_pred             -----CCEEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEE
Confidence                 4689999999999998774           3467889999999999997   89999999999999 57799999


Q ss_pred             cCCCCccc
Q 004232          636 DYGLSIVS  643 (766)
Q Consensus       636 DFGla~~~  643 (766)
                      |||+++..
T Consensus       470 DFGla~~~  477 (535)
T PRK09605        470 DFGLGKYS  477 (535)
T ss_pred             eCcccccC
Confidence            99998653

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.66  E-value=5.2e-16  Score=154.72  Aligned_cols=130  Identities=19%  Similarity=0.304  Sum_probs=104.1

Q ss_pred             ceecCCceeEEEEEecCCceEEEEEccCCh--------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .||+|+||.||+|.+ +|..|++|......        ....+++.+|++++..++|+++.....++....        .
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~--------~   71 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD--------N   71 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--------C
Confidence            489999999999985 57789999854321        112356788999999999987665555555432        4


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++++|.+.+....          ..++.+++.+|+++|+.   +++|||++|.||+++ ++.+++.|||++.
T Consensus        72 ~~lv~e~~~g~~l~~~~~~~~----------~~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~  137 (199)
T TIGR03724        72 KTIVMEYIEGKPLKDVIEEGN----------DELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGK  137 (199)
T ss_pred             CEEEEEEECCccHHHHHhhcH----------HHHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCc
Confidence            589999999999998775321          07888999999999997   899999999999999 7899999999985


Q ss_pred             c
Q 004232          642 V  642 (766)
Q Consensus       642 ~  642 (766)
                      .
T Consensus       138 ~  138 (199)
T TIGR03724       138 Y  138 (199)
T ss_pred             C
Confidence            4

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=7e-16  Score=178.72  Aligned_cols=159  Identities=26%  Similarity=0.407  Sum_probs=122.8

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCccCCCCCCCCCCCCCccceEecCCCEEEEEeCCCCCCCCCCCCccccccccCCCc
Q 004232           25 QLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSEN  104 (766)
Q Consensus        25 ~~~~~~~~aLl~~k~~~~~~~~l~~W~~~~~~~C~~~~~~~~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~n  104 (766)
                      ...+.|..||++||+++.++.. .+|+   .+||......|.||.|.....                             
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~-~~W~---g~~C~p~~~~w~Gv~C~~~~~-----------------------------  414 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR-FGWN---GDPCVPQQHPWSGADCQFDST-----------------------------  414 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc-CCCC---CCCCCCcccccccceeeccCC-----------------------------
Confidence            3456799999999999977643 4795   367743223467899952110                             


Q ss_pred             ccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCc
Q 004232          105 FSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPN  184 (766)
Q Consensus       105 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  184 (766)
                                .....++.|+|++|.+.|.+|..|++|++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|.
T Consensus       415 ----------~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        415 ----------KGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             ----------CCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence                      0011256788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCEEEccCccCCCCCCccccCC-CCCCEEEccCCcc
Q 004232          185 WFDSLPSLTFLSMRNNKLAGPFPSSIQRI-STLSDLDLSKNAI  226 (766)
Q Consensus       185 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l  226 (766)
                      .+++|++|++|+|++|+++|.+|..++.+ .++..+++++|..
T Consensus       485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            99999999999999999999998887653 3455666666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.65  E-value=1.4e-18  Score=177.37  Aligned_cols=248  Identities=22%  Similarity=0.228  Sum_probs=197.3

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccC-CcCCCCCCcccCCCCCCCEEEccC
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDD-NFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      ..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|++|.+|.+|.+|.+.+ |+|+....+.|++|.+|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            5689999999999999999999999999999999999999999999999987766 999987778999999999999999


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCC--CCCCCC----------CC---CcEE
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDS--NLPKLP----------RG---LVMA  263 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~--~~p~~~----------~~---l~~l  263 (766)
                      |++.-...+.|..|++|..|.+..|.+....- .+..+.+++.+.+..|.+-.  .+|.+.          ..   ....
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~  229 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY  229 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence            99998888899999999999999999975443 47889999999999998532  222211          11   1112


Q ss_pred             EccCCcCccCCcccccCC-CCCC-EEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCc
Q 004232          264 FLSNNSFSGEIPKQYGQL-NQLQ-QLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNK  341 (766)
Q Consensus       264 ~ls~N~l~~~~p~~~~~l-~~L~-~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~  341 (766)
                      .+.++++...-+..|... ..+. .+....+...-.|...|..+++|+.|+|++|++++.-+.+|.....++.|.|..|+
T Consensus       230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~  309 (498)
T KOG4237|consen  230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK  309 (498)
T ss_pred             HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence            244444544444444322 1221 22333344445555678999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          342 LTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       342 l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +.-.--..+.+++.|++|++.+|+++.
T Consensus       310 l~~v~~~~f~~ls~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSLYDNQITT  336 (498)
T ss_pred             HHHHHHHhhhccccceeeeecCCeeEE
Confidence            986555667889999999999999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.3e-18  Score=156.54  Aligned_cols=166  Identities=31%  Similarity=0.468  Sum_probs=105.7

Q ss_pred             ccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCC
Q 004232          138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLS  217 (766)
Q Consensus       138 ~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  217 (766)
                      +.++.+.+.|.||+|+++ .+|+.+..|.+|+.|++++|++. .+|..++.|++|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445666777777777775 56667777777777777777766 55666666666666666666665 5666666666666


Q ss_pred             EEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCC
Q 004232          218 DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM  297 (766)
Q Consensus       218 ~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  297 (766)
                      .|||.+|+++..                                           .+|..|-.+..|+-|+|+.|.|.-+
T Consensus       106 vldltynnl~e~-------------------------------------------~lpgnff~m~tlralyl~dndfe~l  142 (264)
T KOG0617|consen  106 VLDLTYNNLNEN-------------------------------------------SLPGNFFYMTTLRALYLGDNDFEIL  142 (264)
T ss_pred             hhhccccccccc-------------------------------------------cCCcchhHHHHHHHHHhcCCCcccC
Confidence            666666655421                                           2344444455555566666666554


Q ss_pred             CccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCC
Q 004232          298 PPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN  352 (766)
Q Consensus       298 ~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~  352 (766)
                      || .++++++|+.|.+..|.+- ++|..++.++.|+.|.+.+|+++ .+|..+++
T Consensus       143 p~-dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  143 PP-DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             Ch-hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            44 4566667777777776665 66777777777777777777777 45555443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=8.2e-16  Score=157.14  Aligned_cols=197  Identities=17%  Similarity=0.251  Sum_probs=124.8

Q ss_pred             CCCCCcccccceeecCC-----CCC--------------CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHH
Q 004232          536 LRHPHLVCLLGHCIDGG-----GRD--------------DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL  596 (766)
Q Consensus       536 l~Hpniv~l~g~~~~~~-----~~~--------------~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~  596 (766)
                      .+|||||++.++|+++-     +..              ......+|+||.-.+. +|++++..+.    .+...+.-+.
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~----~s~r~~~~~l  347 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH----RSYRTGRVIL  347 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC----CchHHHHHHH
Confidence            47999999999887621     000              0012457899987776 8999987543    3445556678


Q ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCC--cEEEecCCCCcccccc----------cccccCC--CCCC-cc
Q 004232          597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLN--EHR--IAKLSDYGLSIVSEDI----------NSVGGKQ--EDPN-SW  659 (766)
Q Consensus       597 ~~ia~gL~yLH~~~~~~ivHrdlk~~NILld--~~~--~~kl~DFGla~~~~~~----------~~~~~~~--~~~~-~~  659 (766)
                      .|+.+|+.|||.+   +|.|||+|++|||+.  +|.  ...|+|||++...+..          ...++..  ..|. ..
T Consensus       348 aQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~t  424 (598)
T KOG4158|consen  348 AQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIAT  424 (598)
T ss_pred             HHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhh
Confidence            8999999999998   899999999999984  443  5789999987432210          0111110  0010 00


Q ss_pred             cCCC-------CCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHh
Q 004232          660 EMTK-------LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKC  732 (766)
Q Consensus       660 ~~~~-------~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C  732 (766)
                      ..+.       .|+|.|+.|.+-||+++..-||-..+....+...  ..+.....+.+         .....+.+++-..
T Consensus       425 a~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~--Yqe~qLPalp~---------~vpp~~rqlV~~l  493 (598)
T KOG4158|consen  425 AVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT--YQESQLPALPS---------RVPPVARQLVFDL  493 (598)
T ss_pred             cCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhh--hhhhhCCCCcc---------cCChHHHHHHHHH
Confidence            1111       3789999999999999999998654432222111  11111222211         1122356777788


Q ss_pred             ccCCCCCCCCHHHHHHHHH
Q 004232          733 ICSESWSRPSFEDILWNLQ  751 (766)
Q Consensus       733 ~~~~p~~RPs~~ev~~~L~  751 (766)
                      ++.||++||+..-....|+
T Consensus       494 L~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  494 LKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             hcCCccccCCccHHHhHHH
Confidence            9999999999876655554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=8.6e-18  Score=180.56  Aligned_cols=247  Identities=22%  Similarity=0.236  Sum_probs=188.5

Q ss_pred             EEeccccccc-ccCCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCCC------CCCcccCCCC
Q 004232          122 VLSLVSLGIW-GSLPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFNN------TIPNWFDSLP  190 (766)
Q Consensus       122 ~L~L~~n~l~-~~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~  190 (766)
                      .|+|..+.++ ...+..|..+.+|+.|++++|.++..    ++..+...++|++|++++|.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777776 45666778888999999999998542    56677888899999999998873      2445678899


Q ss_pred             CCCEEEccCccCCCCCCccccCCCC---CCEEEccCCccCCCCC-----CCCCC-CCCCEEECCCCCCCCCCC----CC-
Q 004232          191 SLTFLSMRNNKLAGPFPSSIQRIST---LSDLDLSKNAISGSLP-----DLSSL-GSLNVLNLSDNKLDSNLP----KL-  256 (766)
Q Consensus       191 ~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p-----~~~~l-~~L~~L~ls~N~l~~~~p----~~-  256 (766)
                      +|+.|++++|.+.+..+..+..+.+   |++|++++|.+++...     .+..+ ++|+.|++++|.+++...    .. 
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999999998777777766665   9999999999874211     24556 899999999999985321    11 


Q ss_pred             --CCCCcEEEccCCcCccC----CcccccCCCCCCEEEccCCcCCCCC----ccccCCCCCCCeEEeecCcCcccCCccC
Q 004232          257 --PRGLVMAFLSNNSFSGE----IPKQYGQLNQLQQLDMSFNALRGMP----PPAIFSLPNISDLNLASNKFSGSLPKNL  326 (766)
Q Consensus       257 --~~~l~~l~ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~g~~p~~~  326 (766)
                        ...++.+++++|.+++.    ++..+..+++|+.|++++|.+++..    ...+..+++|+.|++++|.+++.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence              24689999999999853    3445566789999999999987543    3345678899999999999985322222


Q ss_pred             C-----CCCCccEEeCcCCccc----cCCCCCCCCCCCCceeecCCCcCCC
Q 004232          327 N-----CGGKLVFFDISNNKLT----GGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       327 ~-----~~~~L~~L~ls~N~l~----g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      .     ....|+.|++++|.++    ..++..+...+.++.+++++|.++.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            1     2478999999999987    2233445556789999999998874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=2.2e-16  Score=180.17  Aligned_cols=249  Identities=17%  Similarity=0.189  Sum_probs=159.5

Q ss_pred             cCCceecCCceeEEEEEe-cCCceEEEEEcc----CC-h-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          487 MSAIMGEGSYGKLYKGRL-ENGTSVAIRCLP----SS-K-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~----~~-~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+++|.|+||.|+.... ......+.|...    .. . ......+..|..+-.+++|||++..+..+.+..       
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~-------  394 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEID-------  394 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcc-------
Confidence            467899999997777653 233334444322    11 1 111222666777888899999998887776643       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ...-+||||++ ||...+....   .+...++-.+..|+..|++|+|+.   +|.|||+|++|++++.++.+||+|||.
T Consensus       395 -~~~~~mE~~~~-Dlf~~~~~~~---~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~  466 (601)
T KOG0590|consen  395 -GILQSMEYCPY-DLFSLVMSNG---KLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGA  466 (601)
T ss_pred             -cchhhhhcccH-HHHHHHhccc---ccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCc
Confidence             23344999999 9999886542   266777888999999999999998   899999999999999999999999999


Q ss_pred             Cccccccc---------ccccCC---CCCCcc-cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          640 SIVSEDIN---------SVGGKQ---EDPNSW-EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       640 a~~~~~~~---------~~~~~~---~~~~~~-~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      +.......         ..+..+   ++.... ++-....||||.||++..|++|+.||.......... ..........
T Consensus       467 ~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~-~~~~~~~~~~  545 (601)
T KOG0590|consen  467 ASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF-KTNNYSDQRN  545 (601)
T ss_pred             ceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch-hhhccccccc
Confidence            85432110         011111   111111 111224699999999999999999876432211110 0000000011


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN--LQYAA  754 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~  754 (766)
                      ....+.   ............++.+.++.||.+|-++++|+++  ++++.
T Consensus       546 ~~~~~~---~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  546 IFEGPN---RLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             cccChH---HHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcc
Confidence            100010   0001122345677889999999999999999865  55543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.58  E-value=5e-16  Score=168.80  Aligned_cols=184  Identities=26%  Similarity=0.349  Sum_probs=135.6

Q ss_pred             ceecCCceeEEEEE----ecCCceEEEEEccCChh--hhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcceE
Q 004232          490 IMGEGSYGKLYKGR----LENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~----~~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|+|.||.|+..+    .+.|...|.|.+++...  ......+.|..++...+ ||.+|++.-.+..+        ...
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~--------~kl   72 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTD--------GKL   72 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccc--------cch
Confidence            36999999999764    34577788887765421  11225566778888887 99999987555543        268


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      +++++|..+|++...+.+..   ..+......+...+|.+++++|..   +|+|||+|++||++|.+|++|+.|||+++.
T Consensus        73 ~l~ld~~rgg~lft~l~~~~---~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske  146 (612)
T KOG0603|consen   73 YLILDFLRGGDLFTRLSKEV---MFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKE  146 (612)
T ss_pred             hHhhhhcccchhhhccccCC---chHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhH
Confidence            99999999999999886543   245555566777889999999997   899999999999999999999999999976


Q ss_pred             cccccccccCCCC--CCcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          643 SEDINSVGGKQED--PNSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       643 ~~~~~~~~~~~~~--~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .-+.....++.++  +.-.......+|+||||++++||+||..||..
T Consensus       147 ~v~~~~~cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  147 AVKEKIACGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             hHhhhhcccchhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch
Confidence            4322111111111  10011244568999999999999999999863

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.57  E-value=1.1e-14  Score=143.72  Aligned_cols=135  Identities=15%  Similarity=0.218  Sum_probs=94.5

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhhh--HHH----------------------HHHHHHHHHhCCCCC--c
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT--VRN----------------------LKLRLDLLAKLRHPH--L  541 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~--~~~----------------------~~~e~~~l~~l~Hpn--i  541 (766)
                      .+.||+|+||.||+|...+|+.||||++.......  ...                      ...|...+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            46799999999999998789999999886532111  111                      123445555554332  2


Q ss_pred             ccccceeecCCCCCCcCcceEEEEEEccCCCChhhh-hhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCC
Q 004232          542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH-ISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRV  619 (766)
Q Consensus       542 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrdl  619 (766)
                      .+.+++            ...++||||+++|++... +....    .. .+...++.+++.++.++|. .   +|+||||
T Consensus        82 ~~~~~~------------~~~~lv~e~~~g~~~~~~~l~~~~----~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl  141 (187)
T cd05119          82 PKPIDL------------NRHVLVMEFIGGDGIPAPRLKDVR----LL-EDPEELYDQILELMRKLYREA---GLVHGDL  141 (187)
T ss_pred             CceEec------------CCCEEEEEEeCCCCccChhhhhhh----hc-ccHHHHHHHHHHHHHHHhhcc---CcCcCCC
Confidence            222221            135899999999665322 21110    11 4567889999999999998 5   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCccc
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~  643 (766)
                      ||+||+++ ++.++++|||.+...
T Consensus       142 ~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         142 SEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             ChhhEEEE-CCcEEEEECcccccc
Confidence            99999999 899999999998543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.56  E-value=7.6e-16  Score=175.09  Aligned_cols=236  Identities=19%  Similarity=0.244  Sum_probs=157.2

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCCh-hhhHHHHHHHHHH--HHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK-KYTVRNLKLRLDL--LAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~~~e~~~--l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++...+.+|++.|=+|.+|+.+.|. |.||++-+.+ ....+.|+++++-  .+.++|||.+++.-+-...        .
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~--------k   94 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTD--------K   94 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhh--------H
Confidence            4566788999999999999988887 7889875543 3334445443332  4556899999986543221        2


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      -.|||-+|..+ +|++.|..+   ..+...++.-|+.|+..|+.-+|..   +|+|||||++||||..-.-+.++||.--
T Consensus        95 AAylvRqyvkh-nLyDRlSTR---PFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsF  167 (1431)
T KOG1240|consen   95 AAYLVRQYVKH-NLYDRLSTR---PFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASF  167 (1431)
T ss_pred             HHHHHHHHHhh-hhhhhhccc---hHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhccccc
Confidence            45788888776 788877543   3467778888999999999999997   8999999999999999888999999764


Q ss_pred             ccc---cccc-cc---------ccCCCCCCcc------------cC-CCCCCCEeehhHHHHHHhc-CCCccccCccchH
Q 004232          641 IVS---EDIN-SV---------GGKQEDPNSW------------EM-TKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQ  693 (766)
Q Consensus       641 ~~~---~~~~-~~---------~~~~~~~~~~------------~~-~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~  693 (766)
                      |..   ++.. ..         ..-.-.|.++            .. .+.+-||||.||++.|+++ |+++|.-.+-.. 
T Consensus       168 KPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~a-  246 (1431)
T KOG1240|consen  168 KPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLA-  246 (1431)
T ss_pred             CCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHh-
Confidence            321   1110 00         0000001100            11 3456799999999999998 466664211000 


Q ss_pred             HHHhhhh---cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          694 EELDSLN---SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       694 ~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                        .+...   .+.-+.++.|+            .+..++..+++.||++|-|+++.++.=
T Consensus       247 --Yr~~~~~~~e~~Le~Ied~------------~~Rnlil~Mi~rdPs~RlSAedyL~~y  292 (1431)
T KOG1240|consen  247 --YRSGNADDPEQLLEKIEDV------------SLRNLILSMIQRDPSKRLSAEDYLQKY  292 (1431)
T ss_pred             --HhccCccCHHHHHHhCcCc------------cHHHHHHHHHccCchhccCHHHHHHhh
Confidence              01000   00011222222            256778899999999999999998763

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.55  E-value=3.7e-14  Score=133.95  Aligned_cols=134  Identities=14%  Similarity=0.193  Sum_probs=110.8

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCC--CCcccccceeecCCCCCCcCcceEEEE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH--PHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~H--pniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      .+.||+|.++.||+++..+ ..++||.......  ...+.+|+..++.++|  +++.+++++....        +..+++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~--------~~~~~v   71 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESD--------GWSYLL   71 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC--------CccEEE
Confidence            4679999999999999754 7899998865433  4678899999999977  4888887766543        257999


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      +||++++.+..+          ++.....++.+++++++++|.....+++|||++|+||+++..+.+++.|||.+..
T Consensus        72 ~e~~~g~~~~~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          72 MEWIEGETLDEV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             EEecCCeecccC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            999999887653          4556677889999999999986555799999999999999989999999998854

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.51  E-value=1.6e-13  Score=140.16  Aligned_cols=139  Identities=15%  Similarity=0.197  Sum_probs=105.1

Q ss_pred             CCcee-cCCceeEEEEEecCCceEEEEEccCCh-------------hhhHHHHHHHHHHHHhCCCCCc--ccccceeecC
Q 004232          488 SAIMG-EGSYGKLYKGRLENGTSVAIRCLPSSK-------------KYTVRNLKLRLDLLAKLRHPHL--VCLLGHCIDG  551 (766)
Q Consensus       488 ~~~lG-~G~fg~Vy~~~~~~g~~vAvK~l~~~~-------------~~~~~~~~~e~~~l~~l~Hpni--v~l~g~~~~~  551 (766)
                      ..+|| .||.|+||+.... +..++||......             ......+.+|++++.+++|++|  .+.+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            35788 8999999999875 6778898775321             1223567889999999998885  6677765443


Q ss_pred             CCCCCcCcceEEEEEEccCC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSN-GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      .+.    ....++|+||+++ .+|.+++.+.    .++..    .+.+++.++.+||+.   +|+||||||+|||++.++
T Consensus       115 ~~~----~~~~~lV~e~l~G~~~L~~~l~~~----~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~  179 (239)
T PRK01723        115 HGL----FYRADILIERIEGARDLVALLQEA----PLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDG  179 (239)
T ss_pred             cCc----ceeeeEEEEecCCCCCHHHHHhcC----CCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCC
Confidence            210    1134699999997 6898887642    23332    356789999999997   899999999999999888


Q ss_pred             cEEEecCCCCcc
Q 004232          631 IAKLSDYGLSIV  642 (766)
Q Consensus       631 ~~kl~DFGla~~  642 (766)
                      .++|+|||.+..
T Consensus       180 ~v~LIDfg~~~~  191 (239)
T PRK01723        180 KFWLIDFDRGEL  191 (239)
T ss_pred             CEEEEECCCccc
Confidence            999999998754

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.50  E-value=2.2e-14  Score=147.30  Aligned_cols=235  Identities=15%  Similarity=0.163  Sum_probs=135.2

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCC----------CCcccccceeec
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRH----------PHLVCLLGHCID  550 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~H----------pniv~l~g~~~~  550 (766)
                      +...+.||.|+|+.||.++. ++|+.+|||.....   .....+++++|.-....+.+          -.++--++...-
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            34467899999999999996 46999999987432   23346777777655444333          112211222221


Q ss_pred             CCCCC---------CcCcceEEEEEEccCCCChhhhhh---cCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccC
Q 004232          551 GGGRD---------DYAVNKVFLVYEFMSNGNFRTHIS---ENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN  617 (766)
Q Consensus       551 ~~~~~---------~~~~~~~~lv~Ey~~~GsL~~~l~---~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHr  617 (766)
                      .+.++         .+..-+.+++|+-+ .+||.+.+.   .... ...+....|+.+..|+.+-+++||+.   +++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEec
Confidence            11111         11111346777776 458877643   2221 12244566777889999999999998   99999


Q ss_pred             CCCCCceEEcCCCcEEEecCCCCccccccccc--ccCCCCCC-----------cccCCCCCCCEeehhHHHHHHhcCCCc
Q 004232          618 RVKTNNILLNEHRIAKLSDYGLSIVSEDINSV--GGKQEDPN-----------SWEMTKLEDDVFSFGFMLLESVAGPSV  684 (766)
Q Consensus       618 dlk~~NILld~~~~~kl~DFGla~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~DV~SfGvil~ElltG~~p  684 (766)
                      ||||+|++++.+|.++++||+-..........  ......|.           ....++.+.|.|++|+++|.|..|..|
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lP  249 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLP  249 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-S
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCC
Confidence            99999999999999999999876433322221  01111111           011245567999999999999999999


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCC
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSR  740 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~R  740 (766)
                      ++.........+               ... .+. +-.+.+..|+...++.+|.+|
T Consensus       250 f~~~~~~~~~~~---------------~f~-~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  250 FGLSSPEADPEW---------------DFS-RCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             TCCCGGGSTSGG---------------GGT-TSS----HHHHHHHHHHT-SSGGGS
T ss_pred             CCCCCccccccc---------------cch-hcC-CcCHHHHHHHHHHccCCcccC
Confidence            874321110000               011 111 222346788899999999988

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1e-13  Score=161.33  Aligned_cols=185  Identities=22%  Similarity=0.304  Sum_probs=129.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC---CCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR---HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~---Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      -..|.+.+.||+|+||+||+|...+|+.||+|.=+....-   +|.--.+++.||+   -+-|..+..++.-.       
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W---EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~-------  766 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW---EFYICLQVMERLKPQMLPSIMHISSAHVFQ-------  766 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce---eeeehHHHHHhhchhhhcchHHHHHHHccC-------
Confidence            4567888999999999999999888999999976543221   1222223444444   12233332222222       


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-------CCc
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-------HRI  631 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-------~~~  631 (766)
                       +.-++|+||.+.|+|.+++..   .+..+|.-.+.++.++++-+++||..   +|||+||||+|.+|-.       ...
T Consensus       767 -~~S~lv~ey~~~Gtlld~~N~---~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~  839 (974)
T KOG1166|consen  767 -NASVLVSEYSPYGTLLDLINT---NKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKG  839 (974)
T ss_pred             -CcceeeeeccccccHHHhhcc---CCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccc
Confidence             245899999999999999973   35689999999999999999999998   8999999999999953       245


Q ss_pred             EEEecCCCCcc---cccccccccCC-------CCCCcccCCCCCCCEeehhHHHHHHhcCCC
Q 004232          632 AKLSDYGLSIV---SEDINSVGGKQ-------EDPNSWEMTKLEDDVFSFGFMLLESVAGPS  683 (766)
Q Consensus       632 ~kl~DFGla~~---~~~~~~~~~~~-------~~~~~~~~~~~~~DV~SfGvil~ElltG~~  683 (766)
                      ++|.|||.+.-   ..+.....+..       .+......-++++|-|.+..+++-|+.|+.
T Consensus       840 l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  840 LYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             eEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            89999999842   22221111110       111122334567899999999999999864

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.48  E-value=1.1e-13  Score=133.10  Aligned_cols=190  Identities=18%  Similarity=0.271  Sum_probs=129.4

Q ss_pred             hcCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCC-CcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP-HLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hp-niv~l~g~~~~~~~~~~~~~  559 (766)
                      .+.|.+.+.||.|+||.+|.|. ..+|+.||||.=......  -++..|..+.+.++|- .|-.+.-|..+.        
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h--pqL~yEskvY~iL~~g~GiP~i~~y~~e~--------   83 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH--PQLLYESKVYRILQGGVGIPHIRHYGTEK--------   83 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC--cchhHHHHHHHHhccCCCCchhhhhcccc--------
Confidence            3678999999999999999998 568999999975443222  2455677777777653 232233233322        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~~kl~D  636 (766)
                      ..-.+|||.. +.+|.++..--.  +.++-.+.+-.|-|+..-++|+|.+   +++||||||+|.|..-+   ..+-+.|
T Consensus        84 ~ynvlVMdLL-GPsLEdLfnfC~--R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LID  157 (341)
T KOG1163|consen   84 DYNVLVMDLL-GPSLEDLFNFCS--RRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLID  157 (341)
T ss_pred             ccceeeeecc-CccHHHHHHHHh--hhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEe
Confidence            2347999975 557777653221  2256677788899999999999998   78999999999998743   3578999


Q ss_pred             CCCCcccccccccccCC-------CCCCccc--------CCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          637 YGLSIVSEDINSVGGKQ-------EDPNSWE--------MTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       637 FGla~~~~~~~~~~~~~-------~~~~~~~--------~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ||+|+...+..+....+       ...+.+.        ..+-..|+=|.|-+|.-.--|.-||..
T Consensus       158 FGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQg  223 (341)
T KOG1163|consen  158 FGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQG  223 (341)
T ss_pred             ccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccc
Confidence            99997654433211111       0000110        111245999999998888899999863

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.8e-13  Score=158.84  Aligned_cols=109  Identities=28%  Similarity=0.479  Sum_probs=100.6

Q ss_pred             CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          260 LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      +..|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|+.++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCC-CCCceeecCCCcCCC
Q 004232          340 NKLTGGLPSCLSNE-SDKRVVKFRGNCLSS  368 (766)
Q Consensus       340 N~l~g~~p~~~~~~-~~l~~l~l~~N~l~~  368 (766)
                      |+++|.+|..+... .++..+++.+|...+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            99999999988753 356678888886544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=8.2e-15  Score=156.33  Aligned_cols=182  Identities=30%  Similarity=0.470  Sum_probs=131.5

Q ss_pred             cCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCE
Q 004232          139 HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD  218 (766)
Q Consensus       139 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  218 (766)
                      ..|..-...||+.|++. .+|..+..+..|..|.|+.|.+. .+|..+.+|..|++|+|+.|+++ .+|..+..|+ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            45666677888888886 68888888888888888888876 67888888888888888888887 6777777664 777


Q ss_pred             EEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCC
Q 004232          219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP  298 (766)
Q Consensus       219 L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~  298 (766)
                      |-+++|+++..+++++.+..|..||.+.|.+.                      .+|..++.+.+|+.|++..|++...|
T Consensus       148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~----------------------slpsql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ----------------------SLPSQLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             EEEecCccccCCcccccchhHHHhhhhhhhhh----------------------hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence            87888887766666666666766766666554                      35667777777777777777777766


Q ss_pred             ccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCC
Q 004232          299 PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCL  350 (766)
Q Consensus       299 ~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~  350 (766)
                      +. ++.| .|..||++.|+++ .||-.|..+..|++|-|.+|.|+ ..|..+
T Consensus       206 ~E-l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  206 EE-LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             HH-HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            53 3444 3667777777776 66777777777777777777776 444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=8.5e-15  Score=156.23  Aligned_cols=175  Identities=31%  Similarity=0.403  Sum_probs=138.5

Q ss_pred             CCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      .|+.-...+|+.|.+ ..+|..+..+..|+.|.|++|.+. .+|..+.+|..|..|+|+.|+++ .+|..+..|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            455556788899998 578999999999999999999996 78999999999999999999998 6788888877 9999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCcEEEccCCcCccCC
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP-RGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~l~ls~N~l~~~~  274 (766)
                      -+++|+++ .+|..++.+..|..||.+.|.+...++.++.+.+|+.|++..|++...++.+. -.|..||+|+|+++ .+
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ec
Confidence            99999997 78999999999999999999999888889999999999999998865444332 12444555555555 45


Q ss_pred             cccccCCCCCCEEEccCCcCCC
Q 004232          275 PKQYGQLNQLQQLDMSFNALRG  296 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~  296 (766)
                      |-.|.+|+.|++|-|.+|.|+.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC
Confidence            5555555555555555555543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.38  E-value=2.5e-12  Score=142.67  Aligned_cols=145  Identities=19%  Similarity=0.276  Sum_probs=99.0

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhH----------------------------------------
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV----------------------------------------  523 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~----------------------------------------  523 (766)
                      .|+ .+.||.|++|.||+|++.+|+.||||+....-....                                        
T Consensus       119 ~fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       119 EFE-EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             hCC-CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            344 357999999999999999999999999865311100                                        


Q ss_pred             HHHHHHHHHHHhC----CCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHH
Q 004232          524 RNLKLRLDLLAKL----RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV  599 (766)
Q Consensus       524 ~~~~~e~~~l~~l----~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~i  599 (766)
                      -+|.+|...+.++    +|.+-|..-.++.+-.       ...+|||||++|++|.+.......+  .   .+..++..+
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~-------~~~vLvmE~i~G~~L~~~~~~~~~~--~---~~~~ia~~~  265 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRT-------SERVLTMEWIDGIPLSDIAALDEAG--L---DRKALAENL  265 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhc-------CCceEEEEeECCcccccHHHHHhcC--C---CHHHHHHHH
Confidence            0234455444444    2333344434443322       2358999999999998876432111  2   234566665


Q ss_pred             HH-HHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccc
Q 004232          600 AK-AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       600 a~-gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~  644 (766)
                      +. .+..+|..   +++|+|+||.||+++.++.+++.|||++....
T Consensus       266 ~~~~l~ql~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       266 ARSFLNQVLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHHHHHHhC---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            55 46778876   89999999999999999999999999986543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.38  E-value=1.4e-11  Score=123.98  Aligned_cols=189  Identities=16%  Similarity=0.282  Sum_probs=130.1

Q ss_pred             cCCCcCCceecCCceeEEEEE-ecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      -.|.+.+.||+|+||+.+.|+ +-+++.||||.=+...  ..-++..|-...+.+ ..+.|-..+-|  ..+|.      
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS--~APQLrdEYr~YKlL~g~~GIP~vYYF--GqeG~------   97 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS--EAPQLRDEYRTYKLLGGTEGIPQVYYF--GQEGK------   97 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC--CcchHHHHHHHHHHHcCCCCCCceeee--ccccc------
Confidence            358899999999999999998 6689999999754322  122344555555555 35677665422  22221      


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-----cEEEe
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-----IAKLS  635 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-----~~kl~  635 (766)
                      .-.||+|.. +-+|.++..=.  ++.++......+|.|+..-++|+|++   ..|.|||||+|.||..-+     .+.+.
T Consensus        98 ~NiLVidLL-GPSLEDLFD~C--gR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~Ihii  171 (449)
T KOG1165|consen   98 YNILVIDLL-GPSLEDLFDLC--GRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHII  171 (449)
T ss_pred             hhhhhhhhh-CcCHHHHHHHh--cCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEE
Confidence            347899976 44666654321  23478888899999999999999998   789999999999997543     48899


Q ss_pred             cCCCCcccccccccccCC-------CCCCcccC--------CCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          636 DYGLSIVSEDINSVGGKQ-------EDPNSWEM--------TKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~~-------~~~~~~~~--------~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      |||+|+...+..+....+       ...+.++.        -+-..|.=|+|-+++..+.|.-||..
T Consensus       172 DFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQG  238 (449)
T KOG1165|consen  172 DFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQG  238 (449)
T ss_pred             eccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccc
Confidence            999998765433221111       00111111        11245999999999999999999863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=1.9e-12  Score=143.40  Aligned_cols=196  Identities=33%  Similarity=0.501  Sum_probs=127.0

Q ss_pred             EEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCC-CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          122 VLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMV-KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       122 ~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      .|++..|.+...+ ..+..++.++.|++.+|.++ .+|+....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            5777777664333 34566678888888888886 5777777774 8888888888887 45567788888888888888


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCccCCcccc
Q 004232          201 KLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      +++ .+|...+.++.|+.|++++|+++...+....+..|++|.+++|.+...+..+  ...+..+.+.+|++.. ++..+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~  251 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESI  251 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchh
Confidence            887 5666666778888888888888855444455666888888888532222111  1223333344444442 24455


Q ss_pred             cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCc
Q 004232          279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK  324 (766)
Q Consensus       279 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~  324 (766)
                      +.+++++.|++++|+++....  +..+.+++.|++++|.++..+|.
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            555556666666666655544  55555566666666655544443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=4.5e-12  Score=140.46  Aligned_cols=198  Identities=34%  Similarity=0.448  Sum_probs=146.7

Q ss_pred             CEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCC-CCCEEEccCccCCCCCCccccCCCCCCEEEccC
Q 004232          145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLP-SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSK  223 (766)
Q Consensus       145 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  223 (766)
                      ..|+++.|.+.. -+..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            468888888743 3445667788999999999998 5677777775 9999999999998 6777889999999999999


Q ss_pred             CccCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccc
Q 004232          224 NAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK--LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPA  301 (766)
Q Consensus       224 N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~  301 (766)
                      |+++...+..+.+++|+.|++++|++....+.  .+..+..+.+++|.+. .++..+.++.++..|.+++|++... +..
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~  250 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PES  250 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cch
Confidence            99986655555889999999999998765554  4555777777777533 3556667777777777777777654 345


Q ss_pred             cCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCC
Q 004232          302 IFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC  349 (766)
Q Consensus       302 ~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~  349 (766)
                      +..+++++.|++++|.++ .++. +....+++.||+++|.++..+|..
T Consensus       251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         251 IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            666677777777777776 3333 666677777777777776555543

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.2e-12  Score=136.89  Aligned_cols=237  Identities=14%  Similarity=0.175  Sum_probs=140.0

Q ss_pred             CCceecCCceeEEEEEecC----CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccc-----eeecCCCCCCcC
Q 004232          488 SAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG-----HCIDGGGRDDYA  558 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g-----~~~~~~~~~~~~  558 (766)
                      ....++.+++.+..++...    .+.++.|..+..+........+++-.+....|-+..-+..     +-.... .....
T Consensus       249 ~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~s~~~d~~~s~~~~~~~-~~v~~  327 (516)
T KOG1033|consen  249 SKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNRSILEDLRPSLFESSKR-NKVGK  327 (516)
T ss_pred             cccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCcccccCCCCchhhhccc-ccccc
Confidence            3455666666666655322    2344444444333233334444555554444433333222     000000 00000


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ...+|+.|++|...+|.++|..+......+|.....++.+++.|+.|   +   +.+|||+||.||....+..+||.|||
T Consensus       328 ~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFg  401 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFG  401 (516)
T ss_pred             ccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhh
Confidence            12478999999999999999876666678899999999999999999   3   67999999999999988899999999


Q ss_pred             CCcccccccc-------cccCCCCC-------CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhccc
Q 004232          639 LSIVSEDINS-------VGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       639 la~~~~~~~~-------~~~~~~~~-------~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      +........+       .....++.       .....+..|+|+||+|++|+|+++ -..++..     ......     
T Consensus       402 l~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er-----~~t~~d-----  471 (516)
T KOG1033|consen  402 LVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER-----IATLTD-----  471 (516)
T ss_pred             heeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH-----HHhhhh-----
Confidence            9744332220       00000111       122456779999999999999997 2222211     000111     


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDI  746 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev  746 (766)
                      .....++|......+.     -..+..+.+...|.+||++.++
T Consensus       472 ~r~g~ip~~~~~d~p~-----e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  472 IRDGIIPPEFLQDYPE-----EYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             hhcCCCChHHhhcCcH-----HHHHHHHhcCCCcccCchHHHH
Confidence            1112222222222222     2356778899999999955443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.21  E-value=1.4e-11  Score=141.02  Aligned_cols=199  Identities=21%  Similarity=0.314  Sum_probs=119.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      -.+|+..+.|-.|+||.||..+.+ +.+.+|. ++++...           |++     ||..+.|              
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~l-----------ilR-----nilt~a~--------------  130 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNL-----------ILR-----NILTFAG--------------  130 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhh-cccccch-----------hhh-----ccccccC--------------
Confidence            367888999999999999999754 4677777 3332211           111     2333321              


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..+.|      ||=...+..-++   +.        .+.+.+++|+|+-   +|+|||+||+|.+|..-|++|++|||++
T Consensus       131 npfvv------gDc~tllk~~g~---lP--------vdmvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLs  190 (1205)
T KOG0606|consen  131 NPFVV------GDCATLLKNIGP---LP--------VDMVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLS  190 (1205)
T ss_pred             Cccee------chhhhhcccCCC---Cc--------chhhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhh
Confidence            12233      444444433221   11        1227899999996   9999999999999999999999999998


Q ss_pred             ccccccc--------------ccccCC--CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          641 IVSEDIN--------------SVGGKQ--EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       641 ~~~~~~~--------------~~~~~~--~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      +..-...              ....++  ..|.+       ...|...+|||++|+|+||-+-|..||..+.  ..+.+.
T Consensus       191 k~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdt--peelfg  268 (1205)
T KOG0606|consen  191 KKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT--PEELFG  268 (1205)
T ss_pred             hhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCC--HHHHHh
Confidence            6421110              000111  11111       1234557899999999999999999987432  222222


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                      .+...+    +..|.    ..+....++.+++.+-++.+|..|-
T Consensus       269 ~visd~----i~wpE----~dea~p~Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  269 QVISDD----IEWPE----EDEALPPEAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             hhhhhh----ccccc----cCcCCCHHHHHHHHHHHHhChHhhc
Confidence            222211    11110    0111123356778888899999885

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=4.9e-12  Score=144.80  Aligned_cols=247  Identities=16%  Similarity=0.207  Sum_probs=162.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe--cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL--ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~  556 (766)
                      ...|.+.+-||+|+|+.|-....  .....+|+|.+....  ....+....|..+-+.+. |+|++.+++...+++    
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~----   94 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPR----   94 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCc----
Confidence            34566777899999999998864  345567777665443  223445556777777776 999999998877653    


Q ss_pred             cCcceEEEEEEccCCCChhhhh-hcCCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCcccCCCCCCceEEcCCC-cEE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHI-SENTPGKVLNWSERLAVLIGVAKAVQFLH-TGVIPGFFNNRVKTNNILLNEHR-IAK  633 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l-~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~ivHrdlk~~NILld~~~-~~k  633 (766)
                          ..++++||..+|++...+ ....  ...+......+..++..|+.|+| ..   ++.|||+||+|.+++..+ ..|
T Consensus        95 ----~~~~~~~~s~g~~~f~~i~~~~~--~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~  165 (601)
T KOG0590|consen   95 ----SYLLSLSYSDGGSLFSKISHPDS--TGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALK  165 (601)
T ss_pred             ----ccccccCcccccccccccccCCc--cCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCccc
Confidence                679999999999999888 3322  12444556678889999999999 65   889999999999999999 999


Q ss_pred             EecCCCCccccc-cc-------ccccCCCCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhh
Q 004232          634 LSDYGLSIVSED-IN-------SVGGKQEDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       634 l~DFGla~~~~~-~~-------~~~~~~~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~  700 (766)
                      ++|||+|..... ..       ..+...++..     .........|+||.|+++.-+++|..|++............+.
T Consensus       166 ~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~  245 (601)
T KOG0590|consen  166 IADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKS  245 (601)
T ss_pred             CCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecc
Confidence            999999854432 11       0110111110     0012245679999999999999999997643221111100000


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...    ..........    .....++..+++..+|..|.+.+++...
T Consensus       246 ~~~----~~~~~~~~~~----~~~~~~~l~k~l~~~~~~r~s~~~~~~d  286 (601)
T KOG0590|consen  246 NKG----RFTQLPWNSI----SDQAHDLLHKILKENPSNRLSIEELKLD  286 (601)
T ss_pred             ccc----ccccCccccC----ChhhhhcccccccCCchhcccccccccc
Confidence            000    0000001111    1124566778888999999998887544

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.16  E-value=7.3e-11  Score=118.75  Aligned_cols=196  Identities=19%  Similarity=0.268  Sum_probs=121.6

Q ss_pred             HHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCC-CCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 004232          533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-KVLNWSERLAVLIGVAKAVQFLHTGVI  611 (766)
Q Consensus       533 l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~-~~l~~~~~~~i~~~ia~gL~yLH~~~~  611 (766)
                      +-++.|-|||+++.|+.+....   ......++.|||+.|++.++|++.... +.+....-.+...||..||.|||+ +.
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~---e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~  196 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYE---EKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CD  196 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccc---cccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cC
Confidence            4456799999999988765321   124678999999999999999864322 223334445678899999999998 56


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccccccc------c-c-----ccCCCCCCcccCCCCCCCEeehhHHHHHHh
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN------S-V-----GGKQEDPNSWEMTKLEDDVFSFGFMLLESV  679 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~------~-~-----~~~~~~~~~~~~~~~~~DV~SfGvil~Ell  679 (766)
                      |+|+|+++..+-|.+..++-+|+.----........      . .     +...++.......+..+|||+||+..+||.
T Consensus       197 PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  197 PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHH
Confidence            799999999999999999988875322211100000      0 0     000011111122334689999999999999


Q ss_pred             cCCCccccCcc-chHHH-HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          680 AGPSVAARKGQ-FLQEE-LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       680 tG~~p~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .|..-...... ...+. +..     ...-.-++..            ..++.+|++.+|..||+|++.+..
T Consensus       277 ilEiq~tnseS~~~~ee~ia~-----~i~~len~lq------------r~~i~kcl~~eP~~rp~ar~llfH  331 (458)
T KOG1266|consen  277 ILEIQSTNSESKVEVEENIAN-----VIIGLENGLQ------------RGSITKCLEGEPNGRPDARLLLFH  331 (458)
T ss_pred             HheeccCCCcceeehhhhhhh-----heeeccCccc------------cCcCcccccCCCCCCcchhhhhcC
Confidence            88643221111 11110 000     0011111110            134578999999999999987654

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.16  E-value=1.3e-10  Score=112.34  Aligned_cols=129  Identities=16%  Similarity=0.108  Sum_probs=94.1

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCccc-ccceeecCCCCCCcCcceEEEEEE
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC-LLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~-l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      +.++.|.++.||+++.. +..+++|....... ....++.|..+++.+.+.+++. ++++.  ..        ..++|||
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~--------~~~lv~e   71 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PE--------TGVLITE   71 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CC--------CCeEEEE
Confidence            46789999999999875 77899998755432 1234678888888887666554 43332  11        2479999


Q ss_pred             ccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          568 FMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV--IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       568 y~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      |+++.++...  .      .   ....++.+++++++.||+..  ...++|+|++|.||+++ ++.+++.|||.+.
T Consensus        72 ~i~G~~l~~~--~------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          72 FIEGSELLTE--D------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             ecCCCccccc--c------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            9999888643  0      0   11235678999999999874  22469999999999999 6689999999874

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.15  E-value=1.6e-10  Score=129.79  Aligned_cols=144  Identities=16%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC-CceEEEEEccCChhh----------------------------------hHHHH
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKY----------------------------------TVRNL  526 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~----------------------------------~~~~~  526 (766)
                      ..+|+. +-||+|++|.||+|++.+ |+.||||+....-..                                  ..+.+
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            345776 689999999999999877 999999998653110                                  01222


Q ss_pred             HHHHHHHHhC----------CCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhh--hhcCCCCCCCCHHHHHH
Q 004232          527 KLRLDLLAKL----------RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH--ISENTPGKVLNWSERLA  594 (766)
Q Consensus       527 ~~e~~~l~~l----------~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~--l~~~~~~~~l~~~~~~~  594 (766)
                      .+|++.+...          .+.+.+.+-.++.+-.       ...+|||||++|+.+.+.  +.+.+    .+.   ..
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~s-------t~~VLvmE~i~G~~l~d~~~l~~~g----~d~---~~  263 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYC-------SETVMVMERMYGIPVSDVAALRAAG----TDM---KL  263 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccC-------CCceEEEeeecCccHHhHHHHHhcC----CCH---HH
Confidence            3344333333          1333333323332211       245799999999999764  22221    121   11


Q ss_pred             HHHHHHHH-HHHHhcCCCCCcccCCCCCCceEEcCCC----cEEEecCCCCccc
Q 004232          595 VLIGVAKA-VQFLHTGVIPGFFNNRVKTNNILLNEHR----IAKLSDYGLSIVS  643 (766)
Q Consensus       595 i~~~ia~g-L~yLH~~~~~~ivHrdlk~~NILld~~~----~~kl~DFGla~~~  643 (766)
                      ++...+.. +.-++..   +++|+|+||.||+++.++    .+++.|||+....
T Consensus       264 la~~~v~~~~~Qif~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        264 LAERGVEVFFTQVFRD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             HHHHHHHHHHHHHHhC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            22211111 1112233   899999999999999887    9999999997544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1e-10  Score=111.90  Aligned_cols=126  Identities=27%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             cccCCCCCCEEecccccccccCCcccc-CCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCccc-CCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIH-RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF-DSLP  190 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~  190 (766)
                      .+.+..+++.|+|++|.|..+  +.++ .+.+|+.||||+|.|+. ++ .+..+++|++|++++|+++.. ++.+ ..++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            345666789999999999654  3465 57899999999999974 43 588899999999999999854 3334 4689


Q ss_pred             CCCEEEccCccCCCCC-CccccCCCCCCEEEccCCccCCCCCC-----CCCCCCCCEEEC
Q 004232          191 SLTFLSMRNNKLAGPF-PSSIQRISTLSDLDLSKNAISGSLPD-----LSSLGSLNVLNL  244 (766)
Q Consensus       191 ~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~l~~L~~L~l  244 (766)
                      +|+.|+|++|+|...- -..+..+++|+.|+|.+|.++.. +.     +..+++|+.||-
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            9999999999987422 14567789999999999988754 32     456788888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.5e-11  Score=126.47  Aligned_cols=163  Identities=25%  Similarity=0.231  Sum_probs=90.2

Q ss_pred             ccCCCCCCEEecccccccccCC--ccccCCCCCCEEecccccCccCCC--ccCCCCCCCCEEEccCCcCCCCCCcc-cCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLP--DKIHRLYSLEYLDLSSNFLFGSVP--PKISTMVKLQTLILDDNFFNNTIPNW-FDS  188 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p--~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~  188 (766)
                      =+++.+|+...|.+.... ..+  .....|++++.||||.|-+....|  .-...|++|+.|+|+.|++....... -..
T Consensus       117 Qsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            456778888888776652 223  345677888888888887754322  33456777777777777775332221 124


Q ss_pred             CCCCCEEEccCccCCCC-CCccccCCCCCCEEEccCCc-cCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEcc
Q 004232          189 LPSLTFLSMRNNKLAGP-FPSSIQRISTLSDLDLSKNA-ISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLS  266 (766)
Q Consensus       189 l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls  266 (766)
                      ++.|+.|.|+.|.|+.. +-..+..+++|+.|+|..|. +...-.....+..|+.|||++|++-..              
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~--------------  261 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF--------------  261 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc--------------
Confidence            56677777777766521 11223445666666666664 111111123344555555555544210              


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCcCCCC
Q 004232          267 NNSFSGEIPKQYGQLNQLQQLDMSFNALRGM  297 (766)
Q Consensus       267 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~  297 (766)
                       +     .-...+.++.|+.|+++.+.+..+
T Consensus       262 -~-----~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  262 -D-----QGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             -c-----cccccccccchhhhhccccCcchh
Confidence             0     012345566666666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.00  E-value=6.6e-11  Score=117.35  Aligned_cols=63  Identities=32%  Similarity=0.390  Sum_probs=34.4

Q ss_pred             ccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCC
Q 004232          185 WFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKL  249 (766)
Q Consensus       185 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l  249 (766)
                      .....+.|+.|||++|.++ .+.++..-++.++.|++|+|.+.. +..+..|++|+.||||+|.+
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLL  341 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchh
Confidence            3444556666666666665 455555555666666666666542 22344455555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.1e-10  Score=121.73  Aligned_cols=191  Identities=26%  Similarity=0.275  Sum_probs=133.0

Q ss_pred             cccCCCCCCEEecccccccccCC--ccccCCCCCCEEecccccCccCCCccC-CCCCCCCEEEccCCcCCCCC-CcccCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLP--DKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTI-PNWFDS  188 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p--~~~~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~-p~~~~~  188 (766)
                      -...|++++.|||+.|-|+...|  .....|++|+.|+||.|++.-...... ..++.|+.|.|+.|.|+-.- -.....
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            56789999999999998865433  456789999999999999964333222 36789999999999998421 223457


Q ss_pred             CCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCC--CCCCCCCCCCEEECCCCCCCCC-CCCCCCCCcEEEc
Q 004232          189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL--PDLSSLGSLNVLNLSDNKLDSN-LPKLPRGLVMAFL  265 (766)
Q Consensus       189 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~l~l  265 (766)
                      +|+|+.|+|..|...+.-..+...+..|+.|||++|++-...  +..+.++.|+.|+++.+.+.+. +|+.         
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~---------  291 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV---------  291 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc---------
Confidence            899999999999644444445566789999999999987544  5578899999999998877642 1111         


Q ss_pred             cCCcCccCCcccccCCCCCCEEEccCCcCCCCCc-cccCCCCCCCeEEeecCcCc
Q 004232          266 SNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP-PAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       266 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  319 (766)
                             ..-.-...+++|++|+++.|++..... ..+..+++|+.|....|.|+
T Consensus       292 -------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  292 -------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             -------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence                   111113346678888888888754331 12334455555555555554

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.95  E-value=9.1e-09  Score=100.56  Aligned_cols=135  Identities=13%  Similarity=0.151  Sum_probs=93.0

Q ss_pred             CceecCCceeEEEEEecC-------CceEEEEEccCCh----------------------hhhHHHHH----HHHHHHHh
Q 004232          489 AIMGEGSYGKLYKGRLEN-------GTSVAIRCLPSSK----------------------KYTVRNLK----LRLDLLAK  535 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~----------------------~~~~~~~~----~e~~~l~~  535 (766)
                      ..||.|.-+.||.|.-.+       +..+|||..+...                      ....+.+.    +|...|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            578999999999998543       4789999875421                      00122233    78888888


Q ss_pred             CCC--CCcccccceeecCCCCCCcCcceEEEEEEccCCCChhh-hhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCC
Q 004232          536 LRH--PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT-HISENTPGKVLNWSERLAVLIGVAKAVQFL-HTGVI  611 (766)
Q Consensus       536 l~H--pniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~-~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~  611 (766)
                      +.-  -++-+.+++  .          .-++||||+.++.+.. .+.+.    .++..+...+..++..+|.++ |..  
T Consensus        83 l~~~Gv~vP~pi~~--~----------~~~lvME~Ig~~~~~~~~Lkd~----~~~~~~~~~i~~~i~~~l~~l~H~~--  144 (197)
T cd05146          83 MQKAGIPCPEVVVL--K----------KHVLVMSFIGDDQVPAPKLKDA----KLNDEEMKNAYYQVLSMMKQLYKEC--  144 (197)
T ss_pred             HHHcCCCCCeEEEe--c----------CCEEEEEEcCCCCccchhhhcc----ccCHHHHHHHHHHHHHHHHHHHHhC--
Confidence            743  334444433  1          2489999998765432 22211    133344566778999999999 665  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                       +++|+||++.||+++ ++.+.|.|||-+...
T Consensus       145 -glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         145 -NLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             -CeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence             899999999999997 467999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=9.1e-11  Score=116.39  Aligned_cols=134  Identities=25%  Similarity=0.319  Sum_probs=106.7

Q ss_pred             ccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 004232          112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS  191 (766)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  191 (766)
                      ..+..-..|+.|||++|.|+ .+.+++.-++.++.|++|+|.|..  -..+..|.+|+.|||++|.++ .+-.|-.+|-+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            34445567889999999884 566778888999999999999863  344888999999999999887 45666678889


Q ss_pred             CCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCC--CCCCCCCCCCCEEECCCCCCCC
Q 004232          192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGS--LPDLSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       192 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~l~~L~~L~ls~N~l~~  251 (766)
                      ++.|.|+.|.+...  +.+.++.+|.+||+++|++...  ...+++|+.|+++.|.+|.+.+
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            99999999988532  5678889999999999998743  2347889999999988888765

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.92  E-value=8.7e-09  Score=104.25  Aligned_cols=145  Identities=19%  Similarity=0.274  Sum_probs=107.7

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCC--CcccccceeecCCCCCCcCcceEEEE
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHP--HLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hp--niv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      +.||.|.++.||+++..+|..+++|....... .....+.+|.++++.+++.  ++.++++++.....     ....++|
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~-----~~~~~~v   78 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSV-----LGTPFYV   78 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCc-----cCCceEE
Confidence            46899999999999987778899998765432 1345788899999998763  45666666544210     0245899


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----------------------------------
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV-----------------------------------  610 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------  610 (766)
                      |||++++++...+..    ..++..++..++.+++++|++||+..                                   
T Consensus        79 ~e~i~G~~l~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (223)
T cd05154          79 MERVDGRVLRDRLLR----PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEP  154 (223)
T ss_pred             EEEeCCEecCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccccc
Confidence            999999988775531    13567777788888888888888521                                   


Q ss_pred             ------------------CCCcccCCCCCCceEEcC--CCcEEEecCCCCcc
Q 004232          611 ------------------IPGFFNNRVKTNNILLNE--HRIAKLSDYGLSIV  642 (766)
Q Consensus       611 ------------------~~~ivHrdlk~~NILld~--~~~~kl~DFGla~~  642 (766)
                                        ...++|+|+.+.||+++.  ++.+.|.||+.+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         155 PAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                              235799999999999998  56789999998754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=5.4e-10  Score=107.00  Aligned_cols=108  Identities=31%  Similarity=0.416  Sum_probs=41.3

Q ss_pred             ccCCCCCCEEecccccCccCCCccCC-CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccc-cCCCC
Q 004232          138 IHRLYSLEYLDLSSNFLFGSVPPKIS-TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSI-QRIST  215 (766)
Q Consensus       138 ~~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~  215 (766)
                      +.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.++.. + .+..++.|+.|++++|+++. +++.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            5667789999999999973 4 3566 588999999999999853 3 47789999999999999985 54444 46899


Q ss_pred             CCEEEccCCccCCC--CCCCCCCCCCCEEECCCCCCC
Q 004232          216 LSDLDLSKNAISGS--LPDLSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       216 L~~L~Ls~N~l~~~--~p~~~~l~~L~~L~ls~N~l~  250 (766)
                      |+.|+|++|++...  +..+..+++|++|+|.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99999999999753  334677899999999998775

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.91  E-value=1.7e-08  Score=95.15  Aligned_cols=132  Identities=21%  Similarity=0.324  Sum_probs=94.7

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEc-cCCh-------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCL-PSSK-------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l-~~~~-------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..+++|+-+.+|.+.+.+ ..+.+|.- ++..       +-..++..+|..++++++---|---.-|..++.        
T Consensus         2 ~~i~~GAEa~i~~~~~~g-~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~--------   72 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLG-LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPD--------   72 (204)
T ss_pred             chhhCCcceeEEeeeccC-cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCC--------
Confidence            357899999999998753 34555643 3321       223456788999998875433332223344442        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ...++|||+++-.|.+.+...          +..++..+-.-+.-||..   +|+|+||.++||++..+. +.+.|||++
T Consensus        73 ~~~I~me~I~G~~lkd~l~~~----------~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg  138 (204)
T COG3642          73 NGLIVMEYIEGELLKDALEEA----------RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLG  138 (204)
T ss_pred             CCEEEEEEeCChhHHHHHHhc----------chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcc
Confidence            468999999999999888643          245666677778889997   999999999999998654 899999998


Q ss_pred             ccc
Q 004232          641 IVS  643 (766)
Q Consensus       641 ~~~  643 (766)
                      ...
T Consensus       139 ~~s  141 (204)
T COG3642         139 EFS  141 (204)
T ss_pred             ccc
Confidence            654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=1.5e-10  Score=128.76  Aligned_cols=196  Identities=32%  Similarity=0.322  Sum_probs=108.8

Q ss_pred             cCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      ..+..++.+++..|.+.. +-..+..+++|+.|+|..|+|.+ +...+..+++|++|+|++|.|+...+  +..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhh
Confidence            356667777777777754 22346677778888888887763 33336667777777777777765433  455666777


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCC-CCCCCcEEEccCCcCcc
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~l~ls~N~l~~  272 (766)
                      |++++|.++..  ..+..++.|+.+++++|.+...-+. +..+.+|+.+++.+|.+...-.. ....+..+.+..|.++.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccccee
Confidence            77777777632  3445567777777777777643322 46666777777777765422111 01122223444454442


Q ss_pred             CCcccccCCC--CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          273 EIPKQYGQLN--QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       273 ~~p~~~~~l~--~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      .-+.  ..+.  .|+.+++++|++...+ ..+..+.++..|++.+|++.
T Consensus       223 ~~~l--~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  223 LEGL--NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccCc--ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccc
Confidence            2111  1111  2455555555554432 22334444555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=5.5e-10  Score=124.18  Aligned_cols=198  Identities=30%  Similarity=0.359  Sum_probs=151.7

Q ss_pred             ccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 004232          112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS  191 (766)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  191 (766)
                      ..+..+++|..|++..|.|.++.. .+..+++|++|+|++|.|+...  .+..++.|+.|++++|.++.  -..+..+++
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~  163 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKS  163 (414)
T ss_pred             cccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchh
Confidence            458889999999999999976543 3788999999999999997543  47778889999999999974  345667999


Q ss_pred             CCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CC-CCcEEEccC
Q 004232          192 LTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL--PR-GLVMAFLSN  267 (766)
Q Consensus       192 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~--~~-~l~~l~ls~  267 (766)
                      |+.+++++|+++..-+ . ...+.+|+.+++.+|.+. .+..+..+..+..+++..|.++..-+.-  .. .+..+++++
T Consensus       164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSG  241 (414)
T ss_pred             hhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhccc
Confidence            9999999999985444 2 577899999999999987 3444555556666688888886432211  11 278889999


Q ss_pred             CcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          268 NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       268 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      |.+.. ++..+..+.++..|++++|++...-.  +...+.+..+.+..|.+.
T Consensus       242 n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  242 NRISR-SPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             Ccccc-ccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            99873 33667788999999999999987643  344556667777777665

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.82  E-value=2.2e-08  Score=110.84  Aligned_cols=160  Identities=21%  Similarity=0.299  Sum_probs=111.6

Q ss_pred             ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC
Q 004232          504 LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP  583 (766)
Q Consensus       504 ~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~  583 (766)
                      ..++.+|.|...+..........++-++.|+.+|||||++++......+        .+|+|+|-+.  -|..++.+.. 
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~--------~~ylvTErV~--Pl~~~lk~l~-  102 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEG--------TLYLVTERVR--PLETVLKELG-  102 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccC--------ceEEEeeccc--cHHHHHHHhH-
Confidence            4468888888876655444455677788999999999999998776653        6899999764  3555554422 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc-cc-----CCCCCC
Q 004232          584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-GG-----KQEDPN  657 (766)
Q Consensus       584 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~-~~-----~~~~~~  657 (766)
                           -....-.+.||+.||.|||+.+  .++|+++.-..|.+++.|+-||++|-+....+..... ..     ....|.
T Consensus       103 -----~~~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~  175 (690)
T KOG1243|consen  103 -----KEEVCLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPE  175 (690)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChh
Confidence                 2233445778999999999876  7899999999999999999999998775332221110 00     001111


Q ss_pred             cccCCCCCCCEeehhHHHHHHhcC
Q 004232          658 SWEMTKLEDDVFSFGFMLLESVAG  681 (766)
Q Consensus       658 ~~~~~~~~~DV~SfGvil~ElltG  681 (766)
                      .....+...|.|-|||++||++.|
T Consensus       176 ~~~~s~~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  176 EIDPSEWSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             hcCccccchhhhhHHHHHHHHhCc
Confidence            111111235999999999999999

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.82  E-value=4.9e-08  Score=91.51  Aligned_cols=143  Identities=22%  Similarity=0.242  Sum_probs=100.8

Q ss_pred             cCCceecCCceeEEEEEecCCceEEEEEccC-C-------hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPS-S-------KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~-~-------~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ....+-+|+-+.|+++.+. |+...||.-.. .       .+-..++.++|++.+.+++--.|---.-++.+..      
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~------   83 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY------   83 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC------
Confidence            4568899999999999875 67766775432 2       1233567888999999876444433333444443      


Q ss_pred             cceEEEEEEccCC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEE
Q 004232          559 VNKVFLVYEFMSN-GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR---IAKL  634 (766)
Q Consensus       559 ~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~---~~kl  634 (766)
                        .-.|+|||+++ -++.+++....... ..-......+..|-+.+.-||..   +++|+||.++||+|..++   .+-+
T Consensus        84 --~~~i~ME~~~g~~~vk~~i~~~~~~~-~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~l  157 (229)
T KOG3087|consen   84 --GGQIYMEFIDGASTVKDFILSTMEDE-SEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPIL  157 (229)
T ss_pred             --CCeEEEEeccchhHHHHHHHHHccCc-ccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEE
Confidence              23799999987 46788876543221 12222356778888999999998   899999999999997654   4689


Q ss_pred             ecCCCCcc
Q 004232          635 SDYGLSIV  642 (766)
Q Consensus       635 ~DFGla~~  642 (766)
                      .|||++..
T Consensus       158 Idfgls~~  165 (229)
T KOG3087|consen  158 IDFGLSSV  165 (229)
T ss_pred             Eeecchhc
Confidence            99999844

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.77  E-value=4.4e-10  Score=114.42  Aligned_cols=238  Identities=21%  Similarity=0.259  Sum_probs=148.0

Q ss_pred             ccccCCCCCCEEeccccccccc----CCccccCCCCCCEEecccccCccC----CCc-------cCCCCCCCCEEEccCC
Q 004232          112 TTLARLTSLRVLSLVSLGIWGS----LPDKIHRLYSLEYLDLSSNFLFGS----VPP-------KISTMVKLQTLILDDN  176 (766)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~-------~~~~l~~L~~L~L~~N  176 (766)
                      +.+..+..++.|+|++|.|.-.    +-..+.+.++|+.-++|. -++|.    +|+       .+-.+++|+.|+||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3456677788888888887432    444567777888888874 33443    232       3445667888888888


Q ss_pred             cCCCCCCcc----cCCCCCCCEEEccCccCCCCCCc-------------cccCCCCCCEEEccCCccCCCCC-----CCC
Q 004232          177 FFNNTIPNW----FDSLPSLTFLSMRNNKLAGPFPS-------------SIQRISTLSDLDLSKNAISGSLP-----DLS  234 (766)
Q Consensus       177 ~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~-------------~~~~l~~L~~L~Ls~N~l~~~~p-----~~~  234 (766)
                      -|.-.-+..    +.++..|++|.|.+|.+.-.--.             -..+-+.|+++..+.|++.....     .+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            776444433    35677788888888776411111             12233455666666665542211     133


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCC----ccccCCCCCCCe
Q 004232          235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP----PPAIFSLPNISD  310 (766)
Q Consensus       235 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~----~~~~~~l~~L~~  310 (766)
                      ..+.|+.+.++.|.+...                -. ..+...|..+++|+.|||..|-|+..-    ...+..+++|+.
T Consensus       183 ~~~~leevr~~qN~I~~e----------------G~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPE----------------GV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             hccccceEEEecccccCc----------------hh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            445555555555544210                00 013345678888999999999887432    234567788999


Q ss_pred             EEeecCcCcccCCccC-----CCCCCccEEeCcCCcccc----CCCCCCCCCCCCceeecCCCcCC
Q 004232          311 LNLASNKFSGSLPKNL-----NCGGKLVFFDISNNKLTG----GLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       311 L~L~~N~l~g~~p~~~-----~~~~~L~~L~ls~N~l~g----~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      |+++++.+...-...+     ...++|+.+.+.+|.++-    .+-.++...+.|..|++++|.+.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999988864322221     235688999999998863    23445667888999999999884

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=5.8e-09  Score=82.08  Aligned_cols=57  Identities=35%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCC
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN  176 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  176 (766)
                      |++|+|++|++....++.|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333333333333333333333333333333333333333333333333333333333

...

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=1.1e-08  Score=112.14  Aligned_cols=243  Identities=17%  Similarity=0.156  Sum_probs=156.6

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEe--cCCceEEEEEccCChhhhHHH--HHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRL--ENGTSVAIRCLPSSKKYTVRN--LKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~--~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      ..+.+|.+...||.|.|+.|++...  .++..+++|.+...-.....+  -..|+-+...+ .|.++++++..+..-   
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~---  338 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQL---  338 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccc---
Confidence            4567888899999999999999874  367788998876543222111  22344444444 588888876554443   


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAK  633 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~k  633 (766)
                           .+.|+--||+++++....+.-   ...++...++++..+++.++.++|+.   .++|+|+||+||++..+ +..+
T Consensus       339 -----r~~~ip~e~~~~~s~~l~~~~---~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~  407 (524)
T KOG0601|consen  339 -----RQGYIPLEFCEGGSSSLRSVT---SQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSK  407 (524)
T ss_pred             -----ccccCchhhhcCcchhhhhHH---HHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhh
Confidence                 256789999999998765421   12366677888999999999999985   88999999999999876 8899


Q ss_pred             EecCCCCcccccc--cccccCC-----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          634 LSDYGLSIVSEDI--NSVGGKQ-----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       634 l~DFGla~~~~~~--~~~~~~~-----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      +.|||++....-.  .......     +....-..+-.++|+||||.-+.|.++|..-....... .    .+. .+...
T Consensus       408 ~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~-~----~i~-~~~~p  481 (524)
T KOG0601|consen  408 LGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQS-L----TIR-SGDTP  481 (524)
T ss_pred             ccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCcccccc-e----eee-ccccc
Confidence            9999998531110  0001111     11111123345789999999999999996543221111 0    000 00000


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      .       .....   .+...+++.-...++..||.+.+...+.+.
T Consensus       482 ~-------~~~~~---~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  482 N-------LPGLK---LQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             C-------CCchH---HhhhhhhhhhcCCccccchhhhhhcccchh
Confidence            0       00001   224456677788999999999887766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=6.9e-09  Score=81.64  Aligned_cols=61  Identities=39%  Similarity=0.554  Sum_probs=57.1

Q ss_pred             CCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccC
Q 004232          142 YSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL  202 (766)
Q Consensus       142 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  202 (766)
                      ++|++|+|++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999977778999999999999999999988889999999999999999985

...

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=2.3e-08  Score=109.73  Aligned_cols=237  Identities=19%  Similarity=0.202  Sum_probs=146.9

Q ss_pred             CCcCCceec--CCceeEEEEEe---cCCceEEEEEccC--ChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          485 FDMSAIMGE--GSYGKLYKGRL---ENGTSVAIRCLPS--SKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       485 f~~~~~lG~--G~fg~Vy~~~~---~~g~~vAvK~l~~--~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      |.....+|+  |.+|.||.++.   +++..+|+|+-+.  ........=.+|.....++ .|+|.|+....+...+    
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~----  191 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSG----  191 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCC----
Confidence            455678899  99999999986   4688899987332  2122222334455555566 4999999776666543    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHH----HHHHHhcCCCCCcccCCCCCCceEEcCC-Cc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK----AVQFLHTGVIPGFFNNRVKTNNILLNEH-RI  631 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~----gL~yLH~~~~~~ivHrdlk~~NILld~~-~~  631 (766)
                          ..++-+|++. .++..+.+...  ..+.......+..+...    |+.++|..   .++|-|+||.||.+..+ ..
T Consensus       192 ----~lfiqtE~~~-~sl~~~~~~~~--~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s  261 (524)
T KOG0601|consen  192 ----ILFIQTELCG-ESLQSYCHTPC--NFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTS  261 (524)
T ss_pred             ----cceeeecccc-chhHHhhhccc--ccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccce
Confidence                5678888776 68888776432  22333444555555555    99999997   89999999999999988 78


Q ss_pred             EEEecCCCCccccccccccc-----C-CCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccC-ccchHHHHhh
Q 004232          632 AKLSDYGLSIVSEDINSVGG-----K-QEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARK-GQFLQEELDS  698 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~-----~-~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~-~~~~~~~~~~  698 (766)
                      .+.+|||+.....+......     . .....+      ...++..+|+||+|.+..|..+|....... ...    |..
T Consensus       262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~----W~~  337 (524)
T KOG0601|consen  262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSS----WSQ  337 (524)
T ss_pred             eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCC----ccc
Confidence            99999998754433221110     0 011111      122345679999999999999986554321 011    111


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ........++.++     ...    .+-......++.+|..|++...+..
T Consensus       338 ~r~~~ip~e~~~~-----~s~----~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  338 LRQGYIPLEFCEG-----GSS----SLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             cccccCchhhhcC-----cch----hhhhHHHHhcCcchhhhhHHHHHhc
Confidence            1100001111111     111    1222567788999999998876654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.3e-08  Score=120.91  Aligned_cols=109  Identities=27%  Similarity=0.341  Sum_probs=71.7

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .|..++.|++|||++|.=.+.+|+.+++|-+|++|||++..+. .+|..+.+|.+|.+|++..+.....+|.....|++|
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            3666777777777776666777777777777777777777775 677777777777777777776655666666667777


Q ss_pred             CEEEccCcc--CCCCCCccccCCCCCCEEEcc
Q 004232          193 TFLSMRNNK--LAGPFPSSIQRISTLSDLDLS  222 (766)
Q Consensus       193 ~~L~L~~N~--l~~~~p~~~~~l~~L~~L~Ls  222 (766)
                      ++|.+..-.  .....-..+.++.+|+.|...
T Consensus       645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  645 RVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cEEEeeccccccchhhHHhhhcccchhhheee
Confidence            777775543  122222334455555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.2e-08  Score=121.23  Aligned_cols=247  Identities=20%  Similarity=0.210  Sum_probs=152.3

Q ss_pred             CCCCCEEeccccc--ccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          117 LTSLRVLSLVSLG--IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       117 l~~L~~L~L~~n~--l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      .++|++|-+..|.  +....++.|..++.|++||||+|.--+.+|..+++|-+|++|+|++..+. .+|..+++|..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4478899888886  44444455888999999999998877889999999999999999999988 78999999999999


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC---CCCCCCCCCEEECCCCCCCCCCCC------CCCCCcEEEc
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP---DLSSLGSLNVLNLSDNKLDSNLPK------LPRGLVMAFL  265 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~l~~L~~L~ls~N~l~~~~p~------~~~~l~~l~l  265 (766)
                      |++..+.-...+|.....|++|++|.+.........-   .+.+|.+|+.+....... ..+-.      +....+.+.+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh
Confidence            9999988766777777889999999997765332211   244555555555433222 00011      1111222332


Q ss_pred             cCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCC------CCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          266 SNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS------LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       266 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      .++... ..+..++.+.+|+.|.+.+.............      ++++..+...+...- ..+....-.++|+.|++..
T Consensus       702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~  779 (889)
T KOG4658|consen  702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS  779 (889)
T ss_pred             cccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence            232222 34566778889999998888876443322111      112222211111110 1122223346778888876


Q ss_pred             CccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          340 NKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       340 N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      ......+.+....+..+..+.+..+.+.
T Consensus       780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  780 CRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             ccccccCCCHHHHhhhcccEEecccccc
Confidence            6554444444333443443334444443

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.58  E-value=5e-07  Score=88.04  Aligned_cols=124  Identities=15%  Similarity=0.264  Sum_probs=78.3

Q ss_pred             eEEEEEecCCceEEEEEccCCh--------------h------------hhHHHHHHHHHHHHhCCCCC--cccccceee
Q 004232          498 KLYKGRLENGTSVAIRCLPSSK--------------K------------YTVRNLKLRLDLLAKLRHPH--LVCLLGHCI  549 (766)
Q Consensus       498 ~Vy~~~~~~g~~vAvK~l~~~~--------------~------------~~~~~~~~e~~~l~~l~Hpn--iv~l~g~~~  549 (766)
                      .||.|...+|..||||..+...              .            ......++|.+.|.++..-.  +-+.+++  
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--   78 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDY--   78 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEE--
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEE--
Confidence            4899998899999999875421              0            01234677999999997653  3444433  


Q ss_pred             cCCCCCCcCcceEEEEEEccC--CCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCcccCCCCCCceEE
Q 004232          550 DGGGRDDYAVNKVFLVYEFMS--NGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL-HTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~--~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrdlk~~NILl  626 (766)
                      .          .-++||||++  +..+.. +....    ++......++.++...+..+ |..   +++|+||.+.||++
T Consensus        79 ~----------~~~ivME~I~~~G~~~~~-l~~~~----~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv  140 (188)
T PF01163_consen   79 N----------RNVIVMEYIGEDGVPLPR-LKDVD----LSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILV  140 (188)
T ss_dssp             E----------TTEEEEE--EETTEEGGC-HHHCG----GGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEE
T ss_pred             e----------CCEEEEEecCCCccchhh-HHhcc----ccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEe
Confidence            1          2389999999  544544 33221    11223445666777766665 565   89999999999999


Q ss_pred             cCCCcEEEecCCCCcc
Q 004232          627 NEHRIAKLSDYGLSIV  642 (766)
Q Consensus       627 d~~~~~kl~DFGla~~  642 (766)
                      +++ .+.|.|||-+..
T Consensus       141 ~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen  141 DDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             ETT-CEEE--GTTEEE
T ss_pred             ecc-eEEEEecCccee
Confidence            987 999999998743

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.49  E-value=3.6e-06  Score=87.12  Aligned_cols=144  Identities=12%  Similarity=0.061  Sum_probs=97.0

Q ss_pred             ceecCCceeEEEEEecCCceEEEEEccCChhh-hH----------HHHHHHHHHHHhCCCCC--cccccceeecCCCCCC
Q 004232          490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY-TV----------RNLKLRLDLLAKLRHPH--LVCLLGHCIDGGGRDD  556 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~----------~~~~~e~~~l~~l~Hpn--iv~l~g~~~~~~~~~~  556 (766)
                      .+-+.....|++..+ +|+.+.||........ ..          ..+.+|...+.++...+  ....+++.....+   
T Consensus        29 ~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~---  104 (268)
T PRK15123         29 VFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSN---  104 (268)
T ss_pred             EEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCC---
Confidence            344333445777766 4778999976443211 11          13678888877774333  3444555543210   


Q ss_pred             cCcceEEEEEEccCCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-------
Q 004232          557 YAVNKVFLVYEFMSNG-NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-------  628 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~G-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-------  628 (766)
                      .....-++|+|++++- +|.+++.+... ...+...+..++.+++..++-||..   +|+|+|++++|||++.       
T Consensus       105 ~~~~~s~LVte~l~~~~sL~~~~~~~~~-~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~  180 (268)
T PRK15123        105 PATRTSFIITEDLAPTISLEDYCADWAT-NPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREE  180 (268)
T ss_pred             CccceeEEEEeeCCCCccHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCC
Confidence            0112468999999986 79888754211 2244566778899999999999998   9999999999999985       


Q ss_pred             CCcEEEecCCCCc
Q 004232          629 HRIAKLSDYGLSI  641 (766)
Q Consensus       629 ~~~~kl~DFGla~  641 (766)
                      ++.+.+.||+.+.
T Consensus       181 ~~~~~LIDl~r~~  193 (268)
T PRK15123        181 DLKLSVIDLHRAQ  193 (268)
T ss_pred             CceEEEEECCccc
Confidence            4689999999874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=3.1e-08  Score=101.21  Aligned_cols=205  Identities=24%  Similarity=0.294  Sum_probs=125.7

Q ss_pred             cccCCCCCCEEecccccccc----cCCc-------cccCCCCCCEEecccccCccCCCc----cCCCCCCCCEEEccCCc
Q 004232          113 TLARLTSLRVLSLVSLGIWG----SLPD-------KIHRLYSLEYLDLSSNFLFGSVPP----KISTMVKLQTLILDDNF  177 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~----~~p~-------~~~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~  177 (766)
                      .+.+.++|+.-++++- ++|    .+|+       ++...++|++||||.|-|...-+.    .+..++.|++|.|.+|.
T Consensus        53 ~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   53 VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            4555556666666542 222    2333       334555777777777776433332    24456777777777776


Q ss_pred             CCCCC-------------CcccCCCCCCCEEEccCccCCCC----CCccccCCCCCCEEEccCCccCC--C---CCCCCC
Q 004232          178 FNNTI-------------PNWFDSLPSLTFLSMRNNKLAGP----FPSSIQRISTLSDLDLSKNAISG--S---LPDLSS  235 (766)
Q Consensus       178 l~~~~-------------p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~--~---~p~~~~  235 (766)
                      +.-.-             -.-.++-++|+++...+|++...    +...|...+.|+.+.++.|.+..  .   ...+..
T Consensus       132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~  211 (382)
T KOG1909|consen  132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH  211 (382)
T ss_pred             CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence            64110             11133456788888888877532    12245566778888888877641  1   012566


Q ss_pred             CCCCCEEECCCCCCCCC--------CCCCCCCCcEEEccCCcCccCCcccc-----cCCCCCCEEEccCCcCCCC----C
Q 004232          236 LGSLNVLNLSDNKLDSN--------LPKLPRGLVMAFLSNNSFSGEIPKQY-----GQLNQLQQLDMSFNALRGM----P  298 (766)
Q Consensus       236 l~~L~~L~ls~N~l~~~--------~p~~~~~l~~l~ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~~----~  298 (766)
                      +++|++|||.+|-|+..        +|.++ .|+.++++++.++..=...|     ...++|+.|.|.+|.++..    +
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l  290 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL  290 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence            77888888888877532        23333 67777787777764322222     2468999999999998743    2


Q ss_pred             ccccCCCCCCCeEEeecCcCc
Q 004232          299 PPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       299 ~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      ...+...+.|..|+|++|.+.
T Consensus       291 a~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  291 AACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHhcchhhHHhcCCccccc
Confidence            234556889999999999994

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.38  E-value=2.1e-06  Score=92.49  Aligned_cols=170  Identities=16%  Similarity=0.237  Sum_probs=118.6

Q ss_pred             eeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCC-CCh
Q 004232          497 GKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN-GNF  574 (766)
Q Consensus       497 g~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~-GsL  574 (766)
                      .+-||+.. .+|..++.|++...+.........-++.++++.|+|+|++..++....    +...-+++||+|.|+ ++|
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~t----F~D~SlvlvYDYyP~s~TL  365 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYT----FGDLSLVLVYDYYPSSPTL  365 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhc----cCcceEEEEEecCCCCchH
Confidence            46888874 479999999995433222212223466889999999999999887321    122468999999986 667


Q ss_pred             hhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          575 RTHISENTP------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       575 ~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      .++-....+            +........+.++.|+..||.++|+.   |..-+-|.+.+||++.+.+++|+.-|...+
T Consensus       366 ~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dv  442 (655)
T KOG3741|consen  366 YDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDV  442 (655)
T ss_pred             HHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceee
Confidence            664322111            12356677889999999999999997   777799999999999998888887776544


Q ss_pred             cccccccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCC
Q 004232          643 SEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGP  682 (766)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~  682 (766)
                      .....      ..+   -....+-|.=.||.+++-|.||.
T Consensus       443 l~~d~------~~~---le~~Qq~D~~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  443 LQEDP------TEP---LESQQQNDLRDLGLLLLALATGT  473 (655)
T ss_pred             ecCCC------Ccc---hhHHhhhhHHHHHHHHHHHhhcc
Confidence            32211      000   01112458888999999999984

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.34  E-value=7.3e-07  Score=64.32  Aligned_cols=39  Identities=33%  Similarity=0.617  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHcCCC-C-CCCCCccCCC-CCCCCCCCCCccceEec
Q 004232           28 SSQTQVLLQLRKHLEY-P-KQLEIWINHG-ADFCYISSSTQVNITCQ   71 (766)
Q Consensus        28 ~~~~~aLl~~k~~~~~-~-~~l~~W~~~~-~~~C~~~~~~~~gv~C~   71 (766)
                      ++|++||++||+++.+ | ..+++|+.++ .+||+|.     ||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~-----GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWS-----GVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCST-----TEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeec-----cEEeC
Confidence            5799999999999984 5 5899998763 6999985     69994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.26  E-value=8.1e-06  Score=81.91  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=87.3

Q ss_pred             CcCCceecCCceeEEEEEecCCceEEEEEccCChh----------------------hhHHHHHHHHHHHHhCCCC--Cc
Q 004232          486 DMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK----------------------YTVRNLKLRLDLLAKLRHP--HL  541 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----------------------~~~~~~~~e~~~l~~l~Hp--ni  541 (766)
                      .+...||-|.-+.||.|..+.|.++|||.=.....                      ..+...++|.++|.++.-.  .+
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            45688999999999999999999999996432110                      1133456788888887533  33


Q ss_pred             ccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHH-HHHHHHHHHhcCCCCCcccCCCC
Q 004232          542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI-GVAKAVQFLHTGVIPGFFNNRVK  620 (766)
Q Consensus       542 v~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~-~ia~gL~yLH~~~~~~ivHrdlk  620 (766)
                      -+.++            .+.-.+||||+++-.|...=-     ..-.....+..+. .+..+  | + .   ++||+|+.
T Consensus       174 P~P~~------------~nRHaVvMe~ieG~eL~~~r~-----~~en~~~il~~il~~~~~~--~-~-~---GiVHGDlS  229 (304)
T COG0478         174 PKPIA------------WNRHAVVMEYIEGVELYRLRL-----DVENPDEILDKILEEVRKA--Y-R-R---GIVHGDLS  229 (304)
T ss_pred             CCccc------------cccceeeeehcccceeecccC-----cccCHHHHHHHHHHHHHHH--H-H-c---CccccCCc
Confidence            33332            245689999999976654210     0112333333332 23322  2 3 2   89999999


Q ss_pred             CCceEEcCCCcEEEecCCC
Q 004232          621 TNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       621 ~~NILld~~~~~kl~DFGl  639 (766)
                      .-||+++++|.+.+.||--
T Consensus       230 efNIlV~~dg~~~vIDwPQ  248 (304)
T COG0478         230 EFNILVTEDGDIVVIDWPQ  248 (304)
T ss_pred             hheEEEecCCCEEEEeCcc
Confidence            9999999999999999943

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=1e-08  Score=113.04  Aligned_cols=176  Identities=28%  Similarity=0.344  Sum_probs=115.1

Q ss_pred             CccccCCCCCCEEecccccCccCCCccCCCC-CCCCEEEccCCcCC----------CCCCcccCCCCCCCEEEccCccCC
Q 004232          135 PDKIHRLYSLEYLDLSSNFLFGSVPPKISTM-VKLQTLILDDNFFN----------NTIPNWFDSLPSLTFLSMRNNKLA  203 (766)
Q Consensus       135 p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~----------~~~p~~~~~l~~L~~L~L~~N~l~  203 (766)
                      |-.|..+.+|+.|.|.++.|.. . ..+..+ ..|++|.-+ |.+.          |.+...+ ....|.+.+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence            5567777888888888877752 1 111111 123333222 2111          1111111 1236777788888887


Q ss_pred             CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCccCCcccccC
Q 004232          204 GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSGEIPKQYGQ  280 (766)
Q Consensus       204 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~~~p~~~~~  280 (766)
                       .+..++.-++.|+.|||++|+++.. ..+..|+.|++|||++|.++- +|.+   ...|..|.++||.++..  ..+.+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhh--hhHHh
Confidence             5667777788888888888888743 367778888888888888864 3332   23478888888887642  35678


Q ss_pred             CCCCCEEEccCCcCCCCCc-cccCCCCCCCeEEeecCcCc
Q 004232          281 LNQLQQLDMSFNALRGMPP-PAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       281 l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +.+|+.||+++|-|.+.-. .-+..+..|+.|+|.+|.+.
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8999999999998876432 12455778899999999885

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.20  E-value=1.8e-08  Score=111.18  Aligned_cols=125  Identities=32%  Similarity=0.355  Sum_probs=90.7

Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCc-ccCCCCCCCEEEc
Q 004232          119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPN-WFDSLPSLTFLSM  197 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L  197 (766)
                      .|.+.+.++|.+. .+..++.-++.|+.||||+|+++..  +.+..|++|++|||++|.+.. +|. ....+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence            4666777777774 3455677788888888888888632  378888888888888888873 332 222333 888888


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCC--CCCCCCCCCCCEEECCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGS--LPDLSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~l~~L~~L~ls~N~l~  250 (766)
                      ++|.++..  ..+.+|.+|+.|||++|-|++.  +..++.|..|+.|+|.+|.+-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88888643  3467888888889998888753  234667778888888888774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=2e-07  Score=93.08  Aligned_cols=87  Identities=26%  Similarity=0.308  Sum_probs=57.8

Q ss_pred             CCCCCCEEecccccccc--cCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCC-CCcccCCCCCC
Q 004232          116 RLTSLRVLSLVSLGIWG--SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNT-IPNWFDSLPSL  192 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~--~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L  192 (766)
                      ..+.++.|||.+|.|+.  .+-..+.+|+.|++|+||.|.+...|-..-..+.+|+.|.|.+..+.-. ....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45677888888888753  3444567888888888888888754432224566788888877766532 22345567777


Q ss_pred             CEEEccCccC
Q 004232          193 TFLSMRNNKL  202 (766)
Q Consensus       193 ~~L~L~~N~l  202 (766)
                      +.|+++.|++
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            7777777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=5.4e-08  Score=86.38  Aligned_cols=104  Identities=29%  Similarity=0.369  Sum_probs=50.9

Q ss_pred             CCEEecccccccccCCccc---cCCCCCCEEecccccCccCCCccCCCC-CCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          120 LRVLSLVSLGIWGSLPDKI---HRLYSLEYLDLSSNFLFGSVPPKISTM-VKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~---~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      +..|+|+++.+ +.+++..   .....|+..+|++|.+. .+|+.|... +-++.|+|++|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            44566666655 2334433   23334444566666654 344444322 24555555555554 344445555555555


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccC
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS  227 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  227 (766)
                      +++.|.+. ..|..+..|.+|..||..+|.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            55555554 34444444555555555555443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.08  E-value=1.1e-06  Score=101.57  Aligned_cols=239  Identities=14%  Similarity=0.182  Sum_probs=136.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+-+-+|.++.++-+.- ..|...++|......   ..+.+...++-.++-..+||-++...--+..       
T Consensus       803 ~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~-------  875 (1205)
T KOG0606|consen  803 PDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPC-------  875 (1205)
T ss_pred             CccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCC-------
Confidence            34566666778899999987752 234333444333221   2222333333334444456766654332111       


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                       ....+||++|..+|+|...++....   .+-.-.......+..+.+|||..   .+.|||++|.|+++..+++.+++||
T Consensus       876 -rsP~~L~~~~~~~~~~~Skl~~~~~---~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~  948 (1205)
T KOG0606|consen  876 -RSPLPLVGHYLNGGDLPSKLHNSGC---LSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDF  948 (1205)
T ss_pred             -CCCcchhhHHhccCCchhhhhcCCC---cccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCcc
Confidence             1357999999999999999886542   22222233445577889999996   4799999999999999999999999


Q ss_pred             CCCcccccc---ccc------cc--------------C---------CCCCCcc-------cCCCCCCCEeehhHHHHHH
Q 004232          638 GLSIVSEDI---NSV------GG--------------K---------QEDPNSW-------EMTKLEDDVFSFGFMLLES  678 (766)
Q Consensus       638 Gla~~~~~~---~~~------~~--------------~---------~~~~~~~-------~~~~~~~DV~SfGvil~El  678 (766)
                      |........   ...      +.              .         .+.+.+.       ......+|+|++|++++|.
T Consensus       949 ~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~ 1028 (1205)
T KOG0606|consen  949 GTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEV 1028 (1205)
T ss_pred             ccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhh
Confidence            943211100   000      00              0         0000000       1122357999999999999


Q ss_pred             hcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          679 VAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       679 ltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                      ++|.+|+....  -...+..+...    .+..|.    .+.+.-..+.+++.+-+..+|.+|-.|.
T Consensus      1029 l~g~pp~na~t--pq~~f~ni~~~----~~~~p~----g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1029 LTGIPPFNAET--PQQIFENILNR----DIPWPE----GPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hcCCCCCCCcc--hhhhhhccccC----CCCCCC----CccccChhhhhhhhhhhccCchhccCcc
Confidence            99999986322  22222222111    111111    1111112244566677778888886654

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.01  E-value=4.6e-05  Score=85.56  Aligned_cols=145  Identities=16%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhh------------------------------H----H----
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT------------------------------V----R----  524 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~------------------------------~----~----  524 (766)
                      ..|+. .-|+.++-|.||+|++.+|+.||||+....-...                              .    +    
T Consensus       126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~  204 (517)
T COG0661         126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLRE  204 (517)
T ss_pred             HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHH
Confidence            34543 5789999999999999999999999986531100                              0    1    


Q ss_pred             --HHHHHHHHHHhC----CCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHH
Q 004232          525 --NLKLRLDLLAKL----RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG  598 (766)
Q Consensus       525 --~~~~e~~~l~~l----~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~  598 (766)
                        ++.+|..-+.++    ++.-=+.+-.+|++-.       ....|+|||++|-.+.+...-...+  .+   +..++..
T Consensus       205 ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t-------~~~VLtmE~i~Gi~i~d~~~l~~~g--~d---~k~ia~~  272 (517)
T COG0661         205 ELDYRREAANAERFRENFKDDPDVYVPKVYWEYT-------TRRVLTMEWIDGIKISDIAALKSAG--ID---RKELAEL  272 (517)
T ss_pred             HhCHHHHHHHHHHHHHHcCCCCCeEeceeehhcc-------CCcEEEEEeeCCEecccHHHHHhcC--CC---HHHHHHH
Confidence              122333333333    2222233333444322       2458999999998888763222111  33   2223333


Q ss_pred             HHHHH-HHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          599 VAKAV-QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       599 ia~gL-~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      ++++. .-+-..   +++|.|..|-||+++.++..-.-|||+....
T Consensus       273 ~~~~f~~q~~~d---gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l  315 (517)
T COG0661         273 LVRAFLRQLLRD---GFFHADPHPGNILVRSDGRIVLLDFGIVGRL  315 (517)
T ss_pred             HHHHHHHHHHhc---CccccCCCccceEEecCCcEEEEcCcceecC
Confidence            22222 111112   7899999999999999999999999997443

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.01  E-value=5.4e-05  Score=75.64  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhCC--CCCcccccceeecCCCCCCcCcceEEEEEEccCCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHH
Q 004232          524 RNLKLRLDLLAKLR--HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG-NFRTHISENTPGKVLNWSERLAVLIGVA  600 (766)
Q Consensus       524 ~~~~~e~~~l~~l~--Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~G-sL~~~l~~~~~~~~l~~~~~~~i~~~ia  600 (766)
                      ....+|...+.++.  .=.+.+.+++.....+.    ....++|+|++++- +|.+++.....   .+...+..++.+++
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~----~~~s~lite~l~~~~~L~~~~~~~~~---~~~~~~~~ll~~l~  128 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGG----GYRSYLITEALPGAQDLRDLLQQWEQ---LDPSQRRELLRALA  128 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC----ceeEEEEEEeCCCcccHHHHHHhhcc---cchhhHHHHHHHHH
Confidence            35667777666664  33345566666553221    13568999999984 79988875322   44556778899999


Q ss_pred             HHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEecCCCCcc
Q 004232          601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHR---IAKLSDYGLSIV  642 (766)
Q Consensus       601 ~gL~yLH~~~~~~ivHrdlk~~NILld~~~---~~kl~DFGla~~  642 (766)
                      +.++-||..   +|+|+|+++.|||++.+.   .+.+.||+-++.
T Consensus       129 ~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  129 RLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            999999998   999999999999999776   789999987644

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.00  E-value=9.2e-05  Score=72.77  Aligned_cols=141  Identities=12%  Similarity=0.058  Sum_probs=99.1

Q ss_pred             eecCCceeEEEEEecCCceEEEEEccCCh------hhhHHHHHHHHHHHHhCCCCC--cccccceeecCCCCCCcCcceE
Q 004232          491 MGEGSYGKLYKGRLENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPH--LVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       491 lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~------~~~~~~~~~e~~~l~~l~Hpn--iv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      -|+||.+-|++-.+. |..+=+|+-...-      +.....|.+|...+.++..-+  +.+.+ ++....   ....-..
T Consensus        26 ~~rgG~SgV~r~~~~-g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k---~~~~~rA  100 (216)
T PRK09902         26 YRRNGMSGVQCVERN-GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVK---IEGEWRA  100 (216)
T ss_pred             cCCCCcceEEEEEeC-CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeec---cCCceEE
Confidence            478999999998765 4467788765221      223567889998888875322  33333 332110   1112357


Q ss_pred             EEEEEccCC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--EEEecCCC
Q 004232          563 FLVYEFMSN-GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--AKLSDYGL  639 (766)
Q Consensus       563 ~lv~Ey~~~-GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~--~kl~DFGl  639 (766)
                      +||+|-+++ -+|.+++.+... ...+...+..+..+++..++-||+.   ++.|+|+-+.||+++.++.  +++.||--
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~~~-~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk  176 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQHAV-SPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEK  176 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcCCc-CCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhc
Confidence            899997774 578888765422 2356677889999999999999998   8999999999999986555  89999965


Q ss_pred             C
Q 004232          640 S  640 (766)
Q Consensus       640 a  640 (766)
                      +
T Consensus       177 ~  177 (216)
T PRK09902        177 S  177 (216)
T ss_pred             c
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=3.1e-05  Score=83.39  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             ccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc-cCCCCCCccccCCCCC
Q 004232          138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN-KLAGPFPSSIQRISTL  216 (766)
Q Consensus       138 ~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L  216 (766)
                      +..+.+++.|++++|.|. .+|. +  -.+|++|.++++.--..+|+.+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            555788999999999876 4552 2  2358888887743334555543  246777777776 333 3443      34


Q ss_pred             CEEEccCCc
Q 004232          217 SDLDLSKNA  225 (766)
Q Consensus       217 ~~L~Ls~N~  225 (766)
                      +.|+++.|.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	766
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		5e-33
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		9e-33
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-19
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-18
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-18
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-18
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		6e-18
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-10
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		2e-09
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-09
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		6e-09
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		6e-09
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		5e-08
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		5e-08
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		6e-08
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		6e-08
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		6e-08
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		7e-08
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		7e-08
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		7e-08
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		7e-08
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-08
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-08
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		8e-08
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		8e-08
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		8e-08
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		9e-08
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		9e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		9e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		9e-08
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-07
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-07
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-07
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-07
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-07
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-07
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		2e-07
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-07
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-07
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		3e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		3e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		3e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		3e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		3e-07
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-07
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		3e-07
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		3e-07
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-07
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-07
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		5e-07
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		7e-07
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		7e-07
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		9e-07
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		9e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		9e-07
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		9e-07
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-06
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		1e-06
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-06
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		4e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		4e-06
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		4e-06
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		5e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		6e-06
1fvr_A	327	Tie2 Kinase Domain Length = 327		8e-06
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-06
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-06
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		9e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		9e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		9e-06
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		1e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		1e-05
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-05
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-05
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-05
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-05
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		2e-05
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		2e-05
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		2e-05
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-05
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-05
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-05
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-05
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-05
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		3e-05
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		3e-05
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		4e-05
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		4e-05
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		4e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		4e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-05
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		4e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		5e-05
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		5e-05
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		5e-05
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		5e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		5e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		5e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		5e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		5e-05
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		5e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		5e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		6e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		6e-05
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		6e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		7e-05
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		7e-05
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		7e-05
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		7e-05
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		8e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		8e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		9e-05
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		9e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		1e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		1e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		1e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		1e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		1e-04
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		1e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		1e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		1e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		1e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		1e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		1e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		1e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		1e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		1e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		1e-04
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-04
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		1e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		1e-04
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-04
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-04
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-04
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		2e-04
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		2e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		2e-04
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-04
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-04
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		3e-04
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		3e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		3e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		3e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		3e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		3e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		3e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-04
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		4e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		4e-04
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		4e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		4e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		4e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		4e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		4e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		5e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		5e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		5e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		5e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		5e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		5e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		5e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		5e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		6e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-04
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		7e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		7e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-04
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		7e-04
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		7e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		7e-04
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		7e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-04
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		7e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		7e-04
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		8e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		8e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		8e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		8e-04
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		8e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		8e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		8e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		8e-04
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		8e-04
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		8e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		8e-04
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		8e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		8e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		8e-04
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		9e-04
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		9e-04
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		9e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 32/304 (10%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXX 534
           L +L+EATNNFD   ++G G +GK+YKG L +G  VA++         +           
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-SENTPGKVLNWSERL 593
              HPHLV L+G C +         N++ L+Y++M NGN + H+   + P   ++W +RL
Sbjct: 91  FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS----- 648
            + IG A+ + +LHT  I    +  VK+ NILL+E+ + K++D+G+S    +++      
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXX 199
Query: 649 -VGGK--QEDPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---- 699
            V G     DP  +   +L +  DV+SFG +L E +   S      Q L  E+ +L    
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV---QSLPREMVNLAEWA 256
Query: 700 ---NSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQV 756
              ++    +++VDP +               A KC+   S  RPS  D+LW L+YA ++
Sbjct: 257 VESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
Query: 757 QETA 760
           QE+ 
Sbjct: 317 QESV 320

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 151/304 (49%), Gaps = 32/304 (10%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXX 534
           L +L+EATNNFD   ++G G +GK+YKG L +G  VA++         +           
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-SENTPGKVLNWSERL 593
              HPHLV L+G C +         N++ L+Y++M NGN + H+   + P   ++W +RL
Sbjct: 91  FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS----- 648
            + IG A+ + +LHT  I    +  VK+ NILL+E+ + K++D+G+S    ++       
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXX 199
Query: 649 -VGGK--QEDPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---- 699
            V G     DP  +   +L +  DV+SFG +L E +   S      Q L  E+ +L    
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIV---QSLPREMVNLAEWA 256
Query: 700 ---NSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQV 756
              ++    +++VDP +               A KC+   S  RPS  D+LW L+YA ++
Sbjct: 257 VESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
Query: 757 QETA 760
           QE+ 
Sbjct: 317 QESV 320

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 132/302 (43%), Gaps = 25/302 (8%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR-N 525
           L   + F+L EL+ A++NF    I+G G +GK+YKGRL +GT VA++ L   +       
Sbjct: 22  LGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQ 81
Query: 526 XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
                       H +L+ L G C+    R         LVY +M+NG+  + + E    +
Sbjct: 82  FQTEVEMISMAVHRNLLRLRGFCMTPTER--------LLVYPYMANGSVASCLRERPESQ 133
Query: 586 -VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+W +R  + +G A+ + +LH    P   +  VK  NILL+E   A + D+GL+ + +
Sbjct: 134 PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 193
Query: 645 DIN---------SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG------PSVAARKG 689
             +         ++G    +  S   +  + DVF +G MLLE + G        +A    
Sbjct: 194 YKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 253
Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWN 749
             L + +  L  ++  + LVD  +               A  C  S    RP   +++  
Sbjct: 254 VMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRM 313
Query: 750 LQ 751
           L+
Sbjct: 314 LE 315

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 130/302 (43%), Gaps = 25/302 (8%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR-N 525
           L   + F+L EL+ A++NF    I+G G +GK+YKGRL +G  VA++ L   +       
Sbjct: 14  LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 526 XXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
                       H +L+ L G C+    R         LVY +M+NG+  + + E    +
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCMTPTER--------LLVYPYMANGSVASCLRERPESQ 125
Query: 586 -VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+W +R  + +G A+ + +LH    P   +  VK  NILL+E   A + D+GL+ + +
Sbjct: 126 PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 185
Query: 645 DIN---------SVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG------PSVAARKG 689
             +          +G    +  S   +  + DVF +G MLLE + G        +A    
Sbjct: 186 YKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 245
Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWN 749
             L + +  L  ++  + LVD  +               A  C  S    RP   +++  
Sbjct: 246 VMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRM 305
Query: 750 LQ 751
           L+
Sbjct: 306 LE 307

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
            SF+  ELK  TNNFD   I      MGEG +G +YKG + N T+VA++ L +    T  
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
              +             H +LV LLG   DG   DD       LVY +M NG+    +S 
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DDLC-----LVYVYMPNGSLLDRLSC 123
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            + TP   L+W  R  +  G A  + FLH        +  +K+ NILL+E   AK+SD+G
Sbjct: 124 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 178
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
           L+  SE           + +      +    E+T  + D++SFG +LLE + G P+V   
Sbjct: 179 LARASEKFAQTVMXSRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 237
Query: 687 RKGQFL 692
           R+ Q L
Sbjct: 238 REPQLL 243

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
            SF+  ELK  TNNFD   I      MGEG +G +YKG + N T+VA++ L +    T  
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
              +             H +LV LLG   DG   DD       LVY +M NG+    +S 
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DDLC-----LVYVYMPNGSLLDRLSC 123
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            + TP   L+W  R  +  G A  + FLH        +  +K+ NILL+E   AK+SD+G
Sbjct: 124 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 178
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
           L+  SE           + +      +    E+T  + D++SFG +LLE + G P+V   
Sbjct: 179 LARASEKFAQTVMXXRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 237
Query: 687 RKGQFL 692
           R+ Q L
Sbjct: 238 REPQLL 243

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 117/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
            SF+  ELK  TNNFD   I      MGEG +G +YKG + N T+VA++ L +    T  
Sbjct: 7   HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 65
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
              +             H +LV LLG   DG   DD     + LVY +M NG+    +S 
Sbjct: 66  ELKQQFDQEIKVMAKCQHENLVELLGFSSDG---DD-----LCLVYVYMPNGSLLDRLSC 117
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            + TP   L+W  R  +  G A  + FLH        +  +K+ NILL+E   AK+SD+G
Sbjct: 118 LDGTPP--LSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 172
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
           L+  SE           + +      +    E+T  + D++SFG +LLE + G P+V   
Sbjct: 173 LARASEKFAQXVMXXRIVGTTAYMAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 231
Query: 687 RKGQFL 692
           R+ Q L
Sbjct: 232 REPQLL 237

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 39/246 (15%)
Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
            SF+  ELK  TNNFD   I       GEG +G +YKG + N T+VA++ L +    T  
Sbjct: 4   HSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 62
Query: 524 ---RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
              +             H +LV LLG   DG   DD     + LVY +  NG+    +S 
Sbjct: 63  ELKQQFDQEIKVXAKCQHENLVELLGFSSDG---DD-----LCLVYVYXPNGSLLDRLSC 114
Query: 580 -ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            + TP   L+W  R  +  G A  + FLH        +  +K+ NILL+E   AK+SD+G
Sbjct: 115 LDGTPP--LSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFG 169
Query: 639 LSIVSED----------INSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-PSV-AA 686
           L+  SE           + +      +    E+T  + D++SFG +LLE + G P+V   
Sbjct: 170 LARASEKFAQXVXXSRIVGTTAYXAPEALRGEITP-KSDIYSFGVVLLEIITGLPAVDEH 228
Query: 687 RKGQFL 692
           R+ Q L
Sbjct: 229 REPQLL 234

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 6/255 (2%)
Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
           + G +P  +    +L ++ LS+N L G +P  I  +  L  L L +N F+  IP      
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXXX 249
            SL +L +  N   G  P+++ + S     +                             
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 250 XXXXPKLPRGLVM--AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN 307
                +L R        +++  + G     +     +  LDMS+N L G  P  I S+P 
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS 367
           +  LNL  N  SGS+P  +     L   D+S+NKL G +P  +S  +    +    N LS
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Query: 368 SNVQNQHPESYCFEV 382
             +    PE   FE 
Sbjct: 715 GPI----PEMGQFET 725

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 132 GSLPDKIHRL-YSLEYLDLSSNFLFGSVPPKISTMVK--LQTLILDDNFFNNTIPNWFDS 188
           G LP+ +  L  SL  LDLSSN   G + P +    K  LQ L L +N F   IP    +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXXXXXXXXXX 248
              L  L +  N L+G  PSS+  +S L DL L  N +                      
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV----------- 465
Query: 249 XXXXXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNI 308
                 K    L++ F   N  +GEIP        L  + +S N L G  P  I  L N+
Sbjct: 466 ------KTLETLILDF---NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 309 SDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKF 361
           + L L++N FSG++P  L     L++ D++ N   G +P+ +  +S K    F
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 270 FSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG 329
           + G     +     +  LDMS+N L G  P  I S+P +  LNL  N  SGS+P  +   
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 330 GKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEV 382
             L   D+S+NKL G +P  +S  +    +    N LS  +    PE   FE 
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI----PEMGQFET 728

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 46/173 (26%)
Query: 182 IPNWFDSLPSLTFLSMRN-NKLAGPFPSSIQRISTLSDLDLSKNAIXXXXXXXXXXXXXX 240
           IP+   +LP L FL +   N L GP P +I +++ L  L                     
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL--------------------- 106
Query: 241 XXXXXXXXXXXXXPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
                                  ++++ + SG IP    Q+  L  LD S+NAL G  PP
Sbjct: 107 -----------------------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKL-VFFDISNNKLTGGLPSCLSN 352
           +I SLPN+  +    N+ SG++P +     KL     IS N+LTG +P   +N
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 37/221 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +N  +   +GEG++GK++     N         VA++ L  +     ++           
Sbjct: 13  HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL 72
Query: 537 XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTH------ISENTPGKV 586
            H H+V   G C++G        + + +V+E+M +G+     R H      ++E  P   
Sbjct: 73  QHEHIVKFYGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTE 124
Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSE 644
           L  S+ L +   +A  + +L +     F +  + T N L+ E+ + K+ D+G+S  + S 
Sbjct: 125 LTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYST 181
Query: 645 DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           D   VGG    P  W             E DV+S G +L E
Sbjct: 182 DYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWE 222

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 55/270 (20%)
Query: 436 SVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGS 495
           S  +   +G    ++ N +Y S+A               +  +K    +  +   +GEG+
Sbjct: 10  SPTEGKGSGLQGHIIENPQYFSDAC--------------VHHIKR--RDIVLKWELGEGA 53
Query: 496 YGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
           +GK++     N         VA++ L  + +   ++            H H+V   G C 
Sbjct: 54  FGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT 113
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER-----------LAVLI 597
           +G          + +V+E+M +G+    +  + P  K+L   E            LAV  
Sbjct: 114 EG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVAS 165
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQED 655
            VA  + +L  G+   F +  + T N L+ +  + K+ D+G+S  I S D   VGG+   
Sbjct: 166 QVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML 222
Query: 656 PNSW--------EMTKLEDDVFSFGFMLLE 677
           P  W             E DV+SFG +L E
Sbjct: 223 PIRWMPPESILYRKFTTESDVWSFGVVLWE 252

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 491 MGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           +GEG++GK++     N         VA++ L  + +   ++            H H+V  
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER----------- 592
            G C +G          + +V+E+M +G+    +  + P  K+L   E            
Sbjct: 86  FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 137
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
           LAV   VA  + +L  G+   F +  + T N L+ +  + K+ D+G+S  I S D   VG
Sbjct: 138 LAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 194
Query: 651 GKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           G+   P  W             E DV+SFG +L E
Sbjct: 195 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWE 229

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 491 MGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           +GEG++GK++     N         VA++ L  + +   ++            H H+V  
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSER----------- 592
            G C +G          + +V+E+M +G+    +  + P  K+L   E            
Sbjct: 80  FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 131
Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVG 650
           LAV   VA  + +L  G+   F +  + T N L+ +  + K+ D+G+S  I S D   VG
Sbjct: 132 LAVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 188
Query: 651 GKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           G+   P  W             E DV+SFG +L E
Sbjct: 189 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWE 223

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 72
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 73  VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 123
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 124 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 180
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWE 205

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 77  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 77  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 77  VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 128 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 491 MGEGSYGKLYKGRLE-NGTSVAIR-CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
           +G G++G+++ GRL  + T VA++ C  +                    HP++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
                        +++V E +  G+F T +   T G  L     L ++   A  +++L +
Sbjct: 182 TQK--------QPIYIVMELVQGGDFLTFL--RTEGARLRVKTLLQMVGDAAAGMEYLES 231
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED--INSVGGKQEDPNSWEMTKL-- 664
                  +  +   N L+ E  + K+SD+G+S    D    + GG ++ P  W   +   
Sbjct: 232 KCC---IHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALN 288
Query: 665 ------EDDVFSFGFMLLES 678
                 E DV+SFG +L E+
Sbjct: 289 YGRYSSESDVWSFGILLWET 308

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 491 MGEGSYGKLYKGRLE-NGTSVAIR-CLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHC 548
           +G G++G+++ GRL  + T VA++ C  +                    HP++V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
                        +++V E +  G+F T +   T G  L     L ++   A  +++L +
Sbjct: 182 TQK--------QPIYIVMELVQGGDFLTFL--RTEGARLRVKTLLQMVGDAAAGMEYLES 231
Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED--INSVGGKQEDPNSWEMTKL-- 664
                  +  +   N L+ E  + K+SD+G+S    D    + GG ++ P  W   +   
Sbjct: 232 KCC---IHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTAPEALN 288
Query: 665 ------EDDVFSFGFMLLES 678
                 E DV+SFG +L E+
Sbjct: 289 YGRYSSESDVWSFGILLWET 308

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 77  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 127
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 128 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 184
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 185 APESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 75
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 76  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 126
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 127 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 184 APESLAYNKFSIKSDVWAFGVLLWE 208

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 72
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 73  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 123
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 124 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 180
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 181 APESLAYNKFSIKSDVWAFGVLLWE 205

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F    T E+  +  + F          +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E+M NG+     R H ++ T  +++       +L G+A  +++L      GF +  + 
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GFVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GLS V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 74  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 125 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 72  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 122
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 123 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 74  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 125 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 72  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 122
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 123 AMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 179
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 180 APESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 26  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNL 84
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 85  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 135
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 136 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 192
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 193 APESLAYNKFSIKSDVWAFGVLLWE 217

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 73
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ 
Sbjct: 74  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISS 124
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWE 660
           A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W 
Sbjct: 125 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 181
Query: 661 MTK--------LEDDVFSFGFMLLE 677
             +        ++ DV++FG +L E
Sbjct: 182 APESLAYNKFSIKSDVWAFGVLLWE 206

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 23/204 (11%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+LV
Sbjct: 260 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLV 318
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            LLG C     R+       +++ EFM+ GN   ++ E    +V N    L +   ++ A
Sbjct: 319 QLLGVCT----REP----PFYIITEFMTYGNLLDYLRECNRQEV-NAVVLLYMATQISSA 369
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEM 661
           +++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + P  W  
Sbjct: 370 MEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA 426
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        ++ DV++FG +L E
Sbjct: 427 PESLAYNKFSIKSDVWAFGVLLWE 450

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 33/219 (15%)
Query: 474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXX 532
           +L++ +    +  M   +G G YG++Y+G  +  + +VA++ L       V         
Sbjct: 2   SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAV 60
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
                HP+LV LLG C     R+       +++ EFM+ GN   ++ E       N  E 
Sbjct: 61  MKEIKHPNLVQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEV 106
Query: 593 LAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDI 646
            AV++      ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D 
Sbjct: 107 SAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 163
Query: 647 NSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
            +     + P  W   +        ++ DV++FG +L E
Sbjct: 164 XTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 44/234 (18%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS-KKYTV 523
           A RSFT E   EA+    +  I+G G  G++  GRL    +    VAI+ L +   +   
Sbjct: 38  AGRSFTRE--IEASR-IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHIS 579
           R+            HP+++ L G    G            +V E+M NG+     RTH  
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTHDG 146
Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
           + T  +++       +L GV   +++L      G+ +  +   N+L++ + + K+SD+GL
Sbjct: 147 QFTIMQLVG------MLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGL 197
Query: 640 SIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
           S V ED       + GGK   P  W   +           DV+SFG ++ E +A
Sbjct: 198 SRVLEDDPDAAYTTTGGKI--PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 44/234 (18%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSS-KKYTV 523
           A RSFT E   EA+    +  I+G G  G++  GRL    +    VAI+ L +   +   
Sbjct: 38  AGRSFTRE--IEASR-IHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHIS 579
           R+            HP+++ L G    G            +V E+M NG+     RTH  
Sbjct: 95  RDFLSEASIMGQFDHPNIIRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTHDG 146
Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
           + T  +++       +L GV   +++L      G+ +  +   N+L++ + + K+SD+GL
Sbjct: 147 QFTIMQLVG------MLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGL 197
Query: 640 SIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
           S V ED       + GGK   P  W   +           DV+SFG ++ E +A
Sbjct: 198 SRVLEDDPDAAXTTTGGKI--PIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 49/233 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLPSSKKYTVR-NXXXXXXXXXX 535
           NN +    +GEG++G++++ R       E  T VA++ L       ++ +          
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 536 XXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV--------- 586
             +P++V LLG C  G          + L++E+M+ G+    +   +P  V         
Sbjct: 107 FDNPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 158
Query: 587 ------------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
                       L+ +E+L +   VA  + +L       F +  + T N L+ E+ + K+
Sbjct: 159 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKI 215
Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
           +D+GLS  I S D     G    P  W   +         E DV+++G +L E
Sbjct: 216 ADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 268

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F    T E+  +  + F          +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E+M NG+     R H ++ T  +++       +L G+A  +++L      G+ +  + 
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GLS V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 25/222 (11%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL--ENGTS--VAIRC--LPSSKKYTVRNXXX 528
           LE++    N   +  I+GEG +G + +G L  E+GTS  VA++   L +S +  +     
Sbjct: 26  LEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLS 85
Query: 529 XXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---SENTPGK 585
                    HP+++ LLG CI+   +    + K  ++  FM  G+  T++      T  K
Sbjct: 86  EAACMKDFSHPNVIRLLGVCIEMSSQ---GIPKPMVILPFMKYGDLHTYLLYSRLETGPK 142
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVS 643
            +     L  ++ +A  +++L       F +  +   N +L +     ++D+GLS  I S
Sbjct: 143 HIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYS 199
Query: 644 EDINSVGGKQEDPNSW-EMTKLED-------DVFSFGFMLLE 677
            D    G   + P  W  +  L D       DV++FG  + E
Sbjct: 200 GDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWE 241

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF-----------TLEELKEATN--NFDMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F           T+ E  +  +  N  +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E+M NG+     R H ++ T  +++       +L G+A  +++L      G+ +  + 
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GLS V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 16  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 75
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E+M NG+     R H ++ T  +++      
Sbjct: 76  HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 121
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 122 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 179 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 278
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 279 VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 324
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 325 TQISSAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 381
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 382 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 411

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 33  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 92
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E+M NG+     R H ++ T  +++      
Sbjct: 93  HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 138
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 139 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 195
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 196 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 233

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 40/216 (18%)
Query: 491 MGEGSYGKLYKGRLENGTS------VAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           +GEG++GK++     N +       VA++ L        ++            H H+V  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV-------------LNWSE 591
            G C DG        + + +V+E+M +G+    +  + P  +             L  S+
Sbjct: 83  YGVCGDG--------DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 134
Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSV 649
            L +   +A  + +L +     F +  + T N L+  + + K+ D+G+S  + S D   V
Sbjct: 135 MLHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRV 191
Query: 650 GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           GG    P  W             E DV+SFG +L E
Sbjct: 192 GGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE 227

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 76
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 77  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 122
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 123 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 179
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 180 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXX 531
            +L++ +    +  M   +G G YG++Y+G  +  + +VA++ L       V        
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAA 59
Query: 532 XXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
                 HP+LV LLG C     R+       +++ EFM+ GN   ++ E       N  E
Sbjct: 60  VMKEIKHPNLVQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQE 105
Query: 592 RLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSED 645
             AV++      ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D
Sbjct: 106 VSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 162
Query: 646 INSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
             +     + P  W   +        ++ DV++FG +L E
Sbjct: 163 TFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 72  VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 72  VQLLGVCT----REP----PFYIIIEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 72  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHL 541
            +  M   +G G YG++Y+G  +  + +VA++ L       V              HP+L
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNL 71
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI---- 597
           V LLG C     R+       +++ EFM+ GN   ++ E       N  E  AV++    
Sbjct: 72  VQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQEVSAVVLLYMA 117
Query: 598 -GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
             ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 118 TQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174
Query: 656 PNSWEMTK--------LEDDVFSFGFMLLE 677
           P  W   +        ++ DV++FG +L E
Sbjct: 175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
           +  ++G G +G++  GRL+       +VAI+ L     +   R+            HP++
Sbjct: 47  IERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNV 106
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERLAVLI 597
           V L G    G          V +V EFM NG      R H  + T  +++       +L 
Sbjct: 107 VHLEGVVTRG--------KPVMIVIEFMENGALDAFLRKHDGQFTVIQLV------GMLR 152
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK 652
           G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       + GGK
Sbjct: 153 GIAAGMRYLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGK 209
Query: 653 ----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
                  P + +  K     DV+S+G ++ E ++
Sbjct: 210 IPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 243

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E+M NG+     R H ++ T  +++      
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E+M NG+     R H ++ T  +++      
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 43  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 102
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E+M NG+     R H ++ T  +++      
Sbjct: 103 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDAQFTVIQLV------ 148
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 149 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 205
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 206 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 243

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F    T E+  +  + F          +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E+M NG+     R H ++ T  +++       +L G+A  +++L      G+ +  + 
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GL+ V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCLPSSKKYTVRNXXXXXX 531
            +L++ +    +  M   +G G +G++Y+G  +  + +VA++ L       V        
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAA 59
Query: 532 XXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
                 HP+LV LLG C     R+       +++ EFM+ GN   ++ E       N  E
Sbjct: 60  VMKEIKHPNLVQLLGVCT----REP----PFYIITEFMTYGNLLDYLRE------CNRQE 105
Query: 592 RLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSED 645
             AV++      ++ A+++L       F +  +   N L+ E+ + K++D+GLS +++ D
Sbjct: 106 VSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 162
Query: 646 INSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
             +     + P  W   +        ++ DV++FG +L E
Sbjct: 163 TXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F    T E+  +  + F          +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E+M NG+     R H ++ T  +++       +L G+A  +++L      G+ +  + 
Sbjct: 124 VTEYMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSD---MGYVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GL  V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 111/286 (38%), Gaps = 55/286 (19%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR--NXXXXXXXXXXXXHPHL 541
           + ++   +G GS+G +++    +G+ VA++ L     +  R               HP++
Sbjct: 38  DLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V  +G               + +V E++S G+    + ++   + L+   RL++   VAK
Sbjct: 97  VLFMGAVTQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI----NSVGGKQEDPN 657
            + +LH    P    N +K+ N+L+++    K+ D+GLS +         S  G  E   
Sbjct: 149 GMNYLHNRNPPIVHRN-LKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPE--- 204
Query: 658 SW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
            W        E +  + DV+SFG +L E              LQ+   +LN  +      
Sbjct: 205 -WMAPEVLRDEPSNEKSDVYSFGVILWELAT-----------LQQPWGNLNPAQ------ 246
Query: 710 DPVVMATXXXXXXXXXXXXANK--------CICSESWSRPSFEDIL 747
             VV A              N         C  +E W RPSF  I+
Sbjct: 247 --VVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 16  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 75
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E M NG+     R H ++ T  +++      
Sbjct: 76  HPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDAQFTVIQLV------ 121
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 122 GMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 178
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 179 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G +  G    G  VA++C+ +    T +             H +LV LLG  ++
Sbjct: 201 IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 257
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAKAVQFLHTG 609
             G        +++V E+M+ G+   ++   + G+ VL     L   + V +A+++L   
Sbjct: 258 EKG-------GLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 308
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL-- 664
               F +  +   N+L++E  +AK+SD+GL+     ++D   +  K   P +    K   
Sbjct: 309 ---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 365
Query: 665 EDDVFSFGFMLLE 677
           + DV+SFG +L E
Sbjct: 366 KSDVWSFGILLWE 378

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G +  G    G  VA++C+ +    T +             H +LV LLG  ++
Sbjct: 14  IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 70
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
             G        +++V E+M+ G+   ++       VL     L   + V +A+++L    
Sbjct: 71  EKG-------GLYIVTEYMAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGN- 121
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL--E 665
              F +  +   N+L++E  +AK+SD+GL+     ++D   +  K   P +    K   +
Sbjct: 122 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTK 179
Query: 666 DDVFSFGFMLLE 677
            DV+SFG +L E
Sbjct: 180 SDVWSFGILLWE 191

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGT-SVAIRCL 515
           S    LG+E L      ++++ +    +  M   +G G YG++Y G  +  + +VA++ L
Sbjct: 9   SSGVDLGTENL---YFQSMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTL 65
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                  V              HP+LV LLG C              ++V E+M  GN  
Sbjct: 66  -KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT--------LEPPFYIVTEYMPYGNLL 116
Query: 576 THISENTPGKVLNWSERLAVLI-----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR 630
            ++ E       N  E  AV++      ++ A+++L       F +  +   N L+ E+ 
Sbjct: 117 DYLRE------CNREEVTAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENH 167
Query: 631 IAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
           + K++D+GLS +++ D  +     + P  W   +        ++ DV++FG +L E
Sbjct: 168 VVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWE 223

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 21/193 (10%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G +  G    G  VA++C+ +    T +             H +LV LLG  ++
Sbjct: 29  IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 85
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLNWSERLAVLIGVAKAVQFLHTG 609
             G        +++V E+M+ G+   ++   + G+ VL     L   + V +A+++L   
Sbjct: 86  EKG-------GLYIVTEYMAKGSLVDYL--RSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 136
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL-- 664
               F +  +   N+L++E  +AK+SD+GL+     ++D   +  K   P +    K   
Sbjct: 137 ---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 193
Query: 665 EDDVFSFGFMLLE 677
           + DV+SFG +L E
Sbjct: 194 KSDVWSFGILLWE 206

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXX 537
            N  +  ++G G +G++  GRL+       SVAI+ L     +   R+            
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKVLNWSERL 593
           HP+++ L G               V +V E M NG+     R H ++ T  +++      
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDAQFTVIQLV------ 150
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INS 648
            +L G+A  +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       +
Sbjct: 151 GMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTT 207
Query: 649 VGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVA 680
            GGK       P +    K     DV+S+G +L E ++
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G+++ G   N T VA++ L      +V+             H  LV L      
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRL------ 73
Query: 551 GGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG----VAKA 602
                 YAV      ++++ E+M+ G+    +  +  GKVL     L  LI     +A+ 
Sbjct: 74  ------YAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEG 122
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWE 660
           + ++       + +  ++  N+L++E  + K++D+GL+ V ED N    ++  + P  W 
Sbjct: 123 MAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIED-NEYTAREGAKFPIKWT 178
Query: 661 MTK--------LEDDVFSFGFMLLESV 679
             +        ++ DV+SFG +L E V
Sbjct: 179 APEAINFGCFTIKSDVWSFGILLYEIV 205

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 44/279 (15%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
           +  ++G G +G++  GRL+        VAI+ L     +   R+            HP++
Sbjct: 26  IERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI 85
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           + L G               V +V E+M NG+  T + +N  G+     + + +L G++ 
Sbjct: 86  IHLEGVVTKS--------KPVMIVTEYMENGSLDTFLKKND-GQ-FTVIQLVGMLRGISA 135
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQEDP 656
            +++L      G+ +  +   NIL+N + + K+SD+GLS V ED       + GGK   P
Sbjct: 136 GMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI--P 190
Query: 657 NSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
             W   +           DV+S+G ++ E V+       +  +     D + + E   RL
Sbjct: 191 IRWTAPEAIAFRKFTSASDVWSYGIVMWEVVS----YGERPYWEMTNQDVIKAVEEGYRL 246
Query: 709 VDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDIL 747
             P+                   C   E  SRP F++I+
Sbjct: 247 PSPMDCPAALYQLML-------DCWQKERNSRPKFDEIV 278

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 47/282 (16%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVR--NXXXXXXXXXXXXHPHL 541
           + ++   +G GS+G +++    +G+ VA++ L     +  R               HP++
Sbjct: 38  DLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V  +G               + +V E++S G+    + ++   + L+   RL++   VAK
Sbjct: 97  VLFMGAVTQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW-- 659
            + +LH    P   +  +K+ N+L+++    K+ D+GLS +                W  
Sbjct: 149 GMNYLHNRN-PPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMA 207
Query: 660 ------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
                 E +  + DV+SFG +L E              LQ+   +LN  +        VV
Sbjct: 208 PEVLRDEPSNEKSDVYSFGVILWELAT-----------LQQPWGNLNPAQ--------VV 248
Query: 714 MATXXXXXXXXXXXXANK--------CICSESWSRPSFEDIL 747
            A              N         C  +E W RPSF  I+
Sbjct: 249 AAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 44/267 (16%)
Query: 473 FTLEELKEATNNF----DMSAI-----MGEGSYGKLYKGRLE----NGTSVAIRCLPSS- 518
           FT E+  EA   F    D+S +     +G G +G++  G L+        VAI+ L S  
Sbjct: 14  FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 519 KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI 578
            +   R+            HP+++ L G               V ++ EFM NG+  + +
Sbjct: 74  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS--------TPVMIITEFMENGSLDSFL 125
Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            +N  G+     + + +L G+A  +++L       + +  +   NIL+N + + K+SD+G
Sbjct: 126 RQND-GQ-FTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFG 180
Query: 639 LSIVSED-------INSVGGK----QEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVA 685
           LS   ED        +++GGK       P + +  K     DV+S+G ++ E ++     
Sbjct: 181 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS----Y 236
Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPV 712
             +  +     D +N+ E   RL  P+
Sbjct: 237 GERPYWDMTNQDVINAIEQDYRLPPPM 263

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G+++ G   N T VA++ L      +V+             H  LV L      
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRL------ 72
Query: 551 GGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG----VAKA 602
                 YAV      ++++ EFM+ G+    +  +  GKVL     L  LI     +A+ 
Sbjct: 73  ------YAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEG 121
Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWE 660
           + ++       + +  ++  N+L++E  + K++D+GL+ V ED N    ++  + P  W 
Sbjct: 122 MAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIED-NEYTAREGAKFPIKWT 177
Query: 661 MTK--------LEDDVFSFGFMLLESV 679
             +        ++ +V+SFG +L E V
Sbjct: 178 APEAINFGCFTIKSNVWSFGILLYEIV 204

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
            N  +   +GEG +GK+ K       GR    T+VA++ L   +    +R+         
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
              HPH++ L G C   G         + L+ E+   G+ R  + E+    PG +     
Sbjct: 82  QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                L+  +  A+ +G        +++ +Q+L         +  +   NIL+ E R  K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---SLVHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
           +SD+GLS  +  ED      +   P  W         +   + DV+SFG +L E V 
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 50/251 (19%)
Query: 463 GSEGLPACRSF----TLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE---- 505
           G   LP  R+F    T E+  +  + F          +  ++G G +G++  GRL+    
Sbjct: 12  GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 506 NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFL 564
              SVAI+ L     +   R+            HP+++ L G               V +
Sbjct: 72  KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMI 123
Query: 565 VYEFMSNGNF----RTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK 620
           V E M NG+     R H ++ T  +++       +L G+A  +++L      G  +  + 
Sbjct: 124 VTEXMENGSLDSFLRKHDAQFTVIQLV------GMLRGIASGMKYLSDM---GAVHRDLA 174
Query: 621 TNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK----QEDPNSWEMTKL--EDDVF 669
             NIL+N + + K+SD+GLS V ED       + GGK       P +    K     DV+
Sbjct: 175 ARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVW 234
Query: 670 SFGFMLLESVA 680
           S+G +L E ++
Sbjct: 235 SYGIVLWEVMS 245

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
            N  +   +GEG +GK+ K       GR    T+VA++ L   +    +R+         
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
              HPH++ L G C   G         + L+ E+   G+ R  + E+    PG +     
Sbjct: 82  QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                L+  +  A+ +G        +++ +Q+L    +    +  +   NIL+ E R  K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
           +SD+GLS  +  ED      +   P  W         +   + DV+SFG +L E V 
Sbjct: 191 ISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           +GEG +GK+   R +      G  VA++ L P S    + +            H ++V  
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
            G C + GG      N + L+ EF+ +G+ + ++ +N     +N  ++L   + + K + 
Sbjct: 89  KGICTEDGG------NGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMD 140
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE---DINSVGGKQEDPNSWEM 661
           +L +     + +  +   N+L+      K+ D+GL+   E   +  +V   ++ P  W  
Sbjct: 141 YLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 197
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG  L E
Sbjct: 198 PECLMQSKFYIASDVWSFGVTLHE 221

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           +GEG +GK+   R +      G  VA++ L P S    + +            H ++V  
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
            G C + GG      N + L+ EF+ +G+ + ++ +N     +N  ++L   + + K + 
Sbjct: 77  KGICTEDGG------NGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMD 128
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE---DINSVGGKQEDPNSWEM 661
           +L +     + +  +   N+L+      K+ D+GL+   E   +  +V   ++ P  W  
Sbjct: 129 YLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG  L E
Sbjct: 186 PECLMQSKFYIASDVWSFGVTLHE 209

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G +  G    G  VA++C+ +    T +             H +LV LLG  ++
Sbjct: 20  IGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE 76
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
             G        +++V E+M+ G+   ++       VL     L   + V +A+++L    
Sbjct: 77  EKG-------GLYIVTEYMAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN- 127
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLSI---VSEDINSVGGKQEDPNSWEMTKL--E 665
              F +  +   N+L++E  +AK+SD+GL+     ++D   +  K   P +        +
Sbjct: 128 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAAFSTK 185
Query: 666 DDVFSFGFMLLE 677
            DV+SFG +L E
Sbjct: 186 SDVWSFGILLWE 197

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 51/237 (21%)
Query: 483 NNFDMSAIMGEGSYGKLYK-------GRLENGTSVAIRCLPS-SKKYTVRNXXXXXXXXX 534
            N  +   +GEG +GK+ K       GR    T+VA++ L   +    +R+         
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLK 81
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT---PGKV----- 586
              HPH++ L G C   G         + L+ E+   G+ R  + E+    PG +     
Sbjct: 82  QVNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGS 133
Query: 587 -----LNWSERLAVLIG--------VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                L+  +  A+ +G        +++ +Q+L    +    +  +   NIL+ E R  K
Sbjct: 134 RNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA 680
           +SD+GLS  +  ED      +   P  W         +   + DV+SFG +L E V 
Sbjct: 191 ISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 11/169 (6%)
Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXX 533
           L  L++    F++  ++G G+YG++YKGR ++ G   AI+ +  +               
Sbjct: 16  LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLK 75
Query: 534 XXXXHPHLVCLLGHCIDGG--GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
               H ++    G  I     G DD    +++LV EF   G+  T + +NT G  L    
Sbjct: 76  KYSHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEEW 130
Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              +   + + +  LH   +    +  +K  N+LL E+   KL D+G+S
Sbjct: 131 IAYICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 176

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 98  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 148
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  ++ ++ +SV  K   + P  W 
Sbjct: 149 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWM 205
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 206 ALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 11  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 69
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +   T GK L   + + +   +
Sbjct: 70  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 116
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 117 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 172
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 173 KWTAPEAALYGRFTIKSDVWSFGILLTE 200

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
           N+     ++GEG++G++ K R++         +   K+Y  ++                 
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
           HP+++ LLG C   G         ++L  E+  +GN      ++ + E  P         
Sbjct: 85  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 136
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+  + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   E
Sbjct: 137 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 193
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
             +    G+   P  W         +     DV+S+G +L E  S+ G          L 
Sbjct: 194 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 251
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
           E+L      E      D V                  +C   + + RPSF  IL +L   
Sbjct: 252 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 298
Query: 754 AQVQETADN 762
            + ++T  N
Sbjct: 299 LEERKTYVN 307

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 97  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 148 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 96  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 155
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 156 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 206
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 207 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 263
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 264 ALESLQTQKFTTKSDVWSFGVLLWE 288

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 95  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 145
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 146 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 202
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 203 ALESLQTQKFTTKSDVWSFGVLLWE 227

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
           N+     ++GEG++G++ K R++         +   K+Y  ++                 
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
           HP+++ LLG C   G         ++L  E+  +GN      ++ + E  P         
Sbjct: 82  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 133
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+  + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   E
Sbjct: 134 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGLSRGQE 190
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
             +    G+   P  W         +     DV+S+G +L E  S+ G          L 
Sbjct: 191 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 248
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
           E+L      E      D V                  +C   + + RPSF  IL +L   
Sbjct: 249 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 295
Query: 754 AQVQETADN 762
            + ++T  N
Sbjct: 296 LEERKTYVN 304

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G+++ G     T VAI+ L      +               H  LV L      
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLVQL------ 327
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+MS G+    +   T GK L   + + +   +A  + ++ 
Sbjct: 328 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE 380
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 381 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 436
Query: 664 ------LEDDVFSFGFMLLE 677
                 ++ DV+SFG +L E
Sbjct: 437 LYGRFTIKSDVWSFGILLTE 456

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 97  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 148 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 98  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 148
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 149 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 205
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 206 ALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 42  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 101
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 102 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 152
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           FL +     F +  +   N +L+E    K++D+GL+  +  ++ +SV  K   + P  W 
Sbjct: 153 FLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 209
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 210 ALESLQTQKFTTKSDVWSFGVLLWE 234

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 242
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +   T GK L   + + +   +
Sbjct: 243 QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 289
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 290 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 345
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTE 373

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G+++ G     T VAI+ L      +               H  LV L      
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQL------ 244
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+MS G+    +   T GK L   + + +   +A  + ++ 
Sbjct: 245 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVE 297
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 298 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPIKWTAPEAA 353
Query: 664 ------LEDDVFSFGFMLLE 677
                 ++ DV+SFG +L E
Sbjct: 354 LYGRFTIKSDVWSFGILLTE 373

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 55/309 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-----X 537
           N+     ++GEG++G++ K R++         +   K+Y  ++                 
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-----RTHISENTPG-------- 584
           HP+++ LLG C   G         ++L  E+  +GN      ++ + E  P         
Sbjct: 75  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 126
Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+  + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   E
Sbjct: 127 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 183
Query: 645 -DINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLE--SVAGPSVAARKGQFLQ 693
             +    G+   P  W         +     DV+S+G +L E  S+ G          L 
Sbjct: 184 VYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY 241
Query: 694 EELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYA 753
           E+L      E      D V                  +C   + + RPSF  IL +L   
Sbjct: 242 EKLPQGYRLEKPLNCDDEVY-------------DLMRQCWREKPYERPSFAQILVSLNRM 288
Query: 754 AQVQETADN 762
            + ++T  N
Sbjct: 289 LEERKTYVN 297

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 16/163 (9%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXX 537
           K+    FD+   +GEGSYG +YK    E G  VAI+ +P      ++             
Sbjct: 25  KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--LQEIIKEISIMQQCD 82
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
            PH+V   G          +    +++V E+   G+    I      K L   E   +L 
Sbjct: 83  SPHVVKYYGSY--------FKNTDLWIVMEYCGAGSVSDII--RLRNKTLTEDEIATILQ 132
Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              K +++LH        +  +K  NILLN    AKL+D+G++
Sbjct: 133 STLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 242
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +   T GK L   + + +   +
Sbjct: 243 QL------------YAVVSEEPIYIVGEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 289
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 290 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 345
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 346 KWTAPEAALYGRFTIKSDVWSFGILLTE 373

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV+EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 74  QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 181 YSSKSDVWSFGVLMWE 196

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV+EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 72  QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 121
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 122 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 178
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 179 YSSKSDVWSFGVLMWE 194

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV+EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 77  QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 126
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 127 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 183
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 184 YSSKSDVWSFGVLMWE 199

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 8   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 66
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     + +V E+MS G+    +   T GK L   + + +   +
Sbjct: 67  QL------------YAVVSEEPIXIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQI 113
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 114 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEXTARQGAKFPI 169
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 170 KWTAPEAALYGRFTIKSDVWSFGILLTE 197

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
           A +  E   A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+
Sbjct: 2   ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 61
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
            +   +S +  +              H H+V LLG    G            ++ E M+ 
Sbjct: 62  TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 112
Query: 572 GNFRTHISENTPGKVLN-------WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI 624
           G+ ++++    P    N        S+ + +   +A  + +L+      F +  +   N 
Sbjct: 113 GDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
           ++ E    K+ D+G++  I   D    GGK   P  W   + L+D       DV+SFG +
Sbjct: 170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229
Query: 675 LLE 677
           L E
Sbjct: 230 LWE 232

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVIEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEXTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVIEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTS-VAIRCLP-----SSKKYTVRNXXXXX 530
           ++K     ++    +GEG +  +YK R +N    VAI+ +       +K    R      
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 531 XXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
                  HP+++ LL    D  G      + + LV++FM   +    I +N+   VL  S
Sbjct: 64  KLLQELSHPNIIGLL----DAFGHK----SNISLVFDFMET-DLEVIIKDNS--LVLTPS 112
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              A ++   + +++LH   I    +  +K NN+LL+E+ + KL+D+GL+
Sbjct: 113 HIKAYMLMTLQGLEYLHQHWI---LHRDLKPNNLLLDENGVLKLADFGLA 159

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKEGS-MSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV+EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 94  QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 143
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 144 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 200
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 201 YSSKSDVWSFGVLMWE 216

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 9   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 67
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 68  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 114
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 115 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 170
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 171 KWTAPEAALYGRFTIKSDVWSFGILLTE 198

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 7   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 65
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 66  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 112
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 113 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 168
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 169 KWTAPEAALYGRFTIKSDVWSFGILLTE 196

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKIRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNXXXXXXXXXXXXHPHL 541
           +  ++G G +G++  G L+        VAI+ L S   +   R+            HP++
Sbjct: 11  IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 70
Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           + L G               V ++ EFM NG+  + + +N  G+     + + +L G+A 
Sbjct: 71  IHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQND-GQ-FTVIQLVGMLRGIAA 120
Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-------INSVGGK-- 652
            +++L       + +  +   NIL+N + + K+SD+GLS   ED        +++GGK  
Sbjct: 121 GMKYLADM---NYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIP 177
Query: 653 --QEDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
                P + +  K     DV+S+G ++ E ++       +  +     D +N+ E   RL
Sbjct: 178 IRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS----YGERPYWDMTNQDVINAIEQDYRL 233
Query: 709 VDPV 712
             P+
Sbjct: 234 PPPM 237

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 73
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+M+ G+    +   T GK L   + + +   +
Sbjct: 74  QL------------YAVVSEEPIYIVTEYMNKGSLLDFLKGET-GKYLRLPQLVDMSAQI 120
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 121 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 176
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTE 204

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVCEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 39/217 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK----KYTVRNXXXXXXXXXXXXHPHLV 542
           +  I+G G +GK+Y+     G  VA++            T+ N            HP+++
Sbjct: 11  LEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNII 69
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN--TPGKVLNWSERLAVLIGVA 600
            L G C+            + LV EF   G     +S     P  ++NW+      + +A
Sbjct: 70  ALRGVCLKE--------PNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA------VQIA 115
Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNE--------HRIAKLSDYGLSIVSEDINSVGGK 652
           + + +LH   I    +  +K++NIL+ +        ++I K++D+GL+   E   +    
Sbjct: 116 RGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA--REWHRTTKMS 173
Query: 653 QEDPNSW--------EMTKLEDDVFSFGFMLLESVAG 681
                +W         M     DV+S+G +L E + G
Sbjct: 174 AAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTG 210

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV+EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 74  QA--------PICLVFEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAS 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 180
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 181 YSSKSDVWSFGVLMWE 196

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
           A +  E   A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+
Sbjct: 2   ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 61
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
            +   +S +  +              H H+V LLG    G            ++ E M+ 
Sbjct: 62  TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 112
Query: 572 GNFRTHIS------ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNI 624
           G+ ++++       EN P        ++  + G +A  + +L+      F +  +   N 
Sbjct: 113 GDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
           ++ E    K+ D+G++  I   D    GGK   P  W   + L+D       DV+SFG +
Sbjct: 170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 229
Query: 675 LLE 677
           L E
Sbjct: 230 LWE 232

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 73
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+M+ G+    +   T GK L   + + +   +
Sbjct: 74  QL------------YAVVSEEPIYIVTEYMNKGSLLDFLKGET-GKYLRLPQLVDMSAQI 120
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 121 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEWTARQGAKFPI 176
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 177 KWTAPEAALYGRFTIKSDVWSFGILLTE 204

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 36/227 (15%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
           E+ +   NN      +G G++GK+ +      G+ +    VA++ L S+     +     
Sbjct: 39  EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG---NFRTHISE---- 580
                     H ++V LLG C  GG         V ++ E+   G   NF    +E    
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKAEADLD 150
Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              G+ L   + L     VA+ + FL +       +  V   N+LL    +AK+ D+GL+
Sbjct: 151 KEDGRPLELRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLA 207
Query: 641 --IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
             I+++    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 208 RDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 254

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 96  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 146
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 147 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWM 203
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 38/230 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
           E+ +   NN      +G G++GK+ +      G+ +    VA++ L S+     +     
Sbjct: 39  EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
                     H ++V LLG C  GG         V ++ E+   G+    +   +  +VL
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKS--RVL 148
Query: 588 NWSERLAVLIGVAKAVQFLH--TGVIPGF--------FNNRVKTNNILLNEHRIAKLSDY 637
                 A+    A     LH  + V  G          +  V   N+LL    +AK+ D+
Sbjct: 149 ETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDF 208
Query: 638 GLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
           GL+  I+++    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 209 GLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 258

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 36/227 (15%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
           E+ +   NN      +G G++GK+ +      G+ +    VA++ L S+     +     
Sbjct: 31  EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 90
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG---NFRTHISE---- 580
                     H ++V LLG C  GG         V ++ E+   G   NF    +E    
Sbjct: 91  ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKAEADLD 142
Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              G+ L   + L     VA+ + FL +       +  V   N+LL    +AK+ D+GL+
Sbjct: 143 KEDGRPLELRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGDFGLA 199
Query: 641 --IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
             I+++    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 200 RDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 246

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 56  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 115
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 116 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 166
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 167 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 223
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 224 ALESLQTQKFTTKSDVWSFGVLLWE 248

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G     +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVMEYMSKGCLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 29  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 88
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 89  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 139
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 140 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 196
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 197 ALESLQTQKFTTKSDVWSFGVLLWE 221

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 46/237 (19%)
Query: 473 FTLEELKEATNNF---------DMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK 519
           FT E+  +A   F          +  ++G G +G++  GRL+        VAI+ L +  
Sbjct: 10  FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG- 68
Query: 520 KYT---VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT 576
            YT    R+            HP+++ L G               V ++ E+M NG+   
Sbjct: 69  -YTDKQRRDFLSEASIMGQFDHPNIIHLEGVVT--------KCKPVMIITEYMENGSLDA 119
Query: 577 HISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
            + +N  G+     + + +L G+   +++L         +  +   NIL+N + + K+SD
Sbjct: 120 FLRKND-GR-FTVIQLVGMLRGIGSGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSD 174
Query: 637 YGLSIVSED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
           +G+S V ED       + GGK   P  W   +           DV+S+G ++ E ++
Sbjct: 175 FGMSRVLEDDPEAAYTTRGGKI--PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 229

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 460 AKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIR 513
           A +  E   A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+
Sbjct: 24  ASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIK 83
Query: 514 CL--PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN 571
            +   +S +  +              H H+V LLG    G            ++ E M+ 
Sbjct: 84  TVNEAASMRERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTR 134
Query: 572 GNFRTHIS------ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNI 624
           G+ ++++       EN P        ++  + G +A  + +L+      F +  +   N 
Sbjct: 135 GDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 191
Query: 625 LLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFM 674
           ++ E    K+ D+G++  I   D    GGK   P  W   + L+D       DV+SFG +
Sbjct: 192 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 251
Query: 675 LLE 677
           L E
Sbjct: 252 LWE 254

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   F  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 2   AADVFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 61
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 62  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 112
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                EN P        ++  + G +A  + +L+      F +  +   N ++ E    K
Sbjct: 113 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 169
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 170 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 223

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 97  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 148 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 93
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 94  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 144
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 145 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 201
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 202 ALESLQTQKFTTKSDVWSFGVLLWE 226

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 55  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 114
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 115 LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 165
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 166 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 222
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 223 ALESLQTQKFTTKSDVWSFGVLLWE 247

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ EF+  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 81  GVCYSAGRRN------LKLIMEFLPYGSLREYLQKHK--ERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 42/230 (18%)
Query: 476 EELKEATNNFDMSAI-----MGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYT---V 523
           + ++E     D S I     +G G +G++  GRL+        VAI+ L +   YT    
Sbjct: 2   QAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG--YTDKQR 59
Query: 524 RNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
           R+            HP+++ L G               V ++ E+M NG+    + +N  
Sbjct: 60  RDFLSEASIMGQFDHPNIIHLEGVVT--------KCKPVMIITEYMENGSLDAFLRKND- 110
Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
           G+     + + +L G+   +++L       + +  +   NIL+N + + K+SD+G+S V 
Sbjct: 111 GR-FTVIQLVGMLRGIGSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVL 166
Query: 644 ED-----INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
           ED       + GGK   P  W   +           DV+S+G ++ E ++
Sbjct: 167 EDDPEAAYTTRGGKI--PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 214

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G     +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVTEYMSKGCLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 96  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 146
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 147 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 203
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 32  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 91
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 92  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 142
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 143 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 199
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 200 ALESLQTQKFTTKSDVWSFGVLLWE 224

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 97  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 147
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 148 YLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 204
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 27/227 (11%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY 521
           LGS+  P+         +    +      +G G +G +  G+      VAI+ +      
Sbjct: 3   LGSKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM- 61
Query: 522 TVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
           +               H  LV L G C             +F++ E+M+NG    ++ E 
Sbjct: 62  SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RPIFIITEYMANGCLLNYLREM 113
Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS- 640
                    + L +   V +A+++L +     F +  +   N L+N+  + K+SD+GLS 
Sbjct: 114 R--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR 168
Query: 641 --IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE 677
             +  E+ +SVG K   P  W   ++        + D+++FG ++ E
Sbjct: 169 YVLDDEETSSVGSKF--PVRWSPPEVLMYSKFSSKSDIWAFGVLMWE 213

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 490 IMGEGSYGKLYKGRLENGTSVAIRC-LPSSKKYT----VRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G +Y G L +     I C + S  + T    V              HP+++ L
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T    +   + +   + VAK ++
Sbjct: 95  LGICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMK 145
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ--EDPNSW- 659
           +L +     F +  +   N +L+E    K++D+GL+  +  ++  SV  K   + P  W 
Sbjct: 146 YLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWM 202
Query: 660 -------EMTKLEDDVFSFGFMLLE 677
                  +    + DV+SFG +L E
Sbjct: 203 ALESLQTQKFTTKSDVWSFGVLLWE 227

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +               H  LV
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLV 76
Query: 543 CLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
            L            YAV     +++V E+MS G+    +     GK L   + + +   +
Sbjct: 77  QL------------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQI 123
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPN 657
           A  + ++       + +  +   NIL+ E+ + K++D+GL+ + ED N    +Q  + P 
Sbjct: 124 ASGMAYVERM---NYVHRDLAAANILVGENLVCKVADFGLARLIED-NEYTARQGAKFPI 179
Query: 658 SWEMTK--------LEDDVFSFGFMLLE 677
            W   +        ++ DV+SFG +L E
Sbjct: 180 KWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 1   AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 60
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 61  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 111
Query: 581 NTPGKVLN-------WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
             P    N        S+ + +   +A  + +L+      F +  +   N ++ E    K
Sbjct: 112 LRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 168
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 169 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 222

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 44/232 (18%)
Query: 476 EELKEATNNFDMS-----AIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNX 526
           E ++E     D+S      ++G G +G++ +GRL+      + VAI+ L     YT R  
Sbjct: 4   EAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGG--YTERQR 61
Query: 527 XXXXXXXXXX---XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
                         HP+++ L G   +           V ++ EFM NG   + +  N  
Sbjct: 62  REFLSEASIMGQFEHPNIIRLEGVVTNS--------MPVMILTEFMENGALDSFLRLND- 112
Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS 643
           G+     + + +L G+A  +++L       + +  +   NIL+N + + K+SD+GLS   
Sbjct: 113 GQ-FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFL 168
Query: 644 E-------DINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
           E       + +S+GGK   P  W   +           D +S+G ++ E ++
Sbjct: 169 EENSSDPTETSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 218

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
           E+ +   NN      +G G++GK+ +      G+ +    VA++ L S+     +     
Sbjct: 39  EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF------RTHISEN 581
                     H ++V LLG C  GG         V ++ E+   G+       ++ + E 
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKSRVLET 150
Query: 582 TPG-----KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD 636
            P        L+  + L     VA+ + FL +       +  V   N+LL    +AK+ D
Sbjct: 151 DPAFAIANSTLSTRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKIGD 207
Query: 637 YGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
           +GL+  I+++    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 208 FGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 258

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G+G +G+++ G     T VAI+ L      +               H  LV L      
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGN-MSPEAFLQEAQVMKKLRHEKLVQL------ 245
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+MS G+    +     GK L   + + +   +A  + ++ 
Sbjct: 246 ------YAVVSEEPIYIVTEYMSKGSLLDFLKGEM-GKYLRLPQLVDMAAQIASGMAYVE 298
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  ++  NIL+ E+ + K++D+GL  + ED N    +Q  + P  W   +  
Sbjct: 299 RM---NYVHRDLRAANILVGENLVCKVADFGLGRLIED-NEYTARQGAKFPIKWTAPEAA 354
Query: 664 ------LEDDVFSFGFMLLE 677
                 ++ DV+SFG +L E
Sbjct: 355 LYGRFTIKSDVWSFGILLTE 374

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G ++ G   N   VAI+ +      +  +            HP LV L G C++
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      + LV EFM +G    ++   T   +      L + + V + + +L    
Sbjct: 75  QA--------PICLVTEFMEHGCLSDYL--RTQRGLFAAETLLGMCLDVCEGMAYLEEAC 124
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL----- 664
           +    +  +   N L+ E+++ K+SD+G++  V +D  +     + P  W   ++     
Sbjct: 125 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 181
Query: 665 ---EDDVFSFGFMLLE 677
              + DV+SFG ++ E
Sbjct: 182 YSSKSDVWSFGVLMWE 197

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 5   AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 64
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 65  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 115
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                EN P        ++  + G +A  + +L+      F +  +   N ++ E    K
Sbjct: 116 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 172
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 173 IGDFGMTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 226

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 37/214 (17%)
Query: 487 MSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
           +  ++G G +G++  GRL+        VAI+ L +   YT    R+            HP
Sbjct: 12  IEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG--YTDKQRRDFLSEASIMGQFDHP 69
Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           +++ L G               V ++ E+M NG+    + +N  G+     + + +L G+
Sbjct: 70  NIIHLEGVVT--------KCKPVMIITEYMENGSLDAFLRKND-GR-FTVIQLVGMLRGI 119
Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQE 654
              +++L       + +  +   NIL+N + + K+SD+G+S V ED       + GGK  
Sbjct: 120 GSGMKYLSD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKI- 175
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVA 680
            P  W   +           DV+S+G ++ E ++
Sbjct: 176 -PIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 208

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 61/300 (20%)
Query: 490 IMGEGSYGKLYKG-RLENGTSV----AIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           ++G G++G +YKG  +  G +V    AI+ L   +  K  V              HPHLV
Sbjct: 22  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV-EFMDEALIMASMDHPHLV 80
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG----KVLNWSERLAVLIG 598
            LLG C+            + LV + M +G    ++ E+        +LNW       + 
Sbjct: 81  RLLGVCLS---------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC------VQ 125
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----DINSVGGKQE 654
           +AK + +L         +  +   N+L+      K++D+GL+ + E    + N+ GGK  
Sbjct: 126 IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM- 181
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
            P  W   +         + DV+S+G  + E +         G   +E  D L   E   
Sbjct: 182 -PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGG-KPYDGIPTREIPDLLEKGE--- 236
Query: 707 RLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
           RL  P +                 KC   ++ SRP F+++      AA+    A + QR+
Sbjct: 237 RLPQPPICTIDVYMVMV-------KCWMIDADSRPKFKEL------AAEFSRMARDPQRY 283

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 484 NFDMSAIMGEGSYGKLYK----GRLENGTS--VAIRCLPSSKKYTVRNXXXXXXXXXXX- 536
           N +   ++G G++GK+      G  + G S  VA++ L      + R             
Sbjct: 46  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 105
Query: 537 -XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF--------------------R 575
             H ++V LLG C   G         ++L++E+   G+                     +
Sbjct: 106 GSHENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQ 157
Query: 576 THISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS 635
             + E     VL + + L     VAK ++FL         +  +   N+L+   ++ K+ 
Sbjct: 158 KRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKIC 214
Query: 636 DYGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
           D+GL+  I+S+    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 215 DFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWE 266

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 61/300 (20%)
Query: 490 IMGEGSYGKLYKG-RLENGTSV----AIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           ++G G++G +YKG  +  G +V    AI+ L   +  K  V              HPHLV
Sbjct: 45  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV-EFMDEALIMASMDHPHLV 103
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG----KVLNWSERLAVLIG 598
            LLG C+            + LV + M +G    ++ E+        +LNW       + 
Sbjct: 104 RLLGVCLS---------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC------VQ 148
Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE----DINSVGGKQE 654
           +AK + +L         +  +   N+L+      K++D+GL+ + E    + N+ GGK  
Sbjct: 149 IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKM- 204
Query: 655 DPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
            P  W   +         + DV+S+G  + E +         G   +E  D L   E   
Sbjct: 205 -PIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGG-KPYDGIPTREIPDLLEKGE--- 259
Query: 707 RLVDPVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQRF 766
           RL  P +                 KC   ++ SRP F+++      AA+    A + QR+
Sbjct: 260 RLPQPPICTIDVYMVMV-------KCWMIDADSRPKFKEL------AAEFSRMARDPQRY 306

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 4   AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 63
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 64  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 114
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                EN P        ++  + G +A  + +L+      F +  +   N ++ E    K
Sbjct: 115 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 171
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 172 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 225

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT---VRNXXXXXXXXXXXXHP 539
           ++ +   +G G++GK+  G+ E  G  VA++ L   K  +   V              HP
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76
Query: 540 HLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
           H++ L            Y V    + +F+V E++S G    +I +N  G+ L+  E   +
Sbjct: 77  HIIKL------------YQVISTPSDIFMVMEYVSGGELFDYICKN--GR-LDEKESRRL 121
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
              +   V + H  ++    +  +K  N+LL+ H  AK++D+GLS +  D
Sbjct: 122 FQQILSGVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 4   AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 63
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 64  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 114
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                EN P        ++  + G +A  + +L+      F +  +   N ++ E    K
Sbjct: 115 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 171
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 172 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 225

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 469 ACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKK 520
           A   +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +
Sbjct: 5   AADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR 64
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS- 579
             +              H H+V LLG    G            ++ E M+ G+ ++++  
Sbjct: 65  ERIEFLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRS 115
Query: 580 -----ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK 633
                EN P        ++  + G +A  + +L+      F +  +   N ++ E    K
Sbjct: 116 LRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 172
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           + D+G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 173 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 226

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 109 GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 160
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 161 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 216
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 217 PESLTESKFSVASDVWSFGVVLYE 240

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 76  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 127
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 128 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 183
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 184 PESLTESKFSVASDVWSFGVVLYE 207

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNK-VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
           HPH++ L+         D Y  +  +FLV++ M  G    +++E      L+  E  +++
Sbjct: 159 HPHIITLI---------DSYESSSFMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIM 206
Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             + +AV FLH   I    +  +K  NILL+++   +LSD+G S
Sbjct: 207 RSLLEAVSFLHANNI---VHRDLKPENILLDDNMQIRLSDFGFS 247

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 32/206 (15%)
Query: 490 IMGEGSYGKLYKGRLENGTS-----VAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCL 544
           ++G G +G++YKG L+  +      VAI+ L +      R               H +  
Sbjct: 51  VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR 110
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           L   I            + ++ E+M NG     + E   G+  +  + + +L G+A  ++
Sbjct: 111 LEGVIS-------KYKPMMIITEYMENGALDKFLREKD-GE-FSVLQLVGMLRGIAAGMK 161
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQEDPNSW 659
           +L       + +  +   NIL+N + + K+SD+GLS V ED       + GGK   P  W
Sbjct: 162 YLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI--PIRW 216
Query: 660 EMTKL--------EDDVFSFGFMLLE 677
              +           DV+SFG ++ E
Sbjct: 217 TAPEAISYRKFTSASDVWSFGIVMWE 242

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 78  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 130 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 84  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 135
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 136 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 191
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 192 PESLTESKFSVASDVWSFGVVLYE 215

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 78  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 130 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 83  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 134
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 135 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 190
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 191 PESLTESKFSVASDVWSFGVVLYE 214

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 85  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 136
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 137 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 192
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 193 PESLTESKFSVASDVWSFGVVLYE 216

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 81  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 77  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 128
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 129 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 184
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 185 PESLTESKFSVASDVWSFGVVLYE 208

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 82  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 133
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 134 LGTK---RYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 189
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 190 PESLTESKFSVASDVWSFGVVLYE 213

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXX 527
           +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +  +    
Sbjct: 3   DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 62
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------EN 581
                     H H+V LLG    G            ++ E M+ G+ ++++       EN
Sbjct: 63  EASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPEMEN 113
Query: 582 TPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            P        ++  + G +A  + +L+      F +  +   N ++ E    K+ D+G++
Sbjct: 114 NPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT 170
Query: 641 --IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
             I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 171 RDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 217

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G+++ G     T VAI+ L      +  +            H  LV L      
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQL------ 69
Query: 551 GGGRDDYAV---NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                 YAV     +++V E+M+ G+    + +   G+ L     + +   VA  + ++ 
Sbjct: 70  ------YAVVSEEPIYIVTEYMNKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIE 122
Query: 608 TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMTK-- 663
                 + +  +++ NIL+    I K++D+GL+ + ED N    +Q  + P  W   +  
Sbjct: 123 RM---NYIHRDLRSANILVGNGLICKIADFGLARLIED-NEXTARQGAKFPIKWTAPEAA 178
Query: 664 ------LEDDVFSFGFMLLESVA 680
                 ++ DV+SFG +L E V 
Sbjct: 179 LYGRFTIKSDVWSFGILLTELVT 201

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++  +   + ++  + L     + K +++
Sbjct: 81  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQAH--AERIDHIKLLQYTSQICKGMEY 132
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 133 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 188
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 189 PESLTESKFSVASDVWSFGVVLYE 212

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +   +   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P KV    
Sbjct: 87  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139
Query: 587 -----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
                L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+ 
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 196
Query: 642 -VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
            + +D + V  G    P  W         +  ++ DV+SFG +L E
Sbjct: 197 DIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 79  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 130
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 131 LGT---KRYIHRNLATRNILVENENRV-KIGDFGLTKVLPQDKEYYKVKEPGESPIFWYA 186
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 187 PESLTESKFSVASDVWSFGVVLYE 210

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYT 522
           +P+ R + ++         ++   +GEG +G +++G     EN   +VAI+   +    +
Sbjct: 379 MPSTRDYEIQR-----ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS 433
Query: 523 VRNXXXXXXXXXXX-XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
           VR              HPH+V L+G   +         N V+++ E  + G  R+ +   
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL--- 481
Query: 582 TPGKVLNWSERLAVLI----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
              +V  +S  LA LI     ++ A+ +L +     F +  +   N+L++ +   KL D+
Sbjct: 482 ---QVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDF 535
Query: 638 GLSIVSED 645
           GLS   ED
Sbjct: 536 GLSRYMED 543

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
           AT+ ++  A +G G+YG +YK R   +G  VA++   +P+ ++     TVR         
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
               HP++V L+  C     R D  + KV LV+E +   + RT++ +  P  +   +E +
Sbjct: 61  EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             L+    + + FLH   I    +  +K  NIL+      KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
           AT+ ++  A +G G+YG +YK R   +G  VA++   +P+ ++     TVR         
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
               HP++V L+  C     R D  + KV LV+E +   + RT++ +  P  +   +E +
Sbjct: 61  EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             L+    + + FLH   I    +  +K  NIL+      KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC--LPSSKK----YTVRNXXXXXXXX 533
           AT+ ++  A +G G+YG +YK R   +G  VA++   +P+ ++     TVR         
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVRE-VALLRRL 60
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
               HP++V L+  C     R D  + KV LV+E +   + RT++ +  P  +   +E +
Sbjct: 61  EAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP--AETI 114
Query: 594 AVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             L+    + + FLH   I    +  +K  NIL+      KL+D+GL+
Sbjct: 115 KDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 96  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 147
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 148 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 203
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 204 PESLTESKFSVASDVWSFGVVLYE 227

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 34  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 80  ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
            +L E
Sbjct: 229 VLLWE 233

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 96  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 147
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 148 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYA 203
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 204 PESLTESKFSVASDVWSFGVVLYE 227

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 491 MGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLL 545
           +G+G++G +   R +      G  VA++ L  S +  +R+            H ++V   
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
           G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++
Sbjct: 78  GVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEY 129
Query: 606 LHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV---SEDINSVGGKQEDPNSWEM 661
           L T     + +  + T NIL+ NE+R+ K+ D+GL+ V    ++   V    E P  W  
Sbjct: 130 LGT---KRYIHRDLATRNILVENENRV-KIGDFGLTKVLPQDKEFFKVKEPGESPIFWYA 185
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +        +  DV+SFG +L E
Sbjct: 186 PESLTESKFSVASDVWSFGVVLYE 209

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +   +   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P KV    
Sbjct: 87  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139
Query: 587 -----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
                L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+ 
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLAR 196
Query: 642 -VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
            + +D + V  G    P  W         +  ++ DV+SFG +L E
Sbjct: 197 DIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 27/227 (11%)
Query: 462 LGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY 521
           LGS+  P+         +    +      +G G +G +  G+      VAI+ +      
Sbjct: 3   LGSKNAPSTAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM- 61
Query: 522 TVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
           +               H  LV L G C             +F++ E+M+NG    ++ E 
Sbjct: 62  SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ--------RPIFIITEYMANGCLLNYLREM 113
Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS- 640
                    + L +   V +A+++L +     F +  +   N L+N+  + K+SD+GLS 
Sbjct: 114 R--HRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSR 168
Query: 641 --IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE 677
             +  E  +SVG K   P  W   ++        + D+++FG ++ E
Sbjct: 169 YVLDDEYTSSVGSKF--PVRWSPPEVLMYSKFSSKSDIWAFGVLMWE 213

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 34  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 80  ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
            +L E
Sbjct: 229 VLLWE 233

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
           +G+G++GK+YK +  E G   A + + +  +  + +            HP++V LLG   
Sbjct: 19  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
             G        K++++ EF   G     + E   G  L   +   V   + +A+ FLH+ 
Sbjct: 79  HDG--------KLWIMIEFCPGGAVDAIMLELDRG--LTEPQIQVVCRQMLEALNFLHSK 128
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            I    +  +K  N+L+      +L+D+G+S
Sbjct: 129 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 156

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXX 527
           +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +  +    
Sbjct: 5   DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN 64
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS------EN 581
                     H H+V LLG    G            ++ E M+ G+ ++++       EN
Sbjct: 65  EASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPEMEN 115
Query: 582 TPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            P        ++  + G +A  + +L+      F +  +   N ++ E    K+ D+G++
Sbjct: 116 NPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT 172
Query: 641 --IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
             I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 173 RDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 219

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKG-RLENGTSVAIRCLPSSKKYTV---RNXXXXXXXXX 534
           +     +++   +G+G+YG ++K      G  VA++ +  + + +    R          
Sbjct: 5   RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTE 64
Query: 535 XXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
              H ++V LL        RD      V+LV+++M      T +       +L    +  
Sbjct: 65  LSGHENIVNLLNVLRADNDRD------VYLVFDYME-----TDLHAVIRANILEPVHKQY 113
Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
           V+  + K +++LH+G   G  +  +K +NILLN     K++D+GLS
Sbjct: 114 VVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLS 156

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 474 TLEELKEATNNF-DMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNXXX 528
           ++E  KE   ++  +  ++G G +G++ +GRL+      + VAI+ L     YT R    
Sbjct: 4   SMEFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGG--YTERQRRE 61
Query: 529 XXXXXXXX---XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
                       HP+++ L G   +           V ++ EFM NG   + +  N  G+
Sbjct: 62  FLSEASIMGQFEHPNIIRLEGVVTNS--------MPVMILTEFMENGALDSFLRLND-GQ 112
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                + + +L G+A  +++L       + +  +   NIL+N + + K+SD+GLS   E+
Sbjct: 113 -FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEE 168
Query: 646 -------INSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVA 680
                   +S+GGK   P  W   +           D +S+G ++ E ++
Sbjct: 169 NSSDPTYTSSLGGKI--PIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 216

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G +  G+      VAI+ +      +               H  LV L G C  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 71  Q--------RPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKDVCEAMEYLES-- 118
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
              F +  +   N L+N+  + K+SD+GLS   +  E  +SVG K   P  W   ++   
Sbjct: 119 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 175
Query: 665 -----EDDVFSFGFMLLE 677
                + D+++FG ++ E
Sbjct: 176 SKFSSKSDIWAFGVLMWE 193

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G +  G+      VAI+ +      +               H  LV L G C  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 75  Q--------RPIFIITEYMANGCLLNYLREMRHR--FQTQQLLEMCKDVCEAMEYLES-- 122
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
              F +  +   N L+N+  + K+SD+GLS   +  E  +SVG K   P  W   ++   
Sbjct: 123 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 179
Query: 665 -----EDDVFSFGFMLLE 677
                + D+++FG ++ E
Sbjct: 180 SKFSSKSDIWAFGVLMWE 197

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYT 522
           +P+ R + ++         ++   +GEG +G +++G     EN   +VAI+   +    +
Sbjct: 379 MPSTRDYEIQR-----ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDS 433
Query: 523 VRNXXXXXXXXXXX-XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
           VR              HPH+V L+G   +         N V+++ E  + G  R+ +   
Sbjct: 434 VREKFLQEALTMRQFDHPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL--- 481
Query: 582 TPGKVLNWSERLAVLI----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
              +V  +S  LA LI     ++ A+ +L +     F +  +   N+L++     KL D+
Sbjct: 482 ---QVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSATDCVKLGDF 535
Query: 638 GLSIVSED 645
           GLS   ED
Sbjct: 536 GLSRYMED 543

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 491 MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
           +G+G++GK+YK +  E G   A + + +  +  + +            HP++V LLG   
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
             G        K++++ EF   G     + E   G  L   +   V   + +A+ FLH+ 
Sbjct: 87  HDG--------KLWIMIEFCPGGAVDAIMLELDRG--LTEPQIQVVCRQMLEALNFLHSK 136
Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            I    +  +K  N+L+      +L+D+G+S
Sbjct: 137 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 164

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
           +G G +G+++       T VA++ + P S   +V              H  LV L  H +
Sbjct: 23  LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKL--HAV 78
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHI-----SENTPGKVLNWSERLAVLIGVAKAVQ 604
                       ++++ EFM+ G+    +     S+    K++++S ++A  +   +   
Sbjct: 79  -------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN 131
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMT 662
           ++H  +         +  NIL++   + K++D+GL+ V ED N    ++  + P  W   
Sbjct: 132 YIHRDL---------RAANILVSASLVCKIADFGLARVIED-NEYTAREGAKFPIKWTAP 181
Query: 663 K--------LEDDVFSFGFMLLESV 679
           +        ++ DV+SFG +L+E V
Sbjct: 182 EAINFGSFTIKSDVWSFGILLMEIV 206

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G +  G+      VAI+ +      +               H  LV L G C  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 82  Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 129
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
              F +  +   N L+N+  + K+SD+GLS   +  E  +SVG K   P  W   ++   
Sbjct: 130 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 186
Query: 665 -----EDDVFSFGFMLLE 677
                + D+++FG ++ E
Sbjct: 187 SKFSSKSDIWAFGVLMWE 204

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 43  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 88
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 89  ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 120
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 121 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 177
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 237
Query: 673 FMLLE 677
            +L E
Sbjct: 238 VLLWE 242

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G++         K + +   +VA++ L   +++K                 H +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    +A+ +++L +       +  +   N+L+ E+ + K++D+GL   + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++      P  W         +   + DV+SFG ++ E
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G +  G+      VAI+ +      +               H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 76  Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSWEMTKL--- 664
              F +  +   N L+N+  + K+SD+GLS   +  E  +SVG K   P  W   ++   
Sbjct: 124 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF--PVRWSPPEVLMY 180
Query: 665 -----EDDVFSFGFMLLE 677
                + D+++FG ++ E
Sbjct: 181 SKFSSKSDIWAFGVLMWE 198

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 114/298 (38%), Gaps = 53/298 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +  ++   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 27  DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P K     
Sbjct: 87  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKD 139
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSE 644
            L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+  + +
Sbjct: 140 FLTLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKIXDFGLARDIYK 196
Query: 645 DINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE 695
           D + V  G    P  W         +  ++ DV+SFG +L E +     +   G  + EE
Sbjct: 197 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE-IFSLGASPYPGVKIDEE 255
Query: 696 LDSLNSQEGRQRLVD---PVVMATXXXXXXXXXXXXANKCICSESWSRPSFEDILWNL 750
                 +  R R  D   P +  T               C   E   RP+F +++ +L
Sbjct: 256 FXRRLKEGTRMRAPDYTTPEMYQTML------------DCWHGEPSQRPTFSELVEHL 301

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G++         K + +   +VA++ L   +++K                 H +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + +
Sbjct: 103 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    +A+ +++L +       +  +   N+L+ E+ + K++D+GL   + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++      P  W         +   + DV+SFG ++ E
Sbjct: 209 NIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 34  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 80  ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
            +L E
Sbjct: 229 VLLWE 233

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +  ++   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 27  DRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 86
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P K     
Sbjct: 87  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKD 139
Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-VSE 644
            L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+  + +
Sbjct: 140 FLTLEHLICYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDIYK 196
Query: 645 DINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           D + V  G    P  W         +  ++ DV+SFG +L E
Sbjct: 197 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 238

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 34  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 79
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 80  ---------------------HHLNVVNLLGACTKPGG-------PLMVITEFCKFGNLS 111
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 112 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 168
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 169 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 228
Query: 673 FMLLE 677
            +L E
Sbjct: 229 VLLWE 233

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +  ++   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 28  DRLNLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 87
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGKV---- 586
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P K     
Sbjct: 88  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDL 140
Query: 587 ----LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI- 641
               L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+  
Sbjct: 141 YKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAARNILLSEKNVVKICDFGLARD 197
Query: 642 VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
           + +D + V  G    P  W         +  ++ DV+SFG +L E
Sbjct: 198 IXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G++         K + +   +VA++ L   +++K                 H +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + +
Sbjct: 103 IITLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    +A+ +++L +       +  +   N+L+ E+ + K++D+GL   + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++      P  W         +   + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           V EA   G +    CR+  ++ LKE   + +  A+M E       K  +  G        
Sbjct: 80  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE------LKILIHIG-------- 125
Query: 516 PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                                 H ++V LLG C   GG        + ++ EF   GN  
Sbjct: 126 ---------------------HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLS 157
Query: 576 THI----SENTPGKV---------LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN 622
           T++    +E  P KV         L     +     VAK ++FL +       +  +   
Sbjct: 158 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKC---IHRDLAAR 214
Query: 623 NILLNEHRIAKLSDYGLSI-VSEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFG 672
           NILL+E  + K+ D+GL+  + +D + V  G    P  W         +  ++ DV+SFG
Sbjct: 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFG 274
Query: 673 FMLLE 677
            +L E
Sbjct: 275 VLLWE 279

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCI 549
           +G G +G+++       T VA++ + P S   +V              H  LV L  H +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKL--HAV 251
Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHI-----SENTPGKVLNWSERLAVLIGVAKAVQ 604
                       ++++ EFM+ G+    +     S+    K++++S ++A  +   +   
Sbjct: 252 -------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN 304
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSWEMT 662
           ++H           ++  NIL++   + K++D+GL+ V ED N    ++  + P  W   
Sbjct: 305 YIH---------RDLRAANILVSASLVCKIADFGLARVIED-NEYTAREGAKFPIKWTAP 354
Query: 663 K--------LEDDVFSFGFMLLESV 679
           +        ++ DV+SFG +L+E V
Sbjct: 355 EAINFGSFTIKSDVWSFGILLMEIV 379

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 42/233 (18%)
Query: 476 EELKEATNNFDMSAIMGEGSYGKLYK------GRLENGTSVAIRCLPSSKKYTVRNXXXX 529
           E+ +   NN      +G G++GK+ +      G+ +    VA++ L S+     +     
Sbjct: 39  EKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMS 98
Query: 530 XXXXXXX--XHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE------- 580
                     H ++V LLG C  GG         V ++ E+   G+    +         
Sbjct: 99  ELKIMSHLGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKRPPGLE 150
Query: 581 ------NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
                 + P + L+  + L     VA+ + FL +       +  V   N+LL    +AK+
Sbjct: 151 YSYNPSHNPEEQLSSRDLLHFSSQVAQGMAFLAS---KNCIHRDVAARNVLLTNGHVAKI 207
Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWE--------MTKLEDDVFSFGFMLLE 677
            D+GL+  I+++    V G    P  W         +  ++ DV+S+G +L E
Sbjct: 208 GDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 260

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 39/224 (17%)
Query: 483 NNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXX 536
           +   +   +G G++G++ +       +     +VA++ L     ++              
Sbjct: 29  DRLKLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIH 88
Query: 537 XHPHL--VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI----SENTPGK----- 585
              HL  V LLG C   GG        + ++ EF   GN  T++    +E  P K     
Sbjct: 89  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLY 141
Query: 586 --VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI-V 642
              L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+  +
Sbjct: 142 KDFLTLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 643 SEDINSV-GGKQEDPNSW--------EMTKLEDDVFSFGFMLLE 677
            +D + V  G    P  W         +  ++ DV+SFG +L E
Sbjct: 199 XKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLG 546
           +S  +G GS+G +YKG+     +V I  +        +             H +++  +G
Sbjct: 40  LSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMG 99
Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-ENTPGKVLNWSERLAVLIGVAKAVQF 605
           +      +D+ A+     V ++    +   H+  + T  ++    + + +    A+ + +
Sbjct: 100 YMT----KDNLAI-----VTQWCEGSSLYKHLHVQETKFQMF---QLIDIARQTAQGMDY 147
Query: 606 LHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ-EDPNS---W-- 659
           LH   I    +  +K+NNI L+E    K+ D+GL+ V    +  G +Q E P     W  
Sbjct: 148 LHAKNI---IHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS--GSQQVEQPTGSVLWMA 202
Query: 660 -EMTKLED--------DVFSFGFMLLESVAG 681
            E+ +++D        DV+S+G +L E + G
Sbjct: 203 PEVIRMQDNNPFSFQSDVYSYGIVLYELMTG 233

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 96  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 202 HIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC------------LPSSKKYTVRNXX 527
           AT+ ++  A +G G+YG +YK R   +G  VA++             LP S   TVR   
Sbjct: 7   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPIS---TVRE-V 62
Query: 528 XXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
                     HP++V L+  C     R D  + KV LV+E +   + RT++ +  P  + 
Sbjct: 63  ALLRRLEAFEHPNVVRLMDVC--ATSRTDREI-KVTLVFEHVDQ-DLRTYLDKAPPPGLP 118
Query: 588 NWSERLAVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
             +E +  L+    + + FLH   I    +  +K  NIL+      KL+D+GL+
Sbjct: 119 --AETIKDLMRQFLRGLDFLHANCI---VHRDLKPENILVTSGGTVKLADFGLA 167

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
           F  +E + +     +   +G+GS+G +Y+G      + E  T VA++ +   +S +  + 
Sbjct: 4   FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 63
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
                        H H+V LLG    G            +V E M++G+ ++++      
Sbjct: 64  FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 114
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
           +EN PG+      E + +   +A  + +L+      F +  +   N ++      K+ D+
Sbjct: 115 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 171
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
           G++  I   D    GGK   P  W   + L+D VF       SFG +L E
Sbjct: 172 GMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 221

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
           F  +E + +     +   +G+GS+G +Y+G      + E  T VA++ +   +S +  + 
Sbjct: 7   FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 66
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
                        H H+V LLG    G            +V E M++G+ ++++      
Sbjct: 67  FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 117
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
           +EN PG+      E + +   +A  + +L+      F +  +   N ++      K+ D+
Sbjct: 118 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
           G++  I   D    GGK   P  W   + L+D VF       SFG +L E
Sbjct: 175 GMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 67  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 111
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 112 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 160

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
           +  +E + A     MS  +G+GS+G +Y+G      + E  T VAI+ +   +S +  + 
Sbjct: 2   YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIE 61
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS----- 579
                        H H+V LLG    G            ++ E M+ G+ ++++      
Sbjct: 62  FLNEASVMKEFNCH-HVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPE 112
Query: 580 -ENTPGKVLNWSERLAVLIG-VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
            EN P        ++  + G +A  + +L+      F +  +   N  + E    K+ D+
Sbjct: 113 MENNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDF 169
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LED-------DVFSFGFMLLE 677
           G++  I   D    GGK   P  W   + L+D       DV+SFG +L E
Sbjct: 170 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE 219

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 10  ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 70  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 163

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 12  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 71
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 72  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 116
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 117 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 165

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 38  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 97
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 98  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 142
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 143 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 191

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 13  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 72
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 73  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 117
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 118 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 166

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 74
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 75  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 119
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 120 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVC 543
           +GE  +GK+YKG L      E   +VAI+ L    +  +R              HP++VC
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWS 590
           LLG               + +++ + S+G+    +   +P                L   
Sbjct: 94  LLGVVTKD--------QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSEDINS 648
           + + ++  +A  +++L +  +    +  + T N+L+ +    K+SD GL   + + D   
Sbjct: 146 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 202
Query: 649 VGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
           + G    P  W   +        ++ D++S+G +L E
Sbjct: 203 LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWE 239

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 36/213 (16%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 10  ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 70  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-GGK 652
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED       K
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKASK 171
Query: 653 QEDPNSWEMTK--------LEDDVFSFGFMLLE 677
            + P  W   +           DV+ FG  + E
Sbjct: 172 GKLPIKWMAPESINFRRFTSASDVWMFGVCMWE 204

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 483 NNFDMSAIMGEGSYGKLYKGRL---EN-GTSVAIRCLPSSKKYTVRNXXXXXXXXXXX-X 537
              ++   +GEG +G +++G     EN   +VAI+   +    +VR              
Sbjct: 10  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 69
Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +      +V  +S  LA LI
Sbjct: 70  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLI 114
Query: 598 ----GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
                ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED
Sbjct: 115 LYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 163

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 491 MGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVC 543
           +GE  +GK+YKG L      E   +VAI+ L    +  +R              HP++VC
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWS 590
           LLG               + +++ + S+G+    +   +P                L   
Sbjct: 77  LLGVVTKD--------QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL--SIVSEDINS 648
           + + ++  +A  +++L +  +    +  + T N+L+ +    K+SD GL   + + D   
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 185
Query: 649 VGGKQEDPNSWEMTK--------LEDDVFSFGFMLLE 677
           + G    P  W   +        ++ D++S+G +L E
Sbjct: 186 LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWE 222

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           +G+GS+G +Y+G      + E  T VA++ +   +S +  +              H H+V
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 83
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
            LLG    G            +V E M++G+ ++++      +EN PG+      E + +
Sbjct: 84  RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 135
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
              +A  + +L+      F +  +   N ++      K+ D+G++  I   D    GGK 
Sbjct: 136 AAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKG 192
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
             P  W   + L+D VF       SFG +L E
Sbjct: 193 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G++         K + +   +VA++ L   +++K                 H +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + +
Sbjct: 103 IIHLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    +A+ +++L +       +  +   N+L+ E+ + K++D+GL   + DIN
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 208
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++      P  W         +   + DV+SFG ++ E
Sbjct: 209 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 251

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVR 524
           F  +E + +     +   +G+GS+G +Y+G      + E  T VA++ +   +S +  + 
Sbjct: 7   FVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIE 66
Query: 525 NXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------ 578
                        H H+V LLG    G            +V E M++G+ ++++      
Sbjct: 67  FLNEASVMKGFTCH-HVVRLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPE 117
Query: 579 SENTPGK-VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY 637
           +EN PG+      E + +   +A  + +L+      F +  +   N ++      K+ D+
Sbjct: 118 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
Query: 638 GLS--IVSEDINSVGGKQEDPNSWEMTK-LEDDVF-------SFGFMLLE 677
           G++  I   D    GGK   P  W   + L+D VF       SFG +L E
Sbjct: 175 GMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
           +GEG +GK  LY     N   G  VA++ L       +R+             H H+V  
Sbjct: 16  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
            G C D G +       V LV E++  G+ R ++    P   +  ++ L     + + + 
Sbjct: 76  KGCCEDQGEKS------VQLVMEYVPLGSLRDYL----PRHCVGLAQLLLFAQQICEGMA 125
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
           +LH      + +  +   N+LL+  R+ K+ D+GL+    + +     +ED +S   W  
Sbjct: 126 YLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 182
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +           DV+SFG  L E
Sbjct: 183 PECLKECKFYYASDVWSFGVTLYE 206

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           +G+GS+G +Y+G      + E  T VA++ +   +S +  +              H H+V
Sbjct: 25  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 83
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
            LLG    G            +V E M++G+ ++++      +EN PG+      E + +
Sbjct: 84  RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 135
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
              +A  + +L+      F +  +   N ++      K+ D+G++  I   D    GGK 
Sbjct: 136 AAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 192
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
             P  W   + L+D VF       SFG +L E
Sbjct: 193 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 224

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 25  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 84
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 85  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 136
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 137 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 190
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 191 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 233

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 491 MGEGSYGK--LYKGRLEN---GTSVAIRCLPSSKKYTVRNX-XXXXXXXXXXXHPHLVCL 544
           +GEG +GK  LY     N   G  VA++ L       +R+             H H+V  
Sbjct: 17  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
            G C D G +       V LV E++  G+ R ++    P   +  ++ L     + + + 
Sbjct: 77  KGCCEDQGEKS------VQLVMEYVPLGSLRDYL----PRHCVGLAQLLLFAQQICEGMA 126
Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---WEM 661
           +LH      + +  +   N+LL+  R+ K+ D+GL+    + +     +ED +S   W  
Sbjct: 127 YLHA---QHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA 183
Query: 662 TK--------LEDDVFSFGFMLLE 677
            +           DV+SFG  L E
Sbjct: 184 PECLKECKFYYASDVWSFGVTLYE 207

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 16  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 76  QDELDFLMEALIISKLNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 185 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 292 NFAIILERIEYCTQ 305

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           +G+GS+G +Y+G      + E  T VA++ +   +S +  +              H H+V
Sbjct: 26  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 84
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
            LLG    G            +V E M++G+ ++++      +EN PG+      E + +
Sbjct: 85  RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 136
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
              +A  + +L+      F +  +   N ++      K+ D+G++  I   D    GGK 
Sbjct: 137 AAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 193
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
             P  W   + L+D VF       SFG +L E
Sbjct: 194 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 225

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 21  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 81  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 132
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 133 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 186
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 187 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 229

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 30  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 89
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 90  QDELDFLMEALIISKLNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 141
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 142 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 198
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 199 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 258
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 259 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 305
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 306 NFAIILERIEYCTQ 319

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 29  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 88
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 89  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 140
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 141 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 194
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 195 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 237

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 22  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 81
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 82  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 133
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 134 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 190
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 191 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 250
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 251 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 297
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 298 NFAIILERIEYCTQ 311

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 96  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 32  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 91
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 92  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 143
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 144 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 200
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 201 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 260
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 261 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 307
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 308 NFAIILERIEYCTQ 321

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 491 MGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNXXXXXXXXXXXXHPHLVCLLGHCID 550
           +G G +G +  G+      VAI+ +      +               H  LV L G C  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 76  Q--------RPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLES-- 123
Query: 611 IPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL---- 664
              F +  +   N L+N+  + K+SD+GLS  ++ ++  S  G +  P  W   ++    
Sbjct: 124 -KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSK-FPVRWSPPEVLMYS 181
Query: 665 ----EDDVFSFGFMLLE 677
               + D+++FG ++ E
Sbjct: 182 KFSSKSDIWAFGVLMWE 198

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 96  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 33/232 (14%)
Query: 463 GSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT 522
           GS+     + +  +E +       +   +G G +G+++ G     T VA++ L      +
Sbjct: 1   GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMS 59
Query: 523 VRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAV---NKVFLVYEFMSNGNFRTHIS 579
                          H  LV L            YAV     ++++ E+M NG+    + 
Sbjct: 60  PDAFLAEANLMKQLQHQRLVRL------------YAVVTQEPIYIITEYMENGSLVDFL- 106
Query: 580 ENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
             TP G  L  ++ L +   +A+ + F+       + +  ++  NIL+++    K++D+G
Sbjct: 107 -KTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFG 162
Query: 639 LSIVSEDINSVGGKQ--EDPNSWEMTK--------LEDDVFSFGFMLLESVA 680
           L+ + ED N    ++  + P  W   +        ++ DV+SFG +L E V 
Sbjct: 163 LARLIED-NEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 15  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 74
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 75  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 126
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 127 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 243
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 244 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 290
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 291 NFAIILERIEYCTQ 304

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 37/212 (17%)
Query: 491 MGEGSYGKLYKG------RLENGTSVAIRCL--PSSKKYTVRNXXXXXXXXXXXXHPHLV 542
           +G+GS+G +Y+G      + E  T VA++ +   +S +  +              H H+V
Sbjct: 24  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCH-HVV 82
Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI------SENTPGK-VLNWSERLAV 595
            LLG    G            +V E M++G+ ++++      +EN PG+      E + +
Sbjct: 83  RLLGVVSKG--------QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQM 134
Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQ 653
              +A  + +L+      F +  +   N ++      K+ D+G++  I   D    GGK 
Sbjct: 135 AAEIADGMAYLNA---KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG 191
Query: 654 EDPNSWEMTK-LEDDVF-------SFGFMLLE 677
             P  W   + L+D VF       SFG +L E
Sbjct: 192 LLPVRWMAPESLKDGVFTTSSDMWSFGVVLWE 223

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 36  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 96  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 147
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 201
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 202 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 244

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGK--------LYKGRLENGTSVAIRCLPS--SKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG++G+        L K +    T VA++ L S  ++K                 H +
Sbjct: 28  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 87
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHIS-------------ENTPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++               + P + L
Sbjct: 88  IINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 139
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
           +  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL   + DI+
Sbjct: 140 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGL---ARDIH 193
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
            +   ++      P  W         +   + DV+SFG +L E
Sbjct: 194 HIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 236

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 30  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 89
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 90  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILMELMAGGDLKSFLRE 141
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 142 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 198
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 199 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 258
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 259 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 305
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 306 NFAIILERIEYCTQ 319

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 15  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 74
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 75  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILMELMAGGDLKSFLRE 126
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 127 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 243
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 244 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 290
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 291 NFAIILERIEYCTQ 304

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN------XXXXXXXX 533
             +NF+   ++G+GS+GK+   R+ E G   A++ L   K   +++              
Sbjct: 21  GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVL--KKDVILQDDDVECTMTEKRILS 78
Query: 534 XXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
               HP L  L   C           +++F V EF++ G+   HI ++   +  + +   
Sbjct: 79  LARNHPFLTQLFC-CFQ-------TPDRLFFVMEFVNGGDLMFHIQKS---RRFDEARAR 127
Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
                +  A+ FLH     G     +K +N+LL+     KL+D+G+
Sbjct: 128 FYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 7   AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 66
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 67  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 118
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 119 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 175
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 176 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 235
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 236 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 282
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 283 NFAIILERIEYCTQ 296

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 50/223 (22%)
Query: 491 MGEGSYGKLY--------KGRLENGTSVAIRCLP--SSKKYTVRNXXXXXXXXXXXXHPH 540
           +GEG +G++         K + +   +VA++ L   +++K                 H +
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148
Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVL 587
           ++ LLG C   G         ++++ E+ S GN R ++                 P + +
Sbjct: 149 IINLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 200
Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN 647
            + + ++    +A+ +++L +       +  +   N+L+ E+ + K++D+GL   + DIN
Sbjct: 201 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGL---ARDIN 254
Query: 648 SVGGKQED-----PNSW--------EMTKLEDDVFSFGFMLLE 677
           ++   ++      P  W         +   + DV+SFG ++ E
Sbjct: 255 NIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 297

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRLENGTSV-AIRCLPSSKKYTVR-----NXXXXXXX 532
           K   + F++  ++G+GS+GK++  +  +G+    +  +   KK T++             
Sbjct: 20  KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 533 XXXXXHPHLVCLLGHCIDGGGRDDYAVN---KVFLVYEFMSNGNFRTHISENTPGKVLNW 589
                HP +V L            YA     K++L+ +F+  G+  T +S+     +   
Sbjct: 80  LVEVNHPFIVKL-----------HYAFQTEGKLYLILDFLRGGDLFTRLSKEV---MFTE 125
Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
            +    L  +A A+  LH+    G     +K  NILL+E    KL+D+GLS  S D
Sbjct: 126 EDVKFYLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 16  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 76  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 185 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 292 NFAIILERIEYCTQ 305

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 42  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 101
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 102 QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 153
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 154 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 210
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 211 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 270
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 271 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 317
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 318 NFAIILERIEYCTQ 331

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 469 ACRSFTLEELKEAT-NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPS-SKK 520
           A ++ ++ +LKE    N  +   +G G++G++Y+G++       +   VA++ LP    +
Sbjct: 16  AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 521 YTVRNXXXXXXXXXXXXHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
               +            H ++V  +G  +    R        F++ E M+ G+ ++ + E
Sbjct: 76  QDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR--------FILLELMAGGDLKSFLRE 127
Query: 581 NTPGKVLNWSERLAVLIGVAKAV----QFLHTGVIPGFFNNRVKTNNILLN---EHRIAK 633
             P      S  +  L+ VA+ +    Q+L       F +  +   N LL      R+AK
Sbjct: 128 TRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 184
Query: 634 LSDYGLS--IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLE--SVAG 681
           + D+G++  I        GG    P  W   +         + D +SFG +L E  S+  
Sbjct: 185 IGDFGMAQDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGY 244
Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATXXXXXXXXXXXXANKCICSESWSRP 741
               ++  Q + E + S    +  +    PV                  +C   +   RP
Sbjct: 245 MPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVY-------------RIMTQCWQHQPEDRP 291
Query: 742 SFEDILWNLQYAAQ 755
           +F  IL  ++Y  Q
Sbjct: 292 NFAIILERIEYCTQ 305

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	766
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	7e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-16
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-49
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-48
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-12
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-27
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-27
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-26
3q4u_A	301	Activin receptor type-1; structural genomics conso	4e-26
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	9e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-16
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-16
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-16
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-16
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-16
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-16
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	5e-16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	5e-16
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	9e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-15
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-15
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-15
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-15
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-15
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-15
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-15
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	5e-15
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-15
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-15
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	6e-15
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-15
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	8e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-14
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-14
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-14
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-14
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	3e-14
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-14
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-14
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	7e-14
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-14
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-14
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	9e-14
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-13
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-13
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-13
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-13
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-13
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	7e-13
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-13
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	8e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-12
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-12
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-12
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-12
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-12
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-12
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-12
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-12
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-12
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-12
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	6e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	7e-12
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	7e-12
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	7e-12
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-11
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-11
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-11
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-11
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3o0g_A	292	Cell division protein kinase 5; kinase activator c	4e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-11
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-11
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	5e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-11
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-11
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-11
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-10
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-10
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-10
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-10
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	8e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	8e-10
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	9e-10
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-09
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-09
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-09
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-09
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-09
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-08
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	5e-08
3ork_A	311	Serine/threonine protein kinase; structural genomi	6e-08
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	6e-08
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	8e-08
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	8e-08
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	9e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-07
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-07
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-07
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-07
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	5e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	5e-07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-06
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-06
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-06
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-06
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-06
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	4e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	6e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-05
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-05
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	1e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-05
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-05
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	3e-05
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	4e-05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	5e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	6e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	7e-05
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	9e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	9e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-04
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	5e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	6e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	8e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	9e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  220 bits (563), Expect = 7e-66
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 30/322 (9%)

Query: 456 VSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL 515
           +++A               L +L+EATNNFD   ++G G +GK+YKG L +G  VA++  
Sbjct: 12  INDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRR 71

Query: 516 PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFR 575
                  +   +  ++ L+  RHPHLV L+G C +             L+Y++M NGN +
Sbjct: 72  TPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM--------ILIYKYMENGNLK 123

Query: 576 THIS-ENTPGKVLNWSERLAVLIGVAKAVQFLHTG-VIPGFFNNR-VKTNNILLNEHRIA 632
            H+   + P   ++W +RL + IG A+ + +LHT  +I     +R VK+ NILL+E+ + 
Sbjct: 124 RHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAII-----HRDVKSINILLDENFVP 178

Query: 633 KLSDYGLS-IVSEDINS-----VGGKQ--EDPNSWEMTKLED--DVFSFGFMLLESVAG- 681
           K++D+G+S   +E   +     V G     DP  +   +L +  DV+SFG +L E +   
Sbjct: 179 KITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR 238

Query: 682 -PSVAARKGQF--LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESW 738
              V +   +   L E     ++    +++VDP +      ESL      A KC+   S 
Sbjct: 239 SAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSE 298

Query: 739 SRPSFEDILWNLQYAAQVQETA 760
            RPS  D+LW L+YA ++QE+ 
Sbjct: 299 DRPSMGDVLWKLEYALRLQESV 320

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  202 bits (516), Expect = 3e-55
 Identities = 80/263 (30%), Positives = 116/263 (44%), Gaps = 11/263 (4%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L   ++L+ L +    + G     I     L+ L++SSN   G +PP    +  LQ L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276

Query: 174 DDNFFNNTIPNW-FDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
            +N F   IP++   +  +LT L +  N   G  P      S L  L LS N  SG LP 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 233 --LSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSNNSFSGEIPKQYGQ--LNQL 284
             L  +  L VL+LS N+    LP     L   L+   LS+N+FSG I     Q   N L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 285 QQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG 344
           Q+L +  N   G  PP + +   +  L+L+ N  SG++P +L    KL    +  N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 345 GLPSCLSNESDKRVVKFRGNCLS 367
            +P  L        +    N L+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  183 bits (466), Expect = 1e-48
 Identities = 77/341 (22%), Positives = 132/341 (38%), Gaps = 39/341 (11%)

Query: 29  SQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVN---ITCQDNFITELKI----- 80
            +   L+  +  L     L  W +   + C            +TC+D+ +T + +     
Sbjct: 12  REIHQLISFKDVLPDKNLLPDW-SSNKNPC--------TFDGVTCRDDKVTSIDLSSKPL 62

Query: 81  ---IGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDK 137
                   S++ +  G  S    LS +  I+  V+      SL  L L    + G +   
Sbjct: 63  NVGFSAVSSSLLSLTGLESLF--LSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 138 --IHRLYSLEYLDLSSNFLFGSVP-PKISTMVKLQTLILDDNFFNNTIPNWFD---SLPS 191
             +     L++L++SSN L           +  L+ L L  N  +      +        
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS 251
           L  L++  NK++G     + R   L  LD+S N  S  +P L    +L  L++S NKL  
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237

Query: 252 NLP----KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIF-SLP 306
           +           L +  +S+N F G IP     L  LQ L ++ N   G  P  +  +  
Sbjct: 238 DFSRAISTCTE-LKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 307 NISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP 347
            ++ L+L+ N F G++P        L    +S+N  +G LP
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 1e-47
 Identities = 55/245 (22%), Positives = 108/245 (44%), Gaps = 10/245 (4%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L  L+ LR L L    + G +P ++  + +LE L L  N L G +P  +S    L  + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
            +N     IP W   L +L  L + NN  +G  P+ +    +L  LDL+ N  +G++P  
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-- 555

Query: 234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFL-----SNNSFSGEIPKQYGQLNQLQQLD 288
           +++   +   ++ N +        +   M        +   F G   +Q  +L+     +
Sbjct: 556 AAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL-NCGGKLVFFDISNNKLTGGLP 347
           ++     G   P   +  ++  L+++ N  SG +PK + +    L   ++ +N ++G +P
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIP 673

Query: 348 SCLSN 352
             + +
Sbjct: 674 DEVGD 678

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (441), Expect = 2e-45
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 12/243 (4%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
             +L+ L L + G  G +P  +     L  L LS N+L G++P  + ++ KL+ L L  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSS 235
                IP     + +L  L +  N L G  PS +   + L+ + LS N ++G +P  +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 236 LGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF 291
           L +L +L LS+N    N+P         L+   L+ N F+G IP    +        ++ 
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQ----SGKIAA 567

Query: 292 NALRGMPPPAIFSLPNISDLNLASN--KFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC 349
           N + G     I +     + + A N  +F G   + LN        +I++    G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 350 LSN 352
             N
Sbjct: 628 FDN 630

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (420), Expect = 8e-43
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLI 172
            L+  T+L  +SL +  + G +P  I RL +L  L LS+N   G++P ++     L  L 
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 173 LDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI--SGSL 230
           L+ N FN TIP             +  N +AG     I+      +   + N +   G  
Sbjct: 545 LNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 231 P-DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF---LSNNSFSGEIPKQYGQLNQLQQ 286
              L+ L + N  N++      +               +S N  SG IPK+ G +  L  
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL 346
           L++  N + G  P  +  L  ++ L+L+SNK  G +P+ ++    L   D+SNN L+G +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 347 PS 348
           P 
Sbjct: 721 PE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 3e-40
 Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 21/269 (7%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
           SLS N         + RL +L +L L +    G++P ++    SL +LDL++N   G++P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 160 PKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN--KLAGPFPSSIQRISTLS 217
             +      Q+  +  NF       +  +           N  +  G     + R+ST +
Sbjct: 556 AAMF----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 218 DLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSNNSFSG 272
             +++     G       + GS+  L++S N L   +P     +   L +  L +N  SG
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISG 670

Query: 273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL 332
            IP + G L  L  LD+S N L G  P A+ +L  +++++L++N  SG +P+     G+ 
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE----MGQF 726

Query: 333 VFFDIS----NNKLTGG-LPSCLSNESDK 356
             F  +    N  L G  LP C  + +D 
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (289), Expect = 2e-26
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD 250
           S+   S   N       SS+  ++ L  L LS + I+GS+       SL  L+LS N L 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113

Query: 251 SNLPKLP-----RGLVMAFLSNNSFSGEIPKQYG-QLNQLQQLDMSFNALRGMPPPAIF- 303
             +  L       GL    +S+N+         G +LN L+ LD+S N++ G        
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 304 --SLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDISNNKLTGGLPS 348
                 +  L ++ NK SG +          L F D+S+N  + G+P 
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 6e-21
 Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 28/195 (14%)

Query: 79  KIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI 138
            I G +   + N       + + +           L RL++    ++ S    G      
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 139 HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR 198
               S+ +LD+S N L G +P +I                         S+P L  L++ 
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIG------------------------SMPYLFILNLG 664

Query: 199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLP 257
           +N ++G  P  +  +  L+ LDLS N + G +P  +S+L  L  ++LS+N L      +P
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG---PIP 721

Query: 258 RGLVMAFLSNNSFSG 272
                       F  
Sbjct: 722 EMGQFETFPPAKFLN 736

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 2e-53
 Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 32/331 (9%)

Query: 28  SSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSN 87
               Q LLQ++K L  P  L  W     D C  +      + C            D  + 
Sbjct: 5   PQDKQALLQIKKDLGNPTTLSSW-LPTTDCCNRTWL---GVLC------------DTDTQ 48

Query: 88  VGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSL-GIWGSLPDKIHRLYSLEY 146
               +    +  +L + + I S    LA L  L  L +  +  + G +P  I +L  L Y
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSS---LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 147 LDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPF 206
           L ++   + G++P  +S +  L TL    N  + T+P    SLP+L  ++   N+++G  
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 207 PSSIQRISTLS-DLDLSKNAISGSLPDLSSLGSLN--VLNLSDNKLDSNLPKL---PRGL 260
           P S    S L   + +S+N ++G +P   +  +LN   ++LS N L+ +   L    +  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG 320
               L+ NS + ++ K  G    L  LD+  N + G  P  +  L  +  LN++ N   G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 321 SLPKNLNCGGKLVFFDISNNKLTGG--LPSC 349
            +P+  N   +      +NNK   G  LP+C
Sbjct: 283 EIPQGGNL-QRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (455), Expect = 1e-50
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 132 GSLPDKIHRLYSLEYLDLSSNFLFGS--VPPKISTMVKLQTLIL-DDNFFNNTIPNWFDS 188
           G L D   + Y +  LDLS   L     +P  ++ +  L  L +   N     IP     
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDN 247
           L  L +L + +  ++G  P  + +I TL  LD S NA+SG+LP  +SSL +L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 248 KLD-------SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
           ++         +  KL   +    +S N  +G+IP  +  LN L  +D+S N L G    
Sbjct: 160 RISGAIPDSYGSFSKLFTSM---TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
              S  N   ++LA N  +  L K       L   D+ NN++ G LP  L+ 
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (345), Expect = 9e-36
 Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 33/229 (14%)

Query: 147 LDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN--NTIPNWFDSLPSLTFLSMRN-NKLA 203
            D  +    G +    +   ++  L L          IP+   +LP L FL +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 204 GPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVM 262
           GP P +I +++ L  L ++   +SG++PD LS + +L  L+ S                 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS----------------- 133

Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN-ISDLNLASNKFSGS 321
                N+ SG +P     L  L  +    N + G  P +  S     + + ++ N+ +G 
Sbjct: 134 ----YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 322 LPK---NLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS 367
           +P    NLN    L F D+S N L G       ++ + + +    N L+
Sbjct: 190 IPPTFANLN----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 40/154 (25%), Positives = 53/154 (34%), Gaps = 27/154 (17%)

Query: 206 FPSSIQRISTLSD----LDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGL 260
               +   +TLS      D       G L D  +    +N L+LS   L           
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL----------- 62

Query: 261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMS-FNALRGMPPPAIFSLPNISDLNLASNKFS 319
                        IP     L  L  L +   N L G  PPAI  L  +  L +     S
Sbjct: 63  --------PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 320 GSLPKNL-NCGGKLVFFDISNNKLTGGLPSCLSN 352
           G++P  L      LV  D S N L+G LP  +S+
Sbjct: 115 GAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISS 147

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  175 bits (445), Expect = 4e-49
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 29/291 (9%)

Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCL-PSSKKYTVRNLKLR 529
           + F+L EL+ A++NF    I+G G +GK+YKGRL +GT VA++ L     +      +  
Sbjct: 18  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTE 77

Query: 530 LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK-VLN 588
           +++++   H +L+ L G C+    R         LVY +M+NG+  + + E    +  L+
Sbjct: 78  VEMISMAVHRNLLRLRGFCMTPTER--------LLVYPYMANGSVASCLRERPESQPPLD 129

Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS 648
           W +R  + +G A+ + +LH    P   +  VK  NILL+E   A + D+GL+ + +  ++
Sbjct: 130 WPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT 189

Query: 649 -----VGGKQ-----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS 698
                V G       E  ++ + ++ + DVF +G MLLE + G   A    +   ++   
Sbjct: 190 HVTTAVRGTIGHIAPEYLSTGKSSE-KTDVFGYGVMLLELITGQR-AFDLARLANDDDVM 247

Query: 699 LNS------QEGR-QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS 742
           L        +E + + LVD  +      E +  +I +A  C  S    RP 
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPK 298

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  172 bits (439), Expect = 2e-48
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 45/309 (14%)

Query: 471 RSFTLEELKEATNNFD------MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTV- 523
            SF+  ELK  TNNFD          MGEG +G +YKG + N T+VA++ L +    T  
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTE 71

Query: 524 ---RNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
              +     + ++AK +H +LV LLG   DG            LVY +M NG+    +S 
Sbjct: 72  ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDL--------CLVYVYMPNGSLLDRLSC 123

Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHTG-VIPGFFNNR-VKTNNILLNEHRIAKLSDYG 638
                 L+W  R  +  G A  + FLH    I     +R +K+ NILL+E   AK+SD+G
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHENHHI-----HRDIKSANILLDEAFTAKISDFG 178

Query: 639 LS-IVSEDINS-----VGGKQ--EDPNSWE-MT-KLED--DVFSFGFMLLESVAG--PSV 684
           L+    +   +     + G      P   E +  ++    D++SFG +LLE + G     
Sbjct: 179 LARASEKFAQTVMTSRIVGTTAYMAP---EALRGEITPKSDIYSFGVVLLEIITGLPAVD 235

Query: 685 AARKGQFLQEELDSLNSQEGR-QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSF 743
             R+ Q L +  + +  +E   +  +D   M  +   S+  + S+A++C+  +   RP  
Sbjct: 236 EHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQCLHEKKNKRPDI 294

Query: 744 EDILWNLQY 752
           + +   LQ 
Sbjct: 295 KKVQQLLQE 303

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  144 bits (365), Expect = 2e-38
 Identities = 53/311 (17%), Positives = 120/311 (38%), Gaps = 42/311 (13%)

Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDL 532
              E L   +    +  +   G +G ++K +L     VA++  P   K + +N +  +  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSWQN-EYEVYS 71

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
           L  ++H +++  +G    G   D      ++L+  F   G+    +  N     ++W+E 
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDV----DLWLITAFHEKGSLSDFLKANV----VSWNEL 123

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNR-------VKTNNILLNEHRIAKLSDYGLSIV--- 642
             +   +A+ + +LH  +      ++       +K+ N+LL  +  A ++D+GL++    
Sbjct: 124 CHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEA 183

Query: 643 ---SEDINSVGG---------KQEDPNSWEMTKLEDDVFSFGFMLLESVAG--PSVAARK 688
              + D +   G          +   N      L  D+++ G +L E  +    +     
Sbjct: 184 GKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVD 243

Query: 689 GQFL--QEELDSLNSQEGRQRLV-----DPVVMAT-SSLESLSIVISIANKCICSESWSR 740
              L  +EE+    S E  Q +V      PV+         ++++     +C   ++ +R
Sbjct: 244 EYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEAR 303

Query: 741 PSFEDILWNLQ 751
            S   +   + 
Sbjct: 304 LSAGCVGERIT 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (375), Expect = 2e-37
 Identities = 45/277 (16%), Positives = 99/277 (35%), Gaps = 27/277 (9%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
            +  +  +   +       +             +   K   L  L  +++ +      +P
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 160 PKISTMVKLQTLILDDNFF--------NNTIPNWFDSLPSLTFLSMRNNKLA-GPFPSSI 210
             +  + ++Q + +  N          +            +  + +  N L   P  +S+
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 211 QRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS---NLPKLPRGLVMAFLSN 267
           Q++  L  L+   N + G LP   S   L  LNL+ N++     N       +     ++
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 268 NSFSGEIPKQY--GQLNQLQQLDMSFNALRGMP-------PPAIFSLPNISDLNLASNKF 318
           N     IP  +    ++ +  +D S+N +  +         P  F   N+S +NL++N+ 
Sbjct: 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 319 SGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESD 355
           S    +  + G  L   ++  N LT    + L +E++
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (337), Expect = 1e-32
 Identities = 40/270 (14%), Positives = 79/270 (29%), Gaps = 17/270 (6%)

Query: 98  NASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFG- 156
           N +   +        +L     +  LSL   G  G +PD I +L  LE L L S+     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 157 ---SVPPKISTMVKLQTLILDDNFFNNTIPNWFD--SLPSLTFLSMRNNKLAGPFPSSIQ 211
                P  IS  +  +        +  T  ++        L    + ++        S +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 212 RISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
                + +    N I+     +  L  L    + ++   +                    
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQY 238

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF--------SGSLP 323
                ++  L  L  +++         P  + +LP +  +N+A N+              
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 324 KNLNCGGKLVFFDISNNKLTGG-LPSCLSN 352
            +   G K+    I  N L    + + L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  133 bits (337), Expect = 1e-32
 Identities = 51/291 (17%), Positives = 95/291 (32%), Gaps = 55/291 (18%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSL-------VSLGIWGSLPDKIHRLYSLEYLDLSSN 152
               N  ++  +        L  L+L       +     G           +E L  + N
Sbjct: 336 ECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE-------QVENLSFAHN 387

Query: 153 FLFGSVPPK--ISTMVKLQTLILDDNFFNNTIPNWFDSLP-------SLTFLSMRNNKLA 203
            L   +P      ++  +  +    N   +     FD L        +++ +++ NN+++
Sbjct: 388 KL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 204 GPFPSSIQRISTLSDLDLSKNAISG--------SLPDLSSLGSLNVLNLSDNKL------ 249
                     S LS ++L  N ++            +  +   L  ++L  NKL      
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 250 --DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQL------DMSFNALRGMPPPA 301
              + LP L  G+    LS NSFS   P Q    + L+        D   N      P  
Sbjct: 507 FRATTLPYL-VGI---DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 302 IFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
           I   P+++ L + SN     + + +     +   DI +N       S +  
Sbjct: 562 ITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (329), Expect = 1e-31
 Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 33/268 (12%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDK--IHRLYSLEYLDLSSNFL-------FGSVPPKIS 163
                  +  LS     +   +P+      +  +  +D S N +       F  + P   
Sbjct: 372 FCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-------PFPSSIQRISTL 216
             + + ++ L +N  +      F +   L+ +++  N L             + +    L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 217 SDLDLSKNAISGSLPDL--SSLGSLNVLNLSDNKLDS------NLPKLPRGLVMAF---L 265
           + +DL  N ++    D   ++L  L  ++LS N          N   L +G  +      
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL-KGFGIRNQRDA 549

Query: 266 SNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKN 325
             N    E P+       L QL +  N +R +        PNIS L++  N         
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNISIDLSY 606

Query: 326 LNCGGKLVFFDISNNKLTGGLPSCLSNE 353
           +    +   + +  +K    +  C + +
Sbjct: 607 VCPYIEAGMYMLFYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (270), Expect = 2e-24
 Identities = 32/230 (13%), Positives = 64/230 (27%), Gaps = 40/230 (17%)

Query: 103 ENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL-------F 155
           +  + D    T  +  ++  ++L +  I     +       L  ++L  N L        
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 156 GSVPPKISTMVKLQTLILDDNFFNNTIPNW-FDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
                       L ++ L  N       ++   +LP L  + +  N  +  FP+     S
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 215 TLSDL------DLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSN 267
           TL         D   N      P+ ++   SL  L +  N +      +   +       
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK----VNEKI------- 585

Query: 268 NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK 317
                           +  LD+  N    +    +          L  +K
Sbjct: 586 -------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 6/110 (5%)

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP----PPAIFSLPNISDLNLASNKFSG 320
           L     SG +P   GQL +L+ L +  +  +       P  I +  +          +  
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 321 SLPKNLNCGG--KLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
           +            L+   I+++     +            +    N ++ 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (371), Expect = 8e-37
 Identities = 64/269 (23%), Positives = 99/269 (36%), Gaps = 20/269 (7%)

Query: 100 SLSENF----SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLF 155
           SLS +F    ++ +        + L +L+L    I     D    L  LE LDL  N + 
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

Query: 156 GSVPPK-ISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG--PFPSSIQR 212
             +  +    +  +  + L  N +     N F  +PSL  L +R   L      PS  Q 
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 213 ISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF------- 264
           +  L+ LDLS N I+    D L  L  L +L+L  N L         G  + F       
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 265 ----LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG 320
               L +N F     + +  L +L+ +D+  N L  +P     +  ++  LNL  N  + 
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 321 SLPKNLNCG-GKLVFFDISNNKLTGGLPS 348
              K        L   D+  N       S
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (363), Expect = 8e-36
 Identities = 57/316 (18%), Positives = 109/316 (34%), Gaps = 21/316 (6%)

Query: 70  CQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLG 129
           C    +T+  +  D P+N+   +        L+ N           R + L  L +    
Sbjct: 11  CSHLKLTQ--VPDDLPTNITVLN--------LTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 130 IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL 189
           I    P+   +L  L+ L+L  N L        +    L  L L  N       N F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD---LSSLGSLNVLNLSD 246
            +L  L + +N L+     +  ++  L +L LS N I     +   + +  SL  L LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 247 NKLDSNLPKLPRGLVM---AFLSNNSFSGEIPKQYG---QLNQLQQLDMSFNALRGMPPP 300
           N++    P     +      FL+N      + ++         ++ L +S + L      
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 301 AIFSL--PNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRV 358
               L   N++ L+L+ N  +     +     +L +F +  N +       L    + R 
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 359 VKFRGNCLSSNVQNQH 374
           +  + +    ++    
Sbjct: 301 LNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (342), Expect = 3e-33
 Identities = 60/295 (20%), Positives = 102/295 (34%), Gaps = 30/295 (10%)

Query: 100 SLSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGS 157
           SLS +   +  +      + T+L +L L    +     D    L  LEY  L  N +   
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 158 VPPKISTMVKLQTLILDDNFFNNTI---------PNWFDSLPSLTFLSMRNNKLAGPFPS 208
               +  +  ++ L L  +F   +I            F  L  L  L+M +N + G   +
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 209 SIQRISTLSDLDLSKNAISGSLPDLSSLG-----SLNVLNLSDNKLD-------SNLPKL 256
               +  L  L LS +  S       +        L++LNL+ NK+        S L  L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 257 PRGLVMAFLSNNSFSGEIPKQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
              L    L  N    E+  Q    L  + ++ +S+N    +   +   +P++  L L  
Sbjct: 408 -EVL---DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 316 NKFSG--SLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
                  S P        L   D+SNN +       L       ++  + N L+ 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 2e-29
 Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 27/231 (11%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
           S E  D S   L   VP  + T   +  L L  N         F     LT L +  N +
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLV 261
           +   P   Q++  L  L+L  N +S       +   +L  L+L  N +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK---------- 111

Query: 262 MAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
              + NN F             L  LD+S N L          L N+ +L L++NK    
Sbjct: 112 ---IKNNPFVK--------QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 322 LPKNLNCGG--KLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
             + L+      L   ++S+N++    P C         +      L  ++
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 5e-19
 Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 12/185 (6%)

Query: 100 SLSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL--- 154
            L      ++DS  +    L +L +L L +  I     D +  L  LE LDL  N L   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 155 -----FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSS 209
                 G     +  +  L  L L+ N F+      F  L  L  + +  N L     S 
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 210 IQRISTLSDLDLSKNAISGSLPDL--SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSN 267
                +L  L+L KN I+     +   +  +L  L++  N  D     +   +     ++
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 639

Query: 268 NSFSG 272
            +   
Sbjct: 640 TNIPE 644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (362), Expect = 2e-35
 Identities = 63/403 (15%), Positives = 125/403 (31%), Gaps = 63/403 (15%)

Query: 6   GNLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQ 65
           G L     L+  +     H+++    ++ L   + L     L+  IN   +   I   ++
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 66  VN-----ITCQDNFITELKIIGDKPSNVGNF-----------------DGFASANASLSE 103
           ++     I    N IT +         +                          +A+   
Sbjct: 423 ISLKDTQIGNLTNRITFI------SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 104 NFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS 163
               ++   + + L  L  + L +      LPD ++ L  L+ L+++ N           
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG--------- 527

Query: 164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLS 222
                             + +  D+ P +    M  N L   P  +S+Q++  L  LD  
Sbjct: 528 ------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 223 KNAISGSLPDLSSLGSLNVLNLSDNKLDS---NLPKLPRGLVMAFLSNNSFSGEIPKQY- 278
            N +   L    +   L  L L  N+++    +       +     S+N     IP  + 
Sbjct: 582 HNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639

Query: 279 -GQLNQLQQLDMSFNALRGMPP-----PAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL 332
              +  +  +D S+N +             +   N S + L+ N+      +    G  +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 333 VFFDISNNKLT-------GGLPSCLSNESDKRVVKFRGNCLSS 368
               +SNN +T               N      +  R N L+S
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (318), Expect = 5e-30
 Identities = 40/282 (14%), Positives = 81/282 (28%), Gaps = 21/282 (7%)

Query: 82  GDKPSNVGNFDGFASANASLSENFSIDSFV----TTLARLTSLRVLSLVSLGIWGSLPDK 137
           G               + + + N  +D +       L     +  LSL   G  G +PD 
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF-DSLPSLTFLS 196
           I +L  L+ L   ++    S        +         +         F D    L    
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 197 MRNNKL-----AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS 251
           +  + +       P     +     + +    N I+     +  L  L ++  +++    
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 252 NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDL 311
           +   +      A              +  L  L  +++         P  ++ LP +  L
Sbjct: 463 DNIAV--DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 312 NLASNKFSG---------SLPKNLNCGGKLVFFDISNNKLTG 344
           N+A N+             L  + + G K+  F +  N L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  125 bits (315), Expect = 1e-29
 Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 34/293 (11%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWG------SLPDKIHRLYSLEYLDLSSNF 153
            L ++    +    +  +     +SL    I         +   I RL  L+ +  +++ 
Sbjct: 402 DLLQDAI--NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 154 LFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRI 213
                       V  +    D           + +L  LT + + N       P  +  +
Sbjct: 460 FTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 214 STLSDLDLSKNAISG---------SLPD-LSSLGSLNVLNLSDNKLDS-----NLPKLPR 258
             L  L+++ N              L D   +   + +  +  N L+      +L K+ +
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 259 GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
            L +    +N     +   +G   +L  L + +N +  +P         +  L  + NK 
Sbjct: 575 -LGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 319 SGSLPKNLNCGG--KLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN 369
              +P   N      +   D S NK+     +   +  D + +      LS N
Sbjct: 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 2e-29
 Identities = 51/290 (17%), Positives = 99/290 (34%), Gaps = 42/290 (14%)

Query: 109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPK--ISTM 165
             +        L  L L    I   +P+        +E L  S N L   +P      ++
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSV 643

Query: 166 VKLQTLILDDNFFNNTIPNWFDSLP-----SLTFLSMRNNKLAGPFPSSIQRISTLSDLD 220
             + ++    N   +   N   S+      + + +++  N++           S +S + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 221 LSKNAISGSLPD---------LSSLGSLNVLNLSDNKL--------DSNLPKLPRGLVMA 263
           LS N ++ S+P+           +   L  ++L  NKL         + LP L   +   
Sbjct: 704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL-SNM--- 758

Query: 264 FLSNNSFSGEIPKQYGQLNQLQQL------DMSFNALRGMPPPAIFSLPNISDLNLASNK 317
            +S N FS   P Q    +QL+        D   N +    P  I + P++  L + SN 
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 318 FSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS 367
               + + L    +L   DI++N       + +    +  +     +   
Sbjct: 818 IR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (298), Expect = 1e-27
 Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 40/267 (14%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDK--IHRLYSLEYLDLSSNFLFGSVPPKIST----- 164
              A    +  L      +   +P+      +Y +  +D S N + GS    IS      
Sbjct: 613 DFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDY 670

Query: 165 -MVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL-------AGPFPSSIQRISTL 216
             +   T+ L  N         F +   ++ + + NN +         P   + +    L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 217 SDLDLSKNAISGSLPD---LSSLGSLNVLNLSDNKLDS------NLPKLPRGLVMA---F 264
           + +DL  N ++ SL D    ++L  L+ +++S N   S      N  +L +   +     
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL-KAFGIRHQRD 788

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS----G 320
              N    + P        L QL +  N +R +        P +  L++A N        
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVT 845

Query: 321 SLPKNLNCGGKLVFFDISNNKLTGGLP 347
           S+   +  G  +        +   G  
Sbjct: 846 SVCPYIEAG--MYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 5e-20
 Identities = 33/269 (12%), Positives = 70/269 (26%), Gaps = 29/269 (10%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
            A       L   +   +    +      +    +   +         +    ++  L L
Sbjct: 272 KALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSL 330

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD- 232
                   +P+    L  L  LS   +              T    +  K+ I       
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 233 -LSSLGSLNVLNLSDNKLDSNLPKLP-RGLVMAFLSNNSFSG------EIPKQYGQLNQL 284
            L     LN+ +L  + ++ N    P +      L +            I K   +L +L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 285 QQLDMSFNALRGMP-------------------PPAIFSLPNISDLNLASNKFSGSLPKN 325
           Q +  + +                           +  +L +++D+ L +      LP  
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 326 LNCGGKLVFFDISNNKLTGGLPSCLSNES 354
           L    +L   +I+ N+             
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 18/169 (10%), Positives = 55/169 (32%), Gaps = 4/169 (2%)

Query: 205 PFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSL-NVLNLSDNKLDSNLP-KLPRGLVM 262
            F     +++  +++ +     +  + D  +L ++   L+  + +  S         L  
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302

Query: 263 AFLSNNSFSGEIPK-QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
            F       G+ P        ++  L ++    +G  P AI  L  +  L+  ++  + S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 322 LPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDK-RVVKFRGNCLSSN 369
                +        +   +++         +   +  +     + ++ N
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 5e-34
 Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 18/269 (6%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLV--SLGIWGSLPDKIHRLYSLEYLDLSSNFLFGS 157
            L+   +      +   L SL  L L    L   G          SL+YLDLS N +   
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 158 VPPKISTMVKLQTLILDDNFFNNTIPNW-FDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
           +      + +L+ L    +          F SL +L +L + +      F      +S+L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRG---LVMAFLSNNSFS 271
             L ++ N+   +      + L +L  L+LS  +L+   P        L +  +S+N+F 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLP-NISDLNLASNKFSGSLP-----KN 325
                 Y  LN LQ LD S N +       +   P +++ LNL  N F+ +       + 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 326 LNCGGKLVFFDISNNKLTGGLPSCLSNES 354
           +          +   ++    PS      
Sbjct: 568 IK---DQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (326), Expect = 2e-31
 Identities = 53/276 (19%), Positives = 91/276 (32%), Gaps = 30/276 (10%)

Query: 104 NFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSS------------ 151
           ++ +D  +     LT++   SLVS+ I           +  ++L+L +            
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 152 -------NFLFGSVPPKISTMVKLQTLILDDNFFN--NTIPNWFDSLPSLTFLSMRNNKL 202
                      G        +  L+ L L  N  +             SL +L +  N +
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRG- 259
                S+   +  L  LD   + +          SL +L  L++S          +  G 
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 260 --LVMAFLSNNSFSGEIPKQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
             L +  ++ NSF          +L  L  LD+S   L  + P A  SL ++  LN++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 317 KFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
            F         C   L   D S N +       L +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (317), Expect = 3e-30
 Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 18/251 (7%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
            +      L+VL L    I          L  L  L L+ N +        S +  LQ L
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGSL 230
           +  +    +        L +L  L++ +N +     P     ++ L  LDLS N I    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 231 P-DLSSLGSLNV----LNLSDNKLDSNLPKLPRG--LVMAFLSNNSFSGEIPKQ-YGQLN 282
             DL  L  + +    L+LS N ++   P   +   L    L NN  S  + K     L 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 283 QLQQLDMSFNALRG---MPPPAIFSLPNISDLNLASNKFS------GSLPKNLNCGGKLV 333
            L+   +     R    +      +L  + +L +   + +        +    NC   + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 334 FFDISNNKLTG 344
            F + +  +  
Sbjct: 286 SFSLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (314), Expect = 6e-30
 Identities = 51/239 (21%), Positives = 81/239 (33%), Gaps = 14/239 (5%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF 177
            S + L L    +             L+ LDLS   +         ++  L TLIL  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSS 235
             +     F  L SL  L      LA      I  + TL +L+++ N I         S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 236 LGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
           L +L  L+LS NK+ S        L ++P   +   LS N  +   P  + ++  L +L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 289 MSFNALRGMPPPAIF-SLPNISDLNLASNKFSGS---LPKNLNCGGKLVFFDISNNKLT 343
           +  N             L  +    L   +F         + +    L    I   +L 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 1e-27
 Identities = 55/287 (19%), Positives = 94/287 (32%), Gaps = 24/287 (8%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDK-IHRLYSLEYLDLSSNFLFGS- 157
            LS N  ++       +   L  L+L +     ++    I  L  LE   L         
Sbjct: 183 DLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 158 --VPPKISTMVKLQTLILDDN------FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSS 209
                  S +  L  L +++       ++ + I + F+ L +++  S+ +  +      S
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 210 IQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLS 266
                    L+L            L SL  L   +       S  +LP L   L    LS
Sbjct: 302 YN--FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL-EFL---DLS 355

Query: 267 NN--SFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
            N  SF G   +       L+ LD+SFN +  M       L  +  L+   +        
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 325 NLNCG-GKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
           ++      L++ DIS+           +  S   V+K  GN    N 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 6e-14
 Identities = 19/112 (16%), Positives = 31/112 (27%)

Query: 241 VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
                +         LP       LS N         +    +LQ LD+S   ++ +   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 301 AIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
           A  SL ++S L L  N          +    L         L       + +
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (333), Expect = 2e-32
 Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 13/276 (4%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
            L+    +    + L  L++L+ L L +               SL +L +  N     + 
Sbjct: 284 DLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 160 PK-ISTMVKLQTLILDDNFFNNT--IPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
              +  +  L+ L L  +    +        +L  L  L++  N+       + +    L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRG---LVMAFLSNNSFS 271
             LDL+   +          +L  L VLNLS + LD +  +L  G   L    L  N F 
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 272 GEIPKQYG---QLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC 328
               ++      L +L+ L +SF  L  +   A  SL  ++ ++L+ N+ + S       
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALS 521

Query: 329 GGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGN 364
             K ++ ++++N ++  LPS L   S +R +  R N
Sbjct: 522 HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  117 bits (296), Expect = 1e-27
 Identities = 53/250 (21%), Positives = 82/250 (32%), Gaps = 10/250 (4%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
           TT +RL +L  L L    I+    D     + L+ L L++N L       +S    L+ L
Sbjct: 51  TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
                  ++       +  +L  L + +N ++            L  LD   NAI     
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 232 -DLSSLGSLNV--LNLSDNKLDSNLPKLPRGLVMA--FLSNNSFSGEIPKQYG--QLNQL 284
            D+SSL       LNL+ N +    P      V              I K      +  L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 285 QQLDMSFNALRGMPPPAIFSLPNIS--DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKL 342
                       + P     L  +S   +NL  + F        +C   L   D++   L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 343 TGGLPSCLSN 352
           +  LPS L  
Sbjct: 291 S-ELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (284), Expect = 3e-26
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 20/237 (8%)

Query: 100 SLSEN-FSIDSFVTTLARLTSLRVLSLVS--LGIWGSLPDKIHRLYSLEYLDLSSNFLFG 156
           S+  N   ++     L  L +LR L L    +        ++  L  L+ L+LS N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
                     +L+ L L           + F +L  L  L++ ++ L          +  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 216 LSDLDLSKNAISGSLPD----LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAF 264
           L  L+L  N            L +LG L +L LS   L S       +L  +   +    
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-NHV---D 506

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
           LS+N  +    +    L  +  L+++ N +  + P  +  L     +NL  N    +
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (284), Expect = 3e-26
 Identities = 50/272 (18%), Positives = 98/272 (36%), Gaps = 20/272 (7%)

Query: 113 TLARLTSLRVLSL-VSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS--TMVKLQ 169
            ++ L     LSL ++      +          + L+         +   +   T+  L 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 170 TLILDDNFFNNTIPNWFDSLP--SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS 227
               +D    +  P  F+ L   S+  ++++ +       ++    S L +LDL+   +S
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 228 GSLPDLSSLGSLNVLNLSDNKLD-------SNLPKLPRGLVMAFLSNNSFSGEIPKQY-G 279
                L  L +L  L LS NK +       SN P L   L    +  N+   E+      
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-THL---SIKGNTKRLELGTGCLE 347

Query: 280 QLNQLQQLDMSFNALRGMP--PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI 337
            L  L++LD+S + +         + +L ++  LNL+ N+      +      +L   D+
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 338 SNNKLTG-GLPSCLSNESDKRVVKFRGNCLSS 368
           +  +L      S   N    +V+    + L  
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 7e-12
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 22/156 (14%)

Query: 214 STLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG 272
           ++   L+ S N +        S L +L  L+L+  ++               +  ++F  
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-------------IHEDTFQS 79

Query: 273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL 332
                    ++L  L ++ N L  M   A+     +  L       S      L+    L
Sbjct: 80  --------QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 333 VFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
               + +N ++             +V+ F+ N +  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  123 bits (311), Expect = 5e-31
 Identities = 50/317 (15%), Positives = 106/317 (33%), Gaps = 51/317 (16%)

Query: 473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDL 532
               E     +N  +  ++G G YG +YKG L +   VA++    + +    N +  +  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFIN-EKNIYR 60

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
           +  + H ++   +               +  LV E+  NG+   ++S +T     +W   
Sbjct: 61  VPLMEHDNIARFIVGDERVTADGR---MEYLLVMEYYPNGSLXKYLSLHT----SDWVSS 113

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNR------VKTNNILLNEHRIAKLSDYGLSIVSEDI 646
             +   V + + +LHT +  G           + + N+L+       +SD+GLS+     
Sbjct: 114 CRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGN 173

Query: 647 NSVGGKQEDPNS-----------------------WEMTKLEDDVFSFGFMLLESVAGPS 683
             V   +ED  +                        E    + D+++ G +  E     +
Sbjct: 174 RLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCT 233

Query: 684 VAARKGQF------LQEELDSLNSQEGRQRLVD-----PVVMAT--SSLESLSIVISIAN 730
                          Q E+ +  + E  Q LV      P        +  ++  +     
Sbjct: 234 DLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIE 293

Query: 731 KCICSESWSRPSFEDIL 747
            C   ++ +R + +   
Sbjct: 294 DCWDQDAEARLTAQXAE 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 5e-29
 Identities = 42/237 (17%), Positives = 90/237 (37%), Gaps = 10/237 (4%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
           ++ +        +   ++ + L  ++     +   ++ L L  N  +            L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSN 252
             L++ +N L       ++ +STL  LDL+ N +     +L    S+  L+ ++N +   
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRV 114

Query: 253 LPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS-LPNISDL 311
                +G    +L+NN  +       G  +++Q LD+  N +  +    + +    +  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
           NL  N     +   +    KL   D+S+NKL   +     + +    +  R N L  
Sbjct: 175 NLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 7e-25
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 19/243 (7%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
              L  L++LR L L +  +      ++    S+E L  ++N +   V    S     + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSC--SRGQGKKN 124

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGS 229
           + L +N               + +L ++ N++    F        TL  L+L  N I   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 230 LPDLSSLGSLNVLNLSDNKL---DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
           +        L  L+LS NKL             +    L NN     I K       L+ 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 287 LDMSFNALRGMPPPAIFS-LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGG 345
            D+  N          FS    +  +   + K    L         +             
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCED 298

Query: 346 LPS 348
           LP+
Sbjct: 299 LPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 31/228 (13%), Positives = 61/228 (26%), Gaps = 29/228 (12%)

Query: 112 TTLARLTSLRVLSL-------VSLGIWGSL--------------PDKIHRLYSLEYLDLS 150
             L    S+  L         VS                              ++YLDL 
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 151 SNFLFG-SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSS 209
            N +   +     ++   L+ L L  NF  +           L  L + +NKLA      
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAF-MGPE 209

Query: 210 IQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPK--LPRGLVMAFLS 266
            Q  + ++ + L  N +   +   L    +L   +L  N       +    +   +  ++
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 267 NNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA 314
             +      +   +                +P P    L  +   +  
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (305), Expect = 8e-29
 Identities = 59/235 (25%), Positives = 87/235 (37%), Gaps = 11/235 (4%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL--FGSVPPKISTMVKLQTLILD 174
           L  L+ L+L       S+  K   L SL YLDLS N L   G           L+ L L 
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGSLPD- 232
            N     +   F  L  L  L  +++ L      S+   +  L  LD+S           
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 233 LSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
              L SLN L ++ N    N           L    LS           +  L++LQ L+
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           MS N L  +       L ++S L+ + N+   S     +    L FF+++NN + 
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (289), Expect = 9e-27
 Identities = 51/277 (18%), Positives = 85/277 (30%), Gaps = 24/277 (8%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
           SL+   SI  ++  + +    + LS++   +    P     L  L+ L L+ N    S+ 
Sbjct: 291 SLAGV-SI-KYLEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKG--SIS 343

Query: 160 PKISTMVKLQTLILDDNFFNNTIPN--WFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLS 217
            K   +  L  L L  N  + +           SL  L +  N       ++   +  L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQ 402

Query: 218 DLDLSKNAISGSLP--DLSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLSNN 268
            LD   + +          SL  L  L++S              L  L   L    ++ N
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTL---KMAGN 458

Query: 269 SFSGEIPKQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN 327
           SF              L  LD+S   L  +      +L  +  LN++ N        + N
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 328 CGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGN 364
               L   D S N++                     N
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 9e-26
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 19/275 (6%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
            + +  + L+ L L    I        H L+ L  L L+ N +    P   S +  L+ L
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISG-- 228
           +  +    +        L +L  L++ +N +     P+    ++ L  +DLS N I    
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 229 --SLPDLSSLGSLNV-LNLSDNKLDSNLPKLPRGLVMAFL--SNNSFSGEIPK-QYGQLN 282
              L  L     +N+ L++S N +D    +  +G+ +  L    N  S  I K     L 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 283 QLQQLDMSFNALRGM------PPPAIFSLPNIS--DLNLASNKFSGSLPKNLNCGGKLVF 334
            L    +     +         P  +  L +++  +  L             +C   +  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 335 FDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN 369
             ++   +       +      + +      L   
Sbjct: 290 MSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQF 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (278), Expect = 2e-25
 Identities = 49/269 (18%), Positives = 87/269 (32%), Gaps = 19/269 (7%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF 177
           +S + + L    +             L++LDLS   +          +  L  LIL  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSS 235
             +  P  F  L SL  L     KLA      I ++ TL  L+++ N I         S+
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 236 LGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
           L +L  ++LS N + +        L + P+  +   +S N     I  Q  Q  +L +L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 289 MSFNALRGMPPPAIFS-LPNISDLNLASNKFSG-----SLPKNLN---CGGKLVFFDISN 339
           +  N             L  +    L   +F           ++    C   +  F ++ 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 340 NKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
                         ++   +   G  +  
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (255), Expect = 1e-22
 Identities = 52/283 (18%), Positives = 88/283 (31%), Gaps = 19/283 (6%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDK-IHRLYSLEYLDLSSNFLFGSV- 158
           +S N  ID       +   L  L+L       ++    +  L  L    L          
Sbjct: 188 MSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 159 -----PPKISTMVKLQTLILDDNFFNNT--IPNWFDSLPSLTFLSMRNNKLAGPFPSSIQ 211
                P  +  +  +        + N+       F  L +++ +S+    +   +   + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVP 304

Query: 212 RISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP-RGLVMAFLSNN-- 268
           +      L + +  +    P L  L  L  L L+ NK   +  K+    L    LS N  
Sbjct: 305 KHFKWQSLSIIRCQLK-QFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362

Query: 269 SFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC 328
           SFSG         N L+ LD+SFN    M       L  +  L+   +        +   
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 329 G-GKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV 370
              KL++ DIS               +    +K  GN    N 
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 4e-20
 Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 3/155 (1%)

Query: 101 LSEN-FSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
              +     +  +    L  L  L +               L SL  L ++ N    +  
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 160 PKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
             + +    L  L L            FD+L  L  L+M +N L     S   ++ +LS 
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 219 LDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSN 252
           LD S N I  S         SL   NL++N +   
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 4/151 (2%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVS-LGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            +S   +   F      LTSL  L +        +L +      +L +LDLS   L    
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
                T+ +LQ L +  N       + ++ L SL+ L    N++            +L+ 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKL 249
            +L+ N+++  + +      L  +      L
Sbjct: 550 FNLTNNSVA-CICEHQKF--LQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 2/126 (1%)

Query: 228 GSLPDLSSLGSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
           GSL     +         D KL   +P  +P       LS N         +   ++LQ 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSK-VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL 346
           LD+S   +  +   A   L ++S+L L  N      P + +    L        KL    
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 347 PSCLSN 352
              +  
Sbjct: 121 SFPIGQ 126

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  113 bits (285), Expect = 7e-28
 Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 50/285 (17%)

Query: 492 GEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           G+G +G+  K    E G  + ++ L    + T R     + ++  L HP+++  +G    
Sbjct: 19  GKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK 78

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-G 609
                     ++  + E++  G  R  I   +      WS+R++    +A  + +LH+  
Sbjct: 79  DK--------RLNFITEYIKGGTLRGII--KSMDSQYPWSQRVSFAKDIASGMAYLHSMN 128

Query: 610 VIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS---------- 658
           +I     +R + ++N L+ E++   ++D+GL+ +  D  +                    
Sbjct: 129 II-----HRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVV 183

Query: 659 ----W---EMTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
               W   EM          DVFSFG +L E +    V A    +L   +D   +  G  
Sbjct: 184 GNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGR--VNADPD-YLPRTMDFGLNVRGFL 240

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
                                I  +C   +   RPSF  +   L+
Sbjct: 241 DR--YCPPNCP-----PSFFPITVRCCDLDPEKRPSFVKLEHWLE 278

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  112 bits (283), Expect = 2e-27
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 104 NFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYS--LEYLDLSSNFLFGSVPPK 161
           + +        A   + ++ +     +  +  D +          L+L S  L    P +
Sbjct: 42  DRNRWHSAWRQANSNNPQIETRTGRAL-KATADLLEDATQPGRVALELRSVPL-PQFPDQ 99

Query: 162 ISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDL 221
              +  LQ + +D       +P+       L  L++  N L    P+SI  ++ L +L +
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSI 157

Query: 222 SKNAISGSLPD----------LSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSN 267
                   LP+             L +L  L L    + S LP     L + L    + N
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANL-QNLKSLKIRN 215

Query: 268 NSFSGEIPKQYGQLNQLQQLDMS-FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL 326
           +  S  +      L +L++LD+    ALR  PP        +  L L       +LP ++
Sbjct: 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 327 NCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQ 373
           +   +L   D+        LPS ++      ++    +  +   Q++
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 6e-23
 Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 23/222 (10%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
           +     +     T+ +   L  L+L    +  +LP  I  L  L  L + +      +P 
Sbjct: 111 IDAA-GLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPE 168

Query: 161 KI---------STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQ 211
            +           +V LQ+L L+      ++P    +L +L  L +RN+ L+     +I 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 212 RISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLP------RGLVMAF 264
            +  L +LDL       + P        L  L L D    SNL  LP        L    
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC---SNLLTLPLDIHRLTQLEKLD 283

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLP 306
           L        +P    QL     + +  +    +      + P
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 42/254 (16%), Positives = 77/254 (30%), Gaps = 31/254 (12%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
            +    L            D + +       D +                      ++  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-------NSNNPQIETR 63

Query: 177 FFNN--TIPNWFDSL--PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
                    +  +    P    L +R+  L   FP    R+S L  + +    +   LPD
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 233 -LSSLGSLNVLNLSDNKLDSNLP----KLPRGLVMAFLSNNSFSGEIPK---------QY 278
            +     L  L L+ N L + LP     L   L    +       E+P+         ++
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASL-NRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS 338
             L  LQ L + +  +R   P +I +L N+  L + ++  S +L   ++   KL   D+ 
Sbjct: 180 QGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 339 NNKLTGGLPSCLSN 352
                   P     
Sbjct: 238 GCTALRNYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 1/103 (0%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
            +  +  + +    +  L  L  L L       + P        L+ L L       ++P
Sbjct: 212 KIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 160 PKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
             I  + +L+ L L      + +P+    LP+   + +  +  
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 34/92 (36%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
           L    ++ ++         L+ L L       +LP  IHRL  LE LDL        +P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 161 KISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            I+ +     +++  +       +   + P+ 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 35/155 (22%)

Query: 226 ISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLV------------------------ 261
           +  S            L    +   + L      L                         
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN 57

Query: 262 --MAFLSNNSFSGEIPKQYGQLNQ--LQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK 317
             +   +  +             Q     L++    L    P   F L ++  + + +  
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAG 115

Query: 318 FSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
               LP  +     L    ++ N L   LP+ +++
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (289), Expect = 3e-27
 Identities = 42/237 (17%), Positives = 90/237 (37%), Gaps = 10/237 (4%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
           ++ +        +   ++ + L  ++     +   ++ L L  N  +            L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSN 252
             L++ +N L       ++ +STL  LDL+ N +     +L    S+  L+ ++N +   
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRV 114

Query: 253 LPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS-LPNISDL 311
                +G    +L+NN  +       G  +++Q LD+  N +  +    + +    +  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
           NL  N     +   +    KL   D+S+NKL   +     + +    +  R N L  
Sbjct: 175 NLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (263), Expect = 6e-24
 Identities = 42/237 (17%), Positives = 69/237 (29%), Gaps = 16/237 (6%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
              L  L++LR L L +  +      ++    S+E L  ++N +   V    S     + 
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSC--SRGQGKKN 124

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGS 229
           + L +N               + +L ++ N++    F        TL  L+L  N I   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 230 LPDLSSLGSLNVLNLSDNKL---DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
           +        L  L+LS NKL             +    L NN     I K       L+ 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
            D+  N          FS        +A         +N                  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 13/227 (5%)

Query: 109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKL 168
           +F    A   +L  L+L    I+  +  ++     L+ LDLSSN L   + P+  +   +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGV 216

Query: 169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA-GPFPSSIQRISTLSDLDLSKNAIS 227
             + L +N     I        +L    +R N    G       +   +  +        
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 228 GSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSF-------SGEIPKQYGQ 280
            +  +        + +      +         L+      ++        +  +  +   
Sbjct: 276 -TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN 327
             + +++D      R +             L          +     
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 20/210 (9%), Positives = 54/210 (25%), Gaps = 13/210 (6%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
              L+ L L S  +   +  +      + ++ L +N L   +   +     L+   L  N
Sbjct: 190 FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGN 247

Query: 177 FFN-NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG-SLPDLS 234
            F+  T+ ++F     +  ++     +      + +  +  +              P   
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAF-------LSNNSFSGEIPKQYGQLNQLQQL 287
            L +L     +      +  +                     +   I +   +      L
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 288 DMSFNALRGMPPPAIFSLPNISDLNLASNK 317
           +    AL         +   +      +  
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 13/185 (7%), Positives = 44/185 (23%), Gaps = 4/185 (2%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL----FGSVPPKISTMVKL 168
                T   +    +            RL +L+  + +           +  +     + 
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           + +      +   I        +   L  +   L     +  +  + L            
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 229 SLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
                     L +L     + +    +       A    + +  +  +   +  +L++L+
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458

Query: 289 MSFNA 293
              + 
Sbjct: 459 GEADL 463

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  112 bits (282), Expect = 3e-27
 Identities = 49/293 (16%), Positives = 110/293 (37%), Gaps = 44/293 (15%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG 551
           G+G YG+++ G+   G  VA++   ++++ +    +  +     +RH +++  +   I G
Sbjct: 46  GKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFR-ETEIYQTVLMRHENILGFIAADIKG 103

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVI 611
            G       +++L+ ++  NG+   ++   T    L+    L +       +  LHT + 
Sbjct: 104 TGSW----TQLYLITDYHENGSLYDYLKSTT----LDAKSMLKLAYSSVSGLCHLHTEIF 155

Query: 612 PGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSED---------INSVG------- 650
                  +     K+ NIL+ ++    ++D GL++                VG       
Sbjct: 156 STQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPP 215

Query: 651 ---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR 707
               +  + N ++   +  D++SFG +L E            ++     D + S    + 
Sbjct: 216 EVLDESLNRNHFQSYIMA-DMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYED 274

Query: 708 LVDPVVM---------ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           + + V +           SS E L  +  +  +C      SR +   +   L 
Sbjct: 275 MREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLA 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (294), Expect = 4e-27
 Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 12/245 (4%)

Query: 106 SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTM 165
             D         +S+R L L    ++         L  L+ L+L+ N +          +
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313

Query: 166 VKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNA 225
             LQ L L  N       + F  LP + ++ ++ N +A     + + +  L  LDL  NA
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 226 ISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG-EIPKQYGQLNQL 284
           ++     +  + S+  + LS NKL   LPK+     +  LS N     +I     ++  L
Sbjct: 374 LT----TIHFIPSIPDIFLSGNKL-VTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 285 QQLDMSFNALRGMPPPAIFS-LPNISDLNLASNKFSGSLPKNLNCG-----GKLVFFDIS 338
           Q L ++ N           S  P++  L L  N    +    L          L    ++
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 339 NNKLT 343
           +N L 
Sbjct: 489 HNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 1e-22
 Identities = 81/382 (21%), Positives = 134/382 (35%), Gaps = 68/382 (17%)

Query: 101 LSEN--FSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
           LS    FS++S       L  L+VL+L    I     +  + L +L+ L+LS N L    
Sbjct: 273 LSHGFVFSLNSR--VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
                 + K+  + L  N         F  L  L  L +R+N L     ++I  I ++ D
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPD 385

Query: 219 LDLSKN--------AISGSLPDLS--------------SLGSLNVLNLSDNKLDS----N 252
           + LS N         ++ +L  LS               +  L +L L+ N+  S     
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 253 LPKLPRGLVMAFLSNNSFSGEI-----PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN 307
            P     L   FL  N              +  L+ LQ L ++ N L  +PP     L  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN--ESDKRVVKFRGNC 365
           +  L+L SN+ +  L  N      L   DIS N+L    P    +    D    KF   C
Sbjct: 506 LRGLSLNSNRLT-VLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC 563

Query: 366 ------------------LSSNVQNQHPESYC------FEVRTERNQAGSKNVGKLVGII 401
                               +++   +P+S+               +   K++   + I+
Sbjct: 564 ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

Query: 402 VGVLVIMVLLAFGFLVVCRRYC 423
             V + + L+    +   R +C
Sbjct: 624 CTVTLTLFLMTILTVTKFRGFC 645

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.9 bits (249), Expect = 9e-22
 Identities = 49/285 (17%), Positives = 93/285 (32%), Gaps = 29/285 (10%)

Query: 113 TLARLTSLRVLSLVSLGIWGSL--PDKIHRLYSLEYLDLSSNFLFG-SVPPKISTMVKLQ 169
               L  L  L L   G+  ++        L +L  LDLS N +    + P    +  L+
Sbjct: 92  AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 170 TLILDDNFFNNTIPNWFDSL--PSLTFLSMRNNKLAGPFPSSIQRIS------TLSDLDL 221
           ++    N       +  + L   +L+F S+  N L         +         L  LD+
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 222 SKNAISGSLPD-------------LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF---- 264
           S N  +  +               L     +       + +         GL  +     
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 265 -LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
            LS+        + +  L  L+ L++++N +  +   A + L N+  LNL+ N       
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 324 KNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
            N     K+ + D+  N +              + +  R N L++
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 1e-21
 Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 38/277 (13%)

Query: 101 LSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGS 157
           LS N+  ++ +  ++   L  L++L L S     ++  +    L +L  LDL S+ +   
Sbjct: 31  LSFNYIRTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YF 87

Query: 158 VPPKI-STMVKLQTLILDDNFFNNTI--PNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRI 213
           + P     +  L  L L     ++ +    +F +L +LT L +  N++       S  ++
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 214 STLSDLDLSKNAIS----GSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF----- 264
           ++L  +D S N I       L  L    +L+  +L+ N L S +       +  F     
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206

Query: 265 ----LSNNSFSGEIPK------------QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNI 308
               +S N ++ +I                   + +      F+ ++         L   
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 309 S--DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           S   L+L+         +       L   +++ NK+ 
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 34/226 (15%)

Query: 141 LYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTI-PNWFDSLPSLTFLSMR 198
           L + E L LS N++  +V       + +LQ L L   +   TI    F +LP+L  L + 
Sbjct: 23  LNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD---LSSLGSLNVLNLSDNKLDSNLPK 255
           ++K+    P + Q +  L +L L    +S ++       +L +L  L+LS N++ S    
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS---- 137

Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSL--PNISDLNL 313
                      + SF          LN L+ +D S N +  +    +  L    +S  +L
Sbjct: 138 --------LYLHPSFGK--------LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 314 ASNKFSGSLPK------NLNCGGKLVFFDISNNKLTGGLPSCLSNE 353
           A+N     +        N      L   D+S N  T  +    SN 
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 238 SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
              +       L   +P++        LS N         +  L QLQ L++        
Sbjct: 5   DGRIAFYRFCNLTQ-VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 298 PPPAIF-SLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
                F +LPN+  L+L S+K    L  +   G   L    +    L+
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLS 110

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  111 bits (280), Expect = 4e-27
 Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 55/282 (19%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           G GS+G +++    +G+ VA++ L         V      + ++ +LRHP++V  +G   
Sbjct: 46  GAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT 104

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
                       + +V E++S G+    + ++   + L+   RL++   VAK + +LH  
Sbjct: 105 QP--------PNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN- 155

Query: 610 VIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN-SW---E 660
                 N  +     K+ N+L+++    K+ D+GLS + +    +  K       W   E
Sbjct: 156 -----RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL-KASTFLSSKSAAGTPEWMAPE 209

Query: 661 MTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ------EGRQRLV 709
           + + E      DV+SFG +L E            Q     L+    Q         +RL 
Sbjct: 210 VLRDEPSNEKSDVYSFGVILWELAT--------LQQPWGNLNPA--QVVAAVGFKCKRLE 259

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            P     +    ++ +I     C  +E W RPSF  I+  L+
Sbjct: 260 IP----RNLNPQVAAII---EGCWTNEPWKRPSFATIMDLLR 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (282), Expect = 5e-27
 Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 17/260 (6%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
           ++ L+ L  L  L + +  I  +    +  L +L  L L+ + +  S    ++ + K+ +
Sbjct: 81  ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNI--SDISPLANLTKMYS 136

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L  N  N +  +   ++  L +L++  +K+     + I  ++ L  L L+ N I   +
Sbjct: 137 LNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIE-DI 192

Query: 231 PDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
             L+SL SL+      N++   + +  + R L    + NN  +   P     L+QL  L+
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS 348
           +  N +  +    +  L  +  LN+ SN+ S      LN   +L    ++NN+L      
Sbjct: 250 IGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 349 CLSNESDKRVVKFRGNCLSS 368
            +   ++   +    N ++ 
Sbjct: 306 VIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (282), Expect = 5e-27
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 19/237 (8%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
           V T   L S+  L +    +  S+   I  L +LEYL+L+ N +  +    +S +VKL  
Sbjct: 37  VVTQEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQI--TDISPLSNLVKLTN 92

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L +  N    T  +   +L +L  L +  + ++    S +  ++ +  L+L  N     L
Sbjct: 93  LYIGTN--KITDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDL 148

Query: 231 PDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
             LS++  LN L ++++K+   + +  L   L    L+ N      P     L  L    
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTD-LYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDISNNKLTG 344
              N +  + P  + ++  ++ L + +NK +   P  NL+   +L + +I  N+++ 
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS---QLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 7e-27
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 23/236 (9%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           LA LT +  L+L       S    +  +  L YL ++ + +       I+ +  L +L L
Sbjct: 128 LANLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSL 184

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           + N   +  P    SL SL + +   N++     + +  ++ L+ L +  N I+  L  L
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKIT-DLSPL 239

Query: 234 SSLGSLNVLNLSDNKLD-----SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
           ++L  L  L +  N++       +L KL + L    + +N  S         L+QL  L 
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDLTKL-KML---NVGSNQISD--ISVLNNLSQLNSLF 293

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDISNNKLT 343
           ++ N L       I  L N++ L L+ N  +   P  +L+   K+   D +N  + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS---KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 1e-16
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
           +T +A +T L  L + +  I    P  +  L  L +L++ +N +  S    +  + KL+ 
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKM 269

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L +  N  ++ I    ++L  L  L + NN+L       I  ++ L+ L LS+N I+  +
Sbjct: 270 LNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DI 326

Query: 231 PDLSSLGSLNVLNLSDNKL 249
             L+SL  ++  + ++  +
Sbjct: 327 RPLASLSKMDSADFANQVI 345

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  110 bits (276), Expect = 5e-27
 Identities = 57/296 (19%), Positives = 110/296 (37%), Gaps = 66/296 (22%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRL--------DLLA 534
              +    + E   G+L+KGR   G  + +      K   VR+   R           L 
Sbjct: 10  KQLNFLTKLNENHSGELWKGRW-QGNDIVV------KVLKVRDWSTRKSRDFNEECPRLR 62

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
              HP+++ +LG C               L+  +M  G+    + E T   V++ S+ + 
Sbjct: 63  IFSHPNVLPVLGACQSPPA------PHPTLITHWMPYGSLYNVLHEGT-NFVVDQSQAVK 115

Query: 595 VLIGVAKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG- 650
             + +A+ + FLHT   +IP       + + +++++E   A++S   +    +    +  
Sbjct: 116 FALDMARGMAFLHTLEPLIP----RHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYA 171

Query: 651 ----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN 700
                      K ED N         D++SF  +L E      +  R+  F   +L ++ 
Sbjct: 172 PAWVAPEALQKKPEDTNR---RSA--DMWSFAVLLWE------LVTREVPF--ADLSNME 218

Query: 701 -----SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
                + EG  R   P          +S ++     C+  +   RP F+ I+  L+
Sbjct: 219 IGMKVALEGL-RPTIP----PGISPHVSKLM---KICMNEDPAKRPKFDMIVPILE 266

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  110 bits (276), Expect = 2e-26
 Identities = 47/294 (15%), Positives = 109/294 (37%), Gaps = 46/294 (15%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG 551
           G+G +G++++G+   G  VA++   S ++ +    +  +     LRH +++  +      
Sbjct: 51  GKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFR-EAEIYQTVMLRHENILGFIAADNKD 108

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVI 611
            G       +++LV ++  +G+   +++  T    +     + + +  A  +  LH  ++
Sbjct: 109 NGTW----TQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIV 160

Query: 612 PGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTK--- 663
                  +     K+ NIL+ ++    ++D GL++  +           PN    TK   
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI--DIAPNHRVGTKRYM 218

Query: 664 ----LED-------------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
               L+D             D+++ G +  E     S+      +     D + S    +
Sbjct: 219 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE 278

Query: 707 RLVDPVVM---------ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            +   V              S E+L ++  I  +C  +   +R +   I   L 
Sbjct: 279 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 332

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  108 bits (271), Expect = 4e-26
 Identities = 44/294 (14%), Positives = 108/294 (36%), Gaps = 46/294 (15%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG 551
           G+G YG++++G    G +VA++   S  + +    +  L     LRH +++  +   +  
Sbjct: 17  GKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFR-ETELYNTVMLRHENILGFIASDMTS 74

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVI 611
                    +++L+  +   G+   ++   T    L+    L +++ +A  +  LH  + 
Sbjct: 75  RHSS----TQLWLITHYHEMGSLYDYLQLTT----LDTVSCLRIVLSIASGLAHLHIEIF 126

Query: 612 PGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN----SW--- 659
                  +     K+ NIL+ ++    ++D GL+++     +      +P      +   
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP 186

Query: 660 EMTKLED-------------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
           E+  L++             D+++FG +L E             +     D + +    +
Sbjct: 187 EV--LDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFE 244

Query: 707 RLVDPVVM---------ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            +   V +            S  +L+ +  +  +C      +R +   I   L 
Sbjct: 245 DMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLT 298

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  107 bits (269), Expect = 9e-26
 Identities = 57/287 (19%), Positives = 116/287 (40%), Gaps = 53/287 (18%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
              ++  ++G G++G + K +      VAI+ + S      +   + L  L+++ HP++V
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIV 64

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L G C+          N V LV E+   G+    +    P      +  ++  +  ++ 
Sbjct: 65  KLYGACL----------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG 114

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLS--IVSEDINSVGGKQEDPNSW 659
           V +LH+       +  +K  N+LL     + K+ D+G +  I +   N+ G       +W
Sbjct: 115 VAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKG-----SAAW 169

Query: 660 ---EMTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP 711
              E+ +  +     DVFS+G +L E      V  R+  F  +E+     +         
Sbjct: 170 MAPEVFEGSNYSEKCDVFSWGIILWE------VITRRKPF--DEIGGPAFR--------- 212

Query: 712 VVMATSSLESLSI-------VISIANKCICSESWSRPSFEDILWNLQ 751
           ++ A  +     +       + S+  +C   +   RPS E+I+  + 
Sbjct: 213 IMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMT 259

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 1e-25
 Identities = 57/320 (17%), Positives = 112/320 (35%), Gaps = 19/320 (5%)

Query: 17  SLFPLGTHQLQSSQTQVLLQLRKHLEYPKQLEI-------WINHGADFCYISSSTQVNIT 69
                  H +  +  +    L   ++    LE+         N  + F  I +  Q N  
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 70  CQDNFITELKIIGDKPSNVGNFDGFASA------NASLSENFSIDSFVTTLARLTSLRVL 123
             +  +  ++   +    +       +       N  L        F  +   L +L + 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 124 SLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIP 183
            +VS               ++   + + +          S +     L   +N   +T+ 
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 184 NWFDSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSL 239
                L  L  L ++ N+L           ++ +L  LD+S+N++S        S   SL
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 240 NVLNLSDNKLDSNLP-KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP 298
             LN+S N L   +   LP  + +  L +N     IPKQ  +L  LQ+L+++ N L+ +P
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 299 PPAIFSLPNISDLNLASNKF 318
                 L ++  + L +N +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 43/238 (18%), Positives = 71/238 (29%), Gaps = 16/238 (6%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
               L++S N++       I ++ KL+ LI+  N       + F     L +L + +NKL
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 203 AG-PFPSSIQRISTLSDLDLSKNAISGSLPD---LSSLGSLNVLNLSDNKLDS----NLP 254
                         L  LDLS NA   +LP      ++  L  L LS   L+      + 
Sbjct: 82  VKISC----HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 255 KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA 314
            L    V+  L       E P     L       +            I  +   +  NL 
Sbjct: 137 HLNISKVLLVLGETYGEKEDP---EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 315 SNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQN 372
            +     L  N       +   +  N     L       +    ++       + V  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 49/293 (16%), Positives = 102/293 (34%), Gaps = 23/293 (7%)

Query: 79  KIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI 138
           K      +++           +  E    +          SL ++   +      L   +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF--NTESLHIVFPTNKEFHFILDVSV 186

Query: 139 HRLYSLEYLDLSSN------FLFGSVPPKISTMVKLQTLILDDNFFN-NTIPNWFD--SL 189
             + +LE  ++           F S+  K+ T  KL  L L++     N+          
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 190 PSLTFLSMRNNKLAGP-----FPSSIQRISTLSDLDLSKNAISGSLPDL-SSLGSLNVLN 243
            ++ + S+ N KL G      F  S   +  LS   +  +        +     ++N+ N
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 244 LSDNKLDSNLPKLPRGLVMA---FLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPP 300
            + +         P  +        SNN  +  + +  G L +L+ L +  N L+ +   
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 301 A-IF-SLPNISDLNLASNKFSGSLPKNL-NCGGKLVFFDISNNKLTGGLPSCL 350
           A +   + ++  L+++ N  S    K   +    L+  ++S+N LT  +  CL
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 7e-12
 Identities = 53/265 (20%), Positives = 89/265 (33%), Gaps = 14/265 (5%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLI 172
           +  L+ LR+L +    I   L   +      LEYLDLS N L   +       V L+ L 
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 173 LDDNFFNN-TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
           L  N F+   I   F ++  L FL +    L       I  ++    + L      G   
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS-KVLLVLGETYGEKE 155

Query: 232 DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF 291
           D   L   N  +L      +        + +  ++N   S         + +  +     
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS-----NIKCVLEDNKCSYFL 210

Query: 292 NALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS 351
           + L  +      S   ++++    N F   L   L     + +F ISN KL G L     
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 352 NESDKRVVKFRGNCLSSNVQNQHPE 376
           + S   +     + + S+V      
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQS 293

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVS--LGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            S N   D+       LT L  L L    L     + +   ++ SL+ LD+S N +    
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 159 PPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPS-LTFLSMRNNKLAGPFPSSIQRISTL 216
                S    L +L +  N   +TI   F  LP  +  L + +NK+    P  + ++  L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
            +L+++ N +  S+PD     L SL  + L  N  D
Sbjct: 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP---KISTMVKLQTLI 172
            ++ L+ L L +  +  S    I  L   + L +          P   +      L  + 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 173 LDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS-----------TLSDLDL 221
             +  F+  +     ++ +L   +++           +  ++           TL++++ 
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 222 SKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP--------RGLVMAFLSNNSFSGE 273
           + N+    +  L    ++   ++S+ KL   L            + L +  + ++ F   
Sbjct: 233 TWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLV 333
               Y   + +   + + +  R +       +     L+ ++N  + ++ +N     +L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 334 FFDISNNKLT 343
              +  N+L 
Sbjct: 352 TLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 40/210 (19%), Positives = 59/210 (28%), Gaps = 56/210 (26%)

Query: 147 LDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPF 206
           +D S N L   VP  +S   K   L +  N+ +    +   SL  L  L           
Sbjct: 5   VDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRIL----------- 50

Query: 207 PSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF 264
                         +S N I   L          L  L+LS NKL   +           
Sbjct: 51  -------------IISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS---------- 85

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS-LPNISDLNLASNKFSGSLP 323
                              L+ LD+SFNA   +P    F  +  +  L L++     S  
Sbjct: 86  -------------CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 324 KNLNCGGKL-VFFDISNNKLTGGLPSCLSN 352
             +       V   +         P  L +
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 1e-25
 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 33/247 (13%)

Query: 100 SLSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFG 156
           +L EN    I +   T   L  L VL L    I   +     + L SL  L+L  N+L  
Sbjct: 81  NLMENNIQMIQA--DTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL-T 136

Query: 157 SVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM-RNNKLAGPFPSSIQRIS 214
            +P      + KL+ L L +N   +     F+ +PSL  L +    KL      + + + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 215 TLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI 274
            L  L+L    I   +P+L+ L  L  L +S N                 +   SF G  
Sbjct: 197 NLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPE-------------IRPGSFHG-- 240

Query: 275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLV 333
                 L+ L++L +  + +  +   A   L ++ +LNLA N  S SLP +L      LV
Sbjct: 241 ------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293

Query: 334 FFDISNN 340
              + +N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 237 GSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALR 295
              + +  +   L   +P+ +P       L  N+        +  L+ L+ L +  N++R
Sbjct: 54  NQFSKVVCTRRGLSE-VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 296 GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
            +   A   L +++ L L  N  +  +P        KL    + NN + 
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 1e-25
 Identities = 69/285 (24%), Positives = 114/285 (40%), Gaps = 54/285 (18%)

Query: 115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
                  VL++   G+  +LPD +     +  L +  N L  S+P       +L+TL + 
Sbjct: 37  CLNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNL-TSLPALPP---ELRTLEVS 89

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQR--------------ISTLSDLD 220
            N    ++P     L  L+  S     L    PS + +                 L +L 
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELS 147

Query: 221 LSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQ 280
           +S N ++ SLP L     L  L   +N+L ++LP LP GL    +S+N  +  +P    +
Sbjct: 148 VSDNQLA-SLPAL--PSELCKLWAYNNQL-TSLPMLPSGLQELSVSDNQLA-SLPTLPSE 202

Query: 281 L-------NQ----------LQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
           L       N+          L++L +S N L  +P         + +L ++ N+ + SLP
Sbjct: 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLT-SLP 257

Query: 324 KNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
                   L+   +  N+LT  LP  L + S +  V   GN LS 
Sbjct: 258 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 7e-20
 Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 21/207 (10%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
              L+ LS+    +  SLP        L  L   +N L  S+P   S    LQ L + DN
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQL-TSLPMLPS---GLQELSVSDN 191

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
               ++P        L  L   NN+L    P+     S L +L +S N ++ SLP     
Sbjct: 192 QLA-SLP---TLPSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPV--LP 240

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG 296
             L  L +S N+L S LP LP GL+   +  N  +  +P+    L+    +++  N L  
Sbjct: 241 SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 297 MPPPAIFSLPNISDLNLASNKFSGSLP 323
               A+  + +    +    +F  +  
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
            + L+ L +    +  SLP        L+ L +S N L  S+P   S    L +L +  N
Sbjct: 220 PSGLKELIVSGNRL-TSLPVLPS---ELKELMVSGNRL-TSLPMLPS---GLLSLSVYRN 271

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
                +P     L S T +++  N L+     +++ I++             +       
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQ 285
                L  +D  + +   +               +        +L++ +
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN 340
            N    L++  + L  + P  + +  +I+ L +  N  + SLP       +L   ++S N
Sbjct: 39  NNGNAVLNVGESGLTTL-PDCLPA--HITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 341 KLTGGLPSCLSNESDKRVVKFRGNCLSSNVQN 372
           +LT  LP       +  +       L +    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG 122

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (278), Expect = 2e-25
 Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 29/228 (12%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLV--SLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            + N   ++F  +   L SL  L L    L   G          SL+YLDLS N +  ++
Sbjct: 332 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 159 PPKISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLS 217
                 + +L+ L    +        + F SL +L +L + +      F      +S+L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 218 DLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP 275
            L ++ N+   +      + L +L  L+LS  +L+              LS  +F+    
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-------------LSPTAFNS--- 492

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
                L+ LQ L+M+ N L+ +P      L ++  + L +N +  S P
Sbjct: 493 -----LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 16/205 (7%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            +PD +    S + LDLS N L         +  +LQ L L            + SL  L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
           + L +  N +      +   +S+L  L   +  ++ SL +  +  L +L  LN++ N + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 251 S-----NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQ----QLDMSFNALRGMPPPA 301
           S         L   L    LS+N            L+Q+      LD+S N +  + P A
Sbjct: 138 SFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 302 IFSLPNISDLNLASNKFSGSLPKNL 326
            F    +  L L +N  S ++ K  
Sbjct: 197 -FKEIRLHKLTLRNNFDSLNVMKTC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 50/287 (17%), Positives = 93/287 (32%), Gaps = 46/287 (16%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDK-IHRLYSLEYLDLSSNFLFGS-- 157
           LS N  ++       +   L  L+L +     ++    I  L  LE   L          
Sbjct: 184 LSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 158 -VPPKISTMVKLQTLILDDN------FFNNTIPNWFDSLPSLTFLSMRNNKL----AGPF 206
                 S +  L  L +++       ++ + I + F+ L +++  S+ +  +       +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 207 PSSIQRI---------------STLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS 251
               Q +                +L  L  + N    +      L SL  L+LS N L  
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSF 361

Query: 252 ---------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
                        L + L    LS N     +   +  L QL+ LD   + L+ M   ++
Sbjct: 362 KGCCSQSDFGTTSL-KYL---DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 303 F-SLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS 348
           F SL N+  L+++      +     N    L    ++ N        
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 54/251 (21%), Positives = 89/251 (35%), Gaps = 20/251 (7%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
            +      L+VL L    I          L  L  L L+ N +  S+     S +  LQ 
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQK 104

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA-GPFPSSIQRISTLSDLDLSKNAIS-- 227
           L+  +    +        L +L  L++ +N +     P     ++ L  LDLS N I   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 228 --GSLPDLSSLGSLNV-LNLSDNKLDSNLPKLPRGLVMA--FLSNNSFSGEIPKQY-GQL 281
               L  L  +  LN+ L+LS N ++   P   + + +    L NN  S  + K     L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 282 NQLQQLD------MSFNALRGMPPPAIFSLPN--ISDLNLASNKFSGSLPKNL-NCGGKL 332
             L+          +   L      A+  L N  I +  LA   +      +L NC   +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 333 VFFDISNNKLT 343
             F + +  + 
Sbjct: 285 SSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.5 bits (230), Expect = 1e-19
 Identities = 53/243 (21%), Positives = 86/243 (35%), Gaps = 30/243 (12%)

Query: 104 NFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS 163
           ++ +D  +     LT++   SLVS+ I   + D     +  ++L+L +        P + 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNFGWQHLELVNCKFGQ--FPTLK 323

Query: 164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDL 221
            +  L+ L    N   N        LPSL FL +  N L+  G    S    ++L  LDL
Sbjct: 324 -LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 222 SKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQL 281
           S N +     +   L  L  L+   + L                  + F          L
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------------MSEFSVFLS--------L 420

Query: 282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKN-LNCGGKLVFFDISNN 340
             L  LD+S    R         L ++  L +A N F  +   +       L F D+S  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 341 KLT 343
           +L 
Sbjct: 481 QLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 4e-18
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 27/251 (10%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL-FGSVPPKISTMVKLQTL 171
             + L+SL+ L  V   +       I  L +L+ L+++ N +    +P   S +  L+ L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 172 ILDDNFFNNTIPNWFDSLPSLTF----LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS 227
            L  N   +        L  +      L +  N +    P + + I  L  L L  N  S
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS 213

Query: 228 GSLPD--LSSLGSLNVLNLSDNKLDS--NLPKLPRG----------LVMAFLSNNSFSGE 273
            ++    +  L  L V  L   +  +  NL K  +                   + +  +
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIF-SLPNISDLNLASNKFSGSLPKNLNCGGKL 332
           I   +  L  +    +    +  +   +      ++  +N    +F     K+L      
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR---- 329

Query: 333 VFFDISNNKLT 343
                ++NK  
Sbjct: 330 --LTFTSNKGG 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
           +    L +L  L +       +     + L SLE L ++ N    +  P I + +  L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L         P  F+SL SL  L+M +N+L         R+++L  + L  N    S 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 231 PDLSSL 236
           P +  L
Sbjct: 535 PRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 21/129 (16%), Positives = 36/129 (27%)

Query: 240 NVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP 299
                 +         LP       LS N         +    +LQ LD+S   ++ +  
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 300 PAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVV 359
            A  SL ++S L L  N          +    L         L       + +    + +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 360 KFRGNCLSS 368
               N + S
Sbjct: 130 NVAHNLIQS 138

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (276), Expect = 3e-25
 Identities = 53/307 (17%), Positives = 109/307 (35%), Gaps = 21/307 (6%)

Query: 41  LEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANAS 100
            E    ++     G+     S +  + +      ++E++      + +G+F      N S
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF------NPS 272

Query: 101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP 160
            S+  S    V T+    ++R L +    ++  L      L  ++ + + ++ +F     
Sbjct: 273 ESDVVSELGKVETV----TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 161 KISTMVKLQTLILDDNFFNNTI---PNWFDSLPSLTFLSMRNNKLA--GPFPSSIQRIST 215
               +  L+ L L +N              + PSL  L +  N L         +  +  
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 216 LSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP 275
           L+ LD+S+N              +  LNLS   +      +P+ L +  +SNN+      
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFS 447

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
                L +LQ+L +S N L+ +P       P +  + ++ N+         +    L   
Sbjct: 448 L---FLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 336 DISNNKL 342
            +  N  
Sbjct: 503 WLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 16/249 (6%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
           +    D  S     S+P  ++    +++L L  N           +  +L  L ++++++
Sbjct: 6   ASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDS-----NLPK 255
                 +   + +L  LDLS N +S SL       L SL  LNL  N   +       P 
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 256 LPRGLVMAFLSNNSFSGEIPKQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA 314
           L   L    + N     EI +     L  L +L++   +LR     ++ S+ +I  L L 
Sbjct: 122 LTN-LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 315 SNKFSGSLPKNLNCGGKLVFFDISNNKLTG---GLPSCLSNESDKRVVKFRGNCLSSNVQ 371
            ++ +  L    +    + + ++ +  L              S  + + FRG+ L+    
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 372 NQHPESYCF 380
           N+  +   +
Sbjct: 241 NELLKLLRY 249

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 37/261 (14%)

Query: 105 FSIDSFVTTLARLT-SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS 163
             +D   + + +L     VL+  S      L   I  L  +E+ D + N L    P +  
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 164 TM--------VKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
            +        V ++ L +   +    +   +  L  +  +++ N+K+     S  Q + +
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 216 LSDLDLSKNAIS----GSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
           L  LDLS+N +      +     +  SL  L LS N L S + K                
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTG----------EILL 384

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGK 331
                    L  L  LD+S N    MP  +      +  LNL+S      +   +     
Sbjct: 385 T--------LKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIR-VVKTCI--PQT 432

Query: 332 LVFFDISNNKLTGGLPSCLSN 352
           L   D+SNN L       L  
Sbjct: 433 LEVLDVSNNNLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 51/307 (16%), Positives = 99/307 (32%), Gaps = 53/307 (17%)

Query: 101 LSEN-FSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDK-IHRLYSLEYLDLSSNFLFGSV 158
           L  N +      +    LT+L+ L + ++  +  +       L SL  L++ +  L    
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
              + ++  +  L L  +     +  + D L S+ +L +R+  LA    S +      S 
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 219 L-----------DLSKNAISGSLPDLSSLGSLNVLNLSDNKLD----------SNLPKLP 257
           +           D S N +   L  +  L  +   + + N L           S L K+ 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 258 RG-LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
              +    +       ++   Y  L +++++ +  + +  +P      L ++  L+L+ N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 317 KFSGSLPKNLNCGG-----------------------------KLVFFDISNNKLTGGLP 347
                  KN  C G                              L   DIS N       
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 348 SCLSNES 354
           SC   E 
Sbjct: 405 SCQWPEK 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 37/249 (14%), Positives = 82/249 (32%), Gaps = 8/249 (3%)

Query: 100 SLSENFSIDSF-VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            +    +         A LTSL  L + +L +       +  +  + +L L  +     +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
                 +  ++ L L D        +        + +     + +     S   +  L  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRG-LVMAFLSNNSFSGEIPKQ 277
             L  + +     D  +L  L   N S++ + S L K+    +    +       ++   
Sbjct: 249 YILELSEV--EFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 278 YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVF--- 334
           Y  L +++++ +  + +  +P      L ++  L+L+ N       KN  C G       
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 335 FDISNNKLT 343
             +S N L 
Sbjct: 366 LVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 41/286 (14%), Positives = 90/286 (31%), Gaps = 33/286 (11%)

Query: 113 TLARLTSLRVLSLVSLGIWG-SLPDKIHRLYSLEYLDLSSNFLFGSVPPK-ISTMVKLQT 170
               L+SL+ L+L+        +      L +L+ L + +   F  +     + +  L  
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS--- 227
           L +      N       S+  +  L++  ++ A         +S++  L+L    ++   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 228 -GSLPDLSSLGSLNVLNLSDNKLDS----NLPKLPRGLV--------------MAFLSNN 268
              LP       +  L    + L       L KL R ++              +   + +
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 269 SFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS---GSLPKN 325
                      +   +++L +    L          L  +  + + ++K      S  ++
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 326 LNCGGKLVFFDISNNKLT---GGLPSCLSNESDKRVVKFRGNCLSS 368
           L     L F D+S N +        +C       + +    N L S
Sbjct: 333 LK---SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 50/284 (17%), Positives = 94/284 (33%), Gaps = 41/284 (14%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPK-ISTMVKLQT 170
             L    +L+VL L S  I     D  + L SLE+LDLS N L  S+       +  L+ 
Sbjct: 44  GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKY 102

Query: 171 LILDDNFFNN-TIPNWFDSLPSLTFLSM-RNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           L L  N +    + + F +L +L  L +      +         +++L++L++   ++  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR- 161

Query: 229 SLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
           +     L S+  ++ L L  ++              AFL               L+ ++ 
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSES-------------AFLLEIFADI--------LSSVRY 200

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFS-------GSLPKNLNCGGKLVFFDISN 339
           L++    L       +      S +   + + S         L K L    +L   +  +
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 340 NKLTG------GLPSCLSNESDKRVVKFRGNCLSSNVQNQHPES 377
             L G           +S       V  R   +          +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 23/158 (14%)

Query: 101 LSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
           LS+N   S+      L  L +L  L +        +PD       + +L+LSS  +   V
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI-RVV 425

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRIS 214
              I     L+ L +     NN + ++   LP L  L +  NKL                
Sbjct: 426 KTCIPQ--TLEVLDVS----NNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPV----- 474

Query: 215 TLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
            L  + +S+N +  S+PD     L SL  + L  N  D
Sbjct: 475 -LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 19/109 (17%), Positives = 35/109 (32%)

Query: 235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNAL 294
           S  +  V +       S    L   +    LS N  +            LQ L +  + +
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 295 RGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
             +   A +SL ++  L+L+ N  S            L + ++  N   
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (272), Expect = 4e-25
 Identities = 53/270 (19%), Positives = 91/270 (33%), Gaps = 52/270 (19%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLY-------------SLEYLDLSSNFLFGSVPP 160
              + S             + P                        L+L++  L  S+P 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE 88

Query: 161 KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD 220
                  L++L+   N     +P    SL SL   +     L+   P        L  L 
Sbjct: 89  LPP---HLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLG 137

Query: 221 LSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQ 280
           +S N +   LP+L +   L ++++ +N L   LP LP  L      NN    E+P +   
Sbjct: 138 VSNNQLE-KLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLE-ELP-ELQN 193

Query: 281 LNQLQQLDMSFNALRGMP------------------PPAIFSLPNISDLNLASNKFSGSL 322
           L  L  +    N+L+ +P                   P + +LP ++ +   +N    +L
Sbjct: 194 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TL 252

Query: 323 PKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
           P        L   ++ +N LT  LP    +
Sbjct: 253 PDLP---PSLEALNVRDNYLT-DLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 46/221 (20%), Positives = 78/221 (35%), Gaps = 30/221 (13%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            +P +   + S      + +    + PP      ++    L D                 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----------A 73

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDS 251
             L + N  L    P        L  L  S N+++  LP+   SL SL V N +      
Sbjct: 74  HELELNNLGL-SSLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA--- 125

Query: 252 NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDL 311
            L  LP  L    +SNN    ++P +    + L+ +D+  N+L+ +P       P++  +
Sbjct: 126 -LSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFI 178

Query: 312 NLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
              +N+    LP+  N    L      NN L   LP    +
Sbjct: 179 AAGNNQLE-ELPELQNL-PFLTAIYADNNSLK-KLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 29/236 (12%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
             SL  ++  +  +   LP+ +  L  L  +   +N L   +P        L++++  +N
Sbjct: 172 PPSLEFIAAGNNQL-EELPE-LQNLPFLTAIYADNNSL-KKLPDLPL---SLESIVAGNN 225

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
                      +LP LT +   NN L    P       +L  L++  N ++  LP+L   
Sbjct: 226 IL--EELPELQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLT-DLPEL--P 276

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG 296
            SL  L++S+N   S L +LP  L     S+N     +         L++L++S N L  
Sbjct: 277 QSLTFLDVSENIF-SGLSELPPNLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLIE 331

Query: 297 MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
           +P       P +  L  + N  +  +P+       L    +  N L    P    +
Sbjct: 332 LPA----LPPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPES 378

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.6 bits (241), Expect = 3e-21
 Identities = 62/283 (21%), Positives = 104/283 (36%), Gaps = 49/283 (17%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L  L  L  +   +  +   LPD      SLE +   +N L     P++  +  L T+  
Sbjct: 191 LQNLPFLTAIYADNNSL-KKLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYA 244

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           D+N    T+P+     PSL  L++R+N L    P   Q ++ L   +   + +S   P+L
Sbjct: 245 DNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNL 299

Query: 234 SSL--------------GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYG 279
             L               SL  LN+S+NKL   LP LP  L     S N  + E+P+   
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-EVPEL-- 355

Query: 280 QLNQLQQLDMSFNALRGMPPP-----------AIFSLP----NISDLNLASNKFSGSLPK 324
               L+QL + +N LR  P              +  +P    N+  L++ +N      P 
Sbjct: 356 -PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 325 NLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS 367
                  +    +++ ++                  F  +   
Sbjct: 414 IP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  105 bits (263), Expect = 5e-25
 Identities = 54/282 (19%), Positives = 114/282 (40%), Gaps = 52/282 (18%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCL--PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           G GS+G +YKG+  +G  VA++ L   +     ++  K  + +L K RH +++  +G+  
Sbjct: 33  GSGSFGTVYKGKW-HGD-VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST 90

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT- 608
                      ++ +V ++    +   H+  +         + + +    A+ + +LH  
Sbjct: 91  AP---------QLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAK 139

Query: 609 GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW---EMT 662
            +I     +R +K+NNI L+E    K+ D+GL+        +    +      W   E+ 
Sbjct: 140 SII-----HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194

Query: 663 KLED--------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS-----QEGRQRLV 709
           +++D        DV++FG +L E +         GQ     +++ +        G     
Sbjct: 195 RMQDSNPYSFQSDVYAFGIVLYELMT--------GQLPYSNINNRDQIIEMVGRGSLSPD 246

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
              V +         +  +  +C+  +   RPSF  IL  ++
Sbjct: 247 LSKVRSNCPKR----MKRLMAECLKKKRDERPSFPRILAEIE 284

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  107 bits (270), Expect = 7e-25
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
             +   L  +  L    LGI     D +  L +L  ++ S+N L  +    +  + KL  
Sbjct: 39  TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVD 94

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           +++++N   +  P    +L +LT L++ NN++       ++ ++ L+ L+LS N IS  +
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DI 149

Query: 231 PDLSSLGSLNVLNLSDNKLD-SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
             LS L SL  L+  +   D   L  L   L    +S+N  S        +L  L+ L  
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG 344
           + N +  + P  +  L N+ +L+L  N+        L     L   D++NN+++ 
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (259), Expect = 2e-23
 Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 21/234 (8%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L  LT L  + + +  I    P  +  L +L  L L +N +  +    +  +  L  L L
Sbjct: 86  LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLEL 141

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
             N  ++        L SL  LS  N          +  ++TL  LD+S N +S  +  L
Sbjct: 142 SSNTISDISA--LSGLTSLQQLSFGNQVT---DLKPLANLTTLERLDISSNKVS-DISVL 195

Query: 234 SSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF 291
           + L +L  L  ++N++   + L  L   L    L+ N            L  L  LD++ 
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 292 NALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDISNNKLTG 344
           N +  + P  +  L  +++L L +N+ S   P   L     L   +++ N+L  
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLT---ALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (250), Expect = 2e-22
 Identities = 60/276 (21%), Positives = 112/276 (40%), Gaps = 24/276 (8%)

Query: 109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKL 168
           S ++ LA+LT+L  L   +  I    P  +  L +L+ L L+ N L       ++++  L
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNL 245

Query: 169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
             L L +N  +N  P     L  LT L +  N+++    S +  ++ L++L+L++N +  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE- 300

Query: 229 SLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
            +  +S+L +L  L L  N +   S +  L + L   F  NN  S         L  +  
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL 346
           L    N +  + P  + +L  I+ L L    ++ +                    L    
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--A 413

Query: 347 PSCLSNESDKRVVKFRGNCLSSNVQNQHPE-SYCFE 381
           P+ +S+        +    ++ N+ +   E SY F 
Sbjct: 414 PATISDGG-----SYTEPDITWNLPSYTNEVSYTFS 444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 11/214 (5%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           L+ LT L  L L +  I  S    +  L +L  L+L+ N L       IS +  L  L L
Sbjct: 261 LSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 316

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
             N  ++  P    SL  L  L   NNK++    SS+  ++ ++ L    N IS  L  L
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS-DLTPL 371

Query: 234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI-PKQYGQLNQLQQLDMSFN 292
           ++L  +  L L+D    +        + +     N     I P          + D+++N
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

Query: 293 ALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL 326
                     ++      +   +  FSG++ + L
Sbjct: 432 LPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 18/205 (8%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
            L    ++ +     +    + + +    +L      +T+      L  +T L      +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGL 260
                  ++ ++ L+ ++ S N ++  +  L +L  L  + +++N++   + L  L   L
Sbjct: 59  KSI--DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIADITPLANLTN-L 114

Query: 261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG 320
               L NN  +   P     L  L +L++S N +      A+  L ++  L+   N+ + 
Sbjct: 115 TGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 169

Query: 321 SLP-KNLNCGGKLVFFDISNNKLTG 344
             P  NL     L   DIS+NK++ 
Sbjct: 170 LKPLANLT---TLERLDISSNKVSD 191

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (263), Expect = 8e-25
 Identities = 50/251 (19%), Positives = 99/251 (39%), Gaps = 32/251 (12%)

Query: 119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNF 177
            LRV+    LG+   +P  +        LDL +N +   +       +  L TLIL +N 
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLPP--DTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNK 87

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPS---------SIQRIST--------L 216
            +   P  F  L  L  L +  N+L         +          I ++          +
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 217 SDLDLSKNAI-SGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE 273
             ++L  N + S  + +     +  L+ + ++D  + +    LP  L    L  N  + +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT-K 206

Query: 274 IPKQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL 332
           +       LN L +L +SFN++  +   ++ + P++ +L+L +NK    +P  L     +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 333 VFFDISNNKLT 343
               + NN ++
Sbjct: 266 QVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 24/210 (11%)

Query: 113 TLARLTSLRVLSLVSLGI-WGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
               L  + V+ L +  +    + +     +  L Y+ ++   +  ++P        L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTE 196

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L LD N            L +L  L +  N ++     S+     L +L L+ N +   +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 231 PD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
           P  L+    + V+ L +N + +    +       F      +               + +
Sbjct: 256 PGGLADHKYIQVVYLHNNNISA----IGSN---DFCPPGYNTK--------KASYSGVSL 300

Query: 290 SFNALRGMP-PPAIFS-LPNISDLNLASNK 317
             N ++     P+ F  +   + + L + K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 1e-24
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 29/232 (12%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
           +   L  L +L L    I  ++     + L +L  L+L  N L  ++P      + KL+ 
Sbjct: 83  SFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKE 140

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSM-RNNKLAGPFPSSIQRISTLSDLDLSKNAISGS 229
           L L +N   +     F+ +PSL  L +    +L+     + + +S L  L+L+   +   
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199

Query: 230 LPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
           +P+L+ L  L+ L+LS N L +             +   SF G        L  LQ+L M
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSA-------------IRPGSFQG--------LMHLQKLWM 238

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNN 340
             + ++ +   A  +L ++ ++NLA N  +  LP +L      L    + +N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 32/217 (14%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
               +      L   VP  IST    + L L +N       N F  L  L  L +  N +
Sbjct: 44  QFSKVICVRKNL-REVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDS-------NL 253
                 +   ++ L+ L+L  N ++ ++P+     L  L  L L +N ++S        +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 254 PKLPRGLVMA------FLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN 307
           P L R L +       ++S  +F G        L+ L+ L+++   LR +  P +  L  
Sbjct: 160 PSL-RRLDLGELKRLSYISEGAFEG--------LSNLRYLNLAMCNLREI--PNLTPLIK 208

Query: 308 ISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
           + +L+L+ N  S ++      G   L    +  +++ 
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTL 171
               L++LR L+L    +   +P+ +  L  L+ LDLS N    ++ P     ++ LQ L
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKL 236

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI 226
            +  +       N FD+L SL  +++ +N L          +  L  + L  N  
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  102 bits (257), Expect = 3e-24
 Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 76/306 (24%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD-------LLA 534
           N  +    +G+G +G ++KGR +++ + VAI+ L          +  +         +++
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
            L HP++V L G             N   +V EF+  G+    +        + WS +L 
Sbjct: 79  NLNHPNIVKLYGLMH----------NPPRMVMEFVPCGDLYHRL--LDKAHPIKWSVKLR 126

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILL-----NEHRIAKLSDYGLS-IVS 643
           +++ +A  ++++         N  +     ++ NI L     N    AK++D+GLS    
Sbjct: 127 LMLDIALGIEYMQN------QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV 180

Query: 644 EDINSVGGKQEDPNSW---EMTKLED-------DVFSFGFMLLESVAG--------PSVA 685
             ++ + G       W   E    E+       D +SF  +L   + G            
Sbjct: 181 HSVSGLLG----NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKI 236

Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFED 745
                  +E L          R   P          L  VI     C   +   RP F  
Sbjct: 237 KFINMIREEGL----------RPTIP----EDCPPRLRNVI---ELCWSGDPKKRPHFSY 279

Query: 746 ILWNLQ 751
           I+  L 
Sbjct: 280 IVKELS 285

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (257), Expect = 3e-24
 Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 30/237 (12%)

Query: 113 TLARLTSLRVLSLVS--LGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
              +LT L  LSL S  L   G          SL+YLDLS N +  ++      + +L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEH 105

Query: 171 LILDDNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGS 229
           L    +        + F SL +L +L + +      F      +S+L  L ++ N+   +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 230 LPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQL 287
                 + L +L  L+LS  +L+              LS  +F+         L+ LQ L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQ-------------LSPTAFNS--------LSSLQVL 204

Query: 288 DMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL--NCGGKLVFFDISNNKL 342
           +MS N    +       L ++  L+ + N    +  K    +    L F +++ N  
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 29/232 (12%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL-FGSVPPKI-STMVKLQTLILDD 175
           +S   L L S  +         +L  L  L LSSN L F     +       L+ L L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 176 NFFNNTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGSLPD-- 232
           N    T+ + F  L  L  L  +++ L      S    +  L  LD+S         +  
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 233 LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFN 292
            + L SL VL ++ N    N               + F+         L  L  LD+S  
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFL------------PDIFTE--------LRNLTFLDLSQC 185

Query: 293 ALRGMPPPAIFSLPNISDLNLASNKFSGSLPKN-LNCGGKLVFFDISNNKLT 343
            L  + P A  SL ++  LN++ N F  SL      C   L   D S N + 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 26/204 (12%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
           S   +  +S  L  SVP  I +      L L+ N   +     FD L  LT LS+ +N L
Sbjct: 8   SGTEIRCNSKGL-TSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 203 A--GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGL 260
           +  G    S    ++L  LDLS N +     +   L  L  L+   + L           
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------ 118

Query: 261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG 320
                  + F          L  L  LD+S    R         L ++  L +A N F  
Sbjct: 119 ------FSVFLS--------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 321 SLPKNLNCG-GKLVFFDISNNKLT 343
           +   ++      L F D+S  +L 
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 4/118 (3%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
               L+SL VL +       +    I   L +L +LDLS   L   + P   +++  LQ 
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQV 203

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST-LSDLDLSKNAIS 227
           L +  N F +     +  L SL  L    N +       +Q   + L+ L+L++N  +
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (256), Expect = 4e-24
 Identities = 61/268 (22%), Positives = 95/268 (35%), Gaps = 49/268 (18%)

Query: 58  CYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANA-SLSENFSIDSFVTTLAR 116
           CY       +  C    +  +      P  +      A++    L  N        +   
Sbjct: 8   CYNEPKVTTS--CPQQGLQAV------PVGI-----PAASQRIFLHGNRISHVPAASFRA 54

Query: 117 LTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILD 174
             +L +L L S  +   +       L  LE LDLS N    SV P     + +L TL LD
Sbjct: 55  CRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLSDLDLSKNAISGSL 230
                   P  F  L +L +L +++N L       F    + +  L+ L L  N IS S+
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF----RDLGNLTHLFLHGNRIS-SV 168

Query: 231 PD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
           P+     L SL+ L L  N++               +  ++F          L +L  L 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAH-------------VHPHAFRD--------LGRLMTLY 207

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASN 316
           +  N L  +P  A+  L  +  L L  N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 9e-20
 Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 29/206 (14%)

Query: 143 SLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM-RNN 200
           + + + L  N +   VP         L  L L  N         F  L  L  L +  N 
Sbjct: 33  ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 201 KLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPR 258
           +L    P++   +  L  L L +  +   L       L +L  L L DN L +       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA------- 143

Query: 259 GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
                 L +++F          L  L  L +  N +  +P  A   L ++  L L  N+ 
Sbjct: 144 ------LPDDTFRD--------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 319 SGSLPKN-LNCGGKLVFFDISNNKLT 343
           +  +  +     G+L+   +  N L+
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 240 NVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP 298
              +     L + +P  +P      FL  N  S      +     L  L +  N L  + 
Sbjct: 14  VTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 299 PPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
             A   L  +  L+L+ N    S+      G G+L    +    L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (266), Expect = 4e-24
 Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 25/233 (10%)

Query: 115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
             +     L L  L +  SLPD +     +  L+++ N L  S+P   +    L+ L   
Sbjct: 56  CLINQFSELQLNRLNL-SSLPDNLPP--QITVLEITQNAL-ISLPELPA---SLEYLDAC 108

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLS 234
           DN  + T+P   +   SL  L + NN+L    P      + L  ++   N ++  LP+  
Sbjct: 109 DNRLS-TLP---ELPASLKHLDVDNNQLTM-LPELP---ALLEYINADNNQLT-MLPE-- 157

Query: 235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ----LDMS 290
              SL VL++ +N+L + LP+LP  L    +S N     +P    + +  ++        
Sbjct: 158 LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 291 FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
            N +  + P  I SL     + L  N  S  + ++L+       +       +
Sbjct: 216 ENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 21/168 (12%)

Query: 188 SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAI--SGSLPDLSSLGSLNVLNLS 245
           SL   +F     N ++G +              L       + SL     +   + L L+
Sbjct: 12  SLSQNSF----YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 246 DNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS 304
              L S LP  LP  + +  ++ N+    +P+       L+ LD   N L  +P      
Sbjct: 68  RLNLSS-LPDNLPPQITVLEITQNALI-SLPE---LPASLEYLDACDNRLSTLPE----L 118

Query: 305 LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
             ++  L++ +N+ +  LP+       L + +  NN+LT  LP   ++
Sbjct: 119 PASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPTS 161

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 39/235 (16%), Positives = 72/235 (30%), Gaps = 17/235 (7%)

Query: 115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
              TSL VLS+ +  +   LP+      SLE LD+S+N L  S+P         +   + 
Sbjct: 157 ELPTSLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLL-ESLPAVPVRNHHSEETEIF 211

Query: 175 DNFFNN---TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
                N    IP    SL     + + +N L+     S+ + +   D    +   S    
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSD 270

Query: 232 DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAF---LSNNSFSGEIPKQYGQLNQLQQLD 288
              +     + +        N       +  AF      N+FS     +       +   
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTS 329

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
                +          L   ++L   S   +    ++      L + ++    L 
Sbjct: 330 GFREQVAAWLE----KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 227 SGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
             +   LS     N ++ +     S   K  +   +   + N     + +    +NQ  +
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEK-QALPGENRNEAVSLLKE--CLINQFSE 63

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL 346
           L ++   L  + P  +   P I+ L +  N    SLP+       L + D  +N+L+  L
Sbjct: 64  LQLNRLNLSSL-PDNLP--PQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TL 115

Query: 347 PSCLSN 352
           P   ++
Sbjct: 116 PELPAS 121

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 26/229 (11%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDN 176
           T  R+L L    I     D+      LE L+L+ N +  +V P   + +  L+TL L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LS 234
                    F  L +LT L +  NK+        Q +  L  L++  N +   +     S
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNAL 294
            L SL  L L    L S             +   + S         L+ L  L +    +
Sbjct: 150 GLNSLEQLTLEKCNLTS-------------IPTEALSH--------LHGLIVLRLRHLNI 188

Query: 295 RGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
             +   +   L  +  L ++   +  ++  N   G  L    I++  LT
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 5e-22
 Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 28/239 (11%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPS 191
           ++P+ I        LDL  N +  ++     ++   L+ L L++N  +   P  F++L +
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKL 249
           L  L +R+N+L          +S L+ LD+S+N I   L D     L +L  L + DN L
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 250 DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNIS 309
                          +S+ +FSG        LN L+QL +    L  +P  A+  L  + 
Sbjct: 141 VY-------------ISHRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 310 DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
            L L     +     +     +L   +IS+      +        +   +      L++
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 26/210 (12%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTL 171
             + L SL  L+L    +     + +  L+ L  L L    +  ++       + +L+ L
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVL 205

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
            +    + +T+        +LT LS+ +  L      +++ +  L  L+LS N IS ++ 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIE 264

Query: 232 D--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
              L  L  L  + L   +L               +   +F G        LN L+ L++
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAV-------------VEPYAFRG--------LNYLRVLNV 303

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASNKFS 319
           S N L  +      S+ N+  L L SN  +
Sbjct: 304 SGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 237 GSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALR 295
                +     +  + +P+ +P    +  L  N        ++     L++L+++ N + 
Sbjct: 11  AQDRAVLCHRKRFVA-VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 296 GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
            + P A  +L N+  L L SN+    +P  +  G   L   DIS NK+ 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (256), Expect = 2e-23
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 21/236 (8%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
               +  L VL L    +  SLP  I H    L  L +S+N L   +          LQ 
Sbjct: 112 VFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQN 169

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L  N     +      +PSL   ++  N L     S++     + +LD S N+I+  +
Sbjct: 170 LQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 220

Query: 231 PDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSGEIPKQY-GQLNQLQQL 287
                   L +L L  N L     L   P  LV   LS N    +I      ++ +L++L
Sbjct: 221 RG-PVNVELTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNELE-KIMYHPFVKMQRLERL 277

Query: 288 DMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
            +S N L  +       +P +  L+L+ N     + +N     +L    + +N + 
Sbjct: 278 YISNNRLVALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 27/242 (11%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
           + L        + +           +   L + + +   ++ +   +P  +  +  +++ 
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVEL 73

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L+D          F    ++  L M  N +    P   Q +  L+ L L +N +S SL
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 231 PD--LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQL 281
           P     +   L  L++S+N L+            L + L    LS+N  +  +      +
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL-QNL---QLSSNRLT-HVDL--SLI 185

Query: 282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNK 341
             L   ++S+N L  +          + +L+ + N  +  +   +N   +L    + +N 
Sbjct: 186 PSLFHANVSYNLLSTLAI-----PIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNN 237

Query: 342 LT 343
           LT
Sbjct: 238 LT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 20/219 (9%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            +   +        + +           +  T+   + +   ++          DS   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
             L++ + ++      +     T+  L +  NAI   LP     ++  L VL L  N L 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL- 129

Query: 251 SNLP-----KLPRGLVMAFLSNNSFSGEIPKQYGQ-LNQLQQLDMSFNALRGMPPPAIFS 304
           S+LP       P+ L    +SNN+    I     Q    LQ L +S N L  +       
Sbjct: 130 SSLPRGIFHNTPK-LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL--- 184

Query: 305 LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           +P++   N++ N  S +L   +     +   D S+N + 
Sbjct: 185 IPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 19/199 (9%)

Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS 214
           +  +   +        + +D    +        +L +   ++ +N+ +     + +    
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 215 TLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFL 265
            +  L+L+   I   +     +   ++  L +  N +         N+P L   L    L
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL-TVL---VL 124

Query: 266 SNNSFSGEIPKQ-YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
             N  S  +P+  +    +L  L MS N L  +      +  ++ +L L+SN+ +     
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

Query: 325 NLNCGGKLVFFDISNNKLT 343
            +     L   ++S N L+
Sbjct: 184 LIP---SLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 6/160 (3%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
           +TLA   ++  L      I   +   +     L  L L  N L  +    +     L  +
Sbjct: 199 STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEV 253

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
            L  N     + + F  +  L  L + NN+L        Q I TL  LDLS N +     
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 312

Query: 232 DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
           +      L  L L  N + +        L    LS+N + 
Sbjct: 313 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 62/285 (21%), Positives = 114/285 (40%), Gaps = 56/285 (19%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKLRHPHLVCLLGH 547
           G G +GK+Y+     G  VA++            T+ N++    L A L+HP+++ L G 
Sbjct: 16  GIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
           C+            + LV EF   G     +S    GK +     +   + +A+ + +LH
Sbjct: 75  CLKE--------PNLCLVMEFARGGPLNRVLS----GKRIPPDILVNWAVQIARGMNYLH 122

Query: 608 TGVIPGFFNNRVKTNNILLNE--------HRIAKLSDYGLSIVSEDINSVGGKQEDPNSW 659
              I    +  +K++NIL+ +        ++I K++D+GL+        +        +W
Sbjct: 123 DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAA--GAYAW 180

Query: 660 ---EMTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN-----SQEGRQ 706
              E+ +        DV+S+G +L E      +   +  F    +D L      +     
Sbjct: 181 MAPEVIRASMFSKGSDVWSYGVLLWE------LLTGEVPF--RGIDGLAVAYGVAMNKL- 231

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            L  P    ++  E  + ++     C   +  SRPSF +IL  L 
Sbjct: 232 ALPIP----STCPEPFAKLM---EDCWNPDPHSRPSFTNILDQLT 269

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.3 bits (248), Expect = 9e-23
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 34/248 (13%)

Query: 100 SLSENF--SIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFG 156
            L  N    +         L  L  L LV+  I   + +K    L  L+ L +S N L  
Sbjct: 60  DLQNNDISELRK--DDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHL-V 115

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA-GPFPSSIQRIST 215
            +PP + +   L  L + DN         F  L ++  + M  N L    F         
Sbjct: 116 EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 216 LSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP 275
           L+ L +S+  ++  +P      +LN L+L  NK+ +             +          
Sbjct: 174 LNYLRISEAKLT-GIPK-DLPETLNELHLDHNKIQA-------------IELEDLLR--- 215

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
                 ++L +L +  N +R +   ++  LP + +L+L +NK S  +P  L     L   
Sbjct: 216 -----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 336 DISNNKLT 343
            +  N +T
Sbjct: 270 YLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 23/127 (18%)

Query: 113 TLARLTSLRVLSL-------VSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTM 165
            L R + L  L L       +  G    LP       +L  L L +N L   VP  +  +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLP-------TLRELHLDNNKL-SRVPAGLPDL 263

Query: 166 VKLQTLILDDNFFNNTIPNWFDSL------PSLTFLSMRNNKLAGPF--PSSIQRISTLS 217
             LQ + L  N       N F  +           +S+ NN +      P++ + ++   
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 218 DLDLSKN 224
            +     
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 238 SLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG 296
            L V+  SD  L + +PK +     +  L NN  S      +  L  L  L +  N +  
Sbjct: 34  HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 297 MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           +   A   L  +  L ++ N     +P NL     LV   I +N++ 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL-------FGSVPPKISTM 165
           +L+ L +LR L L +  +   +P  +  L  L+ + L +N +       F  V   +   
Sbjct: 236 SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK-R 293

Query: 166 VKLQTLILDDNFFNNTI--PNWFDSLPSLTFLSMRNNK 201
                + L +N        P  F  +     +   N K
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (254), Expect = 1e-22
 Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 19/235 (8%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
               +  L VL L    +  SLP  I H    L  L +S+N L   +          LQ 
Sbjct: 118 VFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQN 175

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L  N     +      +PSL   ++  N L     S++     + +LD S N+I+  +
Sbjct: 176 LQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 226

Query: 231 PDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
                   L +L L  N L     L   P  LV   LS N     +   + ++ +L++L 
Sbjct: 227 RG-PVNVELTILKLQHNNLTDTAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           +S N L  +       +P +  L+L+ N     + +N     +L    + +N + 
Sbjct: 285 ISNNRLVALNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.7 bits (230), Expect = 1e-19
 Identities = 41/242 (16%), Positives = 89/242 (36%), Gaps = 27/242 (11%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
           + L        + +           +   L + + +   ++ +   +P  +  +  +++ 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVEL 79

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L L+D          F    ++  L M  N +    P   Q +  L+ L L +N +S SL
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 138

Query: 231 PD--LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQL 281
           P     +   L  L++S+N L+            L + L    LS+N  +  +      +
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL-QNL---QLSSNRLT-HVDL--SLI 191

Query: 282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNK 341
             L   ++S+N L  +          + +L+ + N  +  +   +N   +L    + +N 
Sbjct: 192 PSLFHANVSYNLLSTLAI-----PIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNN 243

Query: 342 LT 343
           LT
Sbjct: 244 LT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 5e-17
 Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 20/219 (9%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            +   +        + +           +  T+   + +   ++          DS   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
             L++ + ++      +     T+  L +  NAI   LP     ++  L VL L  N L 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL- 135

Query: 251 SNLP-----KLPRGLVMAFLSNNSFSGEIPKQYGQ-LNQLQQLDMSFNALRGMPPPAIFS 304
           S+LP       P+ L    +SNN+    I     Q    LQ L +S N L  +       
Sbjct: 136 SSLPRGIFHNTPK-LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL--- 190

Query: 305 LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
           +P++   N++ N  S +L   +     +   D S+N + 
Sbjct: 191 IPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 6/160 (3%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTL 171
           +TLA   ++  L      I   +   +     L  L L  N L  +    +     L  +
Sbjct: 205 STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEV 259

Query: 172 ILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP 231
            L  N     + + F  +  L  L + NN+L        Q I TL  LDLS N +     
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 318

Query: 232 DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
           +      L  L L  N + +        L    LS+N + 
Sbjct: 319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 26/167 (15%)

Query: 180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLG 237
             I +          + +        F      ++    +    + +   LP   L S  
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 75

Query: 238 SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
            + +LNL+D +++              +   +F+          + +Q+L M FNA+R +
Sbjct: 76  QVELLNLNDLQIEE-------------IDTYAFAY--------AHTIQKLYMGFNAIRYL 114

Query: 298 PPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
           PP    ++P ++ L L  N  S SLP+ +     KL    +SNN L 
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 46/284 (16%), Positives = 102/284 (35%), Gaps = 51/284 (17%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCL--PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           G+G +G++Y GR  +G  VAIR +      +  ++  K  +    + RH ++V  +G C+
Sbjct: 42  GKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM 99

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
                       + ++          + + +     VL+ ++   +   + K + +LH  
Sbjct: 100 SPP--------HLAIITSLCKGRTLYSVVRD--AKIVLDVNKTRQIAQEIVKGMGYLHA- 148

Query: 610 VIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW------EM 661
              G  +  +K+ N+  +  ++  ++D+GL              K    N W      E+
Sbjct: 149 --KGILHKDLKSKNVFYDNGKV-VITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEI 205

Query: 662 TKLED--------------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR 707
            +                 DVF+ G +  E  A         ++  +   +         
Sbjct: 206 IRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA--------REWPFKTQPAEAIIWQMGT 257

Query: 708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            + P +      + +S ++     C   E   RP+F  ++  L+
Sbjct: 258 GMKPNLSQIGMGKEISDILL---FCWAFEQEERPTFTKLMDMLE 298

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.3 bits (242), Expect = 3e-22
 Identities = 62/268 (23%), Positives = 96/268 (35%), Gaps = 39/268 (14%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYS---LEYLDLSSNFLFG 156
              +  +     T + +  SL+ L++ +  I   +     R+     L+ L L +  + G
Sbjct: 50  KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 157 SVPPKIS--TMVKLQTLILDDNFFNNTIPNWFDSL-----PSLTFLSMRNNKLAGPFPSS 209
           + PP +   T   L  L L +  +  T   W   L     P L  LS+            
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 210 IQRISTLSDLDLSKNAISGSLPDLSS-----LGSLNVLNLSDNKLDSNLPKLPRGLVMAF 264
           ++    LS LDLS N   G    +S+       +L VL L +  +               
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--------------- 213

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLP-NISDLNLASNKFSGSLP 323
               + SG          QLQ LD+S N+LR          P  ++ LNL+       +P
Sbjct: 214 ---ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269

Query: 324 KNLNCGGKLVFFDISNNKLTGGLPSCLS 351
           K L    KL   D+S N+L    PS   
Sbjct: 270 KGL--PAKLSVLDLSYNRLD-RNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 51/234 (21%), Positives = 79/234 (33%), Gaps = 36/234 (15%)

Query: 98  NASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPD-KIHRLYSLEYLDLSSNFLFG 156
           N  ++          T   L  L + ++        L + +      L+ L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNW----FDSLPSLTFLSMRNNKLA---GPFPSS 209
               ++     L TL L DN                 P+L  L++RN  +    G   + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 210 IQRISTLSDLDLSKNAISGSLPDLSSLG--SLNVLNLSDNKLDSNLPKLPRGLVMAFLSN 267
                 L  LDLS N++  +    S      LN LNLS   L      +P+GL       
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ----VPKGL------- 272

Query: 268 NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
                          +L  LD+S+N L   P P    LP + +L+L  N F  S
Sbjct: 273 -------------PAKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLDS 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 45/247 (18%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
            L R  +L+ L L S GI  ++ +     L SLE+LDLS N+L  ++       +  L  
Sbjct: 71  DLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTF 128

Query: 171 LILDDN---------FFNNTI-----------------PNWFDSLPSLTFLSMRNNKLAG 204
           L L  N          F++                      F  L  L  L +  + L  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 205 PFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSN-LPKLPRGLV 261
             P S++ I  +S L L        L +  +    S+  L L D  LD+    +L  G  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 262 MAF----------LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDL 311
            +           +++ S   ++ K   Q++ L +L+ S N L+ +P      L ++  +
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 312 NLASNKF 318
            L +N +
Sbjct: 307 WLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 15/214 (7%)

Query: 148 DLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFP 207
             SS  L  S+P  ++    +++L L +N       +      +L  L + +N +     
Sbjct: 37  KGSSGSL-NSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 208 SSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLP-----KLPRGL 260
            S   + +L  LDLS N +S +L       L SL  LNL  N   +         L +  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 261 VMAFLSNNSFSGEIPKQ-YGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS 319
           ++   + ++F+ +I ++ +  L  L++L++  + L+   P ++ S+ N+S L L   +  
Sbjct: 153 ILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 320 GSLPKNL-NCGGKLVFFDISNNKLTGGLPSCLSN 352
             L +   +    +   ++ +  L     S LS 
Sbjct: 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 37/174 (21%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQ 169
           +  + LT L++L + ++  +  +  K    L  LE L++ ++ L  S  PK   ++  + 
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVS 201

Query: 170 TLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGP------------------------ 205
            LIL        +  + D   S+  L +R+  L                           
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 206 -------FPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
                      + +IS L +L+ S+N +  S+PD     L SL  + L  N  D
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 21/248 (8%)

Query: 99  ASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            S+++  +I+  +     L +   ++     +  +       L  +  L      +  ++
Sbjct: 1   GSITQPTAINV-IFPDPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGV-TTI 56

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
              +  +  L  L L DN   +  P    +L  +T L +  N L       I  + ++  
Sbjct: 57  EG-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKT 111

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPK 276
           LDL+   I+  +  L+ L +L VL L  N++   S L  L   L    + N   S   P 
Sbjct: 112 LDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISPLAGLTN-LQYLSIGNAQVSDLTP- 168

Query: 277 QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFF 335
               L++L  L    N +  + P  + SLPN+ +++L +N+ S   P  N +    L   
Sbjct: 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTS---NLFIV 222

Query: 336 DISNNKLT 343
            ++N  +T
Sbjct: 223 TLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 11/218 (5%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
           V+ +A L S++ L L S  I  +    +  L +L+ L L  N +  +    ++ +  LQ 
Sbjct: 100 VSAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQY 155

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           L + +   ++  P    +L  LT L   +NK++    S +  +  L ++ L  N IS  +
Sbjct: 156 LSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS-DV 210

Query: 231 PDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI-PKQYGQLNQLQQLDM 289
             L++  +L ++ L++  + +        LV+  +        I P            ++
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN 327
           ++N L        ++          +  FSG++ + L 
Sbjct: 271 TWN-LTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPLT 307

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 90.2 bits (224), Expect = 5e-20
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 28/201 (13%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF 177
               +L L    ++      +     L  L+L    L  +      T+  L TL L  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSS 235
              ++P    +LP+LT L +  N+L      +++ +  L +L L  N +  +LP   L+ 
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 236 LGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALR 295
              L  L+L++N L      LP GL          +G        L  L  L +  N+L 
Sbjct: 147 TPKLEKLSLANNNLTE----LPAGL---------LNG--------LENLDTLLLQENSLY 185

Query: 296 GMPPPAIFSLPNISDLNLASN 316
            +P    F    +    L  N
Sbjct: 186 TIPKGF-FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 33/227 (14%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDD 175
           + S   ++     +  +LP  + +      L LS N L  +          +L  L LD 
Sbjct: 9   VASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLL-YTFSLATLMPYTRLTQLNLDR 64

Query: 176 NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--L 233
                T      +LP L  L + +N+L    P   Q +  L+ LD+S N ++ SLP   L
Sbjct: 65  A--ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNA 293
             LG L  L L  N+L +    LP GL          +           +L++L ++ N 
Sbjct: 121 RGLGELQELYLKGNELKT----LPPGL---------LTP--------TPKLEKLSLANNN 159

Query: 294 LRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN 340
           L  +P   +  L N+  L L  N    ++PK       L F  +  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 46/202 (22%), Positives = 68/202 (33%), Gaps = 52/202 (25%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
           S   ++     L  ++PP +        L L +N               LT L++   +L
Sbjct: 11  SHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVM 262
                                      L    +L  L  L+LS N+L S LP L + L  
Sbjct: 68  T-------------------------KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLP- 100

Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL 322
                                L  LD+SFN L  +P  A+  L  + +L L  N+   +L
Sbjct: 101 --------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 323 PKNL-NCGGKLVFFDISNNKLT 343
           P  L     KL    ++NN LT
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 3/108 (2%)

Query: 236 LGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALR 295
           + S   +N     L +  P LP+   +  LS N              +L QL++    L 
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 296 GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
            +      +LP +  L+L+ N+   SLP        L   D+S N+LT
Sbjct: 69  KLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.6 bits (223), Expect = 7e-20
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 139 HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
                L+ LDLS   +  ++      ++  L TLIL  N   +     F  L SL  L  
Sbjct: 49  FSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 198 RNNKL----AGPFPSSIQRISTLSDLDLSKNAISGSLPD---LSSLGSLNVLNLSDNKLD 250
               L      P       + TL +L+++ N I  S       S+L +L  L+LS NK+ 
Sbjct: 108 VETNLASLENFPI----GHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 251 S-------NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIF 303
           S        L ++P   +   LS N  +  I     +  +L++L +  N L+ +P     
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 304 SLPNISDLNLASN 316
            L ++  + L +N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 30/205 (14%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQR 212
            +P  +      + L L  N   +     F S P L  L +   ++     G +    Q 
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QS 74

Query: 213 ISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMA 263
           +S LS L L+ N I  SL     S L SL  L   +  L S       +L  L + L   
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KEL--- 129

Query: 264 FLSNNSF-SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPN----ISDLNLASNKF 318
            +++N   S ++P+ +  L  L+ LD+S N ++ +    +  L         L+L+ N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 319 SGSLPKNLNCGGKLVFFDISNNKLT 343
           +  +        +L    +  N+L 
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLK 213

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 63/317 (19%), Positives = 123/317 (38%), Gaps = 11/317 (3%)

Query: 8   LLLLLCLSWSLFPLGTHQLQSSQTQV-LLQLRKHLEYPKQLEIWINHGADFCYISSSTQV 66
           +L L+    SLF +  +   ++   + L  ++ + E  ++L  +++       + + T  
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 67  NITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLV 126
           +I        +L      P  V   +     N +++E    + F  +   L SL +  + 
Sbjct: 258 HIETTWKCSVKL-FQFFWPRPVEYLN---IYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 127 SLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF 186
           +     S          +    LS +           +      L    N F +++    
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 187 DSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDLSKNAISGSLPDL--SSLGSLNVL 242
            +L  L  L ++ N L          + +S+L  LD+S N+++    D   +   S+ VL
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 243 NLSDNKLDSNL-PKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPA 301
           NLS N L  ++   LP  + +  L NN     IPK    L  LQ+L+++ N L+ +P   
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 302 IFSLPNISDLNLASNKF 318
              L ++  + L  N +
Sbjct: 493 FDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 21/238 (8%)

Query: 134 LPDKIHRLYSLEYLDLSSNFL----FGSVPPKISTMVKLQTLILDDNFFNNTIPNW---F 186
           +   ++ L  L+  ++  N        +   +++    L  + L               F
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 187 DSLPSLTFLSMRNNKLAGP-----FPSSIQRISTLSDLDLSKNAISGSLPDL-SSLGSLN 240
                + +L++ N  +        F  S   + +L    +       S   L S    +N
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 241 VLNLSDNKLDSNLPKLPRGLVMA---FLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
           +  LS +         P           + N F+  + +    L +LQ L +  N L+  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 298 PPPAIFSLPNISDLNLASNKFSG--SLPKNLNCGG--KLVFFDISNNKLTGGLPSCLS 351
              A     N+S L       +   S   +  C     ++  ++S+N LTG +  CL 
Sbjct: 393 FKVA-LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 21/248 (8%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKIHRLY-SLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
            LT L  L L +          +  L+ S   LDL S  +      +   +     L L 
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI-KGGETESLQIPNTTVLHLV 202

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAG-------PFPSSIQRISTLSDLDLSKNAIS 227
            +  +        S+ +L  L + N KL          F S + R  TL ++ L     +
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 228 --GSLPDLSSLGSLNV--LNLSDNKLDSNLPKLP--------RGLVMAFLSNNSFSGEIP 275
              S+          V  LN+ +  +   + +          + L++  + N  F     
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
             Y    ++    +S +    +      S  + + LN   N F+ S+ +  +   +L   
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 336 DISNNKLT 343
            +  N L 
Sbjct: 383 ILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 49/298 (16%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
            L+ LRVL L    I  SL   +      LEYLD+S N L  ++      M  L+ L L 
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISC--CPMASLRHLDLS 129

Query: 175 DNFFNN-TIPNWFDSLPSLTFLSMRNNKL-AGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
            N F+   +   F +L  LTFL +   K              +   LDL    I G   +
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 233 LSSLGSLNVLNLSDNKLD-----------------------------------SNLPKLP 257
              + +  VL+L  +                                      S L + P
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 258 RGLVMAFLSNNSFSGEIPK--QYGQLNQLQQLDMSFNALRGMPPPAIF-----SLPNISD 310
             L +      +      K  Q+     ++ L++    +        F     +L ++  
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 311 LNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS 368
            ++ +  F  S     +   ++    +S +        C  + S    + F  N  + 
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 56/214 (26%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
               +D S+  L   VP  +    + + L L  N  +         L  L  L + +N++
Sbjct: 32  LESMVDYSNRNLT-HVPKDLPP--RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGL 260
                                     SL          L  L++S N+L +    +    
Sbjct: 89  R-------------------------SLDFHVFLFNQDLEYLDVSHNRLQN----ISCC- 118

Query: 261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS-LPNISDLNLASNKF- 318
                               +  L+ LD+SFN    +P    F  L  ++ L L++ KF 
Sbjct: 119 -------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 319 SGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
              L    +     +  D+ +  + GG    L  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 101 LSENFSIDSFVTTLARLTSLRVLSL--VSLGIWGSLPDKIHRLYSLEYLDLSSNFL-FGS 157
            ++N   DS     + L  L+ L L    L  +  +      + SLE LD+S N L   +
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 158 VPPKISTMVKLQTLILDDNFFNNTIPNWFDSLP-SLTFLSMRNNKLAGPFPSSIQRISTL 216
                +    +  L L  N    ++   F  LP  +  L + NN++    P  +  +  L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQAL 475

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
            +L+++ N +  S+PD     L SL  + L DN  D
Sbjct: 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 81.9 bits (203), Expect = 8e-17
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 51/220 (23%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLA------K 535
            +  +   +G G++G+++ GRL  + T VA++    +         L+   L       +
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL-----PPDLKAKFLQEARILKQ 168

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
             HP++V L+G C             +++V E +  G+F T +     G  L     L +
Sbjct: 169 YSHPNIVRLIGVCTQK--------QPIYIVMELVQGGDFLTFLRTE--GARLRVKTLLQM 218

Query: 596 LIGVAKAVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSDYGLS--IVSED 645
           +   A  +++L +                 R    N L+ E  + K+SD+G+S       
Sbjct: 219 VGDAAAGMEYLES-------KCCIHRDLAAR----NCLVTEKNVLKISDFGMSREEADGV 267

Query: 646 INSVGGKQEDPNSW---EMTK-----LEDDVFSFGFMLLE 677
             + GG ++ P  W   E         E DV+SFG +L E
Sbjct: 268 YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWE 307

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 8e-17
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 16/222 (7%)

Query: 135 PDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLT 193
                RL  L++L +        +       +  L  L LD N F       F+ L +L 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 194 FLSMRNNKLAGPF--PSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKL 249
            L++    L G     +  + +++L  L L  N I    P     ++   +VL+L+ NK+
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 250 DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNIS 309
            S    +    ++ F   +           +L+ +   DM+   L        F   +I+
Sbjct: 167 KS----ICEEDLLNFQGKH-------FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 310 DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS 351
            L+L+ N F  S+ K                  +  + S   
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 39/236 (16%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYS---LEYLDLSSNFLFG 156
            ++E +          + TS+  L L   G   S+  +     +   ++ L LS+++  G
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 157 SVPPKIS------------TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG 204
           S     +                ++T  L  +     + + F     L  L++  N++  
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313

Query: 205 PFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVM 262
              ++   ++ L  L+LS+N +  S+      +L  L VL+LS N + +           
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA----------- 361

Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
             L + SF G        L  L++L +  N L+ +P      L ++  + L +N +
Sbjct: 362 --LGDQSFLG--------LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 26/182 (14%)

Query: 168 LQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSI-QRISTLSDLDLSKNAI 226
           +  + L  N         F  L  L FL +          ++  + +S+L  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 227 SGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQL 284
              L     + L +L VL L+   LD            A LS N F          L  L
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDG-----------AVLSGNFFKP--------LTSL 131

Query: 285 QQLDMSFNALRGMPPPAIF-SLPNISDLNLASNKFSGSLPKNLN--CGGKLVFFDISNNK 341
           + L +  N ++ + P + F ++     L+L  NK      ++L    G       +S+  
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 342 LT 343
           L 
Sbjct: 192 LQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 9e-14
 Identities = 49/256 (19%), Positives = 85/256 (33%), Gaps = 51/256 (19%)

Query: 116 RLTSLRVLSL-------VSLGIWGSLPDKIH---RLYSLEYLDLSSNFLFGSVPPKISTM 165
            +    VL L       +      +   K     RL S+   D++  +L           
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 166 VKLQTLILDDNFFNNTIPNWFDSLPSLT-----FLSMRNNKLAGPFPSSIQRI------- 213
             + TL L  N F  ++   F    + T      LS   N  +    ++ +         
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 214 ---STLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNN 268
              S +   DLSK+ I  +L     S    L  L L+ N+++              + +N
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINK-------------IDDN 317

Query: 269 SFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC 328
           +F G        L  L +L++S N L  +      +L  +  L+L+ N    +L      
Sbjct: 318 AFWG--------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 329 G-GKLVFFDISNNKLT 343
           G   L    +  N+L 
Sbjct: 369 GLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 118 TSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDD 175
           + ++   L    I  +L   +      LE L L+ N +   +       +  L  L L  
Sbjct: 275 SGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQ 332

Query: 176 NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--L 233
           NF  +     F++L  L  L +  N +      S   +  L +L L  N +  S+PD   
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIF 391

Query: 234 SSLGSLNVLNLSDNKLD 250
             L SL  + L  N  D
Sbjct: 392 DRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 25/134 (18%)

Query: 214 STLSDLDLSKNAISGSLP--DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
           + ++ +DLS N+I+  L     S L  L  L +        +             NN+F 
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIR------------NNTFR 76

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF-SGSLPKNL-NCG 329
           G        L+ L  L + +N    +   A   L N+  L L         L  N     
Sbjct: 77  G--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 330 GKLVFFDISNNKLT 343
             L    + +N + 
Sbjct: 129 TSLEMLVLRDNNIK 142

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 46/232 (19%)

Query: 474 TLEELKEATNNFDMSAI-----MGEGSYGKLYKGRL----ENGTSVAIRCL-PSSKKYTV 523
            ++ ++          +     +G G +G +Y G L          A++ L   +    V
Sbjct: 11  LVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV 70

Query: 524 RNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
                   ++    HP+++ LLG C+   G          +V  +M +G+ R  I   T 
Sbjct: 71  SQFLTEGIIMKDFSHPNVLSLLGICLRSEG-------SPLVVLPYMKHGDLRNFIRNETH 123

Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGL 639
                  + +   + VAK +++L +          V       N +L+E    K++D+GL
Sbjct: 124 N--PTVKDLIGFGLQVAKGMKYLAS-------KKFVHRDLAARNCMLDEKFTVKVADFGL 174

Query: 640 S--IVSEDINSVGGKQED--PNSWEMTKLE----------DDVFSFGFMLLE 677
           +  +  ++  SV  K     P  W    LE           DV+SFG +L E
Sbjct: 175 ARDMYDKEYYSVHNKTGAKLPVKW--MALESLQTQKFTTKSDVWSFGVLLWE 224

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 41/213 (19%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHL 541
               +   +G G +G +  G+ +    VA++ +         +   +    + KL HP L
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG--SMSEDEFFQEAQTMMKLSHPKL 65

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V   G C             +++V E++SNG    ++  +  GK L  S+ L +   V +
Sbjct: 66  VKFYGVCSKE--------YPIYIVTEYISNGCLLNYLRSH--GKGLEPSQLLEMCYDVCE 115

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSED---INSVGGKQE 654
            + FL +       +  +       N L++     K+SD+G++    D   ++SVG K  
Sbjct: 116 GMAFLES-------HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKF- 167

Query: 655 DPNSWEMTKLE----------DDVFSFGFMLLE 677
            P  W  +  E           DV++FG ++ E
Sbjct: 168 -PVKW--SAPEVFHYFKYSSKSDVWAFGILMWE 197

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 37/209 (17%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G+G +G +  G    G  VA++C+ +    T +       ++ +LRH +LV
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLV 249

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            LLG  ++  G        +++V E+M+ G+   ++       VL     L   + V +A
Sbjct: 250 QLLGVIVEEKG-------GLYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEA 301

Query: 603 VQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS 658
           +++L         NN V       N+L++E  +AK+SD+GL+          GK   P  
Sbjct: 302 MEYLEG-------NNFVHRDLAARNVLVSEDNVAKVSDFGLT-KEASSTQDTGKL--PVK 351

Query: 659 WEMTKLE----------DDVFSFGFMLLE 677
           W  T  E           DV+SFG +L E
Sbjct: 352 W--TAPEALREKKFSTKSDVWSFGILLWE 378

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 31/209 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
            +  M   +G G YG++Y+G  +    +VA++ L       V        ++ +++HP+L
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNL 278

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C              +++ EFM+ GN   ++ E    + ++    L +   ++ 
Sbjct: 279 VQLLGVCTREP--------PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISS 329

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDP 656
           A+++L          N +       N L+ E+ + K++D+GLS +++ D  +     + P
Sbjct: 330 AMEYLEK-------KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 382

Query: 657 NSW--------EMTKLEDDVFSFGFMLLE 677
             W            ++ DV++FG +L E
Sbjct: 383 IKWTAPESLAYNKFSIKSDVWAFGVLLWE 411

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 41/213 (19%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHL 541
           +       +G G +G ++ G   N   VAI+ +            +   +++ KL HP L
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKL 65

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V L G C++           + LV EFM +G    ++       +      L + + V +
Sbjct: 66  VQLYGVCLEQAP--------ICLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCE 115

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSED---INSVGGKQE 654
            + +L            +       N L+ E+++ K+SD+G++    D    +S G K  
Sbjct: 116 GMAYLEE-------ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF- 167

Query: 655 DPNSWEMTKLE----------DDVFSFGFMLLE 677
            P  W     E           DV+SFG ++ E
Sbjct: 168 -PVKW--ASPEVFSFSRYSSKSDVWSFGVLMWE 197

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 36/220 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG----TSVAIRCLP--SSKKYTVRNLKLRLDLLAKL 536
             F +  ++G+G +G + + +L+        VA++ L         +         + + 
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF 82

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---GKVLNWSERL 593
            HPH+  L+G  +    +    +    ++  FM +G+    +  +        L     +
Sbjct: 83  DHPHVAKLVGVSLRSRAKG--RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLV 140

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVSEDIN 647
             ++ +A  +++L +        N +       N +L E     ++D+GLS  I S D  
Sbjct: 141 RFMVDIACGMEYLSS-------RNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYY 193

Query: 648 SVGGKQEDPNSW---EMTKLED-------DVFSFGFMLLE 677
             G   + P  W   E   L D       DV++FG  + E
Sbjct: 194 RQGCASKLPVKWLALES--LADNLYTVHSDVWAFGVTMWE 231

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 45/224 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLA---- 534
           N   +  I+GEG +G + +G L         VA++ +    K    + +   + L+    
Sbjct: 34  NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTM----KLDNSSQREIEEFLSEAAC 89

Query: 535 --KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN---TPGKVLNW 589
                HP+++ LLG CI+   +    + K  ++  FM  G+  T++  +   T  K +  
Sbjct: 90  MKDFSHPNVIRLLGVCIEMSSQ---GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPL 146

Query: 590 SERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVS 643
              L  ++ +A  +++L          N +       N +L +     ++D+GLS  I S
Sbjct: 147 QTLLKFMVDIALGMEYLSN-------RNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYS 199

Query: 644 EDINSVGGKQEDPNSW---EMTKLED-------DVFSFGFMLLE 677
            D    G   + P  W   E   L D       DV++FG  + E
Sbjct: 200 GDYYRQGRIAKMPVKWIAIES--LADRVYTSKSDVWAFGVTMWE 241

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 35/180 (19%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G+G +G +  G    G  VA++C+ +    T +       ++ +LRH +LV
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLV 77

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            LLG  ++  G        +++V E+M+ G+   ++       VL     L   + V +A
Sbjct: 78  QLLGVIVEEKG-------GLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEA 129

Query: 603 VQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSDYGLSIVSEDI--NSVGGK 652
           +++L         NN        R    N+L++E  +AK+SD+GL   +++       GK
Sbjct: 130 MEYLEG-------NNFVHRDLAAR----NVLVSEDNVAKVSDFGL---TKEASSTQDTGK 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 13/166 (7%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLI 172
           T A++ SL  ++L ++ +   L   I   ++++ L +++     +    IS +  L+ L 
Sbjct: 39  TEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLR 94

Query: 173 LDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
           +      +        L SLT L + ++       + I  +  ++ +DLS N     +  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 233 LSSLGSLNVLNLSDNKLD-----SNLPKLPRGLVMAFLSNNSFSGE 273
           L +L  L  LN+  + +       + PKL   L   +  + +  G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRGIEDFPKL-NQL---YAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 30/185 (16%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 168 LQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLS---DLDLSKN 224
            +  +      ++T       + SLT++++ N  +     + +  I       DL ++  
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINV-----TDLTGIEYAHNIKDLTINNI 76

Query: 225 AISGSLPDLSSLGSLNVLNLSDNKLD----SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQ 280
             + +   +S L +L  L +    +      NL  L   L +  +S+++    I  +   
Sbjct: 77  HAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINT 134

Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDISN 339
           L ++  +D+S+N       P + +LP +  LN+  +        ++     KL      +
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFP---KLNQLYAFS 190

Query: 340 NKLTG 344
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
              ++ L++L  L ++   +       +  L SL  LD+S +    S+  KI+T+ K+ +
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           + L  N     I     +LP L  L+++ + +       I+    L+ L      I G
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 23/184 (12%), Positives = 66/184 (35%), Gaps = 30/184 (16%)

Query: 169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           +   L  +  N  IP+   +  +     +  +  A     +  ++++L+ + L+   ++ 
Sbjct: 4   EQTGLKASQDNVNIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT- 57

Query: 229 SLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
            L  +    ++  L +++    +N   +                        L+ L++L 
Sbjct: 58  DLTGIEYAHNIKDLTINNIHA-TNYNPI----------------------SGLSNLERLR 94

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS 348
           +    +     P +  L +++ L+++ +    S+   +N   K+   D+S N     +  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 349 CLSN 352
            L  
Sbjct: 154 PLKT 157

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 58/293 (19%), Positives = 112/293 (38%), Gaps = 57/293 (19%)

Query: 492 GEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           G+G++G +   R +      G  VA++ L  S +  +R+ +  +++L  L+H ++V   G
Sbjct: 50  GKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKG 109

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
            C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K +++L
Sbjct: 110 VCYSAGRRN------LKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICKGMEYL 161

Query: 607 HTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQEDPNSW 659
            T          +     T NIL+      K+ D+GL+      ++   V    E P  W
Sbjct: 162 GT-------KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFW 214

Query: 660 EMTKLED----------DVFSFG------FMLLESVAGPSVAARKGQFLQEELDSLNSQ- 702
                E           DV+SFG      F  +E    P     +     ++   +    
Sbjct: 215 --YAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHL 272

Query: 703 ----EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
               +   RL  P        E    +  I  +C  +    RPSF D+   + 
Sbjct: 273 IELLKNNGRLPRP---DGCPDE----IYMIMTECWNNNVNQRPSFRDLALRVD 318

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 19/184 (10%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           GEG +  +     L +G   A++ +   ++      +   D+     HP+++ L+ +C+ 
Sbjct: 38  GEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLR 97

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER--LAVLIGVAKAVQFLHT 608
             G    A ++ +L+  F   G     I           +E   L +L+G+ + ++ +H 
Sbjct: 98  ERG----AKHEAWLLLPFFKRGTLWNEIERLKDKGNF-LTEDQILWLLLGICRGLEAIHA 152

Query: 609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDV 668
               G+ +  +K  NILL +     L D G    +              S +   L+D  
Sbjct: 153 ---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA--------CIHVEGSRQALTLQDWA 201

Query: 669 FSFG 672
               
Sbjct: 202 AQRC 205

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 25/161 (15%)

Query: 490 IMGEGSYGKLYKGRLE-----NGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
            +GEG +GK+   R +      G  VA++ L P S    + +LK  +++L  L H ++V 
Sbjct: 28  DLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVK 87

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
             G C + GG        + L+ EF+ +G+ + ++ +N     +N  ++L   + + K +
Sbjct: 88  YKGICTEDGGNG------IKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGM 139

Query: 604 QFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS 640
            +L +          V       N+L+      K+ D+GL+
Sbjct: 140 DYLGS-------RQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)

Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           +   +G+G +G+++ G     T VAI+ L          L+    ++ KLRH  LV L  
Sbjct: 188 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ-EAQVMKKLRHEKLVQLYA 246

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
              +           +++V E+MS G+    +     GK L   + + +   +A  + ++
Sbjct: 247 VVSE---------EPIYIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYV 296

Query: 607 HTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSW-- 659
                     N V    +  NIL+ E+ + K++D+GL+ ++ ++  +     + P  W  
Sbjct: 297 ER-------MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 349

Query: 660 -EMTKLED-----DVFSFGFMLLE 677
            E           DV+SFG +L E
Sbjct: 350 PEAALYGRFTIKSDVWSFGILLTE 373

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 39/213 (18%)

Query: 487 MSAIMGEGSYGKLYKGRLE-----NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
               +G+G++G +   R +      G  VA++ L  S +  +R+ +  +++L  L+H ++
Sbjct: 14  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 73

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V   G C   G R+      + L+ E++  G+ R ++ ++   + ++  + L     + K
Sbjct: 74  VKYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKH--KERIDHIKLLQYTSQICK 125

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQE 654
            +++L T          +     T NIL+      K+ D+GL+      ++   V    E
Sbjct: 126 GMEYLGT-------KRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGE 178

Query: 655 DPNSWEMTKLED----------DVFSFGFMLLE 677
            P  W     E           DV+SFG +L E
Sbjct: 179 SPIFW--YAPESLTESKFSVASDVWSFGVVLYE 209

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 45/224 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLR-LDLLAK 535
               MS  +G+GS+G +Y+G  +        T VAI+ +  +     R   L    ++ +
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 84

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF-------RTHISENTPGKVLN 588
               H+V LLG    G            ++ E M+ G+        R  ++ N      +
Sbjct: 85  FNCHHVVRLLGVVSQGQ--------PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 136

Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IV 642
            S+ + +   +A  + +L+        N  V       N ++ E    K+ D+G++  I 
Sbjct: 137 LSKMIQMAGEIADGMAYLNA-------NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIY 189

Query: 643 SEDINSVGGKQEDPNSWEMTK--LED-------DVFSFGFMLLE 677
             D    GGK   P  W M+   L+D       DV+SFG +L E
Sbjct: 190 ETDYYRKGGKGLLPVRW-MSPESLKDGVFTTYSDVWSFGVVLWE 232

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 62/304 (20%), Positives = 104/304 (34%), Gaps = 70/304 (23%)

Query: 487 MSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
             + +G+G++G +   R        G  VA++ L  S     R+ +  + +L  L    +
Sbjct: 27  YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI 86

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPGKVLNWSERLAVLI 597
           V   G     G +       + LV E++ +G  R  +  +       ++L +S       
Sbjct: 87  VKYRGVSYGPGRQS------LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYS------S 134

Query: 598 GVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS---IVSEDINSVG 650
            + K +++L +          V       NIL+      K++D+GL+    + +D   V 
Sbjct: 135 QICKGMEYLGS-------RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVR 187

Query: 651 GKQEDPNSWEMTKLED----------DVFSFGFMLLE-------------SVAGPSVAAR 687
              + P  W     E           DV+SFG +L E                      R
Sbjct: 188 EPGQSPIFW--YAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCER 245

Query: 688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
               L   L+ L  +EG QRL  P        E    V  +   C       RPSF  + 
Sbjct: 246 DVPALSRLLELL--EEG-QRLPAP---PACPAE----VHELMKLCWAPSPQDRPSFSALG 295

Query: 748 WNLQ 751
             L 
Sbjct: 296 PQLD 299

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 78.8 bits (195), Expect = 6e-16
 Identities = 69/311 (22%), Positives = 122/311 (39%), Gaps = 81/311 (26%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENG-----TSVAIRCLPSSKKYTVRNLKLR 529
           L  LKE    F    ++G G++G +YKG            VAI+ L  +         L 
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 530 -LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPG 584
              ++A + +PH+  LLG C+          + V L+ + M  G    ++ E+       
Sbjct: 67  EAYVMASVDNPHVCRLLGICLT---------STVQLITQLMPFGCLLDYVREHKDNIGSQ 117

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSD 636
            +LNW       + +AK + +L                   R    N+L+   +  K++D
Sbjct: 118 YLLNWC------VQIAKGMNYLED-------RRLVHRDLAAR----NVLVKTPQHVKITD 160

Query: 637 YGLS--IVSEDI--NSVGGKQEDPNSWEMTKLE----------DDVFSFGFMLLESVAGP 682
           +GL+  + +E+   ++ GGK   P  W    LE           DV+S+G  + E +   
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKV--PIKW--MALESILHRIYTHQSDVWSYGVTVWELM--- 213

Query: 683 SVAAR--KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVI-SIANKCICSESWS 739
           +  ++   G    E    L  ++G +RL  P           +I +  I  KC   ++ S
Sbjct: 214 TFGSKPYDGIPASEISSIL--EKG-ERLPQP--------PICTIDVYMIMRKCWMIDADS 262

Query: 740 RPSFEDILWNL 750
           RP F +++   
Sbjct: 263 RPKFRELIIEF 273

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 34/166 (20%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQR 212
            +P  +   +    + L+ N      P  F     L  + + NN++       F    Q 
Sbjct: 25  EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF----QG 78

Query: 213 ISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSF 270
           + +L+ L L  N I+  LP      L SL +L L+ NK++     L            +F
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC----LRVD---------AF 124

Query: 271 SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                     L+ L  L +  N L+ +       L  I  ++LA N
Sbjct: 125 QD--------LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 133 SLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLP 190
            +P         L  +DLS+N +   + P     +  L +L+L  N       + F+ L 
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104

Query: 191 SLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNK 248
           SL  L +  NK+      + Q +  L+ L L  N +  ++     S L ++  ++L+ N 
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP 163

Query: 249 LD 250
             
Sbjct: 164 FI 165

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 36/207 (17%)

Query: 118 TSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDD 175
              + L L S  +  SLP K  HRL  L  L L+ N L  ++P  I   +  L+TL + D
Sbjct: 37  ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94

Query: 176 NFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLSDLDLSKNAISGSLP 231
           N         FD L +L  L +  N+L       F      ++ L+ L L  N +  SLP
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLP 149

Query: 232 D--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
                 L SL  L L +N+L      +P G          F          L +L+ L +
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKR----VPEGA---------FDK--------LTELKTLKL 188

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASN 316
             N L+ +P  A  SL  +  L L  N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)

Query: 148 DLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----A 203
           D SS  L  ++P  I      + L L  N  ++     F  L  L  L + +NKL    A
Sbjct: 22  DCSSKKL-TAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 204 GPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLV 261
           G F    + +  L  L ++ N +  +LP      L +L  L L  N+L S    LP  + 
Sbjct: 79  GIF----KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS----LPPRV- 128

Query: 262 MAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
                   F          L +L  L + +N L+ +P      L ++ +L L +N+    
Sbjct: 129 --------FDS--------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-R 171

Query: 322 LPKNLNCG-GKLVFFDISNNKLT 343
           +P+       +L    + NN+L 
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLIL 173
           +L +L  L L    +  SLP ++   L  L YL L  N L  S+P  +   +  L+ L L
Sbjct: 107 QLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRL 164

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
            +N         FD L  L  L + NN+L      +   +  L  L L +N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG 296
            + N ++ S  KL +    +P       L +N  S    K + +L +L+ L ++ N L+ 
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 297 MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCG-GKLVFFDISNNKLT 343
           +P      L N+  L +  NK   +LP  +      L    +  N+L 
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK 122

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 9e-16
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN 179
                  +  +  +      +L +L  LD  ++ +  +    I  +  L  LI   N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI- 76

Query: 180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSL 239
            T+        +LT+L+  +NKL       +  ++ L+ L+   N ++    D+S    L
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL--DVSQNPLL 129

Query: 240 NVLNLSDNKLDS-NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP 298
             LN + N L   ++    + L       N    ++        QL  LD SFN +  + 
Sbjct: 130 TYLNCARNTLTEIDVSHNTQ-LTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD 186

Query: 299 PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
              +     ++ LN  +N  +  L  N N   +L F D S+NKLT
Sbjct: 187 ---VSQNKLLNRLNCDTNNIT-KLDLNQN--IQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 22/231 (9%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLI 172
            +++   L  L+  +  I   L   +++   L +LD SSN L   +   ++ + +L    
Sbjct: 186 DVSQNKLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKL-TEID--VTPLTQLTYFD 239

Query: 173 LDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
              N     +     +L  LT L      L       +   + L             L D
Sbjct: 240 CSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL-D 292

Query: 233 LSSLGSLNVLNLSDNKLDS-NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF 291
           ++    L +L+     +   +L + P+ LV  +L+N   + E+        +L+ L    
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPK-LVYLYLNNTELT-ELD--VSHNTKLKSLSCVN 348

Query: 292 NALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKL 342
             ++      +  +P +++   A  +   ++PK       L    +S + L
Sbjct: 349 AHIQDFSS--VGKIPALNNNFEAEGQTI-TMPKETLTNNSLT-IAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 57/179 (31%)

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
               FN+  P+  D+  S    +            S ++++TL+ LD   ++I+  +  +
Sbjct: 7   QTQSFNDWFPD--DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGI 60

Query: 234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNA 293
             L  L  L  + N + + L           LS N+              L  L    N 
Sbjct: 61  EKLTGLTKLICTSNNI-TTLD----------LSQNT-------------NLTYLACDSN- 95

Query: 294 LRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
                         +++L++                 KL + +   NKLT    S    
Sbjct: 96  -------------KLTNLDVTPLT-------------KLTYLNCDTNKLTKLDVSQNPL 128

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 27/169 (15%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCID 550
           G G +G +  G+      VAI+ +         +  +    ++  L H  LV L G C  
Sbjct: 33  GTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV 610
                      +F++ E+M+NG    ++ E          + L +   V +A+++L +  
Sbjct: 91  Q--------RPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLES-- 138

Query: 611 IPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSED---INSVGGK 652
                   +       N L+N+  + K+SD+GLS    D    +SVG K
Sbjct: 139 -----KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK 182

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.6 bits (189), Expect = 9e-16
 Identities = 38/235 (16%), Positives = 77/235 (32%), Gaps = 54/235 (22%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILD 174
             S + L L+   +  ++P      L ++  + +S +     +       + K+  + + 
Sbjct: 30  PPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 175 DNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           +      I  +    LP L FL + N  L                            PDL
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-------------------------MFPDL 123

Query: 234 SSLGSLN---VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMS 290
           + + S +   +L ++DN   +++P             N+F        G  N+   L + 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIP------------VNAFQ-------GLCNETLTLKLY 164

Query: 291 FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL--NCGGKLVFFDISNNKLT 343
            N    +   A F+   +  + L  NK+   + K+            D+S   +T
Sbjct: 165 NNGFTSVQGYA-FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 26/176 (14%)

Query: 101 LSENFSIDSF-VTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSV 158
           +S + ++      +   L+ +  + + +      +       L  L++L + +  L    
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMF 120

Query: 159 PP--KISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTF-LSMRNNKLAGPFPSSIQ--- 211
           P   K+ +      L + DN +  +IP N F  L + T  L + NN       +S+Q   
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-----TSVQGYA 175

Query: 212 -RISTLSDLDLSKNAISGSLPD--LSSLGS-LNVLNLSDNKLDS-------NLPKL 256
              + L  + L+KN     +       + S  ++L++S   + +       +L +L
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 242 LNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQ-YGQLNQLQQLDMSFN-ALRGMPP 299
             ++   +   +P LP       L        IP   +  L  + ++ +S +  L+ +  
Sbjct: 16  FRVTCKDIQR-IPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 300 PAIFSLPNISDLNLASNKFSGSLP----KNLNCGGKLVFFDISNNKLT 343
            + ++L  ++ + + + +    +     K L     L F  I N  L 
Sbjct: 74  HSFYNLSKVTHIEIRNTRNLTYIDPDALKELP---LLKFLGIFNTGLK 118

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 18/192 (9%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
            ++F+  A++G+G++G++ K R   +    AI+ +  +++  +  +   + LLA L H +
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASLNHQY 63

Query: 541 LVCLLGHCIDGGGRDDYAVN-----KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
           +V      ++                +F+  E+  NG     I       +    +    
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHS---ENLNQQRDEYWR 120

Query: 596 LIG-VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGK 652
           L   + +A+ ++H+ G+I     +R +K  NI ++E R  K+ D+GL+        +   
Sbjct: 121 LFRQILEALSYIHSQGII-----HRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKL 175

Query: 653 QEDPNSWEMTKL 664
                      L
Sbjct: 176 DSQNLPGSSDNL 187

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 49/219 (22%)

Query: 492 GEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLL 545
           GEG++GK++     N         VA++ L  + +   ++ +   +LL  L+H H+V   
Sbjct: 50  GEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFF 109

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP------------GKVLNWSERL 593
           G C +G          + +V+E+M +G+    +  + P               L   + L
Sbjct: 110 GVCTEGR--------PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 161

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVSEDIN 647
           AV   VA  + +L          + V     T N L+ +  + K+ D+G+S  I S D  
Sbjct: 162 AVASQVAAGMVYLAG-------LHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYY 214

Query: 648 SVGGKQEDPNSWEMTK--LED-------DVFSFGFMLLE 677
            VGG+   P  W M    +         DV+SFG +L E
Sbjct: 215 RVGGRTMLPIRW-MPPESILYRKFTTESDVWSFGVVLWE 252

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 72/439 (16%), Positives = 136/439 (30%), Gaps = 90/439 (20%)

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVF- 334
           +Q+  LN+ + +   F  L  +                    F  +L  +     +L   
Sbjct: 199 RQFANLNREESILKFFEILSPV-------------YRFDKECFKCALGSSWIISVELAIG 245

Query: 335 --FDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQNQHPESYCFEVRTERNQAGSK 392
               IS     G  P+ L++ +  + +++                   +++     AG+ 
Sbjct: 246 PEEGISYLTDKGANPTHLADFNQVQTIQYS-------NSEDKDRKGMLQLKI----AGAP 294

Query: 393 NVGKLVGIIVGVLVIMVLLAFGFLVVCRRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTN 452
                + +    L I   +A      CR       S      K  +    +         
Sbjct: 295 EP---LTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRPQKEGERALPSIPKLANNEK 351

Query: 453 ARYVSEAAKLGSEGLPAC---RSFTLEELKEATNNFDMSAIM-----GEGSYGKLYKGRL 504
               S    +      A       T               I      GEG +G +++G  
Sbjct: 352 QGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIY 411

Query: 505 ENG----TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAV 559
            +      +VAI+   +    +VR   L+    + +  HPH+V L+G   +         
Sbjct: 412 MSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--------- 462

Query: 560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN-- 617
           N V+++ E  + G  R+ +        L+ +  +     ++ A+ +L +           
Sbjct: 463 NPVWIIMELCTLGELRSFLQVRKFS--LDLASLILYAYQLSTALAYLES-------KRFV 513

Query: 618 ------RVKTNNILLNEHRIAKLSDYGLSIVSEDIN---SVGGKQEDPNSWEMTKLE--- 665
                 R    N+L++ +   KL D+GLS   ED     +  GK   P  W     E   
Sbjct: 514 HRDIAAR----NVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKL--PIKW--MAPESIN 565

Query: 666 -------DDVFSFGFMLLE 677
                   DV+ FG  + E
Sbjct: 566 FRRFTSASDVWMFGVCMWE 584

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 26/171 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRH 538
            +F++   +G+G +G +Y  R  ++   +A++ L  +   K      L+  +++ + LRH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P+++ L G+  D          +V+L+ E+   G     + +    K     E+      
Sbjct: 69  PNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQKL--SKF---DEQRTATYI 115

Query: 599 --VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSED 645
             +A A+ + H+  VI     +R +K  N+LL      K++D+G S+ +  
Sbjct: 116 TELANALSYCHSKRVI-----HRDIKPENLLLGSAGELKIADFGWSVHAPS 161

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 24/176 (13%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNW-FDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
           +VP  + +      L L  N  +     W    L +L  L + +N L      +   +  
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 216 LSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDS-------NLPKLPRGLVMAFLS 266
           L  LDLS N +  +L +   S L +L VL L +N +         ++ +L + L   +LS
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL-QKL---YLS 144

Query: 267 NNSFSGEIPKQ----YGQLNQLQQLDMSFNALRGMPPPAIFSLPNIS--DLNLASN 316
            N  S   P +      +L +L  LD+S N L+ +P   +  LP      L L +N
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 112 TTLARLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQ 169
            T  RLT+L  L L    +   +  +    + +L YLDLSSN L  ++   + S +  L+
Sbjct: 58  WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALE 115

Query: 170 TLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLSDLDLSKNA 225
            L+L +N       N F+ +  L  L +  N++             ++  L  LDLS N 
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNK 174

Query: 226 IS----GSLPDLSSLGSLNVLNLSDNKLD 250
           +       L  L +    N L L +N L+
Sbjct: 175 LKKLPLTDLQKLPAW-VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 33/142 (23%)

Query: 206 FPSSIQRISTLSDLDLSKNAISGSLP---DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVM 262
            PS          LDLS N +S  L      + L +L+ L LS N L+     +      
Sbjct: 37  LPSYTAL------LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF----ISSE--- 82

Query: 263 AFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL 322
                 +F          +  L+ LD+S N L  +       L  +  L L +N     +
Sbjct: 83  ------AFVP--------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VV 127

Query: 323 PKNLNCG-GKLVFFDISNNKLT 343
            +N      +L    +S N+++
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQIS 149

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)

Query: 487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           +   +G+G +G+++ G     T VAI+ L          L+    ++ KLRH  LV L  
Sbjct: 271 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ-EAQVMKKLRHEKLVQLYA 329

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL 606
              +           +++V E+MS G+    +     GK L   + + +   +A  + ++
Sbjct: 330 VVSE---------EPIYIVTEYMSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYV 379

Query: 607 HTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSW-- 659
                     N V    +  NIL+ E+ + K++D+GL+ ++ ++  +     + P  W  
Sbjct: 380 ER-------MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 432

Query: 660 -EMTKLED-----DVFSFGFMLLE 677
            E           DV+SFG +L E
Sbjct: 433 PEAALYGRFTIKSDVWSFGILLTE 456

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 46/232 (19%)

Query: 474 TLEELKEATNNFDMSAI-----MGEGSYGKLYKGRL----ENGTSVAIRCL-PSSKKYTV 523
            ++ ++          +     +G G +G +Y G L          A++ L   +    V
Sbjct: 75  LVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV 134

Query: 524 RNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP 583
                   ++    HP+++ LLG C+   G          +V  +M +G+ R  I   T 
Sbjct: 135 SQFLTEGIIMKDFSHPNVLSLLGICLRSEG-------SPLVVLPYMKHGDLRNFIRNETH 187

Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGL 639
                  + +   + VAK ++FL +          V       N +L+E    K++D+GL
Sbjct: 188 N--PTVKDLIGFGLQVAKGMKFLAS-------KKFVHRDLAARNCMLDEKFTVKVADFGL 238

Query: 640 S--IVSEDINSVGGKQED--PNSWEMTKLED----------DVFSFGFMLLE 677
           +  +  ++ +SV  K     P  W    LE           DV+SFG +L E
Sbjct: 239 ARDMYDKEFDSVHNKTGAKLPVKW--MALESLQTQKFTTKSDVWSFGVLLWE 288

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLR 537
            N  +  ++G G +G++  GRL    +   SVAI+ L     +   R+      ++ +  
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HP+++ L G               V +V E+M NG+  + + ++         + + +L 
Sbjct: 105 HPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKH--DAQFTVIQLVGMLR 154

Query: 598 GVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSEDIN-----S 648
           G+A  +++L            V       NIL+N + + K+SD+GL  V ED       +
Sbjct: 155 GIASGMKYLSD-------MGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTT 207

Query: 649 VGGKQEDPNSWEMTKLE----------DDVFSFGFMLLE 677
            GGK   P  W  T  E           DV+S+G +L E
Sbjct: 208 RGGKI--PIRW--TSPEAIAYRKFTSASDVWSYGIVLWE 242

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 42/214 (19%)

Query: 487 MSAIMGEGSYGKLYKGRLEN-----GTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPH 540
               +GEG +GK+     +      G  VA++ L   +        K  +D+L  L H H
Sbjct: 35  KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH 94

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           ++   G C D G         + LV E++  G+ R ++  ++    +  ++ L     + 
Sbjct: 95  IIKYKGCCEDAGAAS------LQLVMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQIC 144

Query: 601 KAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS---IVSEDINSVGGKQ 653
           + + +LH         + +       N+LL+  R+ K+ D+GL+       +   V    
Sbjct: 145 EGMAYLHA-------QHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDG 197

Query: 654 EDPNSWEMTKLED----------DVFSFGFMLLE 677
           + P  W     E           DV+SFG  L E
Sbjct: 198 DSPVFW--YAPECLKEYKFYYASDVWSFGVTLYE 229

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 57/294 (19%), Positives = 111/294 (37%), Gaps = 64/294 (21%)

Query: 487 MSAIMGEGSYGKLYKGRL----ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHL 541
              ++G+G +G +Y G      +N    AI+ L   ++   V        L+  L HP++
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           + L+G  +   G          ++  +M +G+    I      +     + ++  + VA+
Sbjct: 85  LALIGIMLPPEGL-------PHVLLPYMCHGDLLQFIRSP--QRNPTVKDLISFGLQVAR 135

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQED 655
            +++L            V       N +L+E    K++D+GL+  I+  +  SV   +  
Sbjct: 136 GMEYLAE-------QKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHA 188

Query: 656 --PNSWEMTKLE----------DDVFSFGFMLLE--SVAG---PSVAARKGQFLQEELDS 698
             P  W  T LE           DV+SFG +L E  +        +         +    
Sbjct: 189 RLPVKW--TALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP------FDLTHF 240

Query: 699 LNSQEGRQRLVDPVVMATSSLESLSIVI-SIANKCICSESWSRPSFEDILWNLQ 751
           L   +GR RL  P        E     +  +  +C  ++   RP+F  ++  ++
Sbjct: 241 L--AQGR-RLPQP--------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVE 283

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 27/163 (16%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPN-WFDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
            +P  I        L L++N F        F  LP L  ++  NNK+      + +  S 
Sbjct: 25  KIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 216 LSDLDLSKNAISGSLP--DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE 273
           ++++ L+ N +  ++       L SL  L L  N++      +            SF G 
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITC----VGND---------SFIG- 127

Query: 274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                  L+ ++ L +  N +  + P A  +L ++S LNL +N
Sbjct: 128 -------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 139 HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
            +L  L  ++ S+N +   +          +  ++L  N   N     F  L SL  L +
Sbjct: 54  KKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
           R+N++      S   +S++  L L  N I+ ++      +L SL+ LNL  N  +
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 31/136 (22%)

Query: 214 STLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS 271
              ++L L+ N  +          L  L  +N S+NK+               +   +F 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-------------IEEGAFE 78

Query: 272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK----NLN 327
           G         + + ++ ++ N L  +       L ++  L L SN+ +  +       L+
Sbjct: 79  G--------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS 129

Query: 328 CGGKLVFFDISNNKLT 343
               +    + +N++T
Sbjct: 130 ---SVRLLSLYDNQIT 142

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 40/207 (19%)

Query: 140 RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN 199
                   +L    +  +     + +  +  +I +++   + +      LP++T L +  
Sbjct: 19  AFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNG 74

Query: 200 NKLAGPFPSSIQRISTLS---DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL 256
           NKL     + I+ ++ L     L L +N I   L  L  L  L  L+L  N + S++  L
Sbjct: 75  NKL-----TDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGI-SDINGL 127

Query: 257 PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                                   L QL+ L +  N +  +    +  L  +  L+L  N
Sbjct: 128 V----------------------HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDN 163

Query: 317 KFSGSLPKNLNCGGKLVFFDISNNKLT 343
           + S  +   L    KL    +S N ++
Sbjct: 164 QIS-DIV-PLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 15/209 (7%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           +  L ++  L L    +   +   +  L +L +L L  N +   +   +  + KL++L L
Sbjct: 61  IQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLSS-LKDLKKLKSLSL 116

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           + N  ++ I      LP L  L + NNK+     + + R++ L  L L  N IS  +  L
Sbjct: 117 EHNGISD-ING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVPL 171

Query: 234 SSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIP---KQYGQLNQLQQLD 288
           + L  L  L LS N +     L  L   L +  L +     +           N ++  D
Sbjct: 172 AGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNK 317
            S      +     +  PN+         
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 52/221 (23%)

Query: 492 GEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLL 545
           GEG++GK++     N         VA++ L        ++ +   +LL  L+H H+V   
Sbjct: 24  GEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFY 83

Query: 546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSER 592
           G C DG          + +V+E+M +G+    +  + P                L  S+ 
Sbjct: 84  GVCGDGD--------PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 135

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVSEDI 646
           L +   +A  + +L +        + V     T N L+  + + K+ D+G+S  + S D 
Sbjct: 136 LHIASQIASGMVYLAS-------QHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDY 188

Query: 647 NSVGGKQEDPNSWEM----------TKLEDDVFSFGFMLLE 677
             VGG    P  W M          T  E DV+SFG +L E
Sbjct: 189 YRVGGHTMLPIRW-MPPESIMYRKFT-TESDVWSFGVILWE 227

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 72/379 (18%), Positives = 134/379 (35%), Gaps = 72/379 (18%)

Query: 420 RRYCPRCTSEQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELK 479
             +     + ++L  +    +       + L+  R  +           A ++ ++ +LK
Sbjct: 8   HHHDYDIPTTENLYFQGAMGSELQSPEYK-LSKLRTSTIMTDYNPNYCFAGKTSSISDLK 66

Query: 480 E-ATNNFDMSAIMGEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLRLDL 532
           E    N  +   +G G++G++Y+G++           VA++ LP        + +  LD 
Sbjct: 67  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-----CSEQDELDF 121

Query: 533 L------AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENT 582
           L      +K  H ++V  +G  +             F++ E M+ G+     R      +
Sbjct: 122 LMEALIISKFNHQNIVRCIGVSLQSL--------PRFILLELMAGGDLKSFLRETRPRPS 173

Query: 583 PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLN---EHRIAKLS 635
               L   + L V   +A   Q+L         N+ +       N LL      R+AK+ 
Sbjct: 174 QPSSLAMLDLLHVARDIACGCQYLEE-------NHFIHRDIAARNCLLTCPGPGRVAKIG 226

Query: 636 DYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLESVAGPSV 684
           D+G++  I        GG    P  W M      +       D +SFG +L E     S+
Sbjct: 227 DFGMARDIYRAGYYRKGGCAMLPVKW-MPPEAFMEGIFTSKTDTWSFGVLLWEIF---SL 282

Query: 685 AAR--KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS 742
                  +  QE L+ +       R+  P             V  I  +C   +   RP+
Sbjct: 283 GYMPYPSKSNQEVLEFV---TSGGRMDPPK-------NCPGPVYRIMTQCWQHQPEDRPN 332

Query: 743 FEDILWNLQYAAQVQETAD 761
           F  IL  ++Y  Q  +  +
Sbjct: 333 FAIILERIEYCTQDPDVIN 351

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 37/212 (17%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG-TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
            +  M   +G G YG++Y+G  +    +VA++ L            L+   ++ +++HP+
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPN 70

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           LV LLG C              +++ EFM+ GN   ++ E    + ++    L +   ++
Sbjct: 71  LVQLLGVCTREP--------PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQIS 121

Query: 601 KAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQED 655
            A+++L          N +       N L+ E+ + K++D+GLS +++ D  +     + 
Sbjct: 122 SAMEYLEK-------KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 174

Query: 656 PNSWEMTKLE----------DDVFSFGFMLLE 677
           P  W  T  E           DV++FG +L E
Sbjct: 175 PIKW--TAPESLAYNKFSIKSDVWAFGVLLWE 204

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 49/210 (23%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHC 548
            +G G +G+++ G     T VA++ L         +  L   +L+ +L+H  LV L    
Sbjct: 20  RLGAGQFGEVWMGYYNGHTKVAVKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVV 77

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
                        ++++ E+M NG+    +     G  L  ++ L +   +A+ + F+  
Sbjct: 78  TQ---------EPIYIITEYMENGSLVDFLKTP-SGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 609 GVIPGFFNN--------RVKTNNILLNEHRIAKLSDYGLS-IVSEDI--NSVGGKQEDPN 657
                   N             NIL+++    K++D+GL+ ++ ++      G K   P 
Sbjct: 128 -------RNYIHRDLRAA----NILVSDTLSCKIADFGLARLIEDNEYTAREGAKF--PI 174

Query: 658 SWEMTKLE----------DDVFSFGFMLLE 677
            W  T  E           DV+SFG +L E
Sbjct: 175 KW--TAPEAINYGTFTIKSDVWSFGILLTE 202

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 37/172 (21%), Positives = 82/172 (47%), Gaps = 26/172 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRH 538
           ++FD+   +G+G +G +Y  R  +N   +A++ L  S   K+     L+  +++ + LRH
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P+++ +  +  D          +++L+ EF   G     + ++  G+     E+ +    
Sbjct: 74  PNILRMYNYFHDR--------KRIYLMLEFAPRGELYKELQKH--GRF---DEQRSATFM 120

Query: 599 --VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDI 646
             +A A+ + H   VI     +R +K  N+L+      K++D+G S+ +  +
Sbjct: 121 EELADALHYCHERKVI-----HRDIKPENLLMGYKGELKIADFGWSVHAPSL 167

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 58/321 (18%), Positives = 109/321 (33%), Gaps = 80/321 (24%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKKYTVRNLKLRLDL 532
            + E   +  +   +G+GS+G + +G          SVA++CL   K   +   +   D 
Sbjct: 14  LIGE--KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCL---KPDVLSQPEAMDDF 68

Query: 533 L------AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----T 582
           +        L H +L+ L G  +            + +V E    G+    + ++     
Sbjct: 69  IREVNAMHSLDHRNLIRLYGVVLT---------PPMKMVTELAPLGSLLDRLRKHQGHFL 119

Query: 583 PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYG 638
            G +  ++      + VA+ + +L +          +       N+LL    + K+ D+G
Sbjct: 120 LGTLSRYA------VQVAEGMGYLES-------KRFIHRDLAARNLLLATRDLVKIGDFG 166

Query: 639 LS--IVSED---INSVGGKQEDPNSWEMTKLE----------DDVFSFGFMLLESVAGPS 683
           L   +   D   +     K   P +W     E           D + FG  L E     +
Sbjct: 167 LMRALPQNDDHYVMQEHRKV--PFAW--CAPESLKTRTFSHASDTWMFGVTLWEMF---T 219

Query: 684 VAAR--KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVI-SIANKCICSESWSR 740
                  G    + L  +  +EG +RL  P        E     I ++  +C   +   R
Sbjct: 220 YGQEPWIGLNGSQILHKI-DKEG-ERLPRP--------EDCPQDIYNVMVQCWAHKPEDR 269

Query: 741 PSFEDILWNLQYAAQVQETAD 761
           P+F  +   L  A      A+
Sbjct: 270 PTFVALRDFLLEAQPTDMRAE 290

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 46/220 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGT-----SVAIRCL-PSSKKYTVRNLKLRLDLLAKL 536
           +      ++G G +G++YKG L+  +      VAI+ L     +    +      ++ + 
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 103

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
            H +++ L G               + ++ E+M NG     + E       +  + + +L
Sbjct: 104 SHHNIIRLEGVISKY--------KPMMIITEYMENGALDKFLREK--DGEFSVLQLVGML 153

Query: 597 IGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSEDIN----- 647
            G+A  +++L          N V       NIL+N + + K+SD+GLS V ED       
Sbjct: 154 RGIAAGMKYLAN-------MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYT 206

Query: 648 SVGGKQEDPNSWEMTKLE----------DDVFSFGFMLLE 677
           + GGK   P  W  T  E           DV+SFG ++ E
Sbjct: 207 TSGGKI--PIRW--TAPEAISYRKFTSASDVWSFGIVMWE 242

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 31/180 (17%)

Query: 487 MSAIMGEGSYGKLYKGRL----ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHL 541
           +  I+G G  G++  GRL    +    VAI+ L     +   R+      ++ +  HP++
Sbjct: 53  IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNI 112

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           + L G    G            +V E+M NG+  T +  +         + + +L GV  
Sbjct: 113 IRLEGVVTRG--------RLAMIVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGVGA 162

Query: 602 AVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGK 652
            +++L            V       N+L++ + + K+SD+GLS V ED       + GGK
Sbjct: 163 GMRYLSD-------LGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGK 215

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 39/203 (19%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG 551
           G G +G+++       T VA++ +      +V       +++  L+H  LV L       
Sbjct: 197 GAGQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVTK- 254

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVI 611
                     ++++ EFM+ G+    +  +  G      + +     +A+ + F+     
Sbjct: 255 --------EPIYIITEFMAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQ--- 302

Query: 612 PGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSED---INSVGGKQEDPNSWEMTKL 664
                N +    +  NIL++   + K++D+GL+ V ED       G K   P  W  T  
Sbjct: 303 ----RNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKF--PIKW--TAP 354

Query: 665 ED----------DVFSFGFMLLE 677
           E           DV+SFG +L+E
Sbjct: 355 EAINFGSFTIKSDVWSFGILLME 377

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 65/309 (21%), Positives = 110/309 (35%), Gaps = 70/309 (22%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLRLDLLA-- 534
            N  +   +G G++G++Y+G++           VA++ LP        + +  LD L   
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-----CSEQDELDFLMEA 84

Query: 535 ----KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNF----RTHISENTPGKV 586
               K  H ++V  +G  +             F++ E M+ G+     R      +    
Sbjct: 85  LIISKFNHQNIVRCIGVSLQSL--------PRFILMELMAGGDLKSFLRETRPRPSQPSS 136

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLN---EHRIAKLSDYGL 639
           L   + L V   +A   Q+L         N+ +       N LL      R+AK+ D+G+
Sbjct: 137 LAMLDLLHVARDIACGCQYLEE-------NHFIHRDIAARNCLLTCPGPGRVAKIGDFGM 189

Query: 640 S--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLESVAGPSVAAR- 687
           +  I        GG    P  W M      +       D +SFG +L E     S+    
Sbjct: 190 ARDIYRASYYRKGGCAMLPVKW-MPPEAFMEGIFTSKTDTWSFGVLLWEIF---SLGYMP 245

Query: 688 -KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDI 746
              +  QE L+ +       R+  P             V  I  +C   +   RP+F  I
Sbjct: 246 YPSKSNQEVLEFV---TSGGRMDPPK-------NCPGPVYRIMTQCWQHQPEDRPNFAII 295

Query: 747 LWNLQYAAQ 755
           L  ++Y  Q
Sbjct: 296 LERIEYCTQ 304

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 33/217 (15%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDN 176
            +   L  V   +             LE +++S N +   +   + S + KL  + ++  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 177 FFNNTI----PNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
              N +    P  F +LP+L +L + N  +                LD+  N    ++  
Sbjct: 90  ---NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 233 LSSLG---SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM 289
            S +G      +L L+ N +               + N++F+G            +    
Sbjct: 147 NSFVGLSFESVILWLNKNGIQE-------------IHNSAFNG--------TQLDELNLS 185

Query: 290 SFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL 326
             N L  +P            L+++  +   SLP   
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 33/164 (20%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLPDKIH-RLYSLEYLDLSSNFLFGSVPPKIST--MVKLQ 169
               L +L+ L + + GI   LPD           LD+  N    ++          +  
Sbjct: 99  AFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 170 TLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS-- 227
            L L+ N       + F+           NN L           S    LD+S+  I   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 228 --GSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNS 269
               L +L  L + +  NL        L  L      A L+  S
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTLEKLVALME----ASLTYPS 257

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 37/177 (20%)

Query: 492 GEGSYGKLYKGRLENG---TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGH 547
           G G++G + +G          VAI+ L    +       +R   ++ +L +P++V L+G 
Sbjct: 19  GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 78

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL- 606
           C             + LV E    G     +      + +  S    +L  V+  +++L 
Sbjct: 79  CQA---------EALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLE 127

Query: 607 -----HTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSED---INSVGGK 652
                H          R +   N+LL     AK+SD+GLS  + ++D        GK
Sbjct: 128 EKNFVH----------RDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGK 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 23/238 (9%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
           V     L +    +L    +  +       L  ++  +  ++ +       +     L+ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS--TLSDLDLSKNAISG 228
           L L  N  ++  P     L  L  LS+  N+L      ++  I    LS L L  N +  
Sbjct: 68  LHLSHNQISDLSP--LKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELR- 119

Query: 229 SLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQ 286
               L  L +L +L++ +NKL     L  L + L +  L  N  +        +L ++  
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSK-LEVLDLHGNEITNTGGLT--RLKKVNW 176

Query: 287 LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL-PKNLNCGGKLVFFDISNNKLT 343
           +D++       P   +   P +   N   +     + P  ++ GG  V   +      
Sbjct: 177 IDLTGQKCVNEP---VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPV 231

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
           + + +S I+G+G+   +++GR  + G   AI+   +       ++++R  ++L KL H +
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V L     +             L+ EF   G+  T + E +    L  SE L VL  V 
Sbjct: 69  IVKLF-AIEEETTTRHK-----VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVV 122

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILL----NEHRIAKLSDYGLS 640
             +  L          N +     K  NI+     +   + KL+D+G +
Sbjct: 123 GGMNHLR--------ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 51/221 (23%)

Query: 492 GEGSYGKLYKGRLENG------TSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           GE  +GK+YKG L          +VAI+ L   ++       +    L A+L+HP++VCL
Sbjct: 18  GEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCL 77

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSE 591
           LG               + +++ + S+G+    +   +P                L   +
Sbjct: 78  LGVVTKDQ--------PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPD 129

Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLS--IVSED 645
            + ++  +A  +++L +       ++ V     T N+L+ +    K+SD GL   + + D
Sbjct: 130 FVHLVAQIAAGMEYLSS-------HHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAAD 182

Query: 646 INSVGGKQEDPNSWEMTK--LED-------DVFSFGFMLLE 677
              + G    P  W M    +         D++S+G +L E
Sbjct: 183 YYKLLGNSLLPIRW-MAPEAIMYGKFSIDSDIWSYGVVLWE 222

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 64/235 (27%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLR 529
           L  LKE    F    ++G G++G +YKG       +    VAI+ L  +         L 
Sbjct: 9   LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD 66

Query: 530 -LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPG 584
              ++A + +PH+  LLG C+          + V L+ + M  G    ++ E+       
Sbjct: 67  EAYVMASVDNPHVCRLLGICLT---------STVQLITQLMPFGCLLDYVREHKDNIGSQ 117

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSD 636
            +LNW       + +AK + +L                   R    N+L+   +  K++D
Sbjct: 118 YLLNWC------VQIAKGMNYLED-------RRLVHRDLAAR----NVLVKTPQHVKITD 160

Query: 637 YGLS--IVSEDI--NSVGGKQEDPNSWEMTKLE----------DDVFSFGFMLLE 677
           +GL+  + +E+   ++ GGK   P  W    LE           DV+S+G  + E
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKV--PIKW--MALESILHRIYTHQSDVWSYGVTVWE 211

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 44/217 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG----TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLR 537
              ++   +GEG +G +++G   +      +VAI+   +    +VR   L+    + +  
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 74

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +        L+ +  +    
Sbjct: 75  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFLQVRKYS--LDLASLILYAY 123

Query: 598 GVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKLSDYGLSIVSEDIN---SVG 650
            ++ A+ +L +          V       N+L++ +   KL D+GLS   ED     +  
Sbjct: 124 QLSTALAYLES-------KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASK 176

Query: 651 GKQEDPNSWEMTKLE----------DDVFSFGFMLLE 677
           GK   P  W     E           DV+ FG  + E
Sbjct: 177 GKL--PIKW--MAPESINFRRFTSASDVWMFGVCMWE 209

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 29/169 (17%), Positives = 70/169 (41%), Gaps = 19/169 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP-SSKKYTVRNLKLRLDLLAKLRHPH 540
            +F+    +G G +G +++ +   +  + AI+ +   +++     +   +  LAKL HP 
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 541 LVCLLGHCIDGGGRDDYAVNK----VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
           +V      ++    +    +     +++  +     N +  ++     +    S  L + 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124

Query: 597 IGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           + +A+AV+FLH        +  +     K +NI      + K+ D+GL 
Sbjct: 125 LQIAEAVEFLH--------SKGLMHRDLKPSNIFFTMDDVVKVGDFGLV 165

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 68/235 (28%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLRLD 531
             KE         ++G G +G ++KG            V I+ +        ++ +   D
Sbjct: 9   IFKE--TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK--SGRQSFQAVTD 64

Query: 532 ---LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPG 584
               +  L H H+V LLG C           + + LV +++  G+   H+ ++     P 
Sbjct: 65  HMLAIGSLDHAHIVRLLGLCPG---------SSLQLVTQYLPLGSLLDHVRQHRGALGPQ 115

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSD 636
            +LNW       + +AK + +L         +         R    N+LL      +++D
Sbjct: 116 LLLNWG------VQIAKGMYYLEE-------HGMVHRNLAAR----NVLLKSPSQVQVAD 158

Query: 637 YGLS--IVSEDI--NSVGGKQEDPNSWEMTKLED----------DVFSFGFMLLE 677
           +G++  +  +D        K   P  W    LE           DV+S+G  + E
Sbjct: 159 FGVADLLPPDDKQLLYSEAKT--PIKW--MALESIHFGKYTHQSDVWSYGVTVWE 209

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 66/330 (20%), Positives = 121/330 (36%), Gaps = 80/330 (24%)

Query: 474 TLEELKEATNNFDMSAIM------GEGSYGKLYKGRLENG---TSVAIRCL-PSSKKYTV 523
            LEE++      D   +       G G++G + KG  +      +VA++ L   +    +
Sbjct: 2   ALEEIRPKEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPAL 61

Query: 524 RNLKLR-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT 582
           ++  L   +++ +L +P++V ++G C               LV E    G    ++ +N 
Sbjct: 62  KDELLAEANVMQQLDNPYIVRMIGICEA---------ESWMLVMEMAELGPLNKYLQQN- 111

Query: 583 PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKL 634
             + +     + ++  V+  +++L         +N        R    N+LL     AK+
Sbjct: 112 --RHVKDKNIIELVHQVSMGMKYLEE-------SNFVHRDLAAR----NVLLVTQHYAKI 158

Query: 635 SDYGLS-IVSEDIN----SVGGKQEDPNSWEMTKLE----------DDVFSFGFMLLESV 679
           SD+GLS  +  D N       GK   P  W     E           DV+SFG ++ E+ 
Sbjct: 159 SDFGLSKALRADENYYKAQTHGKW--PVKW--YAPECINYYKFSSKSDVWSFGVLMWEAF 214

Query: 680 AGPSVAAR--KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVI-SIANKCICSE 736
              S   +  +G    E    L   E  +R+  P              +  + N C   +
Sbjct: 215 ---SYGQKPYRGMKGSEVTAML---EKGERMGCP--------AGCPREMYDLMNLCWTYD 260

Query: 737 SWSRPSFEDILWNLQ--YAAQVQETADNEQ 764
             +RP F  +   L+  Y   V E   +  
Sbjct: 261 VENRPGFAAVELRLRNYYYDVVNEGHHHHH 290

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
            +F    ++G G +G+++K +   +G +  I+ +  + +   R +K     LAKL H ++
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKA----LAKLDHVNI 66

Query: 542 VCLLGHCIDGGGRDDYAV--------NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           V   G         + +           +F+  EF   G     I +   G+ L+    L
Sbjct: 67  VHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLAL 125

Query: 594 AVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            +   + K V ++H+  +I     NR +K +NI L + +  K+ D+GL 
Sbjct: 126 ELFEQITKGVDYIHSKKLI-----NRDLKPSNIFLVDTKQVKIGDFGLV 169

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 73.0 bits (179), Expect = 8e-14
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
           + + +S I+G+G+   +++GR  + G   AI+   +       ++++R  ++L KL H +
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V L     +             L+ EF   G+  T + E +    L  SE L VL  V 
Sbjct: 69  IVKLF-AIEEETTTRHK-----VLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVV 122

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILL----NEHRIAKLSDYGLS 640
             +  L          N +     K  NI+     +   + KL+D+G +
Sbjct: 123 GGMNHLR--------ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 28/171 (16%), Positives = 67/171 (39%), Gaps = 35/171 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNLKLRLDLLAKLRHP 539
             +     +GEGS+GK    +  E+G    I+   +           +  + +LA ++HP
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG-----KVLNWSERLA 594
           ++V       +           +++V ++   G+    I+          ++L+W     
Sbjct: 84  NIVQYRESFEEN--------GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDW----- 130

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
             + +  A++ +H        + ++     K+ NI L +    +L D+G++
Sbjct: 131 -FVQICLALKHVH--------DRKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 51/212 (24%)

Query: 492 GEGSYGKLYKGRLENG---TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGH 547
           G G++G + +G          VAI+ L    +       +R   ++ +L +P++V L+G 
Sbjct: 345 GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV 404

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL- 606
           C             + LV E    G     +      + +  S    +L  V+  +++L 
Sbjct: 405 CQA---------EALMLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLE 453

Query: 607 -----HTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS--IVSED---INSVGGKQED 655
                H          R +   N+LL     AK+SD+GLS  + ++D        GK   
Sbjct: 454 EKNFVH----------RNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKW-- 501

Query: 656 PNSWEMTKLE----------DDVFSFGFMLLE 677
           P  W     E           DV+S+G  + E
Sbjct: 502 PLKW--YAPECINFRKFSSRSDVWSYGVTMWE 531

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 56/232 (24%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAK 535
           NN      +G G++GK+ +         +    VA++ L  ++       L   L +++ 
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSH 105

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT-----------HISENTP 583
           L +H ++V LLG C  GG         V ++ E+   G+                +    
Sbjct: 106 LGQHENIVNLLGACTHGG--------PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIA 157

Query: 584 GKVLNWSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIAKLSD 636
               +  + L     VA+ + FL      H          R V   N+LL    +AK+ D
Sbjct: 158 NSTASTRDLLHFSSQVAQGMAFLASKNCIH----------RDVAARNVLLTNGHVAKIGD 207

Query: 637 YGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
           +GL+  I+++    V G    P  W M    + D       DV+S+G +L E
Sbjct: 208 FGLARDIMNDSNYIVKGNARLPVKW-MAPESIFDCVYTVQSDVWSYGILLWE 258

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
           +  L ++  L L    +   +   +  L +L +L L  N +   +   +  + KL++L L
Sbjct: 64  IQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSL 119

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           + N  ++ I      LP L  L + NNK+     + + R++ L  L L  N IS  +  L
Sbjct: 120 EHNGISD-ING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVPL 174

Query: 234 SSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNN---SFSGEIPKQYGQLNQLQQLD 288
           + L  L  L LS N +     L  L   L +  L +    +            N ++  D
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKN-LDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 289 MSFNALRGMPPPAIFSLPNIS-DLNLASNKFSGSLPKNLNCGGKLVFF 335
            S      +     +  PN+   L   +N+ S    + +  G     F
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 14/169 (8%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVR-NLKLRLDLLAKL 536
            +    ++M   +G G +G + +    + G  VAI+          R    L + ++ KL
Sbjct: 10  TQTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL 69

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
            HP++V       DG  +     +   L  E+   G+ R ++++      L       +L
Sbjct: 70  NHPNVVSAR-EVPDGL-QKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLL 127

Query: 597 IGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLS 640
             ++ A+++LH   +I      R +K  NI+L    +  I K+ D G +
Sbjct: 128 SDISSALRYLHENRIIH-----RDLKPENIVLQPGPQRLIHKIIDLGYA 171

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 43/174 (24%)

Query: 492 GEGSYGKLYKGRLENG---TSVAIRCL-PSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLG 546
           GEG++G++ K R++        AI+ +   + K   R+    L++L KL  HP+++ LLG
Sbjct: 34  GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG 93

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRT-------------HISENTPGKVLNWSERL 593
            C   G         ++L  E+  +GN                    N+    L+  + L
Sbjct: 94  ACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 145

Query: 594 AVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
                VA+ + +L      H          R +   NIL+ E+ +AK++D+GLS
Sbjct: 146 HFAADVARGMDYLSQKQFIH----------RDLAARNILVGENYVAKIADFGLS 189

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 59/284 (20%), Positives = 98/284 (34%), Gaps = 65/284 (22%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           G GS+  +YKG   E    VA          K   +  K   ++L  L+HP++V      
Sbjct: 35  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 94

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH- 607
                        + LV E M++G  +T++      KV+      +    + K +QFLH 
Sbjct: 95  ESTVKGKKC----IVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT 147

Query: 608 --TGVIPGFFNNR-VKTNNILLNEHR-IAKLSDYGLSIVSED--INSVGGKQEDPNSW-- 659
               +I     +R +K +NI +       K+ D GL+ +       +V G  E    +  
Sbjct: 148 RTPPII-----HRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPE----FMA 198

Query: 660 -EMTKLED----DVFSFGFMLLESVAG---------PSVAARKGQF--LQEELDSLNSQE 703
            EM + +     DV++FG  +LE              +   R+          D +   E
Sbjct: 199 PEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPE 258

Query: 704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
            +                      I   CI      R S +D+L
Sbjct: 259 VK---------------------EIIEGCIRQNKDERYSIKDLL 281

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 52/217 (23%)

Query: 487 MSAIMGEGSYGKLYKGRLENG----TSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHL 541
           ++ I+GEG +G++Y+G   N      +VA++          +   +    ++  L HPH+
Sbjct: 16  LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHI 75

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V L+G   +            +++ E    G    ++  N     L     +   + + K
Sbjct: 76  VKLIGIIEE---------EPTWIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICK 124

Query: 602 AVQFLHTGVIPGFFNN--------RVKTNNILLNEHRIAKLSDYGLSIVSED---INSVG 650
           A+ +L +        N        R    NIL+      KL D+GLS   ED     +  
Sbjct: 125 AMAYLES-------INCVHRDIAVR----NILVASPECVKLGDFGLSRYIEDEDYYKASV 173

Query: 651 GKQEDPNSWEMTKLED----------DVFSFGFMLLE 677
            +   P  W     E           DV+ F   + E
Sbjct: 174 TRL--PIKW--MSPESINFRRFTTASDVWMFAVCMWE 206

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 57/307 (18%), Positives = 123/307 (40%), Gaps = 83/307 (27%)

Query: 492 GEGSYGKLYKGRL--------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKL-RHPHL 541
           GEG +G++             +   +VA++ L   + +  + +L   ++++  + +H ++
Sbjct: 90  GEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 149

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH-------------ISENTPGKVLN 588
           + LLG C   G         ++++ E+ S GN R +                  P + + 
Sbjct: 150 INLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 201

Query: 589 WSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS- 640
           + + ++    +A+ +++L      H          R +   N+L+ E+ + K++D+GL+ 
Sbjct: 202 FKDLVSCTYQLARGMEYLASQKCIH----------RDLAARNVLVTENNVMKIADFGLAR 251

Query: 641 -IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE--SVAG---PSVA 685
            I + D          P  W M    L D       DV+SFG ++ E  ++ G   P + 
Sbjct: 252 DINNIDYYKKTTNGRLPVKW-MAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP 310

Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVI-SIANKCICSESWSRPSFE 744
                  +E    L  +EG  R+  P         + +  +  +   C  +    RP+F+
Sbjct: 311 V------EELFKLL--KEG-HRMDKP--------ANCTNELYMMMRDCWHAVPSQRPTFK 353

Query: 745 DILWNLQ 751
            ++ +L 
Sbjct: 354 QLVEDLD 360

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 35/194 (18%), Positives = 76/194 (39%), Gaps = 54/194 (27%)

Query: 467 LPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRN 525
            P C            + ++  A +G+G++G+++K R  + G  VA++            
Sbjct: 10  CPFCDE---------VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALK------------ 48

Query: 526 LKLRLD---------------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMS 570
            K+ ++               +L  L+H ++V L+  C       +     ++LV++F  
Sbjct: 49  -KVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 107

Query: 571 NGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNIL 625
           + +    +S          SE   V+  +   + ++H         N++     K  N+L
Sbjct: 108 H-DLAGLLS--NVLVKFTLSEIKRVMQMLLNGLYYIH--------RNKILHRDMKAANVL 156

Query: 626 LNEHRIAKLSDYGL 639
           +    + KL+D+GL
Sbjct: 157 ITRDGVLKLADFGL 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 47/170 (27%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
           SVP  I      + L L            F  L  LT+L++  N+L          ++ L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 217 SDLDLSKNAISGSLPDL--SSLGSLNVLNLSDNKLDSNLPKLPRG-------LVMAFLSN 267
             L L+ N ++ SLP      L  L+ L L  N+L S    LP G       L    L+ 
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS----LPSGVFDRLTKLKELRLNT 140

Query: 268 NSFSGEIPK-QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
           N     IP   + +L  LQ L +S N L+ +P  A   L  +  + L  N
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 24/165 (14%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDN 176
                L L S G+          L  L +L+L  N L  ++   +   + +L TL L +N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
              +     FD L  L  L +  N+L    +G F     R++ L +L L+ N +  S+P 
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF----DRLTKLKELRLNTNQLQ-SIPA 148

Query: 233 --LSSLGSLNVLNLSDNKLDSNLPKLPRG-------LVMAFLSNN 268
                L +L  L+LS N+L S    +P G       L    L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQS----VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLIL 173
            LT L  L L +  +  SLP  +   L  L+ L L  N L  S+P  +   + KL+ L L
Sbjct: 81  DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
           + N   +     FD L +L  LS+  N+L      +  R+  L  + L  N
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 28/169 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVA---IRCLPSSKKYTVRNLKLRLDLLAKLRH 538
            NF +   +G G + ++Y+   L +G  VA   ++           +    +DLL +L H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER--LAVL 596
           P+++      I+         N++ +V E    G+    I      K L   ER      
Sbjct: 92  PNVIKYYASFIED--------NELNIVLELADAGDLSRMIKHFKKQKRL-IPERTVWKYF 142

Query: 597 IGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           + +  A++ +H        + RV     K  N+ +    + KL D GL 
Sbjct: 143 VQLCSALEHMH--------SRRVMHRDIKPANVFITATGVVKLGDLGLG 183

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 53/239 (22%), Positives = 86/239 (35%), Gaps = 67/239 (28%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLRLDLL--A 534
           +   +   +G G++G++ +             +VA++ L   K+           L+   
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKML---KEGA--THSEHRALMSEL 81

Query: 535 KL-----RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT------------- 576
           K+      H ++V LLG C   GG        + ++ EF   GN  T             
Sbjct: 82  KILIHIGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYK 134

Query: 577 HISENTPGKVLNWSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEH 629
              E+     L     +     VAK ++FL      H          R +   NILL+E 
Sbjct: 135 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIH----------RDLAARNILLSEK 184

Query: 630 RIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
            + K+ D+GL+  I  +      G    P  W M    + D       DV+SFG +L E
Sbjct: 185 NVVKICDFGLARDIYKDPDYVRKGDARLPLKW-MAPETIFDRVYTIQSDVWSFGVLLWE 242

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 69.2 bits (170), Expect = 7e-13
 Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 65/241 (26%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAK 535
            N  +   +GEG +GK+ K            T+VA++ L  ++    +R+L    ++L +
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT------------------- 576
           + HPH++ L G C   G         + L+ E+   G+ R                    
Sbjct: 83  VNHPHVIKLYGACSQDG--------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR 134

Query: 577 --HISENTPGKVLNWSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLN 627
                ++   + L   + ++    +++ +Q+L      H          R +   NIL+ 
Sbjct: 135 NSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVH----------RDLAARNILVA 184

Query: 628 EHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLL 676
           E R  K+SD+GLS  +  ED      +   P  W M    L D       DV+SFG +L 
Sbjct: 185 EGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKW-MAIESLFDHIYTTQSDVWSFGVLLW 243

Query: 677 E 677
           E
Sbjct: 244 E 244

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 44/227 (19%), Positives = 95/227 (41%), Gaps = 60/227 (26%)

Query: 492 GEGSYGKLYKGRL--------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKL-RHPHL 541
           GEG++G++             +   +VA++ L   + +  + +L   ++++  + +H ++
Sbjct: 44  GEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 103

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH-------------ISENTPGKVLN 588
           + LLG C   G         ++++ E+ S GN R +                  P + + 
Sbjct: 104 INLLGACTQDG--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 155

Query: 589 WSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS- 640
           + + ++    +A+ +++L      H          R +   N+L+ E+ + K++D+GL+ 
Sbjct: 156 FKDLVSCTYQLARGMEYLASQKCIH----------RDLAARNVLVTENNVMKIADFGLAR 205

Query: 641 -IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
            I + D          P  W M    L D       DV+SFG ++ E
Sbjct: 206 DINNIDYYKKTTNGRLPVKW-MAPEALFDRVYTHQSDVWSFGVLMWE 251

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL--------ENGTSVAIRCLPSSKKYTVRNLKLRLDLLA 534
            +   +  +G+G++ K++KG           + T V ++ L  + +    +      +++
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMS 67

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           KL H HLV   G C+ G        ++  LV EF+  G+  T++ +N     +N   +L 
Sbjct: 68  KLSHKHLVLNYGVCVCG--------DENILVQEFVKFGSLDTYLKKN--KNCINILWKLE 117

Query: 595 VLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLN--------EHRIAKLSDYGL 639
           V   +A A+ FL      H            V   NILL              KLSD G+
Sbjct: 118 VAKQLAAAMHFLEENTLIH----------GNVCAKNILLIREEDRKTGNPPFIKLSDPGI 167

Query: 640 SIVSED 645
           SI    
Sbjct: 168 SITVLP 173

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 48/166 (28%), Positives = 65/166 (39%), Gaps = 35/166 (21%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQR 212
           SVP  I T    Q L L DN      P  FDSL +L  L + +N+L     G F      
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF----DS 86

Query: 213 ISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSF 270
           ++ L+ LDL  N ++  LP      L  L  L +  NKL      LPRG           
Sbjct: 87  LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE----LPRG----------- 130

Query: 271 SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                    +L  L  L +  N L+ +P  A   L +++   L  N
Sbjct: 131 -------IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDN 176
           T+ ++L L    I    P     L +L+ L L SN L G++P  +  ++ +L  L L  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LS 234
                    FD L  L  L M  NKL    P  I+R++ L+ L L +N +  S+P     
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156

Query: 235 SLGSLNVLNLSDN 247
            L SL    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 70/232 (30%)

Query: 492 GEGSYGKLYKGRL--------ENGTSVAIRCLPSSKKYTVRNLKLRLDLL--AKL----- 536
           GEG++G++                T VA++ L   K       K   DL+   ++     
Sbjct: 78  GEGAFGQVVLAEAIGLDKDKPNRVTKVAVKML---KSDA--TEKDLSDLISEMEMMKMIG 132

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT-------------HISENTP 583
           +H +++ LLG C   G         ++++ E+ S GN R              +   + P
Sbjct: 133 KHKNIINLLGACTQDG--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNP 184

Query: 584 GKVLNWSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIAKLSD 636
            + L+  + ++    VA+ +++L      H          R +   N+L+ E  + K++D
Sbjct: 185 EEQLSSKDLVSCAYQVARGMEYLASKKCIH----------RDLAARNVLVTEDNVMKIAD 234

Query: 637 YGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
           +GL+  I   D          P  W M    L D       DV+SFG +L E
Sbjct: 235 FGLARDIHHIDYYKKTTNGRLPVKW-MAPEALFDRIYTHQSDVWSFGVLLWE 285

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHP 539
            ++++   +G GSYG+  K R   +G  +  + L      +   + L   ++LL +L+HP
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER--LAVLI 597
           ++V      ID           +++V E+   G+  + I++ T  +     E   L V+ 
Sbjct: 66  NIVRYYDRIIDRTN------TTLYIVMEYCEGGDLASVITKGTKERQY-LDEEFVLRVMT 118

Query: 598 GVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
            +  A++  H         + V     K  N+ L+  +  KL D+GL+
Sbjct: 119 QLTLALKECHR---RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 69/234 (29%)

Query: 492 GEGSYGKLYKGRLENG------TSVAIRCLPSSKKYTVRNLKLRLDLL------AKLRHP 539
           GEG++G++++ R          T VA++ L         +  ++ D        A+  +P
Sbjct: 56  GEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-----ASADMQADFQREAALMAEFDNP 110

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT---------------------HI 578
           ++V LLG C  G          + L++E+M+ G+                          
Sbjct: 111 NIVKLLGVCAVGK--------PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 162

Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIAKL 634
             +     L+ +E+L +   VA  + +L            V     T N L+ E+ + K+
Sbjct: 163 VSSPGPPPLSCAEQLCIARQVAAGMAYLSE-------RKFVHRDLATRNCLVGENMVVKI 215

Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSWEMTK--LED-------DVFSFGFMLLE 677
           +D+GLS  I S D     G    P  W M    +         DV+++G +L E
Sbjct: 216 ADFGLSRNIYSADYYKADGNDAIPIRW-MPPESIFYNRYTTESDVWAYGVVLWE 268

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLL 533
           L  L++    F++  ++G G+YG++YKGR ++ G   AI+ +  +       +K  +++L
Sbjct: 16  LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINML 74

Query: 534 AKL-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
            K   H ++    G  I          ++++LV EF   G+    + +NT G  L     
Sbjct: 75  KKYSHHRNIATYYGAFIKKNPPGM--DDQLWLVMEFCGAGSVTD-LIKNTKGNTLKEEWI 131

Query: 593 LAVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             +   + + +  LH   VI     +R +K  N+LL E+   KL D+G+S
Sbjct: 132 AYICREILRGLSHLHQHKVI-----HRDIKGQNVLLTENAEVKLVDFGVS 176

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 29/167 (17%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           G+G+YG +Y GR L N   +AI+ +P       + L   + L   L+H ++V  LG   +
Sbjct: 31  GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE 90

Query: 551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA------VLIGVAKAVQ 604
                      + +  E +  G+    +  +  G  L  +E+        +L G+     
Sbjct: 91  N--------GFIKIFMEQVPGGSLSA-LLRSKWGP-LKDNEQTIGFYTKQILEGLK---- 136

Query: 605 FLHT-GVIPGFFNNR-VKTNNILLNEHR-IAKLSDYGLSIVSEDINS 648
           +LH   ++     +R +K +N+L+N +  + K+SD+G S     IN 
Sbjct: 137 YLHDNQIV-----HRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 60/236 (25%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAK 535
           N       +G G++GK+ +         +   +VA++ L PS+       L   L +L+ 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           L  H ++V LLG C  GG           ++ E+   G+    +       + + +    
Sbjct: 83  LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 595 V-----------LIG----VAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRIA 632
           +           L+     VAK + FL      H          R +   NILL   RI 
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIH----------RDLAARNILLTHGRIT 184

Query: 633 KLSDYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
           K+ D+GL+  I ++    V G    P  W M    + +       DV+S+G  L E
Sbjct: 185 KICDFGLARDIKNDSNYVVKGNARLPVKW-MAPESIFNCVYTFESDVWSYGIFLWE 239

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
           +++   +G+G++GK+YK +  E G   A + + +  +  + +  + +++LA   HP++V 
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
           LLG              K++++ EF   G     I        L   +   V   + +A+
Sbjct: 81  LLGAYYHD--------GKLWIMIEFCPGGAV-DAIMLELDRG-LTEPQIQVVCRQMLEAL 130

Query: 604 QFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            FLH+  +I     +R +K  N+L+      +L+D+G+S
Sbjct: 131 NFLHSKRII-----HRDLKAGNVLMTLEGDIRLADFGVS 164

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 28/188 (14%), Positives = 69/188 (36%), Gaps = 39/188 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD----------- 531
           N++ +   + +G + K+     ++    A++    S     R+     +           
Sbjct: 31  NDYRIIRTLNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDD 89

Query: 532 ------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN---T 582
                 ++  +++ + +   G   +         ++V+++YE+M N +            
Sbjct: 90  FKNELQIITDIKNEYCLTCEGIITNY--------DEVYIIYEYMENDSILKFDEYFFVLD 141

Query: 583 PGKVLNWSERLAVLI--GVAKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDY 637
                    ++   I   V  +  ++H    +      +R VK +NIL++++   KLSD+
Sbjct: 142 KNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNIC-----HRDVKPSNILMDKNGRVKLSDF 196

Query: 638 GLSIVSED 645
           G S    D
Sbjct: 197 GESEYMVD 204

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 10/276 (3%)

Query: 43  YPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNF-DGFASANASL 101
             +   +W+             Q             K           +    A+     
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 102 SENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPK 161
               S++      + L S + L  +       L   I  + +L+ L      L      K
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 162 ISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDL 221
               ++   L    + F             +  L + +  L       ++++  ++ LDL
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDL 470

Query: 222 SKNAISGSLPDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSG-EIPKQY 278
           S N +    P L++L  L VL  SDN L++   +  LPR L    L NN        +  
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR-LQELLLCNNRLQQSAAIQPL 529

Query: 279 GQLNQLQQLDMSFNALRGMPPP---AIFSLPNISDL 311
               +L  L++  N+L             LP++S +
Sbjct: 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 186 FDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLS 245
             +   L    +   K      S ++    L +L+        ++  +  + +L+ L   
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI--ILLMRALDPLLYE 401

Query: 246 DNKLD--SNLPKL-PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI 302
              L   S L  + P          + F  E      +   ++ L ++   L  +    +
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--L 459

Query: 303 FSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT 343
             L  ++ L+L+ N+   +LP  L     L     S+N L 
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 44/192 (22%)

Query: 466 GLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAI------------ 512
           G     +         T+ ++  A +G G+YG +YK R   +G  VA+            
Sbjct: 1   GPLGSMA---------TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGG 51

Query: 513 RCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG 572
             LP S   TVR + L L  L    HP++V L+  C       +    KV LV+E +   
Sbjct: 52  GGLPIS---TVREVAL-LRRLEAFEHPNVVRLMDVCATSRTDRE---IKVTLVFEHVDQ- 103

Query: 573 NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLN 627
           + RT++ +  P   L       ++    + + FLH         N +     K  NIL+ 
Sbjct: 104 DLRTYL-DKAPPPGLPAETIKDLMRQFLRGLDFLH--------ANCIVHRDLKPENILVT 154

Query: 628 EHRIAKLSDYGL 639
                KL+D+GL
Sbjct: 155 SGGTVKLADFGL 166

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 27/166 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAI-RCLPSSKKYTVRNLKLR-LDLLAKLRHP 539
             ++   ++GEGSYG + K R  + G  VAI + L S     V+ + +R + LL +LRH 
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHE 84

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           +LV LL  C            + +LV+EF+ +      +     G  L++      L  +
Sbjct: 85  NLVNLLEVCKKK--------KRWYLVFEFVDH-TILDDLELFPNG--LDYQVVQKYLFQI 133

Query: 600 AKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
              + F H        ++ +     K  NIL+++  + KL D+G +
Sbjct: 134 INGIGFCH--------SHNIIHRDIKPENILVSQSGVVKLCDFGFA 171

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHP--HLVCLLGH 547
           G G   K+++   E     AI+ +    +   T+ + +  +  L KL+     ++ L  +
Sbjct: 37  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY 96

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
            I            +++V E   N +  + + +    K ++  ER +    + +AV  +H
Sbjct: 97  EITD--------QYIYMVMEC-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH 144

Query: 608 TGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
                    + +     K  N L+ +  + KL D+G++
Sbjct: 145 --------QHGIVHSDLKPANFLIVDGML-KLIDFGIA 173

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 27/177 (15%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLR--LD 531
            + E   +F +  ++G+GS+  +Y+   +  G  VAI+ +      K  +   +++  + 
Sbjct: 5   CIGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQ-RVQNEVK 63

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           +  +L+HP ++ L  +  D         N V+LV E   NG    ++      K    SE
Sbjct: 64  IHCQLKHPSILELYNYFEDS--------NYVYLVLEMCHNGEMNRYLKNR--VKPF--SE 111

Query: 592 RLA--VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSE 644
             A   +  +   + +LH+ G++     +R +  +N+LL  +   K++D+GL+   +
Sbjct: 112 NEARHFMHQIITGMLYLHSHGIL-----HRDLTLSNLLLTRNMNIKIADFGLATQLK 163

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 66.4 bits (163), Expect = 6e-12
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 43/173 (24%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK-------LR-LDLL 533
             ++    +GEGSYG ++K R  + G  VAI      KK+             LR + +L
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAI------KKFLESEDDPVIKKIALREIRML 56

Query: 534 AKLRHPHLVCLLGHCIDGGGRDD--YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
            +L+HP+LV LL          +      ++ LV+E+  +      +      + +    
Sbjct: 57  KQLKHPNLVNLL----------EVFRRKRRLHLVFEYCDH-TVLHELDRY--QRGVPEHL 103

Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGL 639
             ++     +AV F H         +       K  NIL+ +H + KL D+G 
Sbjct: 104 VKSITWQTLQAVNFCH--------KHNCIHRDVKPENILITKHSVIKLCDFGF 148

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 28/158 (17%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHP--HLVCLLGH 547
           G G   K+++   E     AI+ +    +   T+ + +  +  L KL+     ++ L  +
Sbjct: 18  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY 77

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
            I            +++V E   N +  + + +    K ++  ER +    + +AV  +H
Sbjct: 78  EITD--------QYIYMVMEC-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH 125

Query: 608 TGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
                    + +     K  N L+ +  + KL D+G++
Sbjct: 126 --------QHGIVHSDLKPANFLIVDGML-KLIDFGIA 154

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCI 549
            EG +  +Y+ + + +G   A++ L S+++   R +   +  + KL  HP++V       
Sbjct: 37  AEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAAS 96

Query: 550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG 609
            G    D    +  L+ E    G     + +      L+    L +     +AVQ +H  
Sbjct: 97  IGKEESDTGQAEFLLLTEL-CKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ 155

Query: 610 VIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             P    +R +K  N+LL+     KL D+G +
Sbjct: 156 KPP--IIHRDLKVENLLLSNQGTIKLCDFGSA 185

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 26/175 (14%)

Query: 475 LEELKEATNNFDMSAI------MGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK 527
           LE+L+   +  D          +G+G+ G +Y    +  G  VAIR +   ++     + 
Sbjct: 6   LEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII 65

Query: 528 LRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
             + ++ + ++P++V  L   + G        +++++V E+++ G+    ++E      +
Sbjct: 66  NEILVMRENKNPNIVNYLDSYLVG--------DELWVVMEYLAGGSLTDVVTETC----M 113

Query: 588 NWSERLAVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           +  +  AV     +A++FLH+  VI     +R +K++NILL      KL+D+G  
Sbjct: 114 DEGQIAAVCRECLQALEFLHSNQVI-----HRDIKSDNILLGMDGSVKLTDFGFC 163

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 66.0 bits (162), Expect = 7e-12
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 52/179 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD---------- 531
            NF     +GEG+YG +YK R    G  VA++             K+RLD          
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALK-------------KIRLDTETEGVPSTA 49

Query: 532 -----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
                LL +L HP++V LL              NK++LV+EF+   + +  + + +    
Sbjct: 50  IREISLLKELNHPNIVKLLDVIHTE--------NKLYLVFEFLHQ-DLKKFM-DASALTG 99

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           +      + L  + + + F H        ++RV     K  N+L+N     KL+D+GL+
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCH--------SHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 51/237 (21%), Positives = 86/237 (36%), Gaps = 75/237 (31%)

Query: 492 GEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLRLDLL--AKL-----RH 538
           G G++GK+                VA++ L         +   R  L+   K+      H
Sbjct: 54  GSGAFGKVMNATAYGISKTGVSIQVAVKMLKEK-----ADSSEREALMSELKMMTQLGSH 108

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRT--------------------HI 578
            ++V LLG C   G         ++L++E+   G+                        +
Sbjct: 109 ENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRL 160

Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFL------HTGVIPGFFNNR-VKTNNILLNEHRI 631
            E     VL + + L     VAK ++FL      H          R +   N+L+   ++
Sbjct: 161 EEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVH----------RDLAARNVLVTHGKV 210

Query: 632 AKLSDYGLS--IVSEDINSVGGKQEDPNSWEMT--KLED-------DVFSFGFMLLE 677
            K+ D+GL+  I+S+    V G    P  W M    L +       DV+S+G +L E
Sbjct: 211 VKICDFGLARDIMSDSNYVVRGNARLPVKW-MAPESLFEGIYTIKSDVWSYGILLWE 266

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 30/158 (18%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRC--LPSSKKYTVRNLKLRLDLLAKLRHP--HLVCLLGH 547
           G G   K+++   E     AI+   L  +   T+ + +  +  L KL+     ++ L  +
Sbjct: 65  GSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY 124

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
            I            +++V E   N +  + + +    K ++  ER +    + +AV  +H
Sbjct: 125 EITD--------QYIYMVMEC-GNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIH 172

Query: 608 TGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
                    + +     K  N L+ +  + KL D+G++
Sbjct: 173 --------QHGIVHSDLKPANFLIVDGML-KLIDFGIA 201

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 51/182 (28%)

Query: 481 ATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD-------- 531
           +++ F     +G G+Y  +YKG     G  VA++             +++LD        
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALK-------------EVKLDSEEGTPST 49

Query: 532 ------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN--GNFRTHISENTP 583
                 L+ +L+H ++V L               NK+ LV+EFM N    +    +    
Sbjct: 50  AIREISLMKELKHENIVRLYDVIHTE--------NKLTLVFEFMDNDLKKYMDSRTVGNT 101

Query: 584 GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYG 638
            + L  +        + + + F H         N++     K  N+L+N+    KL D+G
Sbjct: 102 PRGLELNLVKYFQWQLLQGLAFCHE--------NKILHRDLKPQNLLINKRGQLKLGDFG 153

Query: 639 LS 640
           L+
Sbjct: 154 LA 155

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 33/173 (19%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR--LENGTSVA---IRC------LPSSKKYTVRNLKLRLD 531
             ++  A +GEG+YGK++K R     G  VA   +R       +P S   T+R + + L 
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLS---TIREVAV-LR 66

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
            L    HP++V L   C       +    K+ LV+E +   +  T++ +  P   +    
Sbjct: 67  HLETFEHPNVVRLFDVCTVSRTDRE---TKLTLVFEHVDQ-DLTTYL-DKVPEPGVPTET 121

Query: 592 RLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGL 639
              ++  + + + FLH        ++RV     K  NIL+      KL+D+GL
Sbjct: 122 IKDMMFQLLRGLDFLH--------SHRVVHRDLKPQNILVTSSGQIKLADFGL 166

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC 543
            D    +GEGS G +   R   +G  VA++ +   K+     L   + ++   +H ++V 
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
           +    + G         +++++ EF+  G   T I        LN  +   V   V +A+
Sbjct: 107 MYKSYLVG--------EELWVLMEFLQGGAL-TDIVSQVR---LNEEQIATVCEAVLQAL 154

Query: 604 QFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            +LH  GVI     +R +K+++ILL      KLSD+G  
Sbjct: 155 AYLHAQGVI-----HRDIKSDSILLTLDGRVKLSDFGFC 188

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           G      +   R    G  V +R +   +     V  L+  L +     HP++V      
Sbjct: 36  GFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATF 95

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
           I          N++++V  FM+ G+    +        +N      +L GV KA+ ++H 
Sbjct: 96  IAD--------NELWVVTSFMAYGSA-KDLICTHFMDGMNELAIAYILQGVLKALDYIHH 146

Query: 609 -GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ 653
            G +     +R VK ++IL++      LS       +  + S G +Q
Sbjct: 147 MGYV-----HRSVKASHILISVDGKVYLSGLR---SNLSMISHGQRQ 185

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 52/178 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD----------- 531
             +     +GEG+YG +YK +   G  VA++             ++RLD           
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALK-------------RIRLDAEDEGIPSTAI 67

Query: 532 ----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
               LL +L HP++V L+                + LV+EFM   + +  +  +     L
Sbjct: 68  REISLLKELHHPNIVSLIDVIHSE--------RCLTLVFEFMEK-DLKKVL--DENKTGL 116

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
             S+    L  + + V   H         +R+     K  N+L+N     KL+D+GL+
Sbjct: 117 QDSQIKIYLYQLLRGVAHCH--------QHRILHRDLKPQNLLINSDGALKLADFGLA 166

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 26/162 (16%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
           SVP  I    +   L L+ N   +     FD L SLT L +  NKL         ++++L
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI 274
           + L+LS N +  SLP+     L  L  L L+ N+L S    LP G    F          
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS----LPDG---VF---------- 120

Query: 275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                +L QL+ L +  N L+ +P      L ++  + L  N
Sbjct: 121 ----DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 30/204 (14%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDD 175
            L S+  +   +  I  S+   I  L ++ YL L  N L       +  +  L  LIL  
Sbjct: 39  ELNSIDQIIANNSDI-KSVQG-IQYLPNVRYLALGGNKL--HDISALKELTNLTYLILTG 94

Query: 176 NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSI-QRISTLSDLDLSKNAISGSLPD-- 232
           N   +     FD L +L  L +  N+L    P  +  +++ L+ L+L+ N +  SLP   
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGV 152

Query: 233 LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFN 292
              L +L  L+LS N+L S    LP G+                 + +L QL+ L +  N
Sbjct: 153 FDKLTNLTELDLSYNQLQS----LPEGV-----------------FDKLTQLKDLRLYQN 191

Query: 293 ALRGMPPPAIFSLPNISDLNLASN 316
            L+ +P      L ++  + L  N
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 29/187 (15%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
               +   L S++ +  +++ +       I  +  ++ L L  N  +  I      L +L
Sbjct: 33  DAVTQNE-LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-DISA-LKELTNL 87

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
           T+L +  N+L         +++ L +L L +N +  SLPD     L +L  LNL+ N+L 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 251 SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISD 310
           S    LP+G+                 + +L  L +LD+S+N L+ +P      L  + D
Sbjct: 147 S----LPKGV-----------------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185

Query: 311 LNLASNK 317
           L L  N+
Sbjct: 186 LRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 36/191 (18%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
             P       +     L      + +    + L S+  +   N+ +       IQ +  +
Sbjct: 12  IFPDDAFA--ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNV 65

Query: 217 SDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPK 276
             L L  N +   +  L  L +L  L L+ N+L S             L N  F      
Sbjct: 66  RYLALGGNKLH-DISALKELTNLTYLILTGNQLQS-------------LPNGVFDK---- 107

Query: 277 QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK----NLNCGGKL 332
               L  L++L +  N L+ +P      L N++ LNLA N+   SLPK     L     L
Sbjct: 108 ----LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKL---TNL 159

Query: 333 VFFDISNNKLT 343
              D+S N+L 
Sbjct: 160 TELDLSYNQLQ 170

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 53/179 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD---------- 531
             ++    +GEG+YG ++K +  E    VA++             ++RLD          
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALK-------------RVRLDDDDEGVPSSA 48

Query: 532 -----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
                LL +L+H ++V L                K+ LV+EF    + + +   ++    
Sbjct: 49  LREICLLKELKHKNIVRLHDVLHSD--------KKLTLVFEFCDQ-DLKKYF--DSCNGD 97

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           L+     + L  + K + F H        +  V     K  N+L+N +   KL+++GL+
Sbjct: 98  LDPEIVKSFLFQLLKGLGFCH--------SRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 32/186 (17%)

Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLPSSKKYTVRNLKLR 529
            E +  +    +  ++GEG++ ++Y+         +N     ++    +  +        
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117

Query: 530 LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNW 589
           ++ L        +      +          N   LV E  S G     I+          
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQ--------NGSVLVGELYSYGTLLNAINLYKNTPEKVM 169

Query: 590 SERLAVLIG--VAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIA-----------KLS 635
            + L +     +   ++ +H   +I G     +K +N +L    +             L 
Sbjct: 170 PQGLVISFAMRMLYMIEQVHDCEIIHG----DIKPDNFILGNGFLEQDDEDDLSAGLALI 225

Query: 636 DYGLSI 641
           D G SI
Sbjct: 226 DLGQSI 231

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 64.3 bits (156), Expect = 5e-11
 Identities = 25/250 (10%), Positives = 60/250 (24%), Gaps = 40/250 (16%)

Query: 467 LPACRSFTLE-ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT-- 522
            P     T++  L +      +   +  G    ++  R +E     A++      + +  
Sbjct: 45  WPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRS 104

Query: 523 -VRNLKLRLDLLAKLRHPHLVCLLGHC------------------IDGGGRDDYAVNKVF 563
            +  L       A+L                                  G+DDYAV    
Sbjct: 105 ELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYL 164

Query: 564 LVYEFM--SNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRV 619
           L+            + +                 +   + +    L + G++    +   
Sbjct: 165 LLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLV----HGHF 220

Query: 620 KTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQE-------DPNSWEMTKLEDDVFSF 671
             +N+ +       L D      V     +             + ++   T    + +  
Sbjct: 221 TPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTH-ALNAWQL 279

Query: 672 GFMLLESVAG 681
           G  +      
Sbjct: 280 GLSIYRVWCL 289

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 32/168 (19%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL-KLR--LDLLAKLRHP 539
            +     +G+G + K ++    +     A + +P S         K+   + +   L H 
Sbjct: 42  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQ 101

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VLI 597
           H+V   G   D         + VF+V E     +            +   +E  A   L 
Sbjct: 102 HVVGFHGFFED--------NDFVFVVLELCRRRSLLELHKRR--KAL---TEPEARYYLR 148

Query: 598 GVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
            +    Q+LH         NRV     K  N+ LNE    K+ D+GL+
Sbjct: 149 QIVLGCQYLH--------RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 188

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 28/182 (15%)

Query: 471 RSFTLEELKEATNNFDMSAI------MGEGSYGKLYKGR-LENGTSVAIRCLP---SSKK 520
            S    ++ E     D   +      +G GS+G +Y  R + N   VAI+ +        
Sbjct: 36  GSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN 95

Query: 521 YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE 580
              +++   +  L KLRHP+ +   G  +          +  +LV E+       + + E
Sbjct: 96  EKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE--------HTAWLVMEYCLGSA--SDLLE 145

Query: 581 NTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYG 638
                 L   E  AV  G  + + +LH+  +I     +R VK  NILL+E  + KL D+G
Sbjct: 146 VHKKP-LQEVEIAAVTHGALQGLAYLHSHNMI-----HRDVKAGNILLSEPGLVKLGDFG 199

Query: 639 LS 640
            +
Sbjct: 200 SA 201

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 34/169 (20%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLR--LDLLAKLRH 538
            +     +G+G + K ++    +     A + +P S   K   R  K+   + +   L H
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE-KMSMEISIHRSLAH 74

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VL 596
            H+V       +    D+   + VF+V E     +            +   +E  A   L
Sbjct: 75  QHVVGFH-GFFE----DN---DFVFVVLELCRRRSLLELHKRR--KAL---TEPEARYYL 121

Query: 597 IGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
             +    Q+LH         NRV     K  N+ LNE    K+ D+GL+
Sbjct: 122 RQIVLGCQYLH--------RNRVIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 37/281 (13%), Positives = 83/281 (29%), Gaps = 47/281 (16%)

Query: 444 GFSSEVLTNARYVSEAAKLGSEGLPACRSFTLE-ELKEATNNFDMSAIMGEGSYGKLYKG 502
             +    +     +  + + +      + F +E EL E         ++G+       + 
Sbjct: 33  QANVRTTSEYMQSAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEA 92

Query: 503 R-LENGTSVAIRCLPSSKKYTVRNLK------LRLDLLAKLRHPH-------------LV 542
              E G S  +     +++     +K      LRL LL  +++               LV
Sbjct: 93  TDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 152

Query: 543 CLLGHCID---GGGRDDYAVNKVFLVYEFMSNGN---FRTHISENTPGKVLNWSERLAVL 596
                           D  V   F +Y  M +         +S ++  K L    RL + 
Sbjct: 153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLT 212

Query: 597 IGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS------------ 643
           + V + +  LH  G++       ++  +I+L++     L+ +   +              
Sbjct: 213 LQVIRLLASLHHYGLVHT----YLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGF 268

Query: 644 ---EDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
              E            +   +     D ++ G ++      
Sbjct: 269 EPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCA 309

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 35/160 (21%), Positives = 79/160 (49%), Gaps = 21/160 (13%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP-SSKKYTVRNLKLRLDLLAKLRHPHLV 542
           F     +G+GS+G+++KG        VAI+ +     +  + +++  + +L++   P++ 
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
              G  +           K++++ E++  G+    + E  P   L+ ++   +L  + K 
Sbjct: 84  KYYGSYLKD--------TKLWIIMEYLGGGSA-LDLLEPGP---LDETQIATILREILKG 131

Query: 603 VQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           + +LH+   I     +R +K  N+LL+EH   KL+D+G++
Sbjct: 132 LDYLHSEKKI-----HRDIKAANVLLSEHGEVKLADFGVA 166

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 52/178 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLD----------- 531
             +     +GEG+YG +YK +   G + A++             K+RL+           
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALK-------------KIRLEKEDEGIPSTTI 48

Query: 532 ----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
               +L +L+H ++V L                ++ LV+E +   + +  +  +     L
Sbjct: 49  REISILKELKHSNIVKLYDVIHTK--------KRLVLVFEHLDQ-DLKKLL--DVCEGGL 97

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
                 + L+ +   + + H        + RV     K  N+L+N     K++D+GL+
Sbjct: 98  ESVTAKSFLLQLLNGIAYCH--------DRRVLHRDLKPQNLLINREGELKIADFGLA 147

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 36/207 (17%), Positives = 75/207 (36%), Gaps = 68/207 (32%)

Query: 459 AAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPS 517
              +     P+  S          + +     +GEG+YG++YK        +VAI+    
Sbjct: 19  PGSMSVSAAPSATS---------IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIK---- 65

Query: 518 SKKYTVRNLKLRLD---------------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV 562
                    ++RL+               LL +L+H +++ L               +++
Sbjct: 66  ---------RIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN--------HRL 108

Query: 563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV--- 619
            L++E+  N + + ++ +N     ++     + L  +   V F H+         R    
Sbjct: 109 HLIFEYAEN-DLKKYMDKNPD---VSMRVIKSFLYQLINGVNFCHS--------RRCLHR 156

Query: 620 --KTNNILLNEHRIA-----KLSDYGL 639
             K  N+LL+    +     K+ D+GL
Sbjct: 157 DLKPQNLLLSVSDASETPVLKIGDFGL 183

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 52/178 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD---------- 531
             +     +GEG+Y  +YKG+       VA++             ++RL+          
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALK-------------EIRLEHEEGAPCTAI 48

Query: 532 ----LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
               LL  L+H ++V L                 + LV+E++   + + ++  +  G ++
Sbjct: 49  REVSLLKDLKHANIVTLHDIIHTE--------KSLTLVFEYLDK-DLKQYL--DDCGNII 97

Query: 588 NWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLS 640
           N       L  + + + + H          +V     K  N+L+NE    KL+D+GL+
Sbjct: 98  NMHNVKLFLFQLLRGLAYCH--------RQKVLHRDLKPQNLLINERGELKLADFGLA 147

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 475 LEELKEATNN------FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLK 527
           L++L E +        FD+   +GEGSYG +YK    E G  VAI+ +P      ++ + 
Sbjct: 15  LKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--LQEII 72

Query: 528 LRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
             + ++ +   PH+V   G               +++V E+   G+  + I        L
Sbjct: 73  KEISIMQQCDSPHVVKYYGSYFKN--------TDLWIVMEYCGAGSV-SDIIRLRNKT-L 122

Query: 588 NWSERLAVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
              E   +L    K +++LH    I     +R +K  NILLN    AKL+D+G++
Sbjct: 123 TEDEIATILQSTLKGLEYLHFMRKI-----HRDIKAGNILLNTEGHAKLADFGVA 172

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
            +P  I   V    L LD N F   +P    +   LT + + NN+++     S   ++ L
Sbjct: 24  VLPKGIPRDV--TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRG-------LVMAFLSN 267
             L LS N +   +P      L SL +L+L  N +      +P G       L    +  
Sbjct: 81  LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFNDLSALSHLAIGA 135

Query: 268 N 268
           N
Sbjct: 136 N 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWFDSLPS 191
            +P ++     L  +DLS+N +  ++  +  S M +L TLIL  N      P  FD L S
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103

Query: 192 LTFLSMRNNKL 202
           L  LS+  N +
Sbjct: 104 LRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL-- 202
             L L  N     VP ++S    L  + L +N  +      F ++  L  L +  N+L  
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 203 --AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
                F      + +L  L L  N IS  +P+   + L +L+ L +  N L 
Sbjct: 93  IPPRTF----DGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 22/106 (20%)

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY 278
           L L  N  +    +LS+   L +++LS+N++ +             LSN SFS       
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST-------------LSNQSFS------- 75

Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK 324
             + QL  L +S+N LR +PP     L ++  L+L  N  S  +P+
Sbjct: 76  -NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 40/212 (18%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPS---SKKYTVRNLKLRLDLLAKLRHP 539
           +F   + +G GSYG+++K R  E+G   A++   S     K   R L          +HP
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
             V L     +GG         ++L  E     + + H      G  L  ++    L   
Sbjct: 118 CCVRLEQAWEEGG--------ILYLQTEL-CGPSLQQHCEAW--GASLPEAQVWGYLRDT 166

Query: 600 AKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE--- 654
             A+  LH+ G++     +  VK  NI L      KL D+GL +    + + G  +    
Sbjct: 167 LLALAHLHSQGLV-----HLDVKPANIFLGPRGRCKLGDFGLLVE---LGTAGAGEVQEG 218

Query: 655 DPNSW---EMTKLED------DVFSFGFMLLE 677
           DP  +   E+  L+       DVFS G  +LE
Sbjct: 219 DPR-YMAPEL--LQGSYGTAADVFSLGLTILE 247

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 60.3 bits (147), Expect = 8e-10
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 42/180 (23%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD---- 531
           ++K     ++    +GEG +  +YK R       VAI      KK  + +     D    
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAI------KKIKLGHRSEAKDGINR 57

Query: 532 -------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG 584
                  LL +L HP+++ LL              + + LV++FM   +    I      
Sbjct: 58  TALREIKLLQELSHPNIIGLLDAFGHK--------SNISLVFDFMET-DLEVII--KDNS 106

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGL 639
            VL  S   A ++   + +++LH         + +     K NN+LL+E+ + KL+D+GL
Sbjct: 107 LVLTPSHIKAYMLMTLQGLEYLH--------QHWILHRDLKPNNLLLDENGVLKLADFGL 158

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 39/183 (21%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLA 534
           E +E  +       +G GS+G++++ +  + G   A+      KK  +   ++  L   A
Sbjct: 52  EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAV------KKVRLEVFRVEELVACA 105

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
            L  P +V L G   +G          V +  E +  G+    I +          E  A
Sbjct: 106 GLSSPRIVPLYGAVREG--------PWVNIFMELLEGGSLGQLIKQMGC-----LPEDRA 152

Query: 595 ------VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEH-RIAKLSDYGLSIVSED 645
                  L G+     +LHT  ++     +  VK +N+LL+     A L D+G ++  + 
Sbjct: 153 LYYLGQALEGLE----YLHTRRIL-----HGDVKADNVLLSSDGSRAALCDFGHALCLQP 203

Query: 646 INS 648
              
Sbjct: 204 DGL 206

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 44/175 (25%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           GEG+YG++          +VA++ +   +      N+K  + +   L H ++V       
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF----- 70

Query: 550 DGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV-----LIGVA 600
                  Y      N  +L  E+ S G     I  +    +    E  A      L+   
Sbjct: 71  -------YGHRREGNIQYLFLEYCSGGELFDRIEPD--IGM---PEPDAQRFFHQLMA-- 116

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
             V +LH           +     K  N+LL+E    K+SD+GL+ V    N   
Sbjct: 117 -GVVYLH--------GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER 162

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 49/203 (24%)

Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL 515
                +  EGL AC         E +  +   + +G G++G ++     E    V ++ +
Sbjct: 5   EPPKAVELEGLAACE-------GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFI 57

Query: 516 PSSK--------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV----NKVF 563
              K           +  + L + +L+++ H +++ +              +        
Sbjct: 58  KKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKV------------LDIFENQGFFQ 105

Query: 564 LVYEFMSNGN--FRTHISENTPGKVLNWSERLAVLI--GVAKAVQFLHT-GVIPGFFNNR 618
           LV E   +G   F   I  +         E LA  I   +  AV +L    +I     +R
Sbjct: 106 LVMEKHGSGLDLF-AFIDRHP-----RLDEPLASYIFRQLVSAVGYLRLKDII-----HR 154

Query: 619 -VKTNNILLNEHRIAKLSDYGLS 640
            +K  NI++ E    KL D+G +
Sbjct: 155 DIKDENIVIAEDFTIKLIDFGSA 177

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 36/162 (22%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL-KLR--LDLLAKLRHPHLVCLLGH 547
           G G++GK+  G     G  VA++ L   K  ++  + K++  +  L   RHPH++ L   
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKL--- 76

Query: 548 CIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV-----LIG 598
                    Y V       F+V E++S G    +I ++  G+V    E  A      ++ 
Sbjct: 77  ---------YQVISTPTDFFMVMEYVSGGELFDYICKH--GRV---EEMEARRLFQQILS 122

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
              AV + H        +  +K  N+LL+ H  AK++D+GLS
Sbjct: 123 ---AVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLS 158

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 47/271 (17%)

Query: 454 RYVSEAAKLGSEGL-PACRSFTLE-ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSV 510
              S A  L S  L    + F +E EL E         ++G+       +    E G S 
Sbjct: 47  YMQSAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESF 106

Query: 511 AIRCLPSSKKYTVRNLK------LRLDLLAKLRHPHLVCLLGHCID-------------- 550
            +     +++     +K      LRL LL  +++     +    I               
Sbjct: 107 EVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMI 166

Query: 551 --GGGRDDYAVNKVFLVYEFMSNGN---FRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
                  D  V   F +Y  M +         +S ++  K L    RL + + V + +  
Sbjct: 167 RVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLAS 226

Query: 606 LHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGG------------ 651
           LH  G++       ++  +I+L++     L+ +           S  G            
Sbjct: 227 LHHYGLVHT----YLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAER 282

Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
                 +   +     D ++ G  +      
Sbjct: 283 MLPFGQHHPTLMTFAFDTWTLGLAIYWIWCA 313

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 44/175 (25%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           GEG+YG++          +VA++ +   +      N+K  + +   L H ++V       
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF----- 70

Query: 550 DGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV-----LIGVA 600
                  Y      N  +L  E+ S G     I  +    +    E  A      L+   
Sbjct: 71  -------YGHRREGNIQYLFLEYCSGGELFDRIEPD--IGM---PEPDAQRFFHQLMA-- 116

Query: 601 KAVQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
             V +LH           +     K  N+LL+E    K+SD+GL+ V    N   
Sbjct: 117 -GVVYLH--------GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER 162

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 41/169 (24%)

Query: 492 GEGSYGKLYKGR---LENGTSVAIRCLPSSKKYTVRNL---KLR-LDLLAKLRHPHLVCL 544
           G G+YG +YK +    ++    A+      K+     +     R + LL +L+HP+++ L
Sbjct: 30  GRGTYGHVYKAKRKDGKDDKDYAL------KQIEGTGISMSACREIALLRELKHPNVISL 83

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSN-----GNFRTHISENTPGKVLNWSERLAVLIGV 599
               +       +A  KV+L++++  +       F      N     L      ++L  +
Sbjct: 84  QKVFL------SHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI 137

Query: 600 AKAVQFLHTGVIPGFFNNRV-----KTNNILL----NEHRIAKLSDYGL 639
              + +LH         N V     K  NIL+     E    K++D G 
Sbjct: 138 LDGIHYLH--------ANWVLHRDLKPANILVMGEGPERGRVKIADMGF 178

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 39/168 (23%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRHPHLVCLLGHC 548
           G+G++ K+   R +  G  VAI+ +  ++       KL   + ++  L HP++V L    
Sbjct: 24  GKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKL---- 79

Query: 549 IDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG--VAKA 602
                   + V      ++L+ E+ S G    ++  +  G++    E+ A      +  A
Sbjct: 80  --------FEVIETEKTLYLIMEYASGGEVFDYLVAH--GRM---KEKEARSKFRQIVSA 126

Query: 603 VQFLHTGVIPGFFNNRV-----KTNNILLNEHRIAKLSDYGLSIVSED 645
           VQ+ H          R+     K  N+LL+     K++D+G S     
Sbjct: 127 VQYCH--------QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 24/168 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT-VRNLKLRLDLLAKLRHPH 540
           +++++  ++G G+   +           VAI+ +   K  T +  L   +  +++  HP+
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL------A 594
           +V      +          ++++LV + +S G+    I ++   K  + S  L       
Sbjct: 75  IVSYYTSFVVK--------DELWLVMKLLSGGSV-LDIIKHIVAKGEHKSGVLDESTIAT 125

Query: 595 VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           +L  V + +++LH  G I     +R VK  NILL E    +++D+G+S
Sbjct: 126 ILREVLEGLEYLHKNGQI-----HRDVKAGNILLGEDGSVQIADFGVS 168

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 46/177 (25%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRL----DLLAKLRH 538
            + M  ++GEGSYGK+ +    E     A++ L   K   + N +  +     LL +LRH
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH 65

Query: 539 PHLVCLLGHCIDGGGRDDYAV------NKVFLVYEFMSNGNFR--THISENTPGKVLNWS 590
            +++ L              V       K+++V E+   G       + E    +     
Sbjct: 66  KNVIQL------------VDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPE---KRF---P 107

Query: 591 ERLAV-----LIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
              A      LI     +++LH+ G++     ++ +K  N+LL      K+S  G++
Sbjct: 108 VCQAHGYFCQLID---GLEYLHSQGIV-----HKDIKPGNLLLTTGGTLKISALGVA 156

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 36/162 (22%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL-KLR--LDLLAKLRHPHLVCLLGH 547
           G G++GK+  G+    G  VA++ L   K  ++  + K+R  +  L   RHPH++ L   
Sbjct: 25  GVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKL--- 81

Query: 548 CIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV-----LIG 598
                    Y V    + +F+V E++S G    +I +N  G++    E+ +      ++ 
Sbjct: 82  ---------YQVISTPSDIFMVMEYVSGGELFDYICKN--GRL---DEKESRRLFQQILS 127

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
               V + H        +  +K  N+LL+ H  AK++D+GLS
Sbjct: 128 ---GVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLS 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNW-FDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
                +     L  L +++      +       L  L  L++  + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 216 LSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD 250
           LS L+LS NA+           SL  L LS N L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPK-ISTMVKLQTLILDDNFFNNTIPNWFDSLPS 191
                +    +L  L + +      +  + +  + +L+ L +  +      P+ F   P 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
           L+ L++  N L         +  +L +L LS N
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 22/123 (17%)

Query: 221 LSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQ 280
               A+  SL  L    +L  L + + +   +L  L               G        
Sbjct: 16  TRDGALD-SLHHLPGAENLTELYIENQQ---HLQHLELR---------DLRG-------- 54

Query: 281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN 340
           L +L+ L +  + LR + P A    P +S LNL+ N    SL      G  L    +S N
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

Query: 341 KLT 343
            L 
Sbjct: 114 PLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 101 LSENFSIDSFVT-TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
           +     +       L  L  LR L++V  G+    PD  H    L  L+LS N L  S+ 
Sbjct: 38  IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLS 96

Query: 160 PKISTMVKLQTLILDDNFFN 179
            K    + LQ L+L  N  +
Sbjct: 97  WKTVQGLSLQELVLSGNPLH 116

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 54/232 (23%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIR--CLPSSKKYTVRNLKLRLDLLAKL-R 537
           T  F     +G G +G ++K     +G   AI+    P +     +N    +   A L +
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVL 596
           H H+V       +         + + +  E+ + G+    ISEN         +E   +L
Sbjct: 70  HSHVVRYFSAWAED--------DHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLL 121

Query: 597 IGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEH-------------------RIAKLS 635
           + V + ++++H+  ++     +  +K +NI ++                      + K+ 
Sbjct: 122 LQVGRGLRYIHSMSLV-----HMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIG 176

Query: 636 DYGLSIVSEDINSVGGKQEDPNSW---EMTKLED-------DVFSFGFMLLE 677
           D G            G   D   +   E+ + E+       D+F+    ++ 
Sbjct: 177 DLGHVTRISSPQVEEG---DSR-FLANEVLQ-ENYTHLPKADIFALALTVVC 223

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPN-WFDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
            +P  I        L+L+DN       +  F  LP L  L ++ N+L G  P++ +  S 
Sbjct: 22  EIPRDIPLHT--TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 216 LSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRG-------LVMAFLS 266
           + +L L +N I   + +     L  L  LNL DN++      +  G       L    L+
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSLTSLNLA 134

Query: 267 NNSF 270
           +N F
Sbjct: 135 SNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 145 EYLDLSSNFLFGSVPPK--ISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL 202
             L L+ N L G +        +  L  L L  N      PN F+    +  L +  NK+
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 203 ----AGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLD 250
                  F      +  L  L+L  N IS  +       L SL  LNL+ N  +
Sbjct: 91  KEISNKMF----LGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 139 HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPN-WFDSLPSLTFLS 196
            RL  L  L+L  N L   + P        +Q L L +N     I N  F  L  L  L+
Sbjct: 51  GRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLN 108

Query: 197 MRNNKLAGPFPSSIQRISTLSDLDLSKN 224
           + +N+++   P S + +++L+ L+L+ N
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 25/134 (18%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
                  R L L    I   + +    L   + +D S N +          + +L+TL++
Sbjct: 15  YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 71

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDL 233
           ++N           +LP LT L + NN            +  L DLD            L
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNS-----------LVELGDLD-----------PL 109

Query: 234 SSLGSLNVLNLSDN 247
           +SL SL  L +  N
Sbjct: 110 ASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 147 LDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPF 206
           + L++  +  +   + +  V+ + L L        I N   +L     +   +N++    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---- 54

Query: 207 PSSIQRIST---LSDLDLSKNAISGSLPDL-SSLGSLNVLNLSDNKLDS-----NLPKLP 257
              +        L  L ++ N I      L  +L  L  L L++N L        L  L 
Sbjct: 55  -RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 258 RGLVMAFLSNNSFSGEIPKQY-----GQLNQLQQLD 288
             L    +  N  + +  K Y      ++ Q++ LD
Sbjct: 114 S-LTYLCILRNPVTNK--KHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSGEIPK 276
           + L+   I       ++      L+L   K+    NL            S+N    EI K
Sbjct: 2   VKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN----EIRK 56

Query: 277 QYG--QLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS 319
             G   L +L+ L ++ N +  +      +LP++++L L +N   
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 50/216 (23%)

Query: 467 LPACRS---FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLP------- 516
           +  C              T        +GEG +G++++    + T VAI+ +        
Sbjct: 2   MGECSQKGPVPFSHCL-PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLV 59

Query: 517 -SSKKYTVRNLKLRLDLLAKL---------RHPHLVCLLGHCI----------------- 549
             S + T   +   + +  +L         R    + L                      
Sbjct: 60  NGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYN 119

Query: 550 -----DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
                     D +  +++F+V EF   G       E    K+ + +   ++L  +  ++ 
Sbjct: 120 STKGSANDRPDFFKDDQLFIVLEFEFGG----IDLEQMRTKLSSLATAKSILHQLTASLA 175

Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
                    F +  +   N+LL +  + KL      
Sbjct: 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNG 209

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 28/185 (15%)

Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR 529
             F   +    +  +     +G G+YG++   R        AI+ +  +   T  N KL 
Sbjct: 25  GMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLL 84

Query: 530 --LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
             + +L  L HP+++ L     D            +LV E    G     I         
Sbjct: 85  EEVAVLKLLDHPNIMKLYDFFEDK--------RNYYLVMECYKGGELFDEIIHRM----- 131

Query: 588 NWSERLA--VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLS 640
            ++E  A  ++  V   V +LH   ++     +R +K  N+LL    +  + K+ D+GLS
Sbjct: 132 KFNEVDAAVIIKQVLSGVTYLHKHNIV-----HRDLKPENLLLESKEKDALIKIVDFGLS 186

Query: 641 IVSED 645
            V E+
Sbjct: 187 AVFEN 191

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 26/172 (15%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
              F    ++G G++ +++  +    G   A++C+  S  +   +L+  + +L K++H +
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI--G 598
           +V L                  +LV + +S G     I E        ++E+ A L+   
Sbjct: 68  IVTLEDIYEST--------THYYLVMQLVSGGELFDRILERG-----VYTEKDASLVIQQ 114

Query: 599 VAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
           V  AV++LH  G++     +R +K  N+L     E+    ++D+GLS + ++
Sbjct: 115 VLSAVKYLHENGIV-----HRDLKPENLLYLTPEENSKIMITDFGLSKMEQN 161

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 38/165 (23%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCI 549
           ++G GS+G +++ +L     VAI+ +   K++  R L+    ++  ++HP++V L     
Sbjct: 47  VIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQ----IMRIVKHPNVVDLK-AFF 101

Query: 550 --DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA------- 600
             +G  +D+     + LV E++            T  +      +L   + +        
Sbjct: 102 YSNGDKKDE---VFLNLVLEYV----------PETVYRASRHYAKLKQTMPMLLIKLYMY 148

Query: 601 ---KAVQFLHT-GVIPGFFNNR-VKTNNILLNEHR-IAKLSDYGL 639
              +++ ++H+ G+      +R +K  N+LL+    + KL D+G 
Sbjct: 149 QLLRSLAYIHSIGIC-----HRDIKPQNLLLDPPSGVLKLIDFGS 188

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 35/175 (20%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR 537
           +    ++  + ++G GS+G +Y+ +L ++G  VAI+ +   K++  R L+    ++ KL 
Sbjct: 50  RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQ----IMRKLD 105

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           H ++V L  +     G     V  + LV +++            T  +V     R    +
Sbjct: 106 HCNIVRLR-YFFYSSGEKKDEV-YLNLVLDYV----------PETVYRVARHYSRAKQTL 153

Query: 598 G----------VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHR-IAKLSDYGL 639
                      + +++ ++H+ G+      +R +K  N+LL+    + KL D+G 
Sbjct: 154 PVIYVKLYMYQLFRSLAYIHSFGIC-----HRDIKPQNLLLDPDTAVLKLCDFGS 203

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
            +++D+   +G G++G +++      G + A + + +  +     ++  +  ++ LRHP 
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSERLAVLIG- 598
           LV L     D         N++ ++YEFMS G  F     E+        SE  AV    
Sbjct: 216 LVNLHDAFEDD--------NEMVMIYEFMSGGELFEKVADEHN-----KMSEDEAVEYMR 262

Query: 599 -VAKAVQFLHTGVIPGFFNNRV-----KTNNILL---NEHRIAKLSDYGLS 640
            V K +  +H         N       K  NI+      + + KL D+GL+
Sbjct: 263 QVCKGLCHMH--------ENNYVHLDLKPENIMFTTKRSNEL-KLIDFGLT 304

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 88/636 (13%), Positives = 169/636 (26%), Gaps = 216/636 (33%)

Query: 52  NHGADFCYISSSTQVNITCQD-------NFITEL--KIIGDKPSNVGNFDGFASANASLS 102
           +H  DF     + +     +D        F+     K + D P ++      +       
Sbjct: 4   HHHMDF----ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LSKEE---- 50

Query: 103 ENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKI 162
               ID  + +   ++    L         S  +++ + +  E L ++  FL        
Sbjct: 51  ----IDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFL-------- 94

Query: 163 STMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAG--PF-PSSIQRISTLSDL 219
             M  ++T            P    S+ +  ++  R+        F   ++ R+     L
Sbjct: 95  --MSPIKTEQRQ--------P----SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 220 DLSKNAISGSLPDLSS---------LGS----LNVLNLSDNKLDSNLPKLPRGLVMAFLS 266
              + A    L +L           LGS    + +      K+   +             
Sbjct: 141 ---RQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------------ 181

Query: 267 NNSF---SGEIPKQYGQLNQLQ----QLDMSFNALRGMPPPAIFSLPNISD-LN--LASN 316
              F             L  LQ    Q+D ++ +           + +I   L   L S 
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 317 KFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVK-FRGNC--L----SSN 369
            +   L         LV                L N  + +    F  +C  L       
Sbjct: 242 PYENCL---------LV----------------LLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 370 VQNQHPESYCFEVRTERNQAG-----SKNV-GKLVGIIVGVLVIMVLLAFGFLVVCRRYC 423
           V +    +    +  + +         K++  K +      L                  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------------------ 318

Query: 424 PRCTSEQHLLH-----KSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEEL 478
           PR     +        +S++D  AT        N ++V        + L      +L  L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLAT------WDNWKHV------NCDKLTTIIESSLNVL 366

Query: 479 K--EATNNFDMSAIMGEGS------YGKLYKGRLENGT-SVAIRCLPSS------KKYTV 523
           +  E    FD  ++    +         ++   +++    V  +    S      K+ T+
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 524 RNLKLRLDLLAKLR-----HPHLV----CLLGHCIDGGGR---DDY-------------- 557
               + L+L  KL      H  +V           D       D Y              
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 558 -----AVNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
                    VFL + F+         + N  G +LN
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 67/418 (16%), Positives = 109/418 (26%), Gaps = 155/418 (37%)

Query: 435 KSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTL-------------EELKEA 481
           K VQD         +L+    +              R F               EE+   
Sbjct: 36  KDVQD-----MPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 482 TNNFDMSAIMGE--------GSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDL- 532
              F MS I  E          Y +  + RL N   V         KY V  L+  L L 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVF-------AKYNVSRLQPYLKLR 141

Query: 533 --LAKLRHPHLVCLLGHCIDGG-GR--------DDYAV-----NKVF------------- 563
             L +LR    V + G     G G+          Y V      K+F             
Sbjct: 142 QALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 564 ------LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFL-------HTGV 610
                 L+Y+   N   R+  S N   ++ +    L  L+        L       +   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 611 IPGFFNNRVKT------------------NNILLNEHRIAKLSDYGLSIVS-------ED 645
               FN   K                    +I L+ H +    D   S++        +D
Sbjct: 259 WNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 646 ------------INSVGGK-QEDPNSWEMTK-LEDDVFSFGFMLLESVAGPSVAARKGQF 691
                       ++ +    ++   +W+  K +  D                   +    
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-------------------KLTTI 358

Query: 692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSI---VISIANKCICSESWSRPSFEDI 746
           ++  L+ L   E R+      V       S  I   ++S+         W      D+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFP----PSAHIPTILLSLI--------WFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 84/569 (14%), Positives = 151/569 (26%), Gaps = 190/569 (33%)

Query: 32  QVLLQLRKHLEYPKQL--EIWIN-HGADFCYISSSTQVNITCQDNFITELKIIGDKPSNV 88
           Q  L+LR+ L    +L     +   G        +      C        K+       +
Sbjct: 135 QPYLKLRQAL---LELRPAKNVLIDGVLGS--GKTWVALDVCLSY-----KVQCKMDFKI 184

Query: 89  GNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRL-YSLEYL 147
                F     +L    S ++ +  L +L      +      W S  D    +   +  +
Sbjct: 185 -----FW---LNLKNCNSPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKLRIHSI 230

Query: 148 DLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFP 207
                 L  S P +      L  L+L +   N    N F+ L     L+ R  ++     
Sbjct: 231 QAELRRLLKSKPYENC----L--LVLLN-VQNAKAWNAFN-LSCKILLTTRFKQVT---- 278

Query: 208 SSIQRISTLSDLDLSKNAISGSLPDLSSLGSL-NVLNLSDNKLDSNLPK-----LPRGLV 261
                +S  +   +S +  S +L        L   L+         LP+      PR L 
Sbjct: 279 ---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRRLS 331

Query: 262 M--AFLSNNSFSGEIPKQYGQLN--QLQQ-LDMSFNALRGMPPP---------AIFSLPN 307
           +    + +          +  +N  +L   ++ S N L    P          ++F    
Sbjct: 332 IIAESIRDGL---ATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVF---- 381

Query: 308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVV-----KFR 362
                          P + +         I    L     S +  +  K  V     K  
Sbjct: 382 ---------------PPSAH---------IPTILL-----SLIWFDVIKSDVMVVVNKLH 412

Query: 363 GNCLSSNVQNQHPESYC------FEVRTERNQAGSKNVGKLVGIIVGVLVIMVLLAFGFL 416
              L   V+ Q  ES         E++ +     + +   +V              +   
Sbjct: 413 KYSL---VEKQPKESTISIPSIYLELKVKLENEYALH-RSIVD------------HYNIP 456

Query: 417 VVCRRYCPRCTSE--------QHL---LHKSVQDNSATGFSSEVLTNARYVSEAAKLGSE 465
              + +                H+   L         T F   V  + R++    K+  +
Sbjct: 457 ---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLE--QKIRHD 510

Query: 466 GLPACRSF----TLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY 521
                 S     TL++L                   K YK  +            +  KY
Sbjct: 511 STAWNASGSILNTLQQL-------------------KFYKPYI----------CDNDPKY 541

Query: 522 TVRNLKLRLDLLAK-----LRHPHLVCLL 545
             R +   LD L K     +   +   LL
Sbjct: 542 E-RLVNAILDFLPKIEENLICSKYT-DLL 568

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 30/182 (16%)

Query: 470 CRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRN 525
            +   LE      N F    ++G+G +G++   ++   G   A + L      K+     
Sbjct: 171 LQWKWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAM 230

Query: 526 LKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENT 582
                 +L K+    +V L            YA    + + LV   M+ G+ + HI    
Sbjct: 231 ALNEKQILEKVNSRFVVSLA-----------YAYETKDALCLVLTLMNGGDLKFHIYHMG 279

Query: 583 PGKVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYG 638
                 + E  AV     +   ++ LH   ++      R +K  NILL++H   ++SD G
Sbjct: 280 QAG---FPEARAVFYAAEICCGLEDLHRERIV-----YRDLKPENILLDDHGHIRISDLG 331

Query: 639 LS 640
           L+
Sbjct: 332 LA 333

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 29/208 (13%), Positives = 72/208 (34%), Gaps = 38/208 (18%)

Query: 484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLV 542
           +F    ++G G+ G +    + +   VA++ +              + LL +   HP+++
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADR---EVQLLRESDEHPNVI 81

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
                  D            ++  E  +    + ++ +          E + +L      
Sbjct: 82  RYFCTEKDR--------QFQYIAIELCA-ATLQEYVEQ--KDFAHLGLEPITLLQQTTSG 130

Query: 603 VQFLHT-GVIPGFFNNR-VKTNNILL-----NEHRIAKLSDYGLSIVSEDINSVGGKQED 655
           +  LH+  ++     +R +K +NIL+     +    A +SD+GL            K+  
Sbjct: 131 LAHLHSLNIV-----HRDLKPHNILISMPNAHGKIKAMISDFGLC-----------KKLA 174

Query: 656 PNSWEMTKLEDDVFSFGFMLLESVAGPS 683
                 ++      + G++  E ++   
Sbjct: 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDC 202

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 32/184 (17%)

Query: 470 CRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKY-----TV 523
            +   LE      + F    ++G G +G+++  ++   G   A + L  +KK        
Sbjct: 172 LQWKWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKL--NKKRLKKRKGY 229

Query: 524 RNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISE 580
           +   +   +LAK+    +V L            YA      + LV   M+ G+ R HI  
Sbjct: 230 QGAMVEKKILAKVHSRFIVSLA-----------YAFETKTDLCLVMTIMNGGDIRYHIY- 277

Query: 581 NTPGKVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSD 636
           N       + E  A+     +   ++ LH   +I      R +K  N+LL++    ++SD
Sbjct: 278 NVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNII-----YRDLKPENVLLDDDGNVRISD 332

Query: 637 YGLS 640
            GL+
Sbjct: 333 LGLA 336

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 41/169 (24%)

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           A L HP +V +     D G  +  A    ++V E++     R  +    P   +     +
Sbjct: 67  AALNHPAIVAVY----DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAI 119

Query: 594 AVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINS--- 648
            V+    +A+ F H  G+I     +R VK  NI+++     K+ D+G++    D  +   
Sbjct: 120 EVIADACQALNFSHQNGII-----HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVT 174

Query: 649 -----VG-----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
                +G           G   D  S        DV+S G +L E + G
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARS--------DVYSLGCVLYEVLTG 215

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR 537
           ++  + F +  + G+G++G +  G+    G SVAI+ +    ++  R L++ +  LA L 
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQI-MQDLAVLH 77

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFM 569
           HP++V L        G  D     + +V E++
Sbjct: 78  HPNIVQLQ-SYFYTLGERDRRDIYLNVVMEYV 108

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 37/172 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN-----LKLRLDLLAKL 536
           N F+   ++G+G++GK+   +    G   A++ L   K+  V             +L   
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKIL--KKEVIVAKDEVAHTLTENRVLQNS 205

Query: 537 RHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           RHP L  L            Y+    +++  V E+ + G    H+S     +   +SE  
Sbjct: 206 RHPFLTALK-----------YSFQTHDRLCFVMEYANGGELFFHLS-----RERVFSEDR 249

Query: 594 AVLIG--VAKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           A   G  +  A+ +LH+   V+      R +K  N++L++    K++D+GL 
Sbjct: 250 ARFYGAEIVSALDYLHSEKNVV-----YRDLKLENLMLDKDGHIKITDFGLC 296

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 52/174 (29%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT------VRNLKLRLDLLAKLRHPHLVCL 544
           G G++G     R       VA++ +             + N +        LRHP++V  
Sbjct: 29  GSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRS-------LRHPNIVRF 81

Query: 545 LGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV----- 595
                         V      + ++ E+ S G     I     G+    SE  A      
Sbjct: 82  ------------KEVILTPTHLAIIMEYASGGELYERICNA--GRF---SEDEARFFFQQ 124

Query: 596 LIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIA--KLSDYGLSIVSED 645
           L+     V + H+  +      +R +K  N LL+       K+ D+G S  S  
Sbjct: 125 LLS---GVSYCHSMQIC-----HRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 36/171 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKY-----TVRNLKLRLDLLAKL 536
           ++F++   +G+GS+GK+   +  +     A++ +  +K+       VRN+   L ++  L
Sbjct: 15  DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYM--NKQKCVERNEVRNVFKELQIMQGL 72

Query: 537 RHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            HP LV L            Y+      +F+V + +  G+ R H+      + +++ E  
Sbjct: 73  EHPFLVNL-----------WYSFQDEEDMFMVVDLLLGGDLRYHLQ-----QNVHFKEET 116

Query: 594 AVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             L    +  A+ +L    +I     +R +K +NILL+EH    ++D+ ++
Sbjct: 117 VKLFICELVMALDYLQNQRII-----HRDMKPDNILLDEHGHVHITDFNIA 162

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 50/162 (30%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL 216
           SVP  I +      L L+ N   +     FD L  LT LS+  N++              
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------- 65

Query: 217 SDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI 274
                       SLPD     L  L +L L +NKL S    LP G    F          
Sbjct: 66  ------------SLPDGVFDKLTKLTILYLHENKLQS----LPNG---VF---------- 96

Query: 275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN 316
                +L QL++L +  N L+ +P      L ++  + L +N
Sbjct: 97  ----DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 133 SLPDKI-HRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPN-WFDSL 189
           SLP  +  +L  L  L LS N +  S+P  +   + KL  L L +N    ++PN  FD L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKL 99

Query: 190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN 224
             L  L++  N+L         R+++L  + L  N
Sbjct: 100 TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 29/185 (15%)

Query: 472 SFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK---KYTVRNLK 527
            F        ++ +    ++G+GS+G++   +    G   A++ +   +   K    +L 
Sbjct: 15  MFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLL 74

Query: 528 LRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
             + LL +L HP+++ L     D            +LV E  + G     I         
Sbjct: 75  REVQLLKQLDHPNIMKLYEFFEDK--------GYFYLVGEVYTGGELFDEIISRK----- 121

Query: 588 NWSERLA--VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLS 640
            +SE  A  ++  V   + ++H   ++     +R +K  N+LL   ++    ++ D+GLS
Sbjct: 122 RFSEVDAARIIRQVLSGITYMHKNKIV-----HRDLKPENLLLESKSKDANIRIIDFGLS 176

Query: 641 IVSED 645
              E 
Sbjct: 177 THFEA 181

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 35/183 (19%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--------KYTVRNLKLR 529
           K   + + MS  +G G+ G++      +    VAIR +   K             N++  
Sbjct: 131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETE 190

Query: 530 LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNW 589
           +++L KL HP ++ +         ++ +     ++V E M  G     +  N   ++   
Sbjct: 191 IEILKKLNHPCIIKI---------KNFFDAEDYYIVLELMEGGELFDKVVGN--KRL--- 236

Query: 590 SERLAVLI--GVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIV 642
            E    L    +  AVQ+LH  G+I     +R +K  N+LL    E  + K++D+G S +
Sbjct: 237 KEATCKLYFYQMLLAVQYLHENGII-----HRDLKPENVLLSSQEEDCLIKITDFGHSKI 291

Query: 643 SED 645
             +
Sbjct: 292 LGE 294

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 30/167 (17%), Positives = 67/167 (40%), Gaps = 43/167 (25%)

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           ++L H ++V ++    D    DD      +LV E++       +I  + P   L+    +
Sbjct: 66  SQLSHQNIVSMI----DVDEEDDCY----YLVMEYIEGPTLSEYIESHGP---LSVDTAI 114

Query: 594 AVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSED------ 645
                +   ++  H   ++     +R +K  NIL++ ++  K+ D+G++    +      
Sbjct: 115 NFTNQILDGIKHAHDMRIV-----HRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQT 169

Query: 646 ---INSVG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
              + +V         G+  D  +        D++S G +L E + G
Sbjct: 170 NHVLGTVQYFSPEQAKGEATDECT--------DIYSIGIVLYEMLVG 208

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 28/174 (16%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRH 538
              +++  ++G+GS+G++ K +        A++ +  +         +   ++LL KL H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VL 596
           P+++ L     D         +  ++V E  + G     I +        +SE  A  ++
Sbjct: 81  PNIMKLFEILEDS--------SSFYIVGELYTGGELFDEIIKRK-----RFSEHDAARII 127

Query: 597 IGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
             V   + ++H   ++     +R +K  NILL    +    K+ D+GLS   + 
Sbjct: 128 KQVFSGITYMHKHNIV-----HRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 26/168 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LD-LLAKLRHP 539
            +      +G G+YG + K     +G  +A++ + S+     +   L  LD ++     P
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFM--SNGNFRTHISENTPGKVLNWSERL--AV 595
           ++V   G     G          ++  E M  S   F  ++       +    E +   +
Sbjct: 82  YIVQFYGALFREG--------DCWICMELMSTSFDKFYKYVYSVLDDVI---PEEILGKI 130

Query: 596 LIGVAKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            +   KA+  L     +I     +R +K +NILL+     KL D+G+S
Sbjct: 131 TLATVKALNHLKENLKII-----HRDIKPSNILLDRSGNIKLCDFGIS 173

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 35/183 (19%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--------KYTVRNLKLR 529
           K   + + MS  +G G+ G++      +    VAI+ +   K             N++  
Sbjct: 6   KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETE 65

Query: 530 LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNW 589
           +++L KL HP ++ +         ++ +     ++V E M  G     +  N        
Sbjct: 66  IEILKKLNHPCIIKI---------KNFFDAEDYYIVLELMEGGELFDKVVGNK-----RL 111

Query: 590 SERLAVLI--GVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIV 642
            E    L    +  AVQ+LH  G+I     +R +K  N+LL    E  + K++D+G S +
Sbjct: 112 KEATCKLYFYQMLLAVQYLHENGII-----HRDLKPENVLLSSQEEDCLIKITDFGHSKI 166

Query: 643 SED 645
             +
Sbjct: 167 LGE 169

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 33/179 (18%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR--- 537
             N++   I+G G    + +          A++ +  +   +    +++    A L+   
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 538 -------HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
                  HP+++ L                  FLV++ M  G    +++E         S
Sbjct: 76  ILRKVSGHPNIIQLKDTYETN--------TFFFLVFDLMKKGELFDYLTEKV-----TLS 122

Query: 591 ERLA--VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSED 645
           E+    ++  + + +  LH   ++     +R +K  NILL++    KL+D+G S   + 
Sbjct: 123 EKETRKIMRALLEVICALHKLNIV-----HRDLKPENILLDDDMNIKLTDFGFSCQLDP 176

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 45/179 (25%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRN------LKLRLDLLAKL 536
            + +  ++G+G +G ++ G  L +   VAI+ +P ++              L + LL K+
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV 91

Query: 537 R----HPHLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGN--FRTHISENTPGKV 586
                HP ++ L                       LV E        F  +I+E   G +
Sbjct: 92  GAGGGHPGVIRL------------LDWFETQEGFMLVLERPLPAQDLF-DYITEK--GPL 136

Query: 587 LNWSERLAVLI--GVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHR-IAKLSDYGLS 640
               E  +      V  A+Q  H+ GV+     +R +K  NIL++  R  AKL D+G  
Sbjct: 137 ---GEGPSRCFFGQVVAAIQHCHSRGVV-----HRDIKDENILIDLRRGCAKLIDFGSG 187

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 29/158 (18%)

Query: 492 GEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPHLVCLLGHCI 549
           G G+ G ++K     +G  +A + +    K  +RN  +R L +L +   P++V   G   
Sbjct: 42  GAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY 101

Query: 550 DGGGRDDYAVNKVFLVYEFMSNG------NFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
             G        ++ +  E M  G           I E   GKV          I V K +
Sbjct: 102 SDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILGKVS---------IAVIKGL 144

Query: 604 QFLHTGVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            +L          +R VK +NIL+N     KL D+G+S
Sbjct: 145 TYLREK---HKIMHRDVKPSNILVNSRGEIKLCDFGVS 179

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 39/174 (22%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLR--------LDLL 533
           N+F +  I+G G +G++Y  R  + G   A++CL   KK                 L L+
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCL--DKKRIKMKQGETLALNERIMLSLV 246

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
           +    P +VC+            YA    +K+  + + M+ G+   H+S     +   +S
Sbjct: 247 STGDCPFIVCM-----------SYAFHTPDKLSFILDLMNGGDLHYHLS-----QHGVFS 290

Query: 591 ERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           E         +   ++ +H   V+      R +K  NILL+EH   ++SD GL+
Sbjct: 291 EADMRFYAAEIILGLEHMHNRFVV-----YRDLKPANILLDEHGHVRISDLGLA 339

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 30/178 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLR-----LDLLAKL 536
            +F    I+GEGS+  +   R        AI+ L   K++ ++  K+       D++++L
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKIL--EKRHIIKENKVPYVTRERDVMSRL 87

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
            HP  V L     D          K++    +  NG    +I      K+ ++ E     
Sbjct: 88  DHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIR-----KIGSFDETCTRF 134

Query: 597 IG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
               +  A+++LH  G+I     +R +K  NILLNE    +++D+G + V    +   
Sbjct: 135 YTAEIVSALEYLHGKGII-----HRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 187

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 36/171 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN-----LKLRLDLLAKL 536
           N+FD   ++G+G++GK+   R    G   A++ L   K+  +             +L   
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKIL--RKEVIIAKDEVAHTVTESRVLQNT 62

Query: 537 RHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
           RHP L  L            YA    +++  V E+ + G    H+S     +   ++E  
Sbjct: 63  RHPFLTALK-----------YAFQTHDRLCFVMEYANGGELFFHLS-----RERVFTEER 106

Query: 594 AVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           A   G  +  A+++LH+  V+      R +K  N++L++    K++D+GL 
Sbjct: 107 ARFYGAEIVSALEYLHSRDVV-----YRDIKLENLMLDKDGHIKITDFGLC 152

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 28/174 (16%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRH 538
              +++  ++G+GS+G++ K +        A++ +  +         +   ++LL KL H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VL 596
           P+++ L     D         +  ++V E  + G     I +        +SE  A  ++
Sbjct: 81  PNIMKLFEILEDS--------SSFYIVGELYTGGELFDEIIKRK-----RFSEHDAARII 127

Query: 597 IGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
             V   + ++H   ++     +R +K  NILL    +    K+ D+GLS   + 
Sbjct: 128 KQVFSGITYMHKHNIV-----HRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 29/173 (16%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHP 539
            + F     +G G++G ++      +G    I+ +   + +  +  ++  +++L  L HP
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI-- 597
           +++ +     D         + +++V E    G     I      +    SE     +  
Sbjct: 81  NIIKIFEVFEDY--------HNMYIVMETCEGGELLERIVSAQA-RGKALSEGYVAELMK 131

Query: 598 GVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
            +  A+ + H+  V+     ++ +K  NIL    + H   K+ D+GL+ + + 
Sbjct: 132 QMMNALAYFHSQHVV-----HKDLKPENILFQDTSPHSPIKIIDFGLAELFKS 179

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 51/169 (30%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSK----------KYTVRNLKLRLDLLAKLRHPH 540
           GEGS+GK+      +    VA++ +              +  +  LKL       LRHPH
Sbjct: 18  GEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKL-------LRHPH 70

Query: 541 LVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV- 595
           ++ L            Y V      + +V E+ + G    +I E    ++   +E     
Sbjct: 71  IIKL------------YDVITTPTDIVMVIEY-AGGELFDYIVEK--KRM---TEDEGRR 112

Query: 596 ----LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
               +I    A+++ H        +  +K  N+LL+++   K++D+GLS
Sbjct: 113 FFQQIIC---AIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLS 155

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 116 RLTSLRVLSLVSLGI-WGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
             + ++ L L +     G L         LE+L   +  L  +    +  + KL+ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELS 72

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLS 234
           DN  +  +    +  P+LT L++  NK           I  LS ++            L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK-----------IKDLSTIE-----------PLK 110

Query: 235 SLGSLNVLNLSDN 247
            L +L  L+L + 
Sbjct: 111 KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 28/129 (21%)

Query: 218 DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSGEIP 275
            LD S++              L  L+  +  L S  NLPKL +                 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK----------------- 65

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG-SLPKNLNCGGKLVF 334
                   L++L++S N + G         PN++ LNL+ NK    S  + L     L  
Sbjct: 66  --------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 335 FDISNNKLT 343
            D+ N ++T
Sbjct: 118 LDLFNCEVT 126

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 28/172 (16%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
           ++ F++ + +G G+   +Y+ +        A++ L   K    + ++  + +L +L HP+
Sbjct: 52  SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVL--KKTVDKKIVRTEIGVLLRLSHPN 109

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI--G 598
           ++ L                ++ LV E ++ G     I E        +SER A      
Sbjct: 110 IIKLKEIFETP--------TEISLVLELVTGGELFDRIVEKG-----YYSERDAADAVKQ 156

Query: 599 VAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
           + +AV +LH  G++     +R +K  N+L          K++D+GLS + E 
Sbjct: 157 ILEAVAYLHENGIV-----HRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 26/172 (15%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
              + +   +G GS+G++            A + +P      V   K  ++++  L HP+
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN 67

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VLIG 598
           ++ L     D           ++LV E  + G     +          + E  A  ++  
Sbjct: 68  IIRLYETFEDN--------TDIYLVMELCTGGELFERVVHKR-----VFRESDAARIMKD 114

Query: 599 VAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
           V  AV + H   V      +R +K  N L    +     KL D+GL+   + 
Sbjct: 115 VLSAVAYCHKLNVA-----HRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP 161

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 56/189 (29%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD------------------- 531
           G+GSYG +       + T  A++ L   K         R                     
Sbjct: 22  GKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIE 81

Query: 532 -------LLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTP 583
                  +L KL HP++V L    +     DD   + +++V+E ++ G      +    P
Sbjct: 82  QVYQEIAILKKLDHPNVVKL--VEV----LDDPNEDHLYMVFELVNQGPVM--EVPTLKP 133

Query: 584 GKVLNWSERLAV-----LIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSD 636
                 SE  A      LI   K +++LH   +I     +R +K +N+L+ E    K++D
Sbjct: 134 -----LSEDQARFYFQDLI---KGIEYLHYQKII-----HRDIKPSNLLVGEDGHIKIAD 180

Query: 637 YGLSIVSED 645
           +G+S   + 
Sbjct: 181 FGVSNEFKG 189

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 39/199 (19%), Positives = 84/199 (42%), Gaps = 28/199 (14%)

Query: 457 SEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL 515
             A+  G + +     F +    + ++N+D+   +G+G++  + +      G   A + +
Sbjct: 3   HMASMTGGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKII 62

Query: 516 PSSKKYTVRNLKLR--LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
            + K       KL     +  KL+HP++V L     +         +  +LV++ ++ G 
Sbjct: 63  NTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE--------SFHYLVFDLVTGGE 114

Query: 574 FRTHISENTPGKVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILL--- 626
               I          +SE  A      + +++ + H+ G++     +R +K  N+LL   
Sbjct: 115 LFEDIVARE-----FYSEADASHCIQQILESIAYCHSNGIV-----HRNLKPENLLLASK 164

Query: 627 NEHRIAKLSDYGLSIVSED 645
            +    KL+D+GL+I   D
Sbjct: 165 AKGAAVKLADFGLAIEVND 183

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 19/164 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LD-LLAKLRHP 539
           ++ +    +G G+YG + K R + +G  +A++ + ++     +   L  LD  +  +  P
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
             V   G     G         V++  E M     + +      G+ +       + + +
Sbjct: 67  FTVTFYGALFREG--------DVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSI 118

Query: 600 AKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            KA++ LH+   VI     +R VK +N+L+N     K+ D+G+S
Sbjct: 119 VKALEHLHSKLSVI-----HRDVKPSNVLINALGQVKMCDFGIS 157

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 39/173 (22%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYT------VRNLKL-RLDLLA 534
            +F+   ++G+GS+GK+            A++ L   KK        V    + +  L  
Sbjct: 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKIL---KKDVVIQDDDVECTMVEKRVLAL 397

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
             + P L  L                 +++++ V E+++ G+   HI      +V  + E
Sbjct: 398 PGKPPFLTQLH-----------SCFQTMDRLYFVMEYVNGGDLMYHIQ-----QVGRFKE 441

Query: 592 RLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             AV     +A  + FL + G+I      R +K +N++L+     K++D+G+ 
Sbjct: 442 PHAVFYAAEIAIGLFFLQSKGII-----YRDLKLDNVMLDSEGHIKIADFGMC 489

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 34/170 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKL-RHP 539
           N+ +    MG G+ G+++K R  + G  +A++ +  S         L  LD++ K    P
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG------NFRTHISENTPGKVLNWSERL 593
           ++V   G  I            VF+  E M           +  I E   GK+       
Sbjct: 85  YIVQCFGTFITNT--------DVFIAMELMGTCAEKLKKRMQGPIPERILGKMT------ 130

Query: 594 AVLIGVAKAVQFLHT--GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
              + + KA+ +L    GVI     +R VK +NILL+E    KL D+G+S
Sbjct: 131 ---VAIVKALYYLKEKHGVI-----HRDVKPSNILLDERGQIKLCDFGIS 172

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/268 (16%), Positives = 86/268 (32%), Gaps = 78/268 (29%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLRHPH 540
            +F+    MG G +G +++ +   +  + AI+ +    +   R   +R +  LAKL HP 
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 541 LV-------------------------------------------------CLLGHCIDG 551
           +V                                                         G
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG 125

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GV 610
             +       +++  +     N +  ++     +       L + I +A+AV+FLH+ G+
Sbjct: 126 QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGL 185

Query: 611 IPGFFNNR-VKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSWEMTKL---- 664
           +     +R +K +NI      + K+ D+GL   + +D          P     T      
Sbjct: 186 M-----HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240

Query: 665 ---------------EDDVFSFGFMLLE 677
                          + D+FS G +L E
Sbjct: 241 LYMSPEQIHGNNYSHKVDIFSLGLILFE 268

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 43/182 (23%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRN------LKLRLDLLAKL 536
            + +  ++G G +G +Y G  + +   VAI+ +   +            + + + LL K+
Sbjct: 44  QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 103

Query: 537 RH--PHLVCLLGHCIDGGGRDDYAV----NKVFLVYEFMSNGN--FRTHISENTPGKVLN 588
                 ++ L                   +   L+ E        F   I+E   G +  
Sbjct: 104 SSGFSGVIRL------------LDWFERPDSFVLILERPEPVQDLF-DFITER--GAL-- 146

Query: 589 WSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRI-AKLSDYGLSIVS 643
             E LA      V +AV+  H  GV+     +R +K  NIL++ +R   KL D+G   + 
Sbjct: 147 -QEELARSFFWQVLEAVRHCHNCGVL-----HRDIKDENILIDLNRGELKLIDFGSGALL 200

Query: 644 ED 645
           +D
Sbjct: 201 KD 202

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR 537
           KE    + ++  +G G +G +++     +  +   + +          +K  + +L   R
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIAR 59

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           H +++ L                ++ +++EF+S  +    I+          +ER  V  
Sbjct: 60  HRNILHLHESFESM--------EELVMIFEFISGLDIFERINT----SAFELNEREIVSY 107

Query: 598 G--VAKAVQFLHTGVIPGFFNNRV----KTNNILL---NEHRIAKLSDYGLSI 641
              V +A+QFLH        +N      +  NI+        I K+ ++G + 
Sbjct: 108 VHQVCEALQFLH-------SHNIGHFDIRPENIIYQTRRSSTI-KIIEFGQAR 152

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 32/181 (17%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRL------- 530
           KE    +D   ++G G    + +      G   A++ +  + +         +       
Sbjct: 90  KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRE 149

Query: 531 -DLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
             +L ++  HPH++ L+              + +FLV++ M  G    +++E        
Sbjct: 150 THILRQVAGHPHIITLIDSYESS--------SFMFLVFDLMRKGELFDYLTEKV-----A 196

Query: 589 WSERLA--VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSE 644
            SE+    ++  + +AV FLH   ++     +R +K  NILL+++   +LSD+G S   E
Sbjct: 197 LSEKETRSIMRSLLEAVSFLHANNIV-----HRDLKPENILLDDNMQIRLSDFGFSCHLE 251

Query: 645 D 645
            
Sbjct: 252 P 252

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 36/174 (20%), Positives = 77/174 (44%), Gaps = 28/174 (16%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRH 538
           ++N+D+   +G+G++  + +      G   A + + + K       KL     +  KL+H
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA--VL 596
           P++V L     +         +  +LV++ ++ G     I          +SE  A   +
Sbjct: 65  PNIVRLHDSIQEE--------SFHYLVFDLVTGGELFEDIVARE-----FYSEADASHCI 111

Query: 597 IGVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSIVSED 645
             + +++ + H+ G++     +R +K  N+LL    +    KL+D+GL+I   D
Sbjct: 112 QQILESIAYCHSNGIV-----HRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 40/175 (22%)

Query: 483 NNFDMSAIMGEGSYGK--LYKGRLENGTSV--AIRCLPSSKKYTVRNLKLRL------DL 532
             F++  ++G+G YGK    +      T    A++ L   K   VRN K         ++
Sbjct: 17  ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVL--KKAMIVRNAKDTAHTKAERNI 74

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNW 589
           L +++HP +V L            YA     K++L+ E++S G     +      +   +
Sbjct: 75  LEEVKHPFIVDL--I---------YAFQTGGKLYLILEYLSGGELFMQLE-----REGIF 118

Query: 590 SERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            E  A      ++ A+  LH  G+I      R +K  NI+LN     KL+D+GL 
Sbjct: 119 MEDTACFYLAEISMALGHLHQKGII-----YRDLKPENIMLNHQGHVKLTDFGLC 168

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 39/195 (20%)

Query: 472 SFTLEELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK----------- 519
            +  ++  +   ++     +G G+YG++   +     +  AI+ +  S+           
Sbjct: 25  MYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNK 84

Query: 520 --KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH 577
             +     +   + LL  L HP+++ L     D            +LV EF   G     
Sbjct: 85  NIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDK--------KYFYLVTEFYEGGELFEQ 136

Query: 578 ISENTPGKVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHR 630
           I          + E  A  I   +   + +LH   ++     +R +K  NILL   N   
Sbjct: 137 IINRH-----KFDECDAANIMKQILSGICYLHKHNIV-----HRDIKPENILLENKNSLL 186

Query: 631 IAKLSDYGLSIVSED 645
             K+ D+GLS     
Sbjct: 187 NIKIVDFGLSSFFSK 201

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 32/170 (18%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
            + +D+   +G G++G +++      G     + + +        +K  + ++ +L HP 
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK 109

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSERLAVLI-- 597
           L+ L     D          ++ L+ EF+S G  F    +E+        SE   +    
Sbjct: 110 LINLHDAFEDK--------YEMVLILEFLSGGELFDRIAAEDY-----KMSEAEVINYMR 156

Query: 598 GVAKAVQFLHTGVIPGFFNNRV----KTNNILL---NEHRIAKLSDYGLS 640
              + ++ +H        ++ V    K  NI+        + K+ D+GL+
Sbjct: 157 QACEGLKHMH-------EHSIVHLDIKPENIMCETKKASSV-KIIDFGLA 198

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHL 541
           N      I+G GS G +       G  VA++ +              + LL +   HP++
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALM---EIKLLTESDDHPNV 71

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN----TPGKVLNWSERLAVLI 597
           +                   +++  E   N N +  +          K+      +++L 
Sbjct: 72  IRYYCSETTD--------RFLYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLR 122

Query: 598 GVAKAVQFLHTGVIPGFFNNRV-----KTNNILL-------------NEHRIAKLSDYGL 639
            +A  V  LH        + ++     K  NIL+              E+    +SD+GL
Sbjct: 123 QIASGVAHLH--------SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGL 174

Query: 640 S 640
            
Sbjct: 175 C 175

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 43/167 (25%)

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            +L+ PH+V +     D G  D       ++    ++  +    +    P   L     +
Sbjct: 89  GRLQEPHVVPIH----DFGEIDGQL----YVDMRLINGVDLAAMLRRQGP---LAPPRAV 137

Query: 594 AVLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGL--SIVSEDINSV 649
           A++  +  A+   H  G       +R VK  NIL++    A L D+G+  +   E +  +
Sbjct: 138 AIVRQIGSALDAAHAAGAT-----HRDVKPENILVSADDFAYLVDFGIASATTDEKLTQL 192

Query: 650 G---------------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
           G                      +        D+++   +L E + G
Sbjct: 193 GNTVGTLYYMAPERFSESHATYRA--------DIYALTCVLYECLTG 231

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 32/196 (16%)

Query: 463 GSEGLPACRSFTLEELKEATN---NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRC---- 514
           GS G+       L+   +       +++  ++G+G +  + +    E G   A++     
Sbjct: 1   GSPGISGGGGGILDMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVA 60

Query: 515 -LPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN 573
              SS   +  +LK    +   L+HPH+V LL                +++V+EFM   +
Sbjct: 61  KFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD--------GMLYMVFEFMDGAD 112

Query: 574 -FRTHISENTPGKVLNWSERLAVLI--GVAKAVQFLHT-GVIPGFFNNR-VKTNNILL-- 626
                +     G V   SE +A      + +A+++ H   +I     +R VK + +LL  
Sbjct: 113 LCFEIVKRADAGFVY--SEAVASHYMRQILEALRYCHDNNII-----HRDVKPHCVLLAS 165

Query: 627 -NEHRIAKLSDYGLSI 641
                  KL  +G++I
Sbjct: 166 KENSAPVKLGGFGVAI 181

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 38/169 (22%)

Query: 107 IDSFVTTLARLTSLRVLSLVSLGIWGSLPDKI---HRLYSLEYLDLSSNFLFGSVPPKIS 163
           I+    TL+ L + + L+L +  I     +KI     + +L  L L  N +   +    +
Sbjct: 37  IEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLI-KKIENLDA 90

Query: 164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSK 223
               L+ L +  N    ++    + L +L  L M NNK           I+   ++D   
Sbjct: 91  VADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNK-----------ITNWGEID--- 134

Query: 224 NAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP-----RGLVMAFLSN 267
                    L++L  L  L L+ N L ++  +       R  V+  L N
Sbjct: 135 --------KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 218 DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIP 275
           +L      I      LS+L +   L LS N ++  S+L  +   L +  L  N    +I 
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN-LRILSLGRNLIK-KIE 86

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNK 317
                 + L++L +S+N +  +    I  L N+  L +++NK
Sbjct: 87  NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNK 126

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 48/229 (20%)

Query: 143 SLEYLDLSSNFL-FGSVPPKISTMVKLQTLILDDNFFNNT----IPNWFDSLPSLTFLSM 197
            ++ LD+    L        +  + + Q + LDD          I +     P+L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 198 RNNKLAGPFPSSIQRIS--------TLSDLDLSKNAIS----GSLPD-LSSLGSLNVLNL 244
           R+N+L       +  +          +  L L    ++    G L   L +L +L  L+L
Sbjct: 64  RSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 245 SDNKL-DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIF 303
           SDN L D+ L    + L    L                 +L++L + + +L       + 
Sbjct: 121 SDNLLGDAGL----QLLCEGLLDPQC-------------RLEKLQLEYCSLSAASCEPLA 163

Query: 304 SL----PNISDLNLASNKFSGSLPKNL-----NCGGKLVFFDISNNKLT 343
           S+    P+  +L +++N  + +  + L     +   +L    + +  +T
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 40/323 (12%), Positives = 90/323 (27%), Gaps = 82/323 (25%)

Query: 101 LSENFSIDSFVTTLARL-----TSLRVLSLVSLGI----WGSLPDKIHRLYSLEYLDLSS 151
           L  N   D  V  + +        ++ LSL +  +     G L   +  L +L+ L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 152 NFLFGSVPPKISTMV-----KLQTLILDDNFFNNT----IPNWFDSLPSLTFLSMRNNKL 202
           N L  +    +   +     +L+ L L+    +      + +   + P    L++ NN +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 203 ---------------------------------AGPFPSSIQRISTLSDLDLSKNAISG- 228
                                                   +   ++L +L L  N +   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 229 -----SLPDLSSLGSLNVLNLSDNKLD-------SNLPKLPRGLVMAFLSNNSFSGEIPK 276
                    L     L  L + +  +          + +    L    L+ N    E  +
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 277 QYGQL-----NQLQQLDMSFNAL--RGMPP--PAIFSLPNISDLNLASNKFS-------G 320
              +       QL+ L +   +            +     + +L +++N+          
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 321 SLPKNLNCGGKLVFFDISNNKLT 343
                      L    +++  ++
Sbjct: 363 QGLGQPGS--VLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 43/268 (16%), Positives = 77/268 (28%), Gaps = 60/268 (22%)

Query: 100 SLSEN-FSIDSFVTTLARLTSLRVLSLVSLGI----WGSLPDKIHRLYSLEYLDLSSNFL 154
            +     S   +   L  L   +V+ L   G+       +   +    +L  L+L SN L
Sbjct: 9   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68

Query: 155 FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSI 210
                  +   ++  +                     +  LS++N  L     G   S++
Sbjct: 69  GDVGVHCVLQGLQTPSC-------------------KIQKLSLQNCCLTGAGCGVLSSTL 109

Query: 211 QRISTLSDLDLSKNAISGS-LPDLSSLG-----SLNVLNLSDNKLDSNLPKLPRGLVMAF 264
           + + TL +L LS N +  + L  L          L  L L    L          L    
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVL 166

Query: 265 LSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI-----FSLPNISDLNLASNKFS 319
            +                  ++L +S N +       +      S   +  L L S   +
Sbjct: 167 RAKPD--------------FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

Query: 320 ----GSLPKNLNCGGKLVFFDISNNKLT 343
                 L   +     L    + +NKL 
Sbjct: 213 SDNCRDLCGIVASKASLRELALGSNKLG 240

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 34/187 (18%)

Query: 476 EELKEATNNF----DMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRL 530
           ++L   +  F    ++   +G GSY    +          A++ +  SK+     +++  
Sbjct: 11  QQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEI-- 68

Query: 531 DLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
            LL   +HP+++ L     DG          V++V E M  G     I          +S
Sbjct: 69  -LLRYGQHPNIITLKDVYDDG--------KYVYVVTELMKGGELLDKILRQK-----FFS 114

Query: 591 ERLAVLI--GVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHR----IAKLSDYGLSIV 642
           ER A  +   + K V++LH  GV+     +R +K +NIL  +        ++ D+G +  
Sbjct: 115 EREASAVLFTITKTVEYLHAQGVV-----HRDLKPSNILYVDESGNPESIRICDFGFAKQ 169

Query: 643 SEDINSV 649
               N +
Sbjct: 170 LRAENGL 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 25/133 (18%)

Query: 116 RLTSLRVLSLVSLGI-WGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD 174
              ++R L L +     G +        +LE+L L +  L       +  + KL+ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLS 234
           +N     +    + LP+LT L++  NK           +  +S L+            L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNK-----------LKDISTLE-----------PLK 117

Query: 235 SLGSLNVLNLSDN 247
            L  L  L+L + 
Sbjct: 118 KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 30/130 (23%)

Query: 218 DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFLSNNSFSGEIP 275
            LD  K+         +   +L  L+L +  L S  NLPKLP+                 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK----------------- 72

Query: 276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS--GSLPKNLNCGGKLV 333
                   L++L++S N + G        LPN++ LNL+ NK     +L + L     L 
Sbjct: 73  --------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLK 123

Query: 334 FFDISNNKLT 343
             D+ N ++T
Sbjct: 124 SLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 106 SIDSFVTTLARLTSLRVLSL--VSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS 163
           +        A   +L  LSL  V L    +LP    +L  L+ L+LS N +FG +     
Sbjct: 37  NDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAE 92

Query: 164 TMVKLQTLILDDNFFNN-TIPNWFDSLPSLTFLSMRNNKLA 203
            +  L  L L  N   + +       L  L  L + N ++ 
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 32/168 (19%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               + I+G G +G+++K      G  +A + + +        +K  + ++ +L H +L+
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSERLAVLI--GV 599
            L               N + LV E++  G  F   I E+      N +E   +L    +
Sbjct: 150 QLYDAFESK--------NDIVLVMEYVDGGELFDRIIDESY-----NLTELDTILFMKQI 196

Query: 600 AKAVQFLHTGVIPGFFNNRV----KTNNILL---NEHRIAKLSDYGLS 640
            + ++ +H           +    K  NIL    +  +I K+ D+GL+
Sbjct: 197 CEGIRHMHQ-------MYILHLDLKPENILCVNRDAKQI-KIIDFGLA 236

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 28/170 (16%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRH 538
           T  + +   +G+G++  + +   +  G   A   + + K     + KL     +   L+H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI- 597
           P++V L     +            +L+++ ++ G     I          +SE  A    
Sbjct: 70  PNIVRLHDSISEE--------GHHYLIFDLVTGGELFEDIVARE-----YYSEADASHCI 116

Query: 598 -GVAKAVQFLHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGLSI 641
             + +AV   H  GV+     +R +K  N+LL    +    KL+D+GL+I
Sbjct: 117 QQILEAVLHCHQMGVV-----HRNLKPENLLLASKLKGAAVKLADFGLAI 161

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 39/178 (21%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDL------LA 534
            + +D+   +G G +  + K R    G   A + +   +    R    R ++      L 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSERL 593
           ++ H +++ L     +           V L+ E +S G  F     +       + SE  
Sbjct: 71  QVLHHNVITLHDVYENR--------TDVVLILELVSGGELFDFLAQKE------SLSEEE 116

Query: 594 AVLIG--VAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIA----KLSDYGLSI 641
           A      +   V +LH                K  NI+L +  I     KL D+GL+ 
Sbjct: 117 ATSFIKQILDGVNYLH-------TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH 167

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 37/176 (21%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDL------LA 534
            ++++M   +G G +  + K R    G   A + +   +  + R    R ++      L 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           ++RHP+++ L     +           V L+ E +S G     ++E       + +E  A
Sbjct: 64  EIRHPNIITLHDIFENK--------TDVVLILELVSGGELFDFLAEKE-----SLTEDEA 110

Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIA----KLSDYGLS 640
                 +   V +LH                K  NI+L +  +     KL D+G++
Sbjct: 111 TQFLKQILDGVHYLH-------SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 39/182 (21%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDL------LA 534
            + +D+   +G G +  + K R    G   A + +   +    R    R ++      L 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN-FRTHISENTPGKVLNWSERL 593
           ++ HP+++ L     +           V L+ E +S G  F     +       + SE  
Sbjct: 71  QVLHPNIITLHDVYENR--------TDVVLILELVSGGELFDFLAQKE------SLSEEE 116

Query: 594 AVLIG--VAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIA----KLSDYGLSIVS 643
           A      +   V +LH                K  NI+L +  I     KL D+GL+   
Sbjct: 117 ATSFIKQILDGVNYLH-------TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEI 169

Query: 644 ED 645
           ED
Sbjct: 170 ED 171

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 15/117 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYT-VRNLKLRLDLLAK 535
           +   +   +G G++G++ +             +VA++ L     ++  R L   L +L  
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 81

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           +  H ++V LLG C   GG        + ++ EF   GN  T++       V   ++
Sbjct: 82  IGHHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTK 131

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 38/173 (21%)

Query: 483 NNFDMSAIMGEGSYGKLY----KGRLENGTSVAIRCLPSSKKYTVRNLKLRL----DLLA 534
           + F++  ++G+GS+GK++        +     A++ L   K       ++R     D+L 
Sbjct: 24  SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVL--KKATLKVRDRVRTKMERDILV 81

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
           ++ HP +V L  H         YA     K++L+ +F+  G+  T +S     K + ++E
Sbjct: 82  EVNHPFIVKL--H---------YAFQTEGKLYLILDFLRGGDLFTRLS-----KEVMFTE 125

Query: 592 RLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
                    +A A+  LH+ G+I      R +K  NILL+E    KL+D+GLS
Sbjct: 126 EDVKFYLAELALALDHLHSLGII-----YRDLKPENILLDEEGHIKLTDFGLS 173

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 37/172 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN------LKLRLDLLAK 535
            +F+   ++G+GS+GK+            A++ L   K   +++      +  +  L   
Sbjct: 20  TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKIL--KKDVVIQDDDVECTMVEKRVLALP 77

Query: 536 LRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
            + P L  L                 +++++ V E+++ G+   HI      +V  + E 
Sbjct: 78  GKPPFLTQLH-----------SCFQTMDRLYFVMEYVNGGDLMYHIQ-----QVGRFKEP 121

Query: 593 LAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            AV     +A  + FL + G+I      R +K +N++L+     K++D+G+ 
Sbjct: 122 HAVFYAAEIAIGLFFLQSKGII-----YRDLKLDNVMLDSEGHIKIADFGMC 168

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 60/221 (27%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT-----VRNLKLRLDL 532
            E    + +   +G+GSYG +      +     AI+ +  +K        V  +K  + L
Sbjct: 22  LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRL 81

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG-------------------- 572
           + KL HP++  L     D           + LV E    G                    
Sbjct: 82  MKKLHHPNIARLYEVYEDE--------QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMD 133

Query: 573 ---------------NFRTHISENTPGKVLNWSERLA--VLIGVAKAVQFLHT-GVIPGF 614
                               I            E+L   ++  +  A+ +LH  G+    
Sbjct: 134 VVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGIC--- 190

Query: 615 FNNR-VKTNNILLNEHRIA--KLSDYGLSIVSEDINSVGGK 652
             +R +K  N L + ++    KL D+GLS     +N+    
Sbjct: 191 --HRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYY 229

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 34/170 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL-------RLDLLA 534
           + FD    +G GS+G++   +  E+G   A++ L    K  V  LK        +  +L 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL---DKQKVVKLKQIEHTLNEK-RILQ 96

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
            +  P LV L     D         + +++V E+++ G   +H+      ++  +SE  A
Sbjct: 97  AVNFPFLVKLEFSFKDN--------SNLYMVMEYVAGGEMFSHLR-----RIGRFSEPHA 143

Query: 595 VLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
                 +    ++LH+  +I      R +K  N+L+++    +++D+G +
Sbjct: 144 RFYAAQIVLTFEYLHSLDLI-----YRDLKPENLLIDQQGYIQVTDFGFA 188

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 37/172 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN------LKLRLDLLAK 535
           +NF+   ++G+GS+GK+   R+ E G   A++ L   K   +++      +  +  L   
Sbjct: 23  DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVL--KKDVILQDDDVECTMTEKRILSLA 80

Query: 536 LRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
             HP L  L                  +++F V EF++ G+   HI      K   + E 
Sbjct: 81  RNHPFLTQLF-----------CCFQTPDRLFFVMEFVNGGDLMFHIQ-----KSRRFDEA 124

Query: 593 LAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            A      +  A+ FLH  G+I      R +K +N+LL+     KL+D+G+ 
Sbjct: 125 RARFYAAEIISALMFLHDKGII-----YRDLKLDNVLLDHEGHCKLADFGMC 171

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 39/173 (22%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL-------RLDLLA 534
            +F +  ++G+GS+GK++     +     AI+ L   KK  V            +  L  
Sbjct: 17  EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKAL---KKDVVLMDDDVECTMVEKRVLSL 73

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSE 591
              HP L  +                    +F V E+++ G+   HI          +  
Sbjct: 74  AWEHPFLTHMF-----------CTFQTKENLFFVMEYLNGGDLMYHIQ-----SCHKFDL 117

Query: 592 RLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             A      +   +QFLH+ G++      R +K +NILL++    K++D+G+ 
Sbjct: 118 SRATFYAAEIILGLQFLHSKGIV-----YRDLKLDNILLDKDGHIKIADFGMC 165

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 48/211 (22%)

Query: 492 GEGSYGKLYKG---RLENGTSVAIRCLPSSKKYTVRNLKLRLD----LLAKLRHPHLVCL 544
             G  G +Y      + NG  V ++ L  S        +         LA++ HP +V +
Sbjct: 89  AHGGLGWIYLALDRNV-NGRPVVLKGLVHSGD---AEAQAMAMAERQFLAEVVHPSIVQI 144

Query: 545 LGHCIDGGGRDDYAVNKV-FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
                +     D   + V ++V E++   + +    +      L  +E +A L+ +  A+
Sbjct: 145 ----FNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQK-----LPVAEAIAYLLEILPAL 195

Query: 604 QFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG---------- 651
            +LH+ G++        +K  NI+L E ++ KL D G          + G          
Sbjct: 196 SYLHSIGLV-----YNDLKPENIMLTEEQL-KLIDLGAVSRINSFGYLYGTPGFQAPEIV 249

Query: 652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
                  +        D+++ G  L      
Sbjct: 250 RTGPTVAT--------DIYTVGRTLAALTLD 272

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 429 EQHLLHKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMS 488
             H  H      +   +    + +     + A    E   A  S  L+       +FD+ 
Sbjct: 5   HHHHHHDYDIPTTENLYFQGAMGSGIEEEKEAMNTRESGKASSSLGLQ-------DFDLL 57

Query: 489 AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL------RLDLLAKLRHPHL 541
            ++G GSY K+   RL +     A+R +   K+    +  +      +        HP L
Sbjct: 58  RVIGRGSYAKVLLVRLKKTDRIYAMRVV--KKELVNDDEDIDWVQTEKHVFEQASNHPFL 115

Query: 542 VCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           V L                  +++F V E+++ G+   H+      +     E  A    
Sbjct: 116 VGLH-----------SCFQTESRLFFVIEYVNGGDLMFHMQ-----RQRKLPEEHARFYS 159

Query: 599 --VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
             ++ A+ +LH  G+I      R +K +N+LL+     KL+DYG+ 
Sbjct: 160 AEISLALNYLHERGII-----YRDLKLDNVLLDSEGHIKLTDYGMC 200

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 157 SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQR 212
           SVP  I T    Q L L DN      P  FD L  LT L + NN+L    AG F     +
Sbjct: 23  SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF----DK 76

Query: 213 ISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDN 247
           ++ L+ L L+ N +  S+P     +L SL  + L +N
Sbjct: 77  LTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 15/108 (13%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
           +  + +   +G GS+G + +   +E+G   A++ +    +Y  R L     ++  L H +
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELD----IMKVLDHVN 61

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
           ++ L+ +    G  +           +     N   +  ++       
Sbjct: 62  IIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQ 109

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 48/263 (18%)

Query: 434 HKSVQDNSATGFSSEVLTNARYVSEAAKLGSEGLPACRSFTLEELKEATNNFDMSAIMGE 493
           H++         +   ++ ++   +  K      P           +  + +++  ++G 
Sbjct: 4   HEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGT 63

Query: 494 GSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNLKLRLDLLAKLRHPHLVCLLG 546
           GSYG + +         VAI+ +          K  +R +     +L +L H H+V +L 
Sbjct: 64  GSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIA----ILNRLNHDHVVKVL- 118

Query: 547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA------VLIGVA 600
             +     + +  +++++V E            ++   K+      L       +L  + 
Sbjct: 119 DIVIPKDVEKF--DELYVVLEIA----------DSDFKKLFRTPVYLTELHIKTLLYNLL 166

Query: 601 KAVQFLHT-GVI-----PGFFNNRVKTNNILLNEHRIAKLSDYGLS---IVSEDINSVGG 651
             V+++H+ G++     P          N L+N+    K+ D+GL+      E+ NS   
Sbjct: 167 VGVKYVHSAGILHRDLKPA---------NCLVNQDCSVKVCDFGLARTVDYPENGNSQLP 217

Query: 652 KQEDPNSWEMTKLEDDVFSFGFM 674
                +   +            +
Sbjct: 218 ISPREDDMNLVTFPHTKNLKRQL 240

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 37/172 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRN------LKLRLDLLAK 535
           ++F    ++G+GS+GK+   R        A++ L   KK  ++       +  R  LL  
Sbjct: 38  SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVL--QKKAILKKKEEKHIMSERNVLLKN 95

Query: 536 LRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
           ++HP LV L  H         ++    +K++ V ++++ G    H+      +   + E 
Sbjct: 96  VKHPFLVGL--H---------FSFQTADKLYFVLDYINGGELFYHLQ-----RERCFLEP 139

Query: 593 LAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            A      +A A+ +LH+  ++      R +K  NILL+      L+D+GL 
Sbjct: 140 RARFYAAEIASALGYLHSLNIV-----YRDLKPENILLDSQGHIVLTDFGLC 186

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 41/176 (23%)

Query: 483 NNFDMSAIMGEGSYGKLY----KGRLENGTSVAIRCLPSSKKYTVRNLKL-------RLD 531
            NF++  ++G G+YGK++        + G   A++ L   K   V+  K        R  
Sbjct: 54  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL--KKATIVQKAKTTEHTRTERQV 111

Query: 532 LLAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLN 588
           L    + P LV L  H         YA     K+ L+ ++++ G   TH+S     +   
Sbjct: 112 LEHIRQSPFLVTL--H---------YAFQTETKLHLILDYINGGELFTHLS-----QRER 155

Query: 589 WSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           ++E    +    +  A++ LH  G+I      R +K  NILL+ +    L+D+GLS
Sbjct: 156 FTEHEVQIYVGEIVLALEHLHKLGII-----YRDIKLENILLDSNGHVVLTDFGLS 206

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 31/180 (17%), Positives = 74/180 (41%), Gaps = 37/180 (20%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRL--- 530
           +++++    +F++  ++G G++G++   +L       A++ L    K+ +          
Sbjct: 66  VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKIL---NKWEMLKRAETACFR 122

Query: 531 ---DLLAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPG 584
              D+L       +  L            YA    N ++LV ++   G+  T +S     
Sbjct: 123 EERDVLVNGDSKWITTLH-----------YAFQDDNNLYLVMDYYVGGDLLTLLS-KFED 170

Query: 585 KVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           ++    E +A      +  A+  +H    +     +R +K +NIL++ +   +L+D+G  
Sbjct: 171 RL---PEEMARFYLAEMVIAIDSVHQLHYV-----HRDIKPDNILMDMNGHIRLADFGSC 222

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 34/180 (18%), Positives = 81/180 (45%), Gaps = 37/180 (20%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL----- 528
           L+E++   ++F++  ++G G++ ++   ++ + G   A++ +  +K   ++  ++     
Sbjct: 53  LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIM--NKWDMLKRGEVSCFRE 110

Query: 529 -RLDLLAKLRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPG 584
            R D+L       +  L            +A    N ++LV E+   G+  T +S+   G
Sbjct: 111 ER-DVLVNGDRRWITQLH-----------FAFQDENYLYLVMEYYVGGDLLTLLSK--FG 156

Query: 585 KVLNWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           + +     +A      +  A+  +H  G +     +R +K +NILL+     +L+D+G  
Sbjct: 157 ERI--PAEMARFYLAEIVMAIDSVHRLGYV-----HRDIKPDNILLDRCGHIRLADFGSC 209

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 44.5 bits (106), Expect = 9e-05
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 37/172 (21%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL------RLDLLAK 535
            +FD+  ++G GSY K+   RL +     A++ +   K+    +  +      +      
Sbjct: 9   QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVV--KKELVNDDEDIDWVQTEKHVFEQA 66

Query: 536 LRHPHLVCLLGHCIDGGGRDDYA---VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
             HP LV L                  +++F V E+++ G+   H+      +     E 
Sbjct: 67  SNHPFLVGLH-----------SCFQTESRLFFVIEYVNGGDLMFHMQ-----RQRKLPEE 110

Query: 593 LAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            A      ++ A+ +LH  G+I      R +K +N+LL+     KL+DYG+ 
Sbjct: 111 HARFYSAEISLALNYLHERGII-----YRDLKLDNVLLDSEGHIKLTDYGMC 157

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 37/177 (20%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDL------LA 534
            + +D    +G G +  + K R    G   A + +   +  + R    R D+      L 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           +++HP+++ L     +           V L+ E ++ G     ++E       + +E  A
Sbjct: 70  EIQHPNVITLHEVYENK--------TDVILILELVAGGELFDFLAEKE-----SLTEEEA 116

Query: 595 VLIG--VAKAVQFLHTGVIPGFFNNRV----KTNNILLNEHRIA----KLSDYGLSI 641
                 +   V +LH                K  NI+L +  +     K+ D+GL+ 
Sbjct: 117 TEFLKQILNGVYYLH-------SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 166

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 34/170 (20%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL-------RLDLLA 534
            +F +   +G GS+G+++  R   NG   A++ L   KK  V  LK        R  +L+
Sbjct: 6   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL---KKEIVVRLKQVEHTNDER-LMLS 61

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
            + HP ++ + G   D          ++F++ +++  G   + +      K   +   +A
Sbjct: 62  IVTHPFIIRMWGTFQDA--------QQIFMIMDYIEGGELFSLLR-----KSQRFPNPVA 108

Query: 595 VLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
                 V  A+++LH+  +I      R +K  NILL+++   K++D+G +
Sbjct: 109 KFYAAEVCLALEYLHSKDII-----YRDLKPENILLDKNGHIKITDFGFA 153

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 66/246 (26%)

Query: 143 SLEYLDLSSNFL-------FGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL 195
           S++ + LS N +              I++   L+     D F         ++L  L   
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFSDIFTGRVKDEIPEALRLLL-- 87

Query: 196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGS-----LPDLSSLGSLNVLNLSDNKL- 249
                        ++ +   L  + LS NA   +     +  LS    L  L L +N L 
Sbjct: 88  ------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135

Query: 250 ---------------DSNLPKLPRGLVMAFLSNNSFSGE----IPKQYGQLNQLQQLDMS 290
                           +   K    L       N           K +     L  + M 
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195

Query: 291 FNALR--GMPP---PAIFSLPNISDLNLASNKF--------SGSLPKNLNCGGKLVFFDI 337
            N +R  G+       +     +  L+L  N F        + +L    N    L    +
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN----LRELGL 251

Query: 338 SNNKLT 343
           ++  L+
Sbjct: 252 NDCLLS 257

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 22/195 (11%), Positives = 53/195 (27%), Gaps = 41/195 (21%)

Query: 492 GEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYT---VRNLKLRLDLLAKLRHPHLVCLLGH 547
           G     + ++         VA+  +          ++    R   L+++  P +  +L  
Sbjct: 40  GGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDV 99

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH 607
                G          +V E++  G+ +     +      +    +  +  +A A    H
Sbjct: 100 VHTRAG--------GLVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAH 146

Query: 608 -TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMTKLED 666
             GV           + + ++      L+                   +P        +D
Sbjct: 147 RAGVALS----IDHPSRVRVSIDGDVVLAYPAT-----------MPDANP--------QD 183

Query: 667 DVFSFGFMLLESVAG 681
           D+   G  L   +  
Sbjct: 184 DIRGIGASLYALLVN 198

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKI--HRLYSLEYLDL---SSNFLFGSVPPKIS----- 163
                +L+ L ++S G+  S+ + I    L +LE L L     ++ F             
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 164 -TMVKLQTLILDDNFFNNTIPNWF---DSLPSLTFLSMRNNKL----AGPFPSSIQRIST 215
                L+ L + D    N +   F   D LP L  + +    L    A      + +I  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 216 LSDLDLSKNAISGSLPDLSSLGSLNVLNLSDN 247
           L  +++  N +S  +           +++SD+
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMKIDVSDS 340

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 26/159 (16%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGH 547
           ++G G  GK+ +          A++ L    K      +  ++L  +  + PH+V ++  
Sbjct: 25  VLGLGINGKVLQIFNKRTQEKFALKMLQDCPK-----ARREVELHWRASQCPHIVRIVDV 79

Query: 548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI--GVAKAVQF 605
             +           + +V E +  G   + I +        ++ER A  I   + +A+Q+
Sbjct: 80  YENLYAGRKC----LLIVMECLDGGELFSRIQDRGDQA---FTEREASEIMKSIGEAIQY 132

Query: 606 LHT-GVIPGFFNNR-VKTNNILL---NEHRIAKLSDYGL 639
           LH+  +      +R VK  N+L      + I KL+D+G 
Sbjct: 133 LHSINIA-----HRDVKPENLLYTSKRPNAILKLTDFGF 166

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 38/197 (19%), Positives = 85/197 (43%), Gaps = 45/197 (22%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL-----PSSKKYTVRNLKLRLDLL 533
           +    +   + +GEG+YG +       N   VAI+ +      +  + T+R +K+    L
Sbjct: 24  DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKI----L 79

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            + RH +++ +    I     +      V++V + M          E    K+L  ++ L
Sbjct: 80  LRFRHENIIGIN-DIIRAPTIEQM--KDVYIVQDLM----------ETDLYKLLK-TQHL 125

Query: 594 A------VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSED 645
           +       L  + + ++++H+  V+     +R +K +N+LLN     K+ D+GL+ V++ 
Sbjct: 126 SNDHICYFLYQILRGLKYIHSANVL-----HRDLKPSNLLLNTTCDLKICDFGLARVADP 180

Query: 646 INSVGGKQEDPNSWEMT 662
                   +  ++  +T
Sbjct: 181 --------DHDHTGFLT 189

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNLKLRLDL 532
           E    +     +G G+YG +       +G  VAI+ L          K   R L L    
Sbjct: 21  ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLL---- 76

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMS---NGNFRTHISENTPGKVLNW 589
           L  ++H +++ LL          ++     +LV  FM            SE         
Sbjct: 77  LKHMQHENVIGLLDVFTPASSLRNF--YDFYLVMPFMQTDLQKIMGLKFSE--------- 125

Query: 590 SERLAVLI-GVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            E++  L+  + K ++++H+ GV+     +R +K  N+ +NE    K+ D+GL+
Sbjct: 126 -EKIQYLVYQMLKGLKYIHSAGVV-----HRDLKPGNLAVNEDCELKILDFGLA 173

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 34/174 (19%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNLKLRLDL 532
                +     +G G+ G +          +VAI+ L       +  K   R L L    
Sbjct: 22  TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVL---- 77

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN---W 589
           +  + H +++ LL   +    +       V++V E M          +    +V+     
Sbjct: 78  MKCVNHKNIIGLLN--VFTPQKSLEEFQDVYIVMELM----------DANLCQVIQMELD 125

Query: 590 SERLAVLI-GVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
            ER++ L+  +   ++ LH+ G+I     +R +K +NI++      K+ D+GL+
Sbjct: 126 HERMSYLLYQMLCGIKHLHSAGII-----HRDLKPSNIVVKSDCTLKILDFGLA 174

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 33/177 (18%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKL----- 528
           + +L+    ++++  ++G G++G++   R        A++ L  SK   ++         
Sbjct: 61  IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLL--SKFEMIKRSDSAFFWE 118

Query: 529 -RLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVL 587
            R D++A    P +V L     D           +++V E+M  G+    +S      V 
Sbjct: 119 ER-DIMAFANSPWVVQLFYAFQDD--------RYLYMVMEYMPGGDLVNLMSN---YDV- 165

Query: 588 NWSERLAVLIG--VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
              E+ A      V  A+  +H+ G I     +R VK +N+LL++    KL+D+G  
Sbjct: 166 --PEKWARFYTAEVVLALDAIHSMGFI-----HRDVKPDNMLLDKSGHLKLADFGTC 215

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNLKLRLDL 532
                +     +G G+ G +          +VAI+ L       +  K   R L L    
Sbjct: 59  TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVL---- 114

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLN---W 589
           +  + H +++ LL         +++    V+LV E M          +    +V+     
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLEEF--QDVYLVMELM----------DANLCQVIQMELD 162

Query: 590 SERLAVLI-GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS 640
            ER++ L+  +   ++ LH+    G  +  +K +NI++      K+ D+GL+
Sbjct: 163 HERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 35/176 (19%), Positives = 75/176 (42%), Gaps = 37/176 (21%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL------PSSKKYTVRNLKLRLDL 532
           E    +   + +G G+YG +      + G  VA++ L          K T R L+L    
Sbjct: 26  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRL---- 81

Query: 533 LAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
           L  ++H +++ LL         +++  N V+LV   M                ++   ++
Sbjct: 82  LKHMKHENVIGLLDVFTPARSLEEF--NDVYLVTHLM----------GADLNNIVK-CQK 128

Query: 593 LA------VLIGVAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLS 640
           L       ++  + + ++++H+  +I     +R +K +N+ +NE    K+ D+GL+
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADII-----HRDLKPSNLAVNEDCELKILDFGLA 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	766
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.98
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.98
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.98
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.98
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.84
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.03
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.82
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.27
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.96
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.92
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.82
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.7
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.42
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.38
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.15
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.87
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	96.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.53
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.44
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.22
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.17
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.62
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	95.56
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	94.96
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	94.96
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	94.65
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	92.9
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.43
3mes_A	424	Choline kinase; malaria, structural genomics, stru	89.43
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	86.92

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=6.7e-50  Score=426.90  Aligned_cols=253  Identities=25%  Similarity=0.425  Sum_probs=192.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|.+.+.||+|+||+||+|++.      +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+    
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----  116 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR----  116 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----
Confidence            46777889999999999999864      47899999998877777889999999999999999999999998763    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                          .++||||||++|+|.+++++...            ..+++|.+++.++.|||+||+|||+.   +||||||||+||
T Consensus       117 ----~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NI  189 (329)
T 4aoj_A          117 ----PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNC  189 (329)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGE
T ss_pred             ----EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhE
Confidence                68999999999999999976432            23589999999999999999999997   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccc--cccCCCCCC--------cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINS--VGGKQEDPN--------SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQ  693 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~--~~~~~~~~~--------~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~  693 (766)
                      |||+++++||+|||+|+.......  .......+.        ....++.++|||||||+||||+| |+.||.....  .
T Consensus       190 Ll~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~--~  267 (329)
T 4aoj_A          190 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN--T  267 (329)
T ss_dssp             EEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--H
T ss_pred             EECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--H
Confidence            999999999999999976532211  111111111        12346678999999999999999 8999874332  2


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      +.+..+.. +...+  .|   ...+    ..+.+|+.+||+.||++||||+||+++|+.+.+...
T Consensus       268 ~~~~~i~~-g~~~~--~p---~~~~----~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp  322 (329)
T 4aoj_A          268 EAIDCITQ-GRELE--RP---RACP----PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP  322 (329)
T ss_dssp             HHHHHHHH-TCCCC--CC---TTCC----HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHc-CCCCC--Cc---cccc----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence            22222221 11111  11   1112    347789999999999999999999999999887543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.4e-50  Score=423.34  Aligned_cols=252  Identities=23%  Similarity=0.408  Sum_probs=195.6

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|.+.+.||+|+||+||+|++.      ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++    
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----   88 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD----   88 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC----
Confidence            56778899999999999999863      47889999998777777789999999999999999999999998763    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCC----------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENT----------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                          .++||||||++|+|.++|++..          ....++|.+++.++.|||+||+|||+.   +|+||||||+|||+
T Consensus        89 ----~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl  161 (299)
T 4asz_A           89 ----PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLV  161 (299)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             ----EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEE
Confidence                6899999999999999997642          234699999999999999999999997   89999999999999


Q ss_pred             cCCCcEEEecCCCCccccccccc--cc----C----CCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHH
Q 004232          627 NEHRIAKLSDYGLSIVSEDINSV--GG----K----QEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEE  695 (766)
Q Consensus       627 d~~~~~kl~DFGla~~~~~~~~~--~~----~----~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~  695 (766)
                      ++++++||+|||+|+........  ..    +    .++......++.++|||||||++|||+| |+.||.....  .+.
T Consensus       162 ~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--~~~  239 (299)
T 4asz_A          162 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NEV  239 (299)
T ss_dssp             CGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HHH
T ss_pred             CCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HHH
Confidence            99999999999999764332111  11    0    0111112456778999999999999999 8999874332  222


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      +..+.. +...+.  |   ...+    ..+.+|+.+||+.||++||||+||++.|+.+.+..
T Consensus       240 ~~~i~~-~~~~~~--p---~~~~----~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          240 IECITQ-GRVLQR--P---RTCP----QEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             HHHHHH-TCCCCC--C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHc-CCCCCC--C---ccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            222221 111111  1   1122    34778999999999999999999999999887643

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=5.3e-49  Score=416.04  Aligned_cols=248  Identities=22%  Similarity=0.365  Sum_probs=189.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      .++++.+.||+|+||+||+|++.      +++.||||+++... ....++|.+|+.+|++++|||||+++|+|.+++   
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~---  102 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ---  102 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC---
Confidence            34566789999999999999863      46889999997543 334678999999999999999999999998763   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCC
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTN  622 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~  622 (766)
                           .++||||||++|+|.++|+...+             ...++|.+++.++.|||+||+|||+.   +||||||||+
T Consensus       103 -----~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~  174 (308)
T 4gt4_A          103 -----PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATR  174 (308)
T ss_dssp             -----SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGG
T ss_pred             -----EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCcccc
Confidence                 68999999999999999975432             13589999999999999999999997   8999999999


Q ss_pred             ceEEcCCCcEEEecCCCCccccccccc--ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccc
Q 004232          623 NILLNEHRIAKLSDYGLSIVSEDINSV--GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQF  691 (766)
Q Consensus       623 NILld~~~~~kl~DFGla~~~~~~~~~--~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~  691 (766)
                      |||||+++++||+|||+|+........  ......+..|        ..++.++|||||||+||||+| |+.||..... 
T Consensus       175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-  253 (308)
T 4gt4_A          175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-  253 (308)
T ss_dssp             GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-
T ss_pred             ceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH-
Confidence            999999999999999999765332111  1111111122        456778999999999999999 8999874332 


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                       .+....+. .+...+..     ..    +...+.+|+.+||+.||++||||+||+++|+..
T Consensus       254 -~~~~~~i~-~~~~~~~p-----~~----~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          254 -QDVVEMIR-NRQVLPCP-----DD----CPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             -HHHHHHHH-TTCCCCCC-----TT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             -HHHHHHHH-cCCCCCCc-----cc----chHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence             22222222 11111111     11    223477899999999999999999999999853

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5e-48  Score=406.87  Aligned_cols=250  Identities=19%  Similarity=0.353  Sum_probs=187.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .+++.+.+.||+|+||+||+|++..  .||||+++..  .....++|.+|+++|++++|||||+++|+|.++        
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~--------  104 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD--------  104 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--------
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC--------
Confidence            3567788999999999999998753  5999998753  344567899999999999999999999998653        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .++||||||++|+|.++|+...  ..++|.+++.|+.|||+||+|||+.   +||||||||+|||||+++++||+|||+
T Consensus       105 -~~~iVmEy~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGl  178 (307)
T 3omv_A          105 -NLAIVTQWCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGL  178 (307)
T ss_dssp             -SCEEEEECCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSS
T ss_pred             -eEEEEEEcCCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccC
Confidence             4799999999999999997643  3489999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc------ccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          640 SIVSEDINSV------GGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       640 a~~~~~~~~~------~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |+........      .++.  ..|..     ...++.++|||||||+||||+||+.||......  ..+........  
T Consensus       179 a~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~--~~~~~~~~~~~--  254 (307)
T 3omv_A          179 ATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR--DQIIFMVGRGY--  254 (307)
T ss_dssp             CBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHTTC--
T ss_pred             ceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH--HHHHHHHhcCC--
Confidence            9765322110      1111  11111     123566899999999999999999999743221  11111111111  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                        ..|.... ........+.+|+.+||+.||++||||.||+++|+.+.
T Consensus       255 --~~p~~~~-~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~  299 (307)
T 3omv_A          255 --ASPDLSK-LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ  299 (307)
T ss_dssp             --CCCCSTT-SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred             --CCCCccc-ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence              1111100 01111234778999999999999999999999998764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.2e-47  Score=404.41  Aligned_cols=260  Identities=16%  Similarity=0.311  Sum_probs=188.8

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|.+.+.||+|+||+||+|++ +|+.||||+++..... ...++.|+..+.+++|||||+++|+|.++++.    ...+
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~----~~~~   76 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGT----WTQL   76 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSS----SEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC----ceEE
Confidence            3466788999999999999998 5899999999654322 23345567777889999999999999875421    1368


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----CCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG-----VIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      |||||||++|+|.+++++.    .++|..+.+++.|+|+||+|||++     ..++|+||||||+|||||+++++||+||
T Consensus        77 ~lV~Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DF  152 (303)
T 3hmm_A           77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEecCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeC
Confidence            9999999999999999764    389999999999999999999986     2468999999999999999999999999


Q ss_pred             CCCccccccccccc----CCCCCCcccC--------------CCCCCCEeehhHHHHHHhcCCCccccCccc--------
Q 004232          638 GLSIVSEDINSVGG----KQEDPNSWEM--------------TKLEDDVFSFGFMLLESVAGPSVAARKGQF--------  691 (766)
Q Consensus       638 Gla~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~DV~SfGvil~ElltG~~p~~~~~~~--------  691 (766)
                      |+|+..........    ....+..|..              ++.++|||||||++|||+||+.|+......        
T Consensus       153 Gla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~  232 (303)
T 3hmm_A          153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  232 (303)
T ss_dssp             TTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred             CCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcc
Confidence            99976543221100    0001111211              234789999999999999998776432110        


Q ss_pred             ----hHHHHhhhhcccCccccccccccCC-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          692 ----LQEELDSLNSQEGRQRLVDPVVMAT-SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       692 ----~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                          ....+......    +..+|.+... ...+....+.+|+.+||+.||++||||.||+++|+++.+-
T Consensus       233 ~~~~~~~~~~~~~~~----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          233 PSDPSVEEMRKVVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CSSCCHHHHHHHHTT----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             cccchHHHHHHHHhc----ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence                11111111111    1112222111 1224556688999999999999999999999999998753

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1e-47  Score=413.30  Aligned_cols=264  Identities=23%  Similarity=0.351  Sum_probs=200.2

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCC-CCcccc
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRH-PHLVCL  544 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~H-pniv~l  544 (766)
                      +..++++...++|++.+.||+|+||+||+|++.      .++.||||+++... ....+.|.+|+++|++++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            344566666788999999999999999999854      24679999997643 3446789999999999976 899999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVI  611 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~  611 (766)
                      +|+|.+++       +.+++|||||++|+|.++|++...             ...++|.+++.++.|||+||+|||++  
T Consensus       134 ~g~~~~~~-------~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~--  204 (353)
T 4ase_A          134 LGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR--  204 (353)
T ss_dssp             EEEECCTT-------SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             EEEEEecC-------CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC--
Confidence            99998754       357999999999999999975321             23589999999999999999999997  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc--ccCCCCCC--------cccCCCCCCCEeehhHHHHHHhc-
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV--GGKQEDPN--------SWEMTKLEDDVFSFGFMLLESVA-  680 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~--~~~~~~~~--------~~~~~~~~~DV~SfGvil~Ellt-  680 (766)
                       +||||||||+|||+++++++||+|||+|+........  ......+.        ....++.++|||||||+||||+| 
T Consensus       205 -~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~  283 (353)
T 4ase_A          205 -KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL  283 (353)
T ss_dssp             -TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTT
T ss_pred             -CeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhC
Confidence             8999999999999999999999999999765322111  01000111        12456778999999999999998 


Q ss_pred             CCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          681 GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       681 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      |+.||......  ..+......+...+..+     ..+    ..+.+++.+||+.||++||||+||++.|+.+.+..
T Consensus       284 G~~Pf~~~~~~--~~~~~~i~~g~~~~~p~-----~~~----~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          284 GASPYPGVKID--EEFCRRLKEGTRMRAPD-----YTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             SCCSSTTCCCS--HHHHHHHHHTCCCCCCT-----TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHH--HHHHHHHHcCCCCCCCc-----cCC----HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence            89998743221  11111212221111111     112    34778999999999999999999999999987644

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=2.4e-45  Score=383.67  Aligned_cols=244  Identities=23%  Similarity=0.286  Sum_probs=182.5

Q ss_pred             CcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          486 DMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++.+.||+|+||+||+|+.. ++..||||++...  .....+.|.+|+++|++++|||||+++++|.+....    ...+
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~----~~~~  104 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG----KKCI  104 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETT----EEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCC----CcEE
Confidence            55678999999999999864 6899999998643  344567899999999999999999999998753210    1358


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla~  641 (766)
                      |||||||++|+|.+++.+..   .+++.....++.||+.||+|||++. ++|+||||||+||||+ .++.+||+|||+|+
T Consensus       105 ~lvmEy~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~  180 (290)
T 3fpq_A          105 VLVTELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence            99999999999999998653   4899999999999999999999862 3599999999999998 47999999999997


Q ss_pred             cccccccc--ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          642 VSEDINSV--GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       642 ~~~~~~~~--~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ........  .+++    ++.. ...++.++|||||||++|||+||+.||..... .......+.. .......+    .
T Consensus       181 ~~~~~~~~~~~GTp~YmAPE~~-~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~-~~~~~~~i~~-~~~~~~~~----~  253 (290)
T 3fpq_A          181 LKRASFAKAVIGTPEFMAPEMY-EEKYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQIYRRVTS-GVKPASFD----K  253 (290)
T ss_dssp             GCCTTSBEESCSSCCCCCGGGG-GTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHHHHHHHTT-TCCCGGGG----G
T ss_pred             eCCCCccCCcccCccccCHHHc-CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-HHHHHHHHHc-CCCCCCCC----c
Confidence            64432211  1111    1111 13467789999999999999999999964322 1111222211 11111111    1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+    ..+.+|+.+||+.||++|||++|+++
T Consensus       254 ~~~----~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          254 VAI----PEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCC----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111    23678999999999999999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-45  Score=394.44  Aligned_cols=243  Identities=19%  Similarity=0.290  Sum_probs=183.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++...  .....+.+.+|+++|++++|||||++++++.+.+      
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~------   96 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENG------   96 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT------
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC------
Confidence            36799999999999999999985 57999999999654  3345678999999999999999999999998764      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|||||||++|+|.+++.... ...+++.+...++.||+.||+|||++   +|+||||||+||||+.++.+||+|||
T Consensus        97 --~~yiVmEy~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFG  170 (350)
T 4b9d_A           97 --SLYIVMDYCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFG  170 (350)
T ss_dssp             --EEEEEEECCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTT
T ss_pred             --EEEEEEeCCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccc
Confidence              7899999999999999997543 23478888999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc----cccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINS----VGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~----~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +|+.......    ..++.    ++......++.++||||+||++|||+||+.||.....  ...+..+.... ...   
T Consensus       171 la~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~-~~~---  244 (350)
T 4b9d_A          171 IARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM--KNLVLKIISGS-FPP---  244 (350)
T ss_dssp             EESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTC-CCC---
T ss_pred             cceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCC-CCC---
Confidence            9986543211    11111    1111224466789999999999999999999974332  22222222211 111   


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        .....+    ..+.+|+.+||+.||++|||++|+++
T Consensus       245 --~~~~~s----~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          245 --VSLHYS----YDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             --CCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --CCccCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence              111122    23678999999999999999999976

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.4e-45  Score=393.06  Aligned_cols=242  Identities=21%  Similarity=0.304  Sum_probs=188.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ..|+..+.||+|+||+||+|+.. +|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+        .
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--------~  145 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--------E  145 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETT--------E
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--------E
Confidence            46888899999999999999864 79999999997655555567899999999999999999999998864        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +|||||||++|+|.+++.+.    .+++.+...++.||+.||+|||++   +|+||||||+|||++.++++||+|||+|+
T Consensus       146 ~~ivmEy~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~  218 (346)
T 4fih_A          146 LWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA  218 (346)
T ss_dssp             EEEEECCCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCce
Confidence            99999999999999999753    388999999999999999999998   89999999999999999999999999997


Q ss_pred             cccccccc----ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSV----GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~----~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ........    .++.    ++......++.++||||+||++|||+||+.||.....  ...+..+... ....+..+  
T Consensus       219 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~-~~~~~~~~--  293 (346)
T 4fih_A          219 QVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDN-LPPRLKNL--  293 (346)
T ss_dssp             ECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHS-SCCCCSCG--
T ss_pred             ecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcC-CCCCCCcc--
Confidence            65432111    1111    1111224467789999999999999999999974332  2222222211 11111111  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ...+    ..+.+|+.+||+.||++|||++|+++.
T Consensus       294 -~~~s----~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          294 -HKVS----PSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             -GGSC----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -ccCC----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence             1111    236789999999999999999998753

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=9e-46  Score=393.44  Aligned_cols=244  Identities=19%  Similarity=0.219  Sum_probs=186.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.|+..+.||+|+||+||+|+. .+|+.||||+++....     ..+|+.+|++++|||||++++++.+.+        
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~--------  123 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGP--------  123 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETT--------
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECC--------
Confidence            34677788999999999999996 4699999999975432     246999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGl  639 (766)
                      .+|||||||++|+|.+++++..   .+++.+...++.||+.||+|||++   +||||||||+|||++.++ ++||+|||+
T Consensus       124 ~~~ivmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGl  197 (336)
T 4g3f_A          124 WVNIFMELLEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGH  197 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTT
T ss_pred             EEEEEEeccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCC
Confidence            7899999999999999998654   489999999999999999999997   899999999999999887 699999999


Q ss_pred             Ccccccccc---------cccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCc
Q 004232          640 SIVSEDINS---------VGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGR  705 (766)
Q Consensus       640 a~~~~~~~~---------~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~  705 (766)
                      |+.......         ..++.    ++......++.++|||||||++|||+||+.||...... ....   +..... 
T Consensus       198 a~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~---i~~~~~-  273 (336)
T 4g3f_A          198 ALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLK---IASEPP-  273 (336)
T ss_dssp             CEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHH---HHHSCC-
T ss_pred             CeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH---HHcCCC-
Confidence            976533211         00111    11112245677899999999999999999999743321 1111   111110 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ..  +.+....+    ..+.+++.+||+.||.+|||+.|+++.|+.+.+
T Consensus       274 -~~--~~~~~~~s----~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~  316 (336)
T 4g3f_A          274 -PI--REIPPSCA----PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ  316 (336)
T ss_dssp             -GG--GGSCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -Cc--hhcCccCC----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence             00  01111112    236788999999999999999999999988765

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.3e-44  Score=371.77  Aligned_cols=239  Identities=22%  Similarity=0.341  Sum_probs=176.8

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||++++++.+.+      
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~------   86 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKD------   86 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSS------
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC------
Confidence            6899999999999999999985 579999999996542   233567999999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|+||||+ +|+|.+++.+..   .+++.+...++.||+.||+|||++   +|+||||||+|||+++++++||+|||
T Consensus        87 --~~~ivmEy~-~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFG  157 (275)
T 3hyh_A           87 --EIIMVIEYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFG  157 (275)
T ss_dssp             --EEEEEEECC-CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSS
T ss_pred             --EEEEEEeCC-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecC
Confidence              789999999 689999997654   489999999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccccccc---cCCC--CCC--cccC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSVG---GKQE--DPN--SWEM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~~---~~~~--~~~--~~~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +|+...+.....   ++..  .|.  .... .+.++||||+||++|||+||+.||.....  ......+....  ..+  
T Consensus       158 la~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--~~~~~~i~~~~--~~~--  231 (275)
T 3hyh_A          158 LSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNISNGV--YTL--  231 (275)
T ss_dssp             CC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC--CCC--
T ss_pred             CCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCC--CCC--
Confidence            997654322111   1111  111  1122 34678999999999999999999974332  22222222111  111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      |   ...+    ..+.+++.+|++.||++|||++|+++.
T Consensus       232 p---~~~s----~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          232 P---KFLS----PGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             C---TTSC----HHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             C---CCCC----HHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            1   1112    236789999999999999999999763

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=393.56  Aligned_cols=243  Identities=21%  Similarity=0.299  Sum_probs=189.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.|+..+.||+|+||+||+|+. .+|+.||||++........+.+.+|+.+|++++|||||++++++.+.+        
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~--------  221 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD--------  221 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETT--------
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECC--------
Confidence            35689999999999999999996 479999999997665555667899999999999999999999998864        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      .+|||||||++|+|.+++...    .+++.+...++.||+.||+|||++   +||||||||+||||+.++.+||+|||+|
T Consensus       222 ~~~iVmEy~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla  294 (423)
T 4fie_A          222 ELWVVMEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFC  294 (423)
T ss_dssp             EEEEEEECCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTC
T ss_pred             EEEEEEeCCCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccc
Confidence            799999999999999998754    388999999999999999999998   8999999999999999999999999999


Q ss_pred             ccccccccc----ccCCC----CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSV----GGKQE----DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~----~~~~~----~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +........    .++..    +......++.++|||||||++|||++|+.||.....  ...+..+... ....+..+ 
T Consensus       295 ~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~-~~~~~~~~-  370 (423)
T 4fie_A          295 AQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDN-LPPRLKNL-  370 (423)
T ss_dssp             EECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHS-CCCCCSCT-
T ss_pred             eECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcC-CCCCCccc-
Confidence            765432111    11111    111224467789999999999999999999974332  2222222211 11111111 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ...+    ..+.+|+.+||+.||.+|||+.|+++.
T Consensus       371 --~~~s----~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          371 --HKVS----PSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             --TSSC----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --ccCC----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence              1112    236789999999999999999998763

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.7e-44  Score=377.44  Aligned_cols=238  Identities=19%  Similarity=0.278  Sum_probs=186.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||++++++.+.+      
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~------  105 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE------  105 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS------
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC------
Confidence            5799999999999999999985 579999999997542   234678999999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|+|||||++|+|.+++.+..   .++......++.||+.||+|||++   +|+||||||+|||++.++++||+|||
T Consensus       106 --~~yivmEy~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFG  177 (311)
T 4aw0_A          106 --KLYFGLSYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG  177 (311)
T ss_dssp             --EEEEEECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             --EEEEEEecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcC
Confidence              7999999999999999998653   388999999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccccc---cccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          639 LSIVSEDINS---VGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       639 la~~~~~~~~---~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      +|+.......   .....+++.       ....++.++||||+||++|||+||+.||.....  ...+..+....  ..+
T Consensus       178 la~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~--~~~  253 (311)
T 4aw0_A          178 TAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--GLIFAKIIKLE--YDF  253 (311)
T ss_dssp             TCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC--CCC
T ss_pred             CceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCC--CCC
Confidence            9986532211   111111111       123456789999999999999999999974332  22222222211  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL  747 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~  747 (766)
                      .     ...+    ..+.+|+.+|++.||++|||++|+.
T Consensus       254 p-----~~~s----~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          254 P-----EKFF----PKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             C-----TTCC----HHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             C-----cccC----HHHHHHHHHHccCCHhHCcChHHHc
Confidence            1     1112    2367899999999999999999874

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.7e-44  Score=376.48  Aligned_cols=234  Identities=23%  Similarity=0.335  Sum_probs=174.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|++.+.||+|+||+||+|+.    .+++.||||+++...  .....++.+|+++|++++|||||++++++.+++    
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~----   99 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEG----   99 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETT----
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECC----
Confidence            5699999999999999999985    247889999997542  223446888999999999999999999998764    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          .+|+|||||++|+|.+++.+..   .+++.+...++.||+.||+|||++   +|+||||||+|||++.++++||+|
T Consensus       100 ----~~~ivmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~D  169 (304)
T 3ubd_A          100 ----KLYLILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTD  169 (304)
T ss_dssp             ----EEEEEECCCTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEES
T ss_pred             ----EEEEEEEcCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecc
Confidence                7999999999999999998654   488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc-ccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSV-GGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~-~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+|+...+.... .+..+++       .....++.++||||+||++|||+||+.||.....  .+.+..+....  ..+
T Consensus       170 FGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~--~~~  245 (304)
T 3ubd_A          170 FGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR--KETMTMILKAK--LGM  245 (304)
T ss_dssp             SEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCC
T ss_pred             cccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH--HHHHHHHHcCC--CCC
Confidence            9999754322111 1111111       1224567789999999999999999999974332  22222222211  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                        |   ...+    ..+.+|+.+||+.||++|||+
T Consensus       246 --p---~~~s----~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          246 --P---QFLS----PEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             --C---TTSC----HHHHHHHHHHTCSSGGGSTTC
T ss_pred             --C---CcCC----HHHHHHHHHHcccCHHHCCCC
Confidence              1   1112    236789999999999999984

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.8e-43  Score=371.24  Aligned_cols=250  Identities=17%  Similarity=0.298  Sum_probs=176.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC---
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD---  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~---  556 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+....   
T Consensus         4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            35689999999999999999985 479999999986443 3446789999999999999999999999876542100   


Q ss_pred             -cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          557 -YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       557 -~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                       .....+|+|||||++|+|.+++.+.......++.....++.||+.||+|||++   +|+||||||+|||++.++.+||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence             00124799999999999999998765444467777889999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccc----------------ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH
Q 004232          636 DYGLSIVSEDINSV----------------GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE  695 (766)
Q Consensus       636 DFGla~~~~~~~~~----------------~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~  695 (766)
                      |||+|+........                .++.    ++......++.++|||||||++|||++   ||.... .....
T Consensus       161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~-~~~~~  236 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM-ERVRT  236 (299)
T ss_dssp             CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-HHHHH
T ss_pred             cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-HHHHH
Confidence            99999765332110                0111    111112456778999999999999997   554211 11111


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +..+.. ...     |..    ..+......+++.+||+.||.+|||+.|+++
T Consensus       237 ~~~~~~-~~~-----p~~----~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          237 LTDVRN-LKF-----PPL----FTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHHT-TCC-----CHH----HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHhc-CCC-----CCC----CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            111111 001     100    0112233567899999999999999999976

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.9e-42  Score=364.67  Aligned_cols=295  Identities=26%  Similarity=0.426  Sum_probs=251.0

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCccCCCCCCCC--CCCCCccceEecC----CCEEEEEeCCCCCCCCCCCCcccccc
Q 004232           25 QLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCY--ISSSTQVNITCQD----NFITELKIIGDKPSNVGNFDGFASAN   98 (766)
Q Consensus        25 ~~~~~~~~aLl~~k~~~~~~~~l~~W~~~~~~~C~--~~~~~~~gv~C~~----~~v~~l~l~~~~~~~~~~~~~~~~~~   98 (766)
                      .|.++|++||++||+++.+|..+++|+.+ .+||.  |     .||.|..    ++|+.+++.+..+.+.          
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~-~~~C~~~w-----~gv~C~~~~~~~~l~~L~L~~~~l~~~----------   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNRTW-----LGVLCDTDTQTYRVNNLDLSGLNLPKP----------   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTTCS-----TTEEECCSSSCCCEEEEEEECCCCSSC----------
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCC-CCCCcCCC-----cceEeCCCCCCceEEEEECCCCCccCC----------
Confidence            47889999999999999888788999764 78998  6     4799964    6788888876543210          


Q ss_pred             ccCCCcccCCcccccccCCCCCCEEeccc-ccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCc
Q 004232           99 ASLSENFSIDSFVTTLARLTSLRVLSLVS-LGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF  177 (766)
Q Consensus        99 ~~l~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  177 (766)
                               ..+|..+.++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.
T Consensus        66 ---------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           66 ---------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             ---------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ---------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc
Confidence                     04567888899999999984 88888999999999999999999999988889889999999999999999


Q ss_pred             CCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCC-CCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCC
Q 004232          178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS-TLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPK  255 (766)
Q Consensus       178 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~  255 (766)
                      +++.+|..|+++++|++|+|++|++++.+|..+..++ +|++|+|++|.+++.+|. +..++ |++|++++|        
T Consensus       137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N--------  207 (313)
T 1ogq_A          137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN--------  207 (313)
T ss_dssp             EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS--------
T ss_pred             cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC--------
Confidence            9888898899999999999999999888898888887 889999999988876664 55554 666665554        


Q ss_pred             CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEE
Q 004232          256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF  335 (766)
Q Consensus       256 ~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L  335 (766)
                                   ++++.+|..|+.+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|
T Consensus       208 -------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          208 -------------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             -------------EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             -------------cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence                         55567788899999999999999999988875 8889999999999999999999999999999999


Q ss_pred             eCcCCccccCCCCCCCCCCCCceeecCCCc-CCC
Q 004232          336 DISNNKLTGGLPSCLSNESDKRVVKFRGNC-LSS  368 (766)
Q Consensus       336 ~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~-l~~  368 (766)
                      ++++|+++|.+|.. ..+++++.+++.+|. ++|
T Consensus       274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            99999999999987 788899999999997 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-41  Score=405.80  Aligned_cols=338  Identities=26%  Similarity=0.333  Sum_probs=213.2

Q ss_pred             hcccCCCChHHHHHHHHHHHcCCCCCCCCCccCCCCCCCCCCCCCccceEecCCCEEEEEeCCCCCCCC--------CCC
Q 004232           20 PLGTHQLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNV--------GNF   91 (766)
Q Consensus        20 ~~~~~~~~~~~~~aLl~~k~~~~~~~~l~~W~~~~~~~C~~~~~~~~gv~C~~~~v~~l~l~~~~~~~~--------~~~   91 (766)
                      ..+++++.++|++||++||+++.||..+++|+.+ .|||.|.     ||+|+.++|+++++++..+.+.        ..+
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~-~~~C~w~-----gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L   76 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLPDKNLLPDWSSN-KNPCTFD-----GVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSL   76 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCSCTTSSTTCCTT-SCGGGST-----TEEEETTEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred             cCccccCCHHHHHHHHHHHhhCCCcccccCCCCC-CCCcCCc-----ceEECCCcEEEEECCCCCcCCccCccChhHhcc
Confidence            3445556788999999999999888788999854 7999985     6999988999999988765542        111


Q ss_pred             CccccccccCCCcccCCc--ccccccCCCCCCEEecccccccccCCc--cccCCCCCCEEecccccCccCCCccC-CCCC
Q 004232           92 DGFASANASLSENFSIDS--FVTTLARLTSLRVLSLVSLGIWGSLPD--KIHRLYSLEYLDLSSNFLFGSVPPKI-STMV  166 (766)
Q Consensus        92 ~~~~~~~~~l~~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~  166 (766)
                      ..+     ++..+...+.  +|..++++++|++|+|++|.+.|.+|.  .|+++++|++|||++|.+.+.+|..+ .+++
T Consensus        77 ~~L-----~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           77 TGL-----ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             TTC-----CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             Ccc-----cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence            111     1111111122  335677777777777777777776666  67777777777777777766666554 5666


Q ss_pred             CCCEEEccCCcCCCCCCcc---cCC----------------------CCCCCEEEccCccCCCCCCccccCCCCCCEEEc
Q 004232          167 KLQTLILDDNFFNNTIPNW---FDS----------------------LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDL  221 (766)
Q Consensus       167 ~L~~L~L~~N~l~~~~p~~---~~~----------------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  221 (766)
                      +|++|+|++|.+++..|..   +++                      +++|++|+|++|++++.+|. ++++++|++|+|
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L  230 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI  230 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEEC
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEEC
Confidence            6666666666666555544   444                      44445555555555544444 555555555555


Q ss_pred             cCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC-CCCCcEEEccCCcCccCCcccccCC-CCCCEEEccCCcCCCCC
Q 004232          222 SKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL-PRGLVMAFLSNNSFSGEIPKQYGQL-NQLQQLDMSFNALRGMP  298 (766)
Q Consensus       222 s~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~l~ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~  298 (766)
                      ++|.+++.+|. +..+++|++|++++|.+++.+|.. ..+|+.+++++|+++|.+|..+... ++|++|++++|++++.+
T Consensus       231 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~  310 (768)
T 3rgz_A          231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV  310 (768)
T ss_dssp             CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred             cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence            55555544442 455555555555555555544443 2456666666666666666666554 66777777777777666


Q ss_pred             ccccCCCCCCCeEEeecCcCcccCCcc-CCCCCCccEEeCcCCccccCCCCCCCCCC-CCceeecCCCcCCCC
Q 004232          299 PPAIFSLPNISDLNLASNKFSGSLPKN-LNCGGKLVFFDISNNKLTGGLPSCLSNES-DKRVVKFRGNCLSSN  369 (766)
Q Consensus       299 ~~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~~~~L~~L~ls~N~l~g~~p~~~~~~~-~l~~l~l~~N~l~~~  369 (766)
                      |..+.++++|+.|+|++|+++|.+|.. +..+++|+.|++++|+++|.+|..+..++ +++.+++++|.+++.
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~  383 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP  383 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence            666667777777777777776666654 66666777777777777666666666655 666666666666543

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=6.6e-41  Score=358.99  Aligned_cols=276  Identities=33%  Similarity=0.586  Sum_probs=216.5

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCC
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      +.+.++..++++|+..+.||+|+||.||+|+..+|+.||||++........+.+.+|+.++++++||||++++++|.+.+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            34445566789999999999999999999998889999999988766666788999999999999999999999987653


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                              ..++||||+++|+|.+++.... ....++|..+..++.+++.||+|||+.   +|+||||||+||+++.++.
T Consensus       109 --------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~  177 (321)
T 2qkw_B          109 --------EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFV  177 (321)
T ss_dssp             --------CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCC
T ss_pred             --------eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCC
Confidence                    6799999999999999997543 223589999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccc-------cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc----chHHHHh
Q 004232          632 AKLSDYGLSIVSEDINSV-------GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ----FLQEELD  697 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~-------~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~----~~~~~~~  697 (766)
                      +||+|||+++........       +.   ..++......++.++|||||||++|||+||+.|+.....    ....+..
T Consensus       178 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~  257 (321)
T 2qkw_B          178 PKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAV  257 (321)
T ss_dssp             EEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTH
T ss_pred             EEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhh
Confidence            999999998654321110       00   001101123456789999999999999999999864321    1222222


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                      ..........+.++........+....+.+++.+||+.||.+|||+.||++.|+.+...++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~~~  319 (321)
T 2qkw_B          258 ESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQES  319 (321)
T ss_dssp             HHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSCC
T ss_pred             hccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcccC
Confidence            22222334455566555555567777899999999999999999999999999999876654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=7.7e-41  Score=359.20  Aligned_cols=278  Identities=27%  Similarity=0.468  Sum_probs=219.1

Q ss_pred             ccccCHHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhh-hHHHHHHHHHHHHhCCCCCccccccee
Q 004232          470 CRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPHLVCLLGHC  548 (766)
Q Consensus       470 ~~~~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~~~~~~e~~~l~~l~Hpniv~l~g~~  548 (766)
                      .+.++++++....++|+..+.||+|+||.||+|+..+|+.||||++...... ....+.+|++++++++||||++++++|
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            4568899999999999999999999999999999888999999999765322 234689999999999999999999999


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      .+.+        ..++||||+++|+|.+++.+.. ....++|..+..++.+++.||+|||+.+.++|+||||||+||+++
T Consensus        97 ~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~  168 (326)
T 3uim_A           97 MTPT--------ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD  168 (326)
T ss_dssp             CCSS--------CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEEC
T ss_pred             ecCC--------ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEEC
Confidence            8753        5799999999999999997653 234589999999999999999999998667899999999999999


Q ss_pred             CCCcEEEecCCCCccccccccccc--CCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCcccc------Cccch
Q 004232          628 EHRIAKLSDYGLSIVSEDINSVGG--KQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAAR------KGQFL  692 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~~~~~~~~--~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~------~~~~~  692 (766)
                      .++.+||+|||++...........  ....+.       ....++.++|||||||++|||+||+.||..      .....
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  248 (326)
T 3uim_A          169 EEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML  248 (326)
T ss_dssp             TTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBH
T ss_pred             CCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhH
Confidence            999999999999975432211100  000110       112345678999999999999999999852      11223


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..+............+.++........+....+.+++.+||+.||.+|||+.||+++|+....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          249 LDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             HHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             HHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence            344443333444555666655556667778889999999999999999999999999987543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=361.07  Aligned_cols=257  Identities=17%  Similarity=0.252  Sum_probs=183.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||++++++.....-.  ..
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~--~~  131 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYG--EF  131 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTT--TC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccc--cC
Confidence            5699999999999999999985 579999999997542  344577889999999999999999999887542100  11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..+|||||||+ |+|.+++.+..   .+++.....++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~~~---~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGl  204 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHSSQ---PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGM  204 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTSSS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CEEEEEEeCCC-CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecce
Confidence            46899999996 78999997643   489999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccc--------ccccCCC--CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCc
Q 004232          640 SIVSEDIN--------SVGGKQE--DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGR  705 (766)
Q Consensus       640 a~~~~~~~--------~~~~~~~--~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~  705 (766)
                      |+......        +..++..  .|.   ....++.++||||+||++|||+||+.||....... ...+.........
T Consensus       205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~  284 (398)
T 4b99_A          205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSP  284 (398)
T ss_dssp             CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCG
T ss_pred             eeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCh
Confidence            97542211        0111111  111   11235678899999999999999999997543211 1111111100000


Q ss_pred             cc-----------ccc--ccccCCCCHHH-----HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QR-----------LVD--PVVMATSSLES-----LSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~-----------~~d--~~~~~~~~~~~-----~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..           ...  +.. .....+.     -..+.+|+.+|++.||.+|||+.|+++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          285 AVIQAVGAERVRAYIQSLPPR-QPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             GGTC-----CHHHHHHSSCCC-CCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             HHhhhhhhhhhhhhhhcCCCc-CCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            00           000  000 0001111     1346789999999999999999998753

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.1e-39  Score=353.24  Aligned_cols=191  Identities=18%  Similarity=0.298  Sum_probs=153.4

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      ....+.|++.+.||+|+||+||+|+.+    +++.||||++....  ...++.+|+++|+++ +|||||++++++.+.+ 
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~-   93 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND-   93 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT-
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC-
Confidence            344678999999999999999999742    57889999986543  235678999999998 6999999999988763 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIA  632 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~  632 (766)
                             .+|+|||||++|+|.+++.      .+++.+...++.|++.||+|||++   +|+||||||+|||++.+ +.+
T Consensus        94 -------~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~  157 (361)
T 4f9c_A           94 -------HVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKY  157 (361)
T ss_dssp             -------EEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEE
T ss_pred             -------EEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeE
Confidence                   7999999999999999884      278899999999999999999998   89999999999999976 799


Q ss_pred             EEecCCCCccccccccc-----------------------------ccCCCCCCc--------ccCCCCCCCEeehhHHH
Q 004232          633 KLSDYGLSIVSEDINSV-----------------------------GGKQEDPNS--------WEMTKLEDDVFSFGFML  675 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~-----------------------------~~~~~~~~~--------~~~~~~~~DV~SfGvil  675 (766)
                      ||+|||+|+...+....                             ....+++.+        ...++.++||||+||++
T Consensus       158 kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il  237 (361)
T 4f9c_A          158 ALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIF  237 (361)
T ss_dssp             EECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHH
T ss_pred             EECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHH
Confidence            99999999654321100                             000011111        12355678999999999


Q ss_pred             HHHhcCCCccccC
Q 004232          676 LESVAGPSVAARK  688 (766)
Q Consensus       676 ~ElltG~~p~~~~  688 (766)
                      |||+||+.||...
T Consensus       238 ~ell~G~~Pf~~~  250 (361)
T 4f9c_A          238 LSLLSGRYPFYKA  250 (361)
T ss_dssp             HHHHHTCSSSSCC
T ss_pred             HHHHHCCCCCCCC
Confidence            9999999998643

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.8e-39  Score=369.84  Aligned_cols=245  Identities=20%  Similarity=0.327  Sum_probs=189.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|++++|||||++++++.+.+        
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~--------  227 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--------  227 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS--------
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--------
Confidence            46899999999999999999985 479999999998766666788999999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--CcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH--RIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~--~~~kl~DFG  638 (766)
                      .+|||||||++|+|.+++.+..  ..+++.+...++.||+.||+|||++   +|+||||||+|||++.+  +.+||+|||
T Consensus       228 ~~~iv~E~~~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG  302 (573)
T 3uto_A          228 EMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG  302 (573)
T ss_dssp             EEEEEEECCCCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCS
T ss_pred             EEEEEEeecCCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeecc
Confidence            7999999999999999986532  2488999999999999999999998   89999999999999854  899999999


Q ss_pred             CCcccccccccc---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVG---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +|+.........   ++.    ++......++.++||||+||++|||++|+.||.....  .+.+..+....  ..+.++
T Consensus       303 ~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~--~~~~~~i~~~~--~~~~~~  378 (573)
T 3uto_A          303 LTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETLRNVKSCD--WNMDDS  378 (573)
T ss_dssp             SCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHTTC--CCCCSG
T ss_pred             ceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHhCC--CCCCcc
Confidence            998764332211   111    1111123456678999999999999999999974332  22222222111  111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      . ....+    ..+.+|+.+||+.||.+|||+.|+++
T Consensus       379 ~-~~~~s----~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          379 A-FSGIS----EDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             G-GTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             c-ccCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1 11122    23678999999999999999999876

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=6.8e-38  Score=333.15  Aligned_cols=272  Identities=29%  Similarity=0.487  Sum_probs=207.8

Q ss_pred             ccccCHHHHHHHhcCCCcC------CceecCCceeEEEEEecCCceEEEEEccCC----hhhhHHHHHHHHHHHHhCCCC
Q 004232          470 CRSFTLEELKEATNNFDMS------AIMGEGSYGKLYKGRLENGTSVAIRCLPSS----KKYTVRNLKLRLDLLAKLRHP  539 (766)
Q Consensus       470 ~~~~~~~~l~~~~~~f~~~------~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~----~~~~~~~~~~e~~~l~~l~Hp  539 (766)
                      ...|+++++..++++|...      +.||+|+||.||+|+. +++.||||++...    .....+.+.+|+.++++++||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            3568999999999999877      8899999999999986 5889999998653    233467899999999999999


Q ss_pred             CcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 004232          540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRV  619 (766)
Q Consensus       540 niv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdl  619 (766)
                      ||+++++++.+.+        ..++||||+++|+|.+++........++|..+..++.+++.||+|||+.   +|+||||
T Consensus        91 ~i~~~~~~~~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl  159 (307)
T 2nru_A           91 NLVELLGFSSDGD--------DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDI  159 (307)
T ss_dssp             TBCCEEEEECSSS--------SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred             CeEEEEEEEecCC--------ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCC
Confidence            9999999998753        5799999999999999987544445689999999999999999999997   8999999


Q ss_pred             CCCceEEcCCCcEEEecCCCCccccccccc---ccCCCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCcc
Q 004232          620 KTNNILLNEHRIAKLSDYGLSIVSEDINSV---GGKQEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ  690 (766)
Q Consensus       620 k~~NILld~~~~~kl~DFGla~~~~~~~~~---~~~~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~  690 (766)
                      ||+||+++.++.+||+|||++.........   ......+.+      ...++.++|||||||++|||+||..|+.....
T Consensus       160 kp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  239 (307)
T 2nru_A          160 KSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE  239 (307)
T ss_dssp             CGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBS
T ss_pred             CHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcc
Confidence            999999999999999999998654332110   000000000      01245688999999999999999999874321


Q ss_pred             --chHHHHhhhhcc-cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          691 --FLQEELDSLNSQ-EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       691 --~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                        ........+... ......+++.. ..........+.+++.+||+.||.+||+++||++.|+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~  305 (307)
T 2nru_A          240 PQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT  305 (307)
T ss_dssp             SSBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence              111111111111 11222333322 2234455667889999999999999999999999999874

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=8.5e-39  Score=364.32  Aligned_cols=242  Identities=21%  Similarity=0.317  Sum_probs=180.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.++||+|+||+||+|+. .+|+.||||+++....      ......+.++.+++.++|||||++++++.+.+  
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~--  265 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--  265 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC--
Confidence            46799999999999999999986 4799999999964321      11223344567788889999999999998764  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            .+|+|||||+||+|.++|.+..   .++......++.||+.||+|||+.   +||||||||+|||||.+|++||
T Consensus       266 ------~lylVmEy~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL  333 (689)
T 3v5w_A          266 ------KLSFILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRI  333 (689)
T ss_dssp             ------EEEEEECCCCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEE
T ss_pred             ------EEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEe
Confidence                  7999999999999999998654   388999999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCcccccccc--cccCCC--CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-HhhhhcccCcc
Q 004232          635 SDYGLSIVSEDINS--VGGKQE--DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-LDSLNSQEGRQ  706 (766)
Q Consensus       635 ~DFGla~~~~~~~~--~~~~~~--~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-~~~~~~~~~~~  706 (766)
                      +|||+|+.......  ..+++.  .|.   ....++.++||||+||++|||+||+.||.......... ...+...  ..
T Consensus       334 ~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~--~~  411 (689)
T 3v5w_A          334 SDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM--AV  411 (689)
T ss_dssp             CCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHC--CC
T ss_pred             cccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCC--CC
Confidence            99999976543221  111111  111   11346778999999999999999999996432221111 1111111  11


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPS-----FEDILW  748 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~  748 (766)
                      .+  |   ...+    ..+.+|+.+|++.||.+|++     ++||.+
T Consensus       412 ~~--p---~~~S----~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          412 EL--P---DSFS----PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             CC--C---TTSC----HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             CC--C---ccCC----HHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            11  1   1112    23678999999999999998     566653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.4e-38  Score=337.06  Aligned_cols=256  Identities=22%  Similarity=0.385  Sum_probs=188.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..++|++.+.||+|+||+||+|+. +|+.||||++....  ....+++.+|++++++++||||+++++++.+.+      
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~------  107 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP------  107 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT------
T ss_pred             ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC------
Confidence            456788999999999999999987 58899999986543  344678999999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+......+++..+..++.|++.||+|||+.. ++|+||||||+||+++.++.+||+|||
T Consensus       108 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg  184 (309)
T 3p86_A          108 --NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFG  184 (309)
T ss_dssp             --CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC
T ss_pred             --ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCC
Confidence              57999999999999999976543334889999999999999999999972 129999999999999999999999999


Q ss_pred             CCccccccccc----ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSV----GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~----~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +++........    .++    .++.......+.++|||||||++|||+||+.||......  .....+........+  
T Consensus       185 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~~~~~~--  260 (309)
T 3p86_A          185 LSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKCKRLEI--  260 (309)
T ss_dssp             -----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSCCCCCC--
T ss_pred             CCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCCCCCC--
Confidence            98654322110    011    111111234567899999999999999999998743321  111111111111111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                         ....+    ..+.+++.+||+.||.+|||+.||++.|+.+....
T Consensus       261 ---~~~~~----~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          261 ---PRNLN----PQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             ---CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             ---CccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence               11111    23778999999999999999999999999887543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.4e-38  Score=343.03  Aligned_cols=253  Identities=19%  Similarity=0.394  Sum_probs=192.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|++.+.||+|+||.||+|+..        ++..||||+++.. .....+.+.+|+++++++ +|||||+++++|.+.
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            467888999999999999999852        3567999999764 334567899999999999 899999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      +        ..++||||+++|+|.+++.....             ...+++..+..++.||+.||+|||+.   +|+|||
T Consensus       160 ~--------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrD  228 (370)
T 2psq_A          160 G--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRD  228 (370)
T ss_dssp             S--------SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred             C--------CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccc
Confidence            3        68999999999999999976532             23478999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc--cCCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG--GKQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~--~~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+|||++.++.+||+|||+++.........  ....      .|  .....++.++|||||||++|||+| |+.||..
T Consensus       229 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~  308 (370)
T 2psq_A          229 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG  308 (370)
T ss_dssp             CCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             cchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999997543321110  0000      01  111335567899999999999999 9999864


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ......  ...+. ......     .....+    ..+.+++.+||+.||.+||++.||++.|+.+.+..
T Consensus       309 ~~~~~~--~~~~~-~~~~~~-----~~~~~~----~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~  366 (370)
T 2psq_A          309 IPVEEL--FKLLK-EGHRMD-----KPANCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  366 (370)
T ss_dssp             CCGGGH--HHHHH-TTCCCC-----CCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHH--HHHHh-cCCCCC-----CCCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            332211  11111 111111     111111    24778999999999999999999999999987644

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=338.89  Aligned_cols=250  Identities=18%  Similarity=0.299  Sum_probs=191.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|.+.+.||+|+||+||+|+.. +++.||+|++........+.+.+|++++++++||||+++++++.+.+        .
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--------~   81 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK--------R   81 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT--------E
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCC--------e
Confidence            56888899999999999999964 68999999997777777888999999999999999999999998763        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++....  ..++|..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  156 (310)
T 3s95_A           82 LNFITEYIKGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLAR  156 (310)
T ss_dssp             EEEEEECCTTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEecCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccce
Confidence            899999999999999998643  3489999999999999999999997   89999999999999999999999999996


Q ss_pred             cccccccc-------------------c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh
Q 004232          642 VSEDINSV-------------------G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       642 ~~~~~~~~-------------------~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~  699 (766)
                      ........                   +   +..++......++.++|||||||++|||++|..|+...........   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~---  233 (310)
T 3s95_A          157 LMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG---  233 (310)
T ss_dssp             ECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS---
T ss_pred             ecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh---
Confidence            54322110                   0   0001111113456789999999999999999988753221100000   


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                         .......++......+    ..+.+++.+||+.||++|||+.||++.|+.+..
T Consensus       234 ---~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~  282 (310)
T 3s95_A          234 ---LNVRGFLDRYCPPNCP----PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM  282 (310)
T ss_dssp             ---BCHHHHHHHTCCTTCC----TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---hhhhccccccCCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence               0000001110001111    126789999999999999999999999998764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=4e-38  Score=344.29  Aligned_cols=248  Identities=24%  Similarity=0.444  Sum_probs=183.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|+..    ++..||||+++.. .....+++.+|+.++++++||||++++|+|.+.+     
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-----  119 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-----  119 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS-----
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC-----
Confidence            57889999999999999999864    5778999999764 3445678999999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++++..  ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       120 ---~~~lv~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Df  191 (373)
T 2qol_A          120 ---PVMIVTEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDF  191 (373)
T ss_dssp             ---SCEEEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC
T ss_pred             ---ceEEEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcC
Confidence               6799999999999999997643  3589999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccccc-----C----CCCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSVGG-----K----QEDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~~~-----~----~~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |+++..........     .    ...|  .....++.++|||||||++|||++ |+.|+.....  ......+.. .  
T Consensus       192 g~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~--~~~~~~i~~-~--  266 (373)
T 2qol_A          192 GLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN--QDVIKAVDE-G--  266 (373)
T ss_dssp             ----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH--HHHHHHHHT-T--
T ss_pred             ccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-C--
Confidence            99976543211100     0    0001  111345667899999999999998 9999864322  111111111 1  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....+   ..    ....+.+++.+||+.||.+||+|.||+++|+.+..
T Consensus       267 ~~~~~~---~~----~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~  309 (373)
T 2qol_A          267 YRLPPP---MD----CPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR  309 (373)
T ss_dssp             EECCCC---TT----CBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCC---cc----ccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence            011011   11    12347789999999999999999999999998875

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=1.2e-38  Score=349.26  Aligned_cols=249  Identities=24%  Similarity=0.438  Sum_probs=190.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|.+.+.||+|+||.||+|+.. +++.||||.++... ....+++.+|+++|++++|||||+++|+|.+.+       
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-------  185 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-------  185 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS-------
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC-------
Confidence            467888899999999999999975 78999999987542 334567889999999999999999999997653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.++++...  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       186 -~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~  259 (377)
T 3cbl_A          186 -PIYIVMELVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGM  259 (377)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred             -CcEEEEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCC
Confidence             5799999999999999997543  2488999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc--cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccc
Q 004232          640 SIVSEDINSVG--GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       640 a~~~~~~~~~~--~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ++.........  .....+..|        ..++.++|||||||++|||+| |+.|+........   ........  ..
T Consensus       260 s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~---~~~~~~~~--~~  334 (377)
T 3cbl_A          260 SREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQT---REFVEKGG--RL  334 (377)
T ss_dssp             CEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHH---HHHHHTTC--CC
T ss_pred             ceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH---HHHHHcCC--CC
Confidence            97543221110  000001112        223457899999999999999 8999864332111   11111111  11


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..|.   ..+    ..+.+++.+||+.||.+||||++|++.|+.+..
T Consensus       335 ~~~~---~~~----~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          335 PCPE---LCP----DAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             CCCT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCC---CCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            1111   111    246789999999999999999999999998864

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=337.23  Aligned_cols=251  Identities=24%  Similarity=0.431  Sum_probs=190.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|+..    .+..||||+++.. .....+.+.+|+.++++++||||++++++|.+.+     
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----  123 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR-----  123 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGG-----
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC-----
Confidence            56888899999999999999974    3456999999764 3445678999999999999999999999997653     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.++++...  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus       124 ---~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Df  195 (325)
T 3kul_A          124 ---LAMIVTEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDF  195 (325)
T ss_dssp             ---CCEEEEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred             ---ccEEEeeCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCC
Confidence               6799999999999999997543  3489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc---cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSVG---GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~~---~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |+++.........   .....+..+        ..++.++|||||||++|||++ |+.||.....  ......+...   
T Consensus       196 g~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~~~~~~~---  270 (325)
T 3kul_A          196 GLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN--RDVISSVEEG---  270 (325)
T ss_dssp             SSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH--HHHHHHHHTT---
T ss_pred             CcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHcC---
Confidence            9997653321110   000000011        234557899999999999999 9999864322  1112222111   


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      .....+   ...+    ..+.+++.+||+.||.+||++.||++.|+.+....+
T Consensus       271 ~~~~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          271 YRLPAP---MGCP----HALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             CCCCCC---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCC---CCcC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence            011111   1111    247789999999999999999999999999876443

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=9.6e-39  Score=337.77  Aligned_cols=253  Identities=22%  Similarity=0.383  Sum_probs=189.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|++     .+++.||||++........+.+.+|++++++++||||++++++|...+.    
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~----   85 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR----   85 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH----
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC----
Confidence            5688899999999999999985     3688999999987777777889999999999999999999999876431    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        86 --~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Df  158 (295)
T 3ugc_A           86 --RNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDF  158 (295)
T ss_dssp             --TSCEEEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCC
T ss_pred             --CceEEEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccC
Confidence              25799999999999999997653  2488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc---ccCCC------CC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH----------
Q 004232          638 GLSIVSEDINSV---GGKQE------DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL----------  696 (766)
Q Consensus       638 Gla~~~~~~~~~---~~~~~------~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~----------  696 (766)
                      |++.........   .....      .|  .....++.++|||||||++|||+||..|+...........          
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  238 (295)
T 3ugc_A          159 GLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIV  238 (295)
T ss_dssp             CSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHH
T ss_pred             cccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhH
Confidence            999764322110   00000      11  1113456688999999999999999888753211111100          


Q ss_pred             ---hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          697 ---DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       697 ---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                         ........  ....+   ..    ....+.+++.+||+.||.+|||+.||+++|+.+..
T Consensus       239 ~~~~~~~~~~~--~~~~~---~~----~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~  291 (295)
T 3ugc_A          239 FHLIELLKNNG--RLPRP---DG----CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  291 (295)
T ss_dssp             HHHHHHHHTTC--CCCCC---TT----CCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccC--cCCCC---cC----cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence               00000000  00001   11    12347789999999999999999999999998763

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2.4e-37  Score=331.30  Aligned_cols=253  Identities=22%  Similarity=0.328  Sum_probs=193.3

Q ss_pred             ccCHHHHHHHhcC----------CCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCC
Q 004232          472 SFTLEELKEATNN----------FDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH  540 (766)
Q Consensus       472 ~~~~~~l~~~~~~----------f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpn  540 (766)
                      .++.++++.+++.          |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++|||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            4678888887764          666778999999999999975 79999999997665556678999999999999999


Q ss_pred             cccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCC
Q 004232          541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVK  620 (766)
Q Consensus       541 iv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk  620 (766)
                      |++++++|...+        ..++||||+++|+|.+++.+.    .+++..+..++.+++.||+|||+.   +|+|||||
T Consensus       104 iv~~~~~~~~~~--------~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlk  168 (321)
T 2c30_A          104 VVEMYKSYLVGE--------ELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIK  168 (321)
T ss_dssp             BCCEEEEEEETT--------EEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCS
T ss_pred             cceEEEEEEECC--------EEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCC
Confidence            999999998763        689999999999999988643    389999999999999999999997   89999999


Q ss_pred             CCceEEcCCCcEEEecCCCCcccccccccc----cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch
Q 004232          621 TNNILLNEHRIAKLSDYGLSIVSEDINSVG----GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL  692 (766)
Q Consensus       621 ~~NILld~~~~~kl~DFGla~~~~~~~~~~----~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~  692 (766)
                      |+||+++.++.+||+|||++..........    ++    .++......++.++|||||||++|||+||+.|+...... 
T Consensus       169 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~-  247 (321)
T 2c30_A          169 SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV-  247 (321)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-
T ss_pred             HHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence            999999999999999999986543321110    00    011111233566889999999999999999998643321 


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       .....+... ....+..+.   ..+    ..+.+++.+||+.||.+|||+.||++.
T Consensus       248 -~~~~~~~~~-~~~~~~~~~---~~~----~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          248 -QAMKRLRDS-PPPKLKNSH---KVS----PVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             -HHHHHHHHS-SCCCCTTGG---GSC----HHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             -HHHHHHhcC-CCCCcCccc---cCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             111111111 111111110   111    236788999999999999999999864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2e-37  Score=328.19  Aligned_cols=243  Identities=20%  Similarity=0.342  Sum_probs=187.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|+.++++++||||+++++++.+.+        
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--------   90 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--------   90 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--------
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC--------
Confidence            46799999999999999999984 579999999987655555678899999999999999999999998764        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+.    .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  163 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence            789999999999999999764    378999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccccc----C----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          641 IVSEDINSVGG----K----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       641 ~~~~~~~~~~~----~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ...........    +    .++......++.++|||||||++|||+||+.||......  .....+.... ......+.
T Consensus       164 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~~~~~~-~~~~~~~~  240 (297)
T 3fxz_A          164 AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL--RALYLIATNG-TPELQNPE  240 (297)
T ss_dssp             EECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHHC-SCCCSCGG
T ss_pred             eecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCC-CCCCCCcc
Confidence            65433211111    0    011111234567899999999999999999998643321  1111111111 11111111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ..    ...+.+++.+||+.||.+|||++|+++.
T Consensus       241 ---~~----~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          241 ---KL----SAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             ---GS----CHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ---cc----CHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence               11    1236789999999999999999999763

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.8e-37  Score=332.52  Aligned_cols=262  Identities=17%  Similarity=0.309  Sum_probs=190.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||+||+|+.. ++.||||+++.... ....+++|+.++++++|||||++++++.+....    ...
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~----~~~   96 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSV----DVD   96 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSS----SEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCC----Cce
Confidence            467889999999999999999875 78999999965433 344566799999999999999999999875421    135


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-------CCCCcccCCCCCCceEEcCCCcEEE
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG-------VIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-------~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                      +++||||+++|+|.+++++.    .++|..+..++.|++.||+|||+.       +.++|+||||||+|||++.++.+||
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL  172 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACI  172 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEE
T ss_pred             EEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEE
Confidence            79999999999999999764    389999999999999999999985       1237999999999999999999999


Q ss_pred             ecCCCCcccccccccccC--CCCCCccc-------------CCCCCCCEeehhHHHHHHhcCCCccccCccc--------
Q 004232          635 SDYGLSIVSEDINSVGGK--QEDPNSWE-------------MTKLEDDVFSFGFMLLESVAGPSVAARKGQF--------  691 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~~~--~~~~~~~~-------------~~~~~~DV~SfGvil~ElltG~~p~~~~~~~--------  691 (766)
                      +|||+++...........  ......|.             .++.++|||||||++|||+||+.||......        
T Consensus       173 ~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~  252 (322)
T 3soc_A          173 ADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEE  252 (322)
T ss_dssp             CCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHH
T ss_pred             ccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhh
Confidence            999999654332211000  00001111             1223569999999999999999998642110        


Q ss_pred             -----hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          692 -----LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       692 -----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                           ....+.................   ........+.+++.+||+.||.+|||+.||++.|+.+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          253 IGQHPSLEDMQEVVVHKKKRPVLRDYW---QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HCSSCCHHHHHHHHTTSCCCCCCCGGG---GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hccCCchhhhhhhhhcccCCCCccccc---cccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                 0011111111111111111100   1123445688999999999999999999999999998754

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2.4e-37  Score=331.95  Aligned_cols=241  Identities=20%  Similarity=0.306  Sum_probs=185.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+++|++++||||+++++++.+.+      
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~------   87 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEK------   87 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS------
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC------
Confidence            46799999999999999999986 57999999998654  3345677889999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        88 --~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG  159 (328)
T 3fe3_A           88 --TLYLIMEYASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFG  159 (328)
T ss_dssp             --EEEEEECCCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTT
T ss_pred             --EEEEEEECCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeecc
Confidence              7899999999999999997653   388999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccccCCCC-----CC--cccC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          639 LSIVSEDINSVGGKQED-----PN--SWEM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       639 la~~~~~~~~~~~~~~~-----~~--~~~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ++...............     |.  .... .+.++|||||||++|||+||+.||.....  ......+....  ..+  
T Consensus       160 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~~--~~~--  233 (328)
T 3fe3_A          160 FSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL--KELRERVLRGK--YRI--  233 (328)
T ss_dssp             CCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCC--
T ss_pred             CceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCC--
Confidence            99654332211111111     11  0111 23578999999999999999999974332  22122221111  111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      |.   ..+    ..+.+++.+|++.||.+|||++|+++.
T Consensus       234 p~---~~s----~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          234 PF---YMS----TDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             CT---TSC----HHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             CC---CCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            11   111    236789999999999999999999764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.5e-37  Score=324.05  Aligned_cols=247  Identities=23%  Similarity=0.422  Sum_probs=191.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|+..++..||||++..... ..+++.+|++++++++||||+++++++.+.+        ..
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------~~   80 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--------PI   80 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--------SE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--------ce
Confidence            56888899999999999999988889999999976432 3467899999999999999999999998753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           81 CLVFEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEEEECCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEEeCCCCcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccc
Confidence            99999999999999997543  3488999999999999999999997   899999999999999999999999999975


Q ss_pred             cccccccc--c-------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG--G-------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~--~-------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........  .       ..++......++.++|||||||++|||+| |+.|+......  .....+...   .....+.
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~---~~~~~~~  230 (269)
T 4hcu_A          156 VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTG---FRLYKPR  230 (269)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTT---CCCCCCT
T ss_pred             ccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcC---ccCCCCC
Confidence            43321110  0       00110111345668899999999999999 89998643321  112222111   1111111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                         ..+    ..+.+++.+||+.||.+||++.|+++.|+++.+
T Consensus       231 ---~~~----~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          231 ---LAS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             ---TSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---cCC----HHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence               111    236789999999999999999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.6e-37  Score=346.59  Aligned_cols=249  Identities=22%  Similarity=0.405  Sum_probs=190.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|++. |+.||||+++...  ..+.|.+|+.+|++++|||||+++|+|.+..       ..
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------~~  261 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-------GG  261 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTT-------SC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCC-------Cc
Confidence            456888899999999999999875 7899999997654  4577999999999999999999999988753       25


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++++.. ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       262 ~~iv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          262 LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC-TTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEecCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcc
Confidence            899999999999999998653 23478999999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccccCC---CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          642 VSEDINSVGGKQ---EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       642 ~~~~~~~~~~~~---~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ............   ..|  .....++.++|||||||++|||+| |+.|+........  ...+. .+.  +...|   .
T Consensus       338 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--~~~i~-~~~--~~~~p---~  409 (450)
T 1k9a_A          338 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVE-KGY--KMDAP---D  409 (450)
T ss_dssp             ECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH--HHHHH-TTC--CCCCC---T
T ss_pred             cccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHH-cCC--CCCCC---C
Confidence            543221111100   011  112345668999999999999999 9999874332111  11111 111  11111   1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ..    ...+.+++.+||+.||.+||||.||++.|+.+...
T Consensus       410 ~~----~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          410 GC----PPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             TC----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            11    23477899999999999999999999999988653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-37  Score=364.80  Aligned_cols=312  Identities=19%  Similarity=0.293  Sum_probs=235.0

Q ss_pred             ChHHHHHHHHHHHcCCCCC---------CCCCccCCCCCCCCCCCCCccceEec-CCCEEEEEeCCCCCCCCCCCCcccc
Q 004232           27 QSSQTQVLLQLRKHLEYPK---------QLEIWINHGADFCYISSSTQVNITCQ-DNFITELKIIGDKPSNVGNFDGFAS   96 (766)
Q Consensus        27 ~~~~~~aLl~~k~~~~~~~---------~l~~W~~~~~~~C~~~~~~~~gv~C~-~~~v~~l~l~~~~~~~~~~~~~~~~   96 (766)
                      ...|++||.+|+.++..+.         ...+|+.+ .+||.|.  .+.||+|+ .++|++|++.+..+.          
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~--~~~GV~C~~~~~V~~L~L~~~~l~----------   94 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWG--AQPGVSLNSNGRVTGLSLEGFGAS----------   94 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTT--CCTTEEECTTCCEEEEECTTSCCE----------
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCccccc--CCCCeEEcCCCCEEEEEecCcccC----------
Confidence            3479999999999986542         24579865 7999983  24579995 479999998765432          


Q ss_pred             ccccCCCcccCCcccccccCCCCCCEEecccc------------------------------------------------
Q 004232           97 ANASLSENFSIDSFVTTLARLTSLRVLSLVSL------------------------------------------------  128 (766)
Q Consensus        97 ~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n------------------------------------------------  128 (766)
                                 +.+|+++++|++|++|+|++|                                                
T Consensus        95 -----------g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~  163 (636)
T 4eco_A           95 -----------GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK  163 (636)
T ss_dssp             -----------EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred             -----------CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence                       345667778888888888777                                                


Q ss_pred             ------------------------------cccccCCccccCCCCCCEEecccccCccC-----------------CCcc
Q 004232          129 ------------------------------GIWGSLPDKIHRLYSLEYLDLSSNFLFGS-----------------VPPK  161 (766)
Q Consensus       129 ------------------------------~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~-----------------~p~~  161 (766)
                                                    +++| +|+.|+++++|++|+|++|.++|.                 +|+.
T Consensus       164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~  242 (636)
T 4eco_A          164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED  242 (636)
T ss_dssp             HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence                                          3445 777788888888888888888775                 7888


Q ss_pred             CC--CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCcc-CCC-CCCccccCC------CCCCEEEccCCccCCCCC
Q 004232          162 IS--TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNK-LAG-PFPSSIQRI------STLSDLDLSKNAISGSLP  231 (766)
Q Consensus       162 ~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p  231 (766)
                      ++  ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ ++| .+|..++.+      ++|++|+|++|+++ .+|
T Consensus       243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip  321 (636)
T 4eco_A          243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP  321 (636)
T ss_dssp             CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred             hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence            77  88888888888888888888888888888888888887 777 778777766      78888888888888 455


Q ss_pred             C---CCCCCCCCEEECCCCCCCCCCCCCC--CCCcEEEccCCcCccCCcccccCCCC-CCEEEccCCcCCCCCccccCCC
Q 004232          232 D---LSSLGSLNVLNLSDNKLDSNLPKLP--RGLVMAFLSNNSFSGEIPKQYGQLNQ-LQQLDMSFNALRGMPPPAIFSL  305 (766)
Q Consensus       232 ~---~~~l~~L~~L~ls~N~l~~~~p~~~--~~l~~l~ls~N~l~~~~p~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~l  305 (766)
                      .   ++.+++|++|++++|+++|.+|.+.  .+|+.|++++|+++ .+|..++.+++ |+.|++++|+++. +|..+..+
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~  399 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK  399 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTT
T ss_pred             chhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhc
Confidence            4   7788888888888888887777332  46777888888887 67777888887 8888888888884 44455554


Q ss_pred             C--CCCeEEeecCcCcccCCccCC-------CCCCccEEeCcCCccccCCCCC-CCCCCCCceeecCCCcCC
Q 004232          306 P--NISDLNLASNKFSGSLPKNLN-------CGGKLVFFDISNNKLTGGLPSC-LSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       306 ~--~L~~L~L~~N~l~g~~p~~~~-------~~~~L~~L~ls~N~l~g~~p~~-~~~~~~l~~l~l~~N~l~  367 (766)
                      +  +|+.|+|++|++++.+|..+.       .+.+|+.|++++|+++ .+|.. +..+++|+.|++++|.++
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            4  788888888888887777777       6677888888888887 44543 345677888888888776

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.9e-37  Score=326.20  Aligned_cols=267  Identities=18%  Similarity=0.224  Sum_probs=196.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.|.+.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+...      .
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~------~   82 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTT------R   82 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTT------C
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCC------c
Confidence            56888999999999999999965 58999999997543 2345778899999999999999999999886542      2


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEec
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL----NEHRIAKLSD  636 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----d~~~~~kl~D  636 (766)
                      ..++||||+++|+|.+++........+++..+..++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (319)
T 4euu_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (319)
T ss_dssp             CEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECC
T ss_pred             eEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEcc
Confidence            6799999999999999998654444589999999999999999999997   89999999999999    7788899999


Q ss_pred             CCCCccccccccccc---CC--CCCCc----------ccCCCCCCCEeehhHHHHHHhcCCCccccCc--cchHHHHhhh
Q 004232          637 YGLSIVSEDINSVGG---KQ--EDPNS----------WEMTKLEDDVFSFGFMLLESVAGPSVAARKG--QFLQEELDSL  699 (766)
Q Consensus       637 FGla~~~~~~~~~~~---~~--~~~~~----------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~--~~~~~~~~~~  699 (766)
                      ||+++..........   +.  ..|..          ...++.++|||||||++|||+||+.||....  ......+..+
T Consensus       160 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~  239 (319)
T 4euu_A          160 FGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (319)
T ss_dssp             CTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred             CCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence            999976543221111   10  01110          2345678999999999999999999986322  1112222221


Q ss_pred             hcccC---ccccc---------ccc--ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          700 NSQEG---RQRLV---------DPV--VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       700 ~~~~~---~~~~~---------d~~--~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      .....   ...+.         .+.  ............+.+++.+|++.||++|||++|+++..++.+...+
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~~~  312 (319)
T 4euu_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRGN  312 (319)
T ss_dssp             HHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC---
T ss_pred             hcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhcCC
Confidence            11110   00000         000  0112234455668899999999999999999999999888654433

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=7.2e-38  Score=340.66  Aligned_cols=263  Identities=22%  Similarity=0.348  Sum_probs=196.9

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccc
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCL  544 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l  544 (766)
                      +...++....++|++.+.||+|+||.||+|++      .+++.||||+++... ....+.+.+|+++++++ +|||||++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            34455666778899999999999999999973      346889999997643 34457899999999999 79999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC-----------------------------------------
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-----------------------------------------  583 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-----------------------------------------  583 (766)
                      +|+|.+.+       ...++||||+++|+|.++++....                                         
T Consensus        92 ~~~~~~~~-------~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (359)
T 3vhe_A           92 LGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSAS  164 (359)
T ss_dssp             EEEECSTT-------SCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------
T ss_pred             eeeeecCC-------CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccc
Confidence            99998754       247999999999999999976432                                         


Q ss_pred             ----------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          584 ----------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       584 ----------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                                            ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  241 (359)
T 3vhe_A          165 SGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLAR  241 (359)
T ss_dssp             -------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGS
T ss_pred             cccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEecccee
Confidence                                  11288999999999999999999997   89999999999999999999999999996


Q ss_pred             cccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          642 VSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       642 ~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ........   .       +..++......++.++|||||||++|||+| |+.||.......  ..............  
T Consensus       242 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~~~~~~~~~~~--  317 (359)
T 3vhe_A          242 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE--EFCRRLKEGTRMRA--  317 (359)
T ss_dssp             CTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH--HHHHHHHHTCCCCC--
T ss_pred             eecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH--HHHHHHHcCCCCCC--
Confidence            54221110   0       000110112345668899999999999999 999986432211  11111111111111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      +   ...+    ..+.+++.+||+.||.+|||+.||+++|+.+.+.
T Consensus       318 ~---~~~~----~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          318 P---DYTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C---CCCC----HHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            1   1111    2377889999999999999999999999988753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=5e-38  Score=352.87  Aligned_cols=252  Identities=20%  Similarity=0.379  Sum_probs=193.4

Q ss_pred             HHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          478 LKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       478 l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      +....++|++.+.||+|+||.||+|+..++..||||+++... ...+.|.+|+.+|++++|||||++++++.+.      
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~------  255 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKE------  255 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSS------
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCC------
Confidence            334456788899999999999999999888999999997643 3467899999999999999999999998632      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.++++... ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       256 ---~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DF  328 (454)
T 1qcf_A          256 ---PIYIITEFMAKGSLLDFLKSDE-GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADF  328 (454)
T ss_dssp             ---SCEEEECCCTTCBHHHHHHSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECST
T ss_pred             ---ccEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeC
Confidence               5799999999999999997532 12478899999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc-cCCCCCC--------cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINSVG-GKQEDPN--------SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~~~-~~~~~~~--------~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |+++......... .....+.        ....++.++|||||||++|||+| |+.||.....  .+....+.. .  ..
T Consensus       329 G~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~-~--~~  403 (454)
T 1qcf_A          329 GLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIRALER-G--YR  403 (454)
T ss_dssp             TGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHH-T--CC
T ss_pred             CCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-C--CC
Confidence            9997654321110 0000111        11345668899999999999999 9999864322  111111111 1  11


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ...|.   ..    ...+.+++.+||+.||.+||||++|++.|+.+..
T Consensus       404 ~~~~~---~~----~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          404 MPRPE---NC----PEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             CCCCT---TS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             CCCCC---CC----CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence            11111   11    2347789999999999999999999999998754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=326.73  Aligned_cols=250  Identities=20%  Similarity=0.336  Sum_probs=185.4

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|+.. ++.||||++...  ...+.+.+|++++++++||||++++|++.+          ..
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----------~~   74 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN----------PV   74 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT----------TT
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC----------Cc
Confidence            46788899999999999999875 788999998654  345788999999999999999999998864          35


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-EEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI-AKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~-~kl~DFGla~  641 (766)
                      ++||||+++|+|.+++........+++..++.++.++++||+|||+.+..+|+||||||+||+++.++. +||+|||++.
T Consensus        75 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           75 CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             EEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             EEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            899999999999999986554345788999999999999999999943338999999999999998876 8999999986


Q ss_pred             cccccccc--cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          642 VSEDINSV--GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       642 ~~~~~~~~--~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ........  +.   ..++......++.++|||||||++|||+||+.|+................ .....     ....
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~~~~~-----~~~~  228 (307)
T 2eva_A          155 DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHN-GTRPP-----LIKN  228 (307)
T ss_dssp             ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHT-TCCCC-----CBTT
T ss_pred             ccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhc-CCCCC-----cccc
Confidence            54321111  11   11111112345678999999999999999999987433222221111111 11111     1111


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .+    ..+.+++.+||+.||.+|||++||++.|+.+.+
T Consensus       229 ~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  263 (307)
T 2eva_A          229 LP----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMR  263 (307)
T ss_dssp             CC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGG
T ss_pred             cC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            12    236789999999999999999999999998875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-37  Score=367.86  Aligned_cols=330  Identities=18%  Similarity=0.227  Sum_probs=171.7

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCccCCC----CCC--CCCC-------CCCccceEec-CCCEEEEEeCCCCCCCC--
Q 004232           25 QLQSSQTQVLLQLRKHLEYPKQLEIWINHG----ADF--CYIS-------SSTQVNITCQ-DNFITELKIIGDKPSNV--   88 (766)
Q Consensus        25 ~~~~~~~~aLl~~k~~~~~~~~l~~W~~~~----~~~--C~~~-------~~~~~gv~C~-~~~v~~l~l~~~~~~~~--   88 (766)
                      ++...|++||++||+++.+|    +|+.++    .+|  |.|.       +....||+|+ .++|++|++.+..+.|.  
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred             ccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence            34468999999999999887    797653    367  9981       1112689997 58999999987654431  


Q ss_pred             ---CCCCccccccccC-CCc------------------------------------------------------------
Q 004232           89 ---GNFDGFASANASL-SEN------------------------------------------------------------  104 (766)
Q Consensus        89 ---~~~~~~~~~~~~l-~~n------------------------------------------------------------  104 (766)
                         +++..+..+  ++ +.|                                                            
T Consensus       341 ~~l~~L~~L~~L--dLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          341 DAIGQLTELKVL--SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             GGGGGCTTCCEE--ESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             hHHhccccceEe--eecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence               111111110  11 111                                                            


Q ss_pred             -----------------ccCCcccccccCCCCCCEEecccccccc-----------------cCCcccc--CCCCCCEEe
Q 004232          105 -----------------FSIDSFVTTLARLTSLRVLSLVSLGIWG-----------------SLPDKIH--RLYSLEYLD  148 (766)
Q Consensus       105 -----------------~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~L~~L~~L~  148 (766)
                                       ...+ +|..+++|++|++|+|++|.|+|                 .+|+.++  ++++|++|+
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~  497 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE  497 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence                             0001 45555555555555555555555                 2555544  555555555


Q ss_pred             cccccCccCCCccCCCCCCCCEEEccCCc-CCC-CCCcccCCCC-------CCCEEEccCccCCCCCCc--cccCCCCCC
Q 004232          149 LSSNFLFGSVPPKISTMVKLQTLILDDNF-FNN-TIPNWFDSLP-------SLTFLSMRNNKLAGPFPS--SIQRISTLS  217 (766)
Q Consensus       149 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~  217 (766)
                      |++|++.+.+|..|++|++|++|+|++|+ +++ .+|..+++++       +|++|+|++|+++ .+|.  .++++++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            55555555555555555555555555554 554 4454333332       5555555555555 4555  555555555


Q ss_pred             EEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CC--CC-CcEEEccCCcCccCCcccccCCCC--CCEEEccC
Q 004232          218 DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-LP--RG-LVMAFLSNNSFSGEIPKQYGQLNQ--LQQLDMSF  291 (766)
Q Consensus       218 ~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-~~--~~-l~~l~ls~N~l~~~~p~~~~~l~~--L~~L~ls~  291 (766)
                      .|+|++|.++ .+|.++.+++|+.|+|++|+++ .+|. +.  .. |+.|+|++|+++ .+|..++.++.  |+.|+|++
T Consensus       577 ~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          577 LLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             EEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred             EEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence            5555555555 4445555555555555555555 3332 11  22 555555555555 44554444432  55555555


Q ss_pred             CcCCCCCcccc---C--CCCCCCeEEeecCcCcccCCccC-CCCCCccEEeCcCCccccCCCCCCCCC--------CCCc
Q 004232          292 NALRGMPPPAI---F--SLPNISDLNLASNKFSGSLPKNL-NCGGKLVFFDISNNKLTGGLPSCLSNE--------SDKR  357 (766)
Q Consensus       292 N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~g~~p~~~-~~~~~L~~L~ls~N~l~g~~p~~~~~~--------~~l~  357 (766)
                      |++++.+|...   .  .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+...        ++|+
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~  731 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT  731 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence            55555443211   1  2234555555555555 344332 24455555555555555 344333221        1455


Q ss_pred             eeecCCCcCC
Q 004232          358 VVKFRGNCLS  367 (766)
Q Consensus       358 ~l~l~~N~l~  367 (766)
                      .|++++|.++
T Consensus       732 ~L~Ls~N~L~  741 (876)
T 4ecn_A          732 TIDLRFNKLT  741 (876)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCc
Confidence            5555555554

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=7e-37  Score=324.18  Aligned_cols=253  Identities=17%  Similarity=0.310  Sum_probs=182.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHh--CCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAK--LRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~--l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|+. +|+.||||++...   ..+.+.+|.+++..  ++||||+++++++.+...    ..
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~----~~   78 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRH----SS   78 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEET----TE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccC----CC
Confidence            46788999999999999999987 6899999998653   23455566666666  799999999999876421    11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCcccCCCCCCceEEcCCCc
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH--------TGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      ...++||||+++|+|.++++..    .+++..+..++.|++.||+|||        +.   +|+||||||+|||++.++.
T Consensus        79 ~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~  151 (301)
T 3q4u_A           79 TQLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQ  151 (301)
T ss_dssp             EEEEEEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSC
T ss_pred             ceeEEehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCC
Confidence            3589999999999999999643    4899999999999999999999        54   8999999999999999999


Q ss_pred             EEEecCCCCccccccccc---------ccCC-CCCCccc--------CCCCCCCEeehhHHHHHHhcC----------CC
Q 004232          632 AKLSDYGLSIVSEDINSV---------GGKQ-EDPNSWE--------MTKLEDDVFSFGFMLLESVAG----------PS  683 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~---------~~~~-~~~~~~~--------~~~~~~DV~SfGvil~ElltG----------~~  683 (766)
                      +||+|||+++........         ++.. ..|....        .++.++|||||||++|||+||          +.
T Consensus       152 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~  231 (301)
T 3q4u_A          152 CCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKP  231 (301)
T ss_dssp             EEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred             EEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccc
Confidence            999999999654322111         0000 0111000        112468999999999999999          77


Q ss_pred             ccccCc--cchHHHHhhhhccc-CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          684 VAARKG--QFLQEELDSLNSQE-GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       684 p~~~~~--~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      ||....  .............. ....+...    .........+.+++.+||+.||.+|||+.||++.|+++
T Consensus       232 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          232 PFYDVVPNDPSFEDMRKVVCVDQQRPNIPNR----WFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             TTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG----GGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cccccCCCCcchhhhhHHHhccCCCCCCChh----hccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            764321  11111112111111 11111110    11223456688999999999999999999999999875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.2e-37  Score=332.56  Aligned_cols=247  Identities=21%  Similarity=0.335  Sum_probs=183.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|++.+.||+|+||.||+|+.. +++    .||+|.+.... ....+++.+|+.++++++||||++++++|.+.     
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----   89 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   89 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-----
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----
Confidence            56888899999999999999853 444    36888885432 34467899999999999999999999999874     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++|+||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus        90 ----~~~~v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~D  160 (327)
T 3poz_A           90 ----TVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITD  160 (327)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ----CeEEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEcc
Confidence                4689999999999999998653  3489999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccccc--CCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSVGG--KQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~~~--~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++..........  ...      .|  .....++.++|||||||++|||+| |+.||............   .... 
T Consensus       161 fg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~---~~~~-  236 (327)
T 3poz_A          161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL---EKGE-  236 (327)
T ss_dssp             TTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH---HTTC-
T ss_pred             CcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHH---HcCC-
Confidence            999976432211100  000      01  111345668899999999999999 99998754332221111   1111 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....+.   .    ....+.+++.+||+.||.+||+|.||+++|+.+..
T Consensus       237 -~~~~~~---~----~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          237 -RLPQPP---I----CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -CCCCCT---T----BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             -CCCCCc---c----CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence             111111   1    11247789999999999999999999999998764

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=333.12  Aligned_cols=253  Identities=21%  Similarity=0.403  Sum_probs=192.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|.+.+.||+|+||.||+|+..        .+..||||+++.. .....+++.+|+++++++ +|||||+++++|.+.
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            467888999999999999999852        3457999999764 344567899999999999 999999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      +        ..++||||+++|+|.+++.....             ...+++..+..++.|++.||+|||+.   +|+|||
T Consensus       148 ~--------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~D  216 (382)
T 3tt0_A          148 G--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRD  216 (382)
T ss_dssp             S--------SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred             C--------ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCC
Confidence            3        57999999999999999976532             23589999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc--cCC------CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG--GKQ------EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~--~~~------~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+|||++.++.+||+|||+++.........  ...      ..|  .....++.++|||||||++|||+| |..|+..
T Consensus       217 lkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~  296 (382)
T 3tt0_A          217 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG  296 (382)
T ss_dssp             CCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             CCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999997543321110  000      011  111334567899999999999999 9999864


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ...  ......+.. ......  +   ...+    ..+.+++.+||+.||.+|||++||++.|+.+....
T Consensus       297 ~~~--~~~~~~~~~-~~~~~~--~---~~~~----~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  354 (382)
T 3tt0_A          297 VPV--EELFKLLKE-GHRMDK--P---SNCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT  354 (382)
T ss_dssp             CCH--HHHHHHHHT-TCCCCC--C---SSCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             CCH--HHHHHHHHc-CCCCCC--C---ccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            322  111111111 111111  1   1112    23778999999999999999999999999987644

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.2e-37  Score=325.21  Aligned_cols=248  Identities=22%  Similarity=0.378  Sum_probs=188.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|+..++..||||+++.... ..+++.+|++++++++||||+++++++.+..        .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------~   93 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--------P   93 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--------S
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCC--------C
Confidence            457888999999999999999998888999999976432 3467899999999999999999999997653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        94 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~  168 (283)
T 3gen_A           94 IFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSR  168 (283)
T ss_dssp             EEEEECCCTTCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGG
T ss_pred             eEEEEeccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccc
Confidence            899999999999999997632  2488999999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccc--c-------CCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVG--G-------KQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~--~-------~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .........  .       ..++......++.++|||||||++|||+| |+.||......  .....+.. .  .....+
T Consensus       169 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~-~--~~~~~~  243 (283)
T 3gen_A          169 YVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQ-G--LRLYRP  243 (283)
T ss_dssp             GBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHT-T--CCCCCC
T ss_pred             cccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHHHhc-c--cCCCCC
Confidence            543321110  0       00100111345567899999999999999 99998643321  11111111 1  011111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .   ..+    ..+.+++.+||+.||.+|||++|+++.|+++..
T Consensus       244 ~---~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          244 H---LAS----EKVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             T---TCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             C---cCC----HHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            1   111    237789999999999999999999999998764

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=338.41  Aligned_cols=253  Identities=23%  Similarity=0.391  Sum_probs=189.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.+.||+|+||+||+|++.      ++..||||+++.. ......++.+|+.++++++|||||++++++.+..  
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--  147 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  147 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--
Confidence            356888999999999999999843      4678999999754 3445567899999999999999999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                            ..++||||+++|+|.+++.....    ...+++..++.++.||+.||+|||+.   +|+||||||+|||++.++
T Consensus       148 ------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~  218 (367)
T 3l9p_A          148 ------PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPG  218 (367)
T ss_dssp             ------SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSS
T ss_pred             ------CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCC
Confidence                  57999999999999999976431    23488999999999999999999997   899999999999999554


Q ss_pred             ---cEEEecCCCCcccccccc--cc--------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          631 ---IAKLSDYGLSIVSEDINS--VG--------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       631 ---~~kl~DFGla~~~~~~~~--~~--------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                         .+||+|||+++.......  ..        +..++......++.++|||||||++|||+| |..||......  ...
T Consensus       219 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~  296 (367)
T 3l9p_A          219 PGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVL  296 (367)
T ss_dssp             TTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH
T ss_pred             CCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHH
Confidence               599999999864322110  00        000110112345668899999999999998 99998643321  111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ..+.. ......  +   ...+    ..+.+++.+||+.||.+||++.||++.|+.+.+..
T Consensus       297 ~~i~~-~~~~~~--~---~~~~----~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          297 EFVTS-GGRMDP--P---KNCP----GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             HHHHT-TCCCCC--C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHHc-CCCCCC--C---ccCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            11111 111110  1   1111    23778999999999999999999999999887633

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-37  Score=332.38  Aligned_cols=253  Identities=23%  Similarity=0.354  Sum_probs=192.8

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      ...++|++.+.||+|+||.||+|+..      +++.||||.++... ....+.+.+|+.++++++||||++++++|.+.+
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  123 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK  123 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence            34678999999999999999999864      35889999997643 344678999999999999999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------GKVLNWSERLAVLIGVAKAVQFLHTGVI  611 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~  611 (766)
                              ..++||||+++|+|.+++.+...                     ...+++.+++.++.||+.||+|||+.  
T Consensus       124 --------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~--  193 (343)
T 1luf_A          124 --------PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER--  193 (343)
T ss_dssp             --------SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             --------ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence                    67999999999999999976421                     14589999999999999999999997  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCcccccccccc----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-  680 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-  680 (766)
                       +|+||||||+||+++.++.+||+|||+++.........          +..++......++.++|||||||++|||+| 
T Consensus       194 -~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~  272 (343)
T 1luf_A          194 -KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY  272 (343)
T ss_dssp             -TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             -CeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhc
Confidence             89999999999999999999999999986543221100          000000111345668899999999999999 


Q ss_pred             CCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          681 GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       681 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      |+.|+.....  ......+. .......     ....+    ..+.+++.+||+.||.+||++.||++.|+.+.+
T Consensus       273 g~~p~~~~~~--~~~~~~~~-~~~~~~~-----~~~~~----~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~  335 (343)
T 1luf_A          273 GLQPYYGMAH--EEVIYYVR-DGNILAC-----PENCP----LELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  335 (343)
T ss_dssp             TCCTTTTSCH--HHHHHHHH-TTCCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             CCCcCCCCCh--HHHHHHHh-CCCcCCC-----CCCCC----HHHHHHHHHHcccCcccCCCHHHHHHHHHHHHh
Confidence            9989864322  11111111 1111111     11111    247789999999999999999999999998764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.2e-37  Score=322.44  Aligned_cols=247  Identities=21%  Similarity=0.357  Sum_probs=190.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|+..++..||||.++.... ..+++.+|++++++++||||+++++++.+.+        .
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------~   77 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY--------P   77 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--------S
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--------c
Confidence            356888999999999999999998888999999976432 3467899999999999999999999997653        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           78 IYIVTEYISNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             EEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             eEEEEEccCCCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccce
Confidence            899999999999999997642  3488999999999999999999997   89999999999999999999999999986


Q ss_pred             cccccccccc--CCC-----CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVGG--KQE-----DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~~--~~~-----~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ..........  ...     .|  .....++.++|||||||++|||+| |+.|+......  .....+...   .....+
T Consensus       153 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~---~~~~~~  227 (268)
T 3sxs_A          153 YVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS--EVVLKVSQG---HRLYRP  227 (268)
T ss_dssp             ECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTT---CCCCCC
T ss_pred             ecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH--HHHHHHHcC---CCCCCC
Confidence            5433211111  000     01  011234568999999999999999 99998643321  111111111   111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ..   .+    ..+.+++.+||+.||.+|||+.||++.|+.+.
T Consensus       228 ~~---~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (268)
T 3sxs_A          228 HL---AS----DTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR  263 (268)
T ss_dssp             TT---SC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred             Cc---Ch----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            11   11    23678999999999999999999999998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.5e-37  Score=323.74  Aligned_cols=251  Identities=14%  Similarity=0.223  Sum_probs=189.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+. .+++.||+|.+...   .....+.+.+|+.++++++||||+++++++.+.+      
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~------   84 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDD------   84 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSS------
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCC------
Confidence            5688899999999999999985 46899999998542   3345678999999999999999999999987653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        85 --~~~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg  156 (294)
T 4eqm_A           85 --CYYLVMEYIEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFG  156 (294)
T ss_dssp             --EEEEEEECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCS
T ss_pred             --eEEEEEeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCC
Confidence              7899999999999999997653   489999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc-----cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          639 LSIVSEDINSVG-----GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       639 la~~~~~~~~~~-----~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      +++.........     ++.    ++......++.++|||||||++|||+||+.||........  ...... .......
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~--~~~~~~-~~~~~~~  233 (294)
T 4eqm_A          157 IAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI--AIKHIQ-DSVPNVT  233 (294)
T ss_dssp             SSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH--HHHHHS-SCCCCHH
T ss_pred             CccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHhh-ccCCCcc
Confidence            997543321110     010    1111123456789999999999999999999975432211  111111 1111110


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHHHHh
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRP-SFEDILWNLQYAAQ  755 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-s~~ev~~~L~~~~~  755 (766)
                       +......+    ..+.+++.+|++.||.+|| +++++.+.|+.+..
T Consensus       234 -~~~~~~~~----~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~  275 (294)
T 4eqm_A          234 -TDVRKDIP----QSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH  275 (294)
T ss_dssp             -HHSCTTSC----HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred             -hhcccCCC----HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence             01111111    2367889999999999999 99999999987654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.5e-37  Score=331.34  Aligned_cols=260  Identities=18%  Similarity=0.334  Sum_probs=181.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecC-C---ceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLEN-G---TSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~-g---~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ..++|++.+.||+|+||.||+|+... +   ..||||.++..  .....+.+.+|++++++++||||+++++++.+....
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            45679999999999999999998643 3   27999999754  334567899999999999999999999999875421


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP---GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      .  .....++||||+++|+|.+++.....   ...+++..+..++.|++.||+|||+.   +|+||||||+||++++++.
T Consensus       101 ~--~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~  175 (323)
T 3qup_A          101 G--RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMT  175 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSC
T ss_pred             c--CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCC
Confidence            0  01234999999999999999864321   12488999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccc--ccCCCCCC--------cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhh
Q 004232          632 AKLSDYGLSIVSEDINSV--GGKQEDPN--------SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~--~~~~~~~~--------~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~  700 (766)
                      +||+|||+++........  ......+.        ....++.++|||||||++|||+| |+.|+........  ...+.
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~--~~~~~  253 (323)
T 3qup_A          176 VCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI--YNYLI  253 (323)
T ss_dssp             EEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HHHHH
T ss_pred             EEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH--HHHHh
Confidence            999999999654322111  00000011        11335668899999999999999 8988864332211  11111


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ... ...  .+   ...+    ..+.+++.+||+.||.+|||+.|+++.|+++....
T Consensus       254 ~~~-~~~--~~---~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          254 GGN-RLK--QP---PECM----EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             TTC-CCC--CC---TTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             cCC-CCC--CC---CccC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            111 000  01   1111    34778999999999999999999999999988644

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.4e-37  Score=352.69  Aligned_cols=249  Identities=23%  Similarity=0.412  Sum_probs=191.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC-CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..+|++.+.||+|+||.||+|++.. +..||||.++.... ..++|.+|+.+|++++|||||+++|+|.+.+        
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~--------  289 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREP--------  289 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--------
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCC--------
Confidence            4568888999999999999999764 88999999976432 4578999999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++|||||++|+|.+++++.. ...+++..++.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus       290 ~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a  365 (495)
T 1opk_A          290 PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLS  365 (495)
T ss_dssp             SCEEEEECCTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred             cEEEEEEccCCCCHHHHHHhcC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccc
Confidence            6799999999999999998643 24589999999999999999999997   8999999999999999999999999999


Q ss_pred             cccccccccc-cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          641 IVSEDINSVG-GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       641 ~~~~~~~~~~-~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +......... .....+..|        ..++.++|||||||++|||+| |+.|+.........  ..+. ...  ....
T Consensus       366 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~--~~~~-~~~--~~~~  440 (495)
T 1opk_A          366 RLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY--ELLE-KDY--RMER  440 (495)
T ss_dssp             ECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH--HHHH-TTC--CCCC
T ss_pred             eeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHH--HHHH-cCC--CCCC
Confidence            7653321111 001111112        234557899999999999999 88888643322111  1111 111  1111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      +   ...    ...+.+|+.+||+.||.+||||.||+++|+.+.+
T Consensus       441 ~---~~~----~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          441 P---EGC----PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             C---TTC----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             C---CCC----CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence            1   111    1347789999999999999999999999987653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.1e-37  Score=347.43  Aligned_cols=251  Identities=23%  Similarity=0.390  Sum_probs=189.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..++|++.+.||+|+||.||+|+...+..||||+++... ...++|.+|+++|++++||||++++|+|.+.         
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~---------  251 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---------  251 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---------
T ss_pred             ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcCC---------
Confidence            456788889999999999999999888889999997643 2356799999999999999999999998652         


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||++
T Consensus       252 ~~~iv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a  327 (452)
T 1fmk_A          252 PIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLA  327 (452)
T ss_dssp             SCEEEECCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTT
T ss_pred             ceEEEehhhcCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccc
Confidence            4799999999999999997532 23488999999999999999999997   8999999999999999999999999999


Q ss_pred             cccccccccc-cCCCCCCc--------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          641 IVSEDINSVG-GKQEDPNS--------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       641 ~~~~~~~~~~-~~~~~~~~--------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +......... .....+..        ...++.++|||||||++|||+| |+.|+.....  .+....+.. ..  ....
T Consensus       328 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~~-~~--~~~~  402 (452)
T 1fmk_A          328 RLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVER-GY--RMPC  402 (452)
T ss_dssp             C--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHT-TC--CCCC
T ss_pred             eecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-CC--CCCC
Confidence            7653321110 00001111        1345668999999999999999 8999864322  121222211 11  1111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      |   ...    ...+.+++.+||+.||.+||||++|++.|+.+....
T Consensus       403 ~---~~~----~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          403 P---PEC----PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             C---TTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             C---CCC----CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence            1   111    234778999999999999999999999999876433

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.6e-36  Score=319.30  Aligned_cols=249  Identities=21%  Similarity=0.375  Sum_probs=185.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhh-------hHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKY-------TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-------~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||.||+|+. .+++.||||++......       ..+.+.+|+.++++++||||+++++++.+.  
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--   95 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--   95 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--
Confidence            35788899999999999999986 47899999998643221       126789999999999999999999998654  


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--  631 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~--  631 (766)
                              .++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.. ++|+||||||+||+++.++.  
T Consensus        96 --------~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~  164 (287)
T 4f0f_A           96 --------PRMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENA  164 (287)
T ss_dssp             --------TEEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTC
T ss_pred             --------CeEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCC
Confidence                    279999999999999886543  35899999999999999999999972 12999999999999987776  


Q ss_pred             ---EEEecCCCCccccccccc-ccCC--CCCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc
Q 004232          632 ---AKLSDYGLSIVSEDINSV-GGKQ--EDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS  701 (766)
Q Consensus       632 ---~kl~DFGla~~~~~~~~~-~~~~--~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~  701 (766)
                         +||+|||+++........ .++.  ..|...    ..++.++|||||||++|||++|+.||.............+..
T Consensus       165 ~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~  244 (287)
T 4f0f_A          165 PVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE  244 (287)
T ss_dssp             SCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHH
T ss_pred             ceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhc
Confidence               999999999654332111 1111  111111    123457899999999999999999987543332222222221


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      ......     .....+    ..+.+++.+||+.||.+|||++||++.|++
T Consensus       245 ~~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          245 EGLRPT-----IPEDCP----PRLRNVIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             SCCCCC-----CCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             cCCCCC-----CCcccC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            111111     111111    347789999999999999999999999975

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=9.2e-37  Score=320.27  Aligned_cols=249  Identities=18%  Similarity=0.322  Sum_probs=181.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||.||+|+..    .+..||||.++... ....+.+.+|+.++++++||||+++++++.+.     
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----   88 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN-----   88 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccC-----
Confidence            456888999999999999999864    25679999987543 34467799999999999999999999998542     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        89 ----~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~D  159 (281)
T 1mp8_A           89 ----PVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGD  159 (281)
T ss_dssp             ----SCEEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred             ----ccEEEEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECc
Confidence                5799999999999999997643  3489999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          637 YGLSIVSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       637 FGla~~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ||+++.........         +..++......++.++|||||||++|||++ |..||........  ...+.. ....
T Consensus       160 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~--~~~i~~-~~~~  236 (281)
T 1mp8_A          160 FGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--IGRIEN-GERL  236 (281)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HHHHHT-TCCC
T ss_pred             cccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHH--HHHHHc-CCCC
Confidence            99997653321110         000000111334567899999999999997 8888864332211  111111 1111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .     .....+    ..+.+++.+||+.||.+|||+.||++.|+.+.+.
T Consensus       237 ~-----~~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          237 P-----MPPNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             C-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C-----CCCCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            1     111112    2367899999999999999999999999988653

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=6e-37  Score=322.81  Aligned_cols=249  Identities=27%  Similarity=0.397  Sum_probs=186.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CC-------ceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NG-------TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ++|.+.+.||+|+||.||+|+.. ++       ..||+|.+........+.+.+|+.++++++||||+++++++.+.+  
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--   85 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD--   85 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT--
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC--
Confidence            56888899999999999999854 33       469999997766667788999999999999999999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI---  631 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~---  631 (766)
                            ..++||||+++|+|.+++.+..  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.   
T Consensus        86 ------~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~  154 (289)
T 4fvq_A           86 ------ENILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKT  154 (289)
T ss_dssp             ------CCEEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGG
T ss_pred             ------CCEEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccc
Confidence                  5799999999999999997643  2388999999999999999999997   8999999999999998876   


Q ss_pred             -----EEEecCCCCcccccccccccCC--CCCCc--c-cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc
Q 004232          632 -----AKLSDYGLSIVSEDINSVGGKQ--EDPNS--W-EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS  701 (766)
Q Consensus       632 -----~kl~DFGla~~~~~~~~~~~~~--~~~~~--~-~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~  701 (766)
                           +||+|||++..........++.  ..|..  . ..++.++|||||||++|||+||..|+...... .........
T Consensus       155 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~-~~~~~~~~~  233 (289)
T 4fvq_A          155 GNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDS-QRKLQFYED  233 (289)
T ss_dssp             TBCCEEEECCCCSCTTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHHHHHHT
T ss_pred             cccceeeeccCcccccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccch-HHHHHHhhc
Confidence                 9999999986543322111111  11111  1 33566889999999999999965544322211 111111111


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                         ...+..+ . .       ..+.+++.+||+.||.+|||+.||++.|+.+....
T Consensus       234 ---~~~~~~~-~-~-------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~  277 (289)
T 4fvq_A          234 ---RHQLPAP-K-A-------AELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPD  277 (289)
T ss_dssp             ---TCCCCCC-S-S-------CTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC---
T ss_pred             ---cCCCCCC-C-C-------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCC
Confidence               1111111 0 1       12668899999999999999999999999876543

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=6.5e-37  Score=333.95  Aligned_cols=262  Identities=14%  Similarity=0.196  Sum_probs=187.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC------CceEEEEEccCChhhhH-----------HHHHHHHHHHHhCCCCCcccc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTV-----------RNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~~~~-----------~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      .++|++.+.||+|+||.||+|+...      ++.||||.+........           ..+..|+..++.++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4579999999999999999998754      47899999876542211           123445667788899999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                      ++++.+....    ....++||||+ +|+|.+++....  ..+++..+..++.||+.||+|||+.   +|+||||||+||
T Consensus       114 ~~~~~~~~~~----~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Ni  183 (364)
T 3op5_A          114 WGSGLHDKNG----KSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNL  183 (364)
T ss_dssp             EEEEEEEETT----EEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGE
T ss_pred             EeeeeeccCC----cceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHE
Confidence            9998874211    13589999999 999999997642  3589999999999999999999997   899999999999


Q ss_pred             EEc--CCCcEEEecCCCCcccccccccc-----------cCCC--CC--CcccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          625 LLN--EHRIAKLSDYGLSIVSEDINSVG-----------GKQE--DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       625 Lld--~~~~~kl~DFGla~~~~~~~~~~-----------~~~~--~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      |++  .++.+||+|||+++.........           ++..  .|  .....++.++|||||||++|||+||+.||..
T Consensus       184 ll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~  263 (364)
T 3op5_A          184 LLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWED  263 (364)
T ss_dssp             EEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred             EEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            999  88999999999996543321110           0000  00  1112355678999999999999999999974


Q ss_pred             CccchH-HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          688 KGQFLQ-EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       688 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ...... .............++.++.+.....   ...+.+++.+||+.||.+||++.+|++.|+.+...
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          264 NLKDPKYVRDSKIRYRENIASLMDKCFPAANA---PGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             GTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCC---CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhHHHHHHHhcccccC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            221111 1111111111222333332211111   12467889999999999999999999999988753

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-37  Score=334.42  Aligned_cols=248  Identities=22%  Similarity=0.366  Sum_probs=179.5

Q ss_pred             CCCcCCceecCCceeEEEEEec--C--CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE--N--GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~--~--g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .|++.+.||+|+||.||+|+..  +  +..||||.++.. .....+++.+|+.++++++||||++++++|.+.+      
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~------  163 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE------  163 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCS------
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC------
Confidence            3666789999999999999863  2  246899998654 3345678999999999999999999999987643      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ...++||||+++|+|.+++.+..  ..+++..+..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       164 -~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG  237 (373)
T 3c1x_A          164 -GSPLVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFG  237 (373)
T ss_dssp             -SCCEEEEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             -CCeEEEEECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecc
Confidence             25799999999999999997543  3478999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc----cCCCCCC--------cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          639 LSIVSEDINSVG----GKQEDPN--------SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       639 la~~~~~~~~~~----~~~~~~~--------~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      +++.........    .....+.        ....++.++|||||||++|||+| |..|+..........  .+.. .. 
T Consensus       238 ~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~--~~~~-~~-  313 (373)
T 3c1x_A          238 LARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV--YLLQ-GR-  313 (373)
T ss_dssp             --------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH--HHHT-TC-
T ss_pred             ccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH--HHHc-CC-
Confidence            997543211100    0000011        11345668899999999999999 566665432221111  1111 11 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....|.   ..+    ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       314 -~~~~p~---~~~----~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~  355 (373)
T 3c1x_A          314 -RLLQPE---YCP----DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  355 (373)
T ss_dssp             -CCCCCT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCCC---CCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence             111111   111    237789999999999999999999999999875

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.7e-36  Score=321.73  Aligned_cols=251  Identities=25%  Similarity=0.408  Sum_probs=190.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|.+.+.||+|+||.||+|+.      .++..||||.++.. .....+.+.+|++++++++||||+++++++.+.+  
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--   99 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG--   99 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC--
Confidence            46788899999999999999985      24588999999754 3445678999999999999999999999987753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPG  613 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  613 (766)
                            ..++||||+++|+|.+++.+...                     ...+++..+..++.+++.||+|||+.   +
T Consensus       100 ------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~  170 (314)
T 2ivs_A          100 ------PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---K  170 (314)
T ss_dssp             ------SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             ------ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---C
Confidence                  57999999999999999976432                     13478999999999999999999997   8


Q ss_pred             cccCCCCCCceEEcCCCcEEEecCCCCcccccccccc--cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CC
Q 004232          614 FFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG--GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GP  682 (766)
Q Consensus       614 ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~--~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~  682 (766)
                      |+||||||+||+++.++.+||+|||++..........  .....+..+        ..++.++|||||||++|||+| |+
T Consensus       171 ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~  250 (314)
T 2ivs_A          171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG  250 (314)
T ss_dssp             EECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999996543221110  000001111        224567899999999999999 99


Q ss_pred             CccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       683 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .|+.........  ..+. ......     .....+    ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       251 ~p~~~~~~~~~~--~~~~-~~~~~~-----~~~~~~----~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          251 NPYPGIPPERLF--NLLK-TGHRME-----RPDNCS----EEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             CSSTTCCGGGHH--HHHH-TTCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHH--HHhh-cCCcCC-----CCccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            998643322111  1111 111111     111112    237789999999999999999999999998864

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.6e-36  Score=316.02  Aligned_cols=252  Identities=19%  Similarity=0.307  Sum_probs=189.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+.. ++.||||+++...  ....+.+.+|+.++++++||||++++++|.+.++      .
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~------~   82 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPA------P   82 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTS------S
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCC------C
Confidence            56888899999999999999975 8899999997543  3456789999999999999999999999987632      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+.. ...+++..+..++.|++.||+|||+.. ++|+||||||+||+++.++.+||+|||++
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~  160 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGT-NFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVK  160 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCS-SCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSC
T ss_pred             CeEeeecccCCCcHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccce
Confidence            5799999999999999998643 235899999999999999999999862 23999999999999999999999999887


Q ss_pred             cccccccccccCC-CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccccc
Q 004232          641 IVSEDINSVGGKQ-EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVM  714 (766)
Q Consensus       641 ~~~~~~~~~~~~~-~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  714 (766)
                      .........++.. ..|..     ....+.++|||||||++|||+||+.||......  ..............     ..
T Consensus       161 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~-----~~  233 (271)
T 3kmu_A          161 FSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNM--EIGMKVALEGLRPT-----IP  233 (271)
T ss_dssp             CTTSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHH--HHHHHHHHSCCCCC-----CC
T ss_pred             eeecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChH--HHHHHHHhcCCCCC-----CC
Confidence            5433222111111 01111     111222689999999999999999998743321  11111111111111     11


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          715 ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       715 ~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ...+    ..+.+++.+||+.||.+|||++||++.|+.+.
T Consensus       234 ~~~~----~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          234 PGIS----PHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             CCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence            1112    23778999999999999999999999999874

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.4e-36  Score=318.81  Aligned_cols=252  Identities=20%  Similarity=0.339  Sum_probs=189.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC----CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|.+.+.||+|+||.||+|+...    +..||||.+... .....+.+.+|+.++++++||||+++++++.+.     
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----   85 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-----   85 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-----
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-----
Confidence            4678889999999999999998542    346999998764 344567899999999999999999999998653     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        86 ----~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~D  156 (281)
T 3cc6_A           86 ----PTWIIMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGD  156 (281)
T ss_dssp             ----SCEEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECC
T ss_pred             ----CCEEEEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCc
Confidence                4589999999999999997643  3488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc--cCC-----CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          637 YGLSIVSEDINSVG--GKQ-----EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       637 FGla~~~~~~~~~~--~~~-----~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ||++..........  ...     ..|  .....++.++|||||||++|||+| |+.|+.........  ..+.. ... 
T Consensus       157 fg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~--~~~~~-~~~-  232 (281)
T 3cc6_A          157 FGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVI--GVLEK-GDR-  232 (281)
T ss_dssp             CCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHH--HHHHH-TCC-
T ss_pred             cCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHH--HHHhc-CCC-
Confidence            99986543321110  000     011  111345567899999999999999 99998643322111  11111 101 


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                       ...+.   ..+    ..+.+++.+||+.||.+||++.||++.|+.+.+.+.+
T Consensus       233 -~~~~~---~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~  277 (281)
T 3cc6_A          233 -LPKPD---LCP----PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKD  277 (281)
T ss_dssp             -CCCCT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCC---CCC----HHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhhh
Confidence             11111   111    2377899999999999999999999999998876543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.1e-36  Score=315.47  Aligned_cols=246  Identities=23%  Similarity=0.393  Sum_probs=178.7

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChh----hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK----YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. |+.||||+++....    ...+.+.+|++++++++||||++++++|.+.+      
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   79 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP------   79 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-------
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC------
Confidence            57888999999999999999975 88999999865432    23567899999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--------CC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE--------HR  630 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~--------~~  630 (766)
                        ..++||||+++|+|.+++...    .+++..+..++.+++.||+|||+....+|+||||||+||+++.        ++
T Consensus        80 --~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~  153 (271)
T 3dtc_A           80 --NLCLVMEFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNK  153 (271)
T ss_dssp             ---CEEEEECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSC
T ss_pred             --ceEEEEEcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCc
Confidence              679999999999999988632    4889999999999999999999985445999999999999986        67


Q ss_pred             cEEEecCCCCccccccccccc------CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          631 IAKLSDYGLSIVSEDINSVGG------KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~~------~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      .+||+|||++...........      ..++......++.++|||||||++|||+||+.||.........  ........
T Consensus       154 ~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~~~  231 (271)
T 3dtc_A          154 ILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVA--YGVAMNKL  231 (271)
T ss_dssp             CEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHH--HHHHTSCC
T ss_pred             ceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--HhhhcCCC
Confidence            899999999965433221110      0111111133566789999999999999999998743322111  11111111


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      ...     .....+    ..+.+++.+||+.||.+|||+.||+++|+.
T Consensus       232 ~~~-----~~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          232 ALP-----IPSTCP----EPFAKLMEDCWNPDPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             CCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred             CCC-----CCcccC----HHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence            111     111111    237789999999999999999999999975

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.7e-36  Score=315.45  Aligned_cols=247  Identities=23%  Similarity=0.414  Sum_probs=190.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||.||+|+..++..||+|.+..... ..+.+.+|++++++++||||+++++++.+.+        ..
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~~   78 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--------PI   78 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSS--------SC
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCC--------Ce
Confidence            56888899999999999999988889999999976543 3467899999999999999999999998753        57


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        79 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           79 CLVTEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             EEEECCCTTCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGG
T ss_pred             EEEEeCCCCCcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccc
Confidence            99999999999999997653  3478999999999999999999997   899999999999999999999999999875


Q ss_pred             cccccccc--cC-------CCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVG--GK-------QEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~--~~-------~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ........  ..       .++......++.++||||||+++|||+| |+.|+.....  ......+... .  ....+.
T Consensus       154 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~i~~~-~--~~~~~~  228 (267)
T 3t9t_A          154 VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--SEVVEDISTG-F--RLYKPR  228 (267)
T ss_dssp             BCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHTT-C--CCCCCT
T ss_pred             cccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH--HHHHHHHhcC-C--cCCCCc
Confidence            43211100  00       0000111344567899999999999999 8888864322  1112222111 0  111111


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                         ..+    ..+.+++.+||+.||.+||++.|+++.|+++.+
T Consensus       229 ---~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          229 ---LAS----THVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             ---TSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---cCc----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence               111    236789999999999999999999999999864

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=6.2e-37  Score=329.09  Aligned_cols=250  Identities=17%  Similarity=0.293  Sum_probs=183.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC----
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD----  555 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~----  555 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||+++++|.+.....    
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            467888999999999999999975 79999999987533 345678999999999999999999999987653100    


Q ss_pred             ---------------------------------------------CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHH
Q 004232          556 ---------------------------------------------DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS  590 (766)
Q Consensus       556 ---------------------------------------------~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~  590 (766)
                                                                   .......++||||+++|+|.+++.+.......++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                         00012379999999999999999876554556788


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccccccccc-----------------cc--
Q 004232          591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-----------------GG--  651 (766)
Q Consensus       591 ~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~-----------------~~--  651 (766)
                      .+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........                 ++  
T Consensus       165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            8899999999999999997   8999999999999999999999999999765432100                 00  


Q ss_pred             -CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHH
Q 004232          652 -KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIAN  730 (766)
Q Consensus       652 -~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~  730 (766)
                       ..++......++.++|||||||++|||++|..|+...    ......... .....         ........+.+++.
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----~~~~~~~~~-~~~~~---------~~~~~~~~~~~li~  307 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----VRIITDVRN-LKFPL---------LFTQKYPQEHMMVQ  307 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHT-TCCCH---------HHHHHCHHHHHHHH
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----HHHHHHhhc-cCCCc---------ccccCChhHHHHHH
Confidence             0000011134567889999999999999997765311    111111111 00000         00112234678999


Q ss_pred             HhccCCCCCCCCHHHHHH
Q 004232          731 KCICSESWSRPSFEDILW  748 (766)
Q Consensus       731 ~C~~~~p~~RPs~~ev~~  748 (766)
                      +||+.||.+||++.|+++
T Consensus       308 ~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          308 DMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHHCSSGGGSCCHHHHHH
T ss_pred             HHccCCCCcCCCHHHHhh
Confidence            999999999999999975

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.2e-36  Score=326.40  Aligned_cols=247  Identities=21%  Similarity=0.356  Sum_probs=184.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCce----EEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTS----VAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~----vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|++.+.||+|+||.||+|+.. +++.    ||+|.+.... ....+.+.+|+.++++++||||++++++|.+.     
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----   87 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGS-----   87 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBS-----
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC-----
Confidence            46888899999999999999854 4554    7888775432 23345677899999999999999999998643     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus        88 ----~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D  158 (325)
T 3kex_A           88 ----SLQLVTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVAD  158 (325)
T ss_dssp             ----SEEEEEECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECS
T ss_pred             ----ccEEEEEeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECC
Confidence                5799999999999999997642  3488899999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc--cCCCCC--------CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSVG--GKQEDP--------NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~~--~~~~~~--------~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++.........  .....+        .....++.++|||||||++|||+| |+.||..........  .+. ... 
T Consensus       159 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~--~~~-~~~-  234 (325)
T 3kex_A          159 FGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPD--LLE-KGE-  234 (325)
T ss_dssp             CSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHH--HHH-TTC-
T ss_pred             CCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHH--HHH-cCC-
Confidence            99997653321110  000000        011345668899999999999999 999987543222111  111 111 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....+....       ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       235 -~~~~~~~~~-------~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          235 -RLAQPQICT-------IDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             -BCCCCTTBC-------TTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             -CCCCCCcCc-------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence             111111111       125688999999999999999999999998764

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.4e-36  Score=323.24  Aligned_cols=251  Identities=23%  Similarity=0.390  Sum_probs=185.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecC-----CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN-----GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..|...+.||+|+||.||+|+...     +..||||.++... ....+.+.+|+.++++++||||+++++++.+.+    
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----  119 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK----  119 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCC----
Confidence            456677899999999999998642     3459999997543 344567899999999999999999999987653    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus       120 ----~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~D  190 (333)
T 1mqb_A          120 ----PMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSD  190 (333)
T ss_dssp             ----SEEEEEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred             ----CcEEEEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECC
Confidence                6899999999999999997643  3489999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc-----------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          637 YGLSIVSEDINSVG-----------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       637 FGla~~~~~~~~~~-----------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ||+++.........           ...++......++.++|||||||++|||+| |+.|+.....  ......+.. ..
T Consensus       191 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--~~~~~~~~~-~~  267 (333)
T 1mqb_A          191 FGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN--HEVMKAIND-GF  267 (333)
T ss_dssp             CCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHT-TC
T ss_pred             CCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHC-CC
Confidence            99997643321100           000000111334567899999999999999 9999864322  111121211 11


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                        ....+   ...+    ..+.+++.+||+.||.+||++.||++.|+.+....+
T Consensus       268 --~~~~~---~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~  312 (333)
T 1mqb_A          268 --RLPTP---MDCP----SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD  312 (333)
T ss_dssp             --CCCCC---TTCB----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             --cCCCc---ccCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence              11111   1111    236789999999999999999999999999876443

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=5.2e-36  Score=325.53  Aligned_cols=244  Identities=21%  Similarity=0.335  Sum_probs=185.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .+.|++.+.||+|+||.||+|+.. +|+.||||.++....      ...+.+.+|+.++++++||||+++++++.+..  
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~--   88 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRT--   88 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCC--
Confidence            467889999999999999999864 689999999975432      13578999999999999999999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR----  630 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~----  630 (766)
                            ..++||||+++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+||+++.++    
T Consensus        89 ------~~~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~  156 (361)
T 2yab_A           89 ------DVVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP  156 (361)
T ss_dssp             ------EEEEEEECCCSCBHHHHHTTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred             ------EEEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCcc
Confidence                  7899999999999999997543   489999999999999999999997   899999999999998776    


Q ss_pred             cEEEecCCCCcccccccccccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          631 IAKLSDYGLSIVSEDINSVGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      .+||+|||+++..............+       .....++.++|||||||++|||++|..||.....  ......+... 
T Consensus       157 ~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--~~~~~~i~~~-  233 (361)
T 2yab_A          157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANITAV-  233 (361)
T ss_dssp             CEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHTT-
T ss_pred             CEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhc-
Confidence            79999999997654322111111111       1123456789999999999999999999964322  2222222111 


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ...+ ++......+    ..+.+++.+|++.||.+|||+.|+++
T Consensus       234 -~~~~-~~~~~~~~s----~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          234 -SYDF-DEEFFSQTS----ELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             -CCCC-CHHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -CCCC-CchhccCCC----HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             1111 111111112    23678999999999999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=4e-36  Score=323.40  Aligned_cols=241  Identities=20%  Similarity=0.275  Sum_probs=185.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~-----   78 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD-----   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS-----
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCC-----
Confidence            367889999999999999999864 69999999996542   234567889999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|..++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+||
T Consensus        79 ---~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DF  149 (337)
T 1o6l_A           79 ---RLCFVMEYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDF  149 (337)
T ss_dssp             ---EEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             ---EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeec
Confidence               7899999999999999997643   378999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc----c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINS----V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~----~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |+++.......    . +   +..++......++.++|||||||++|||++|+.||.....  ......+....  ..+ 
T Consensus       150 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~--~~~-  224 (337)
T 1o6l_A          150 GLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--ERLFELILMEE--IRF-  224 (337)
T ss_dssp             TTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCC-
T ss_pred             cchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH--HHHHHHHHcCC--CCC-
Confidence            99975321110    0 1   1111111223456789999999999999999999864332  12222221111  111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~  749 (766)
                       |   ...+    ..+.+++.+||+.||.+||     +++||++.
T Consensus       225 -p---~~~s----~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          225 -P---RTLS----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             -C---TTSC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             -C---CCCC----HHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence             1   1112    2367899999999999999     89888753

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.1e-36  Score=321.06  Aligned_cols=243  Identities=20%  Similarity=0.331  Sum_probs=184.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      +.|++.+.||+|+||.||+|+.. +|+.||||.++....      ...+.+.+|+.++++++||||+++++++.+..   
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---   87 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT---   87 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS---
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC---
Confidence            45888999999999999999864 689999999865422      23678999999999999999999999998753   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----c
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR----I  631 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~----~  631 (766)
                           ..++||||+++|+|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++    .
T Consensus        88 -----~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~  156 (326)
T 2y0a_A           88 -----DVILILELVAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPR  156 (326)
T ss_dssp             -----EEEEEEECCCSCBHHHHHTTSS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCC
T ss_pred             -----EEEEEEEcCCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCC
Confidence                 7899999999999999997543   489999999999999999999997   899999999999999877    8


Q ss_pred             EEEecCCCCcccccccccc---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          632 AKLSDYGLSIVSEDINSVG---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +||+|||+++.........   ++.    ++......++.++|||||||++|||++|+.||.....  ......+.... 
T Consensus       157 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~~~~~~-  233 (326)
T 2y0a_A          157 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANVSAVN-  233 (326)
T ss_dssp             EEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHTC-
T ss_pred             EEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH--HHHHHHHHhcC-
Confidence            9999999997653221111   111    1111123456789999999999999999999864322  11122111110 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       ....++ .....+    ..+.+++.+||+.||.+|||+.|+++
T Consensus       234 -~~~~~~-~~~~~~----~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          234 -YEFEDE-YFSNTS----ALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             -CCCCHH-HHTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -CCcCcc-ccccCC----HHHHHHHHHHccCChhhCCCHHHHhc
Confidence             111111 111111    23678999999999999999999986

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.4e-36  Score=323.86  Aligned_cols=252  Identities=23%  Similarity=0.373  Sum_probs=191.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||.||+|+.      .+++.||||.++... ....+.+.+|+.+++++ +||||++++++|.+.+ 
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~-  100 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG-  100 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC-
Confidence            46788899999999999999984      357889999997543 34467899999999999 9999999999998753 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP---------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                             ..++||||+++|+|.+++.....               ...+++..+..++.+++.||+|||+.   +|+|||
T Consensus       101 -------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~d  170 (313)
T 1t46_A          101 -------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRD  170 (313)
T ss_dssp             -------SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred             -------CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCC
Confidence                   57999999999999999976532               12489999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc---cC-----CCCC--CcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG---GK-----QEDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~---~~-----~~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+||+++.++.+||+|||++..........   ..     ...|  .....++.++|||||||++|||+| |+.|+..
T Consensus       171 lkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  250 (313)
T 1t46_A          171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG  250 (313)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             CccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999986543322110   00     0011  111345567899999999999999 9998864


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ......  .......... . ..+   ...+    ..+.+++.+||+.||.+|||+.||+++|+++..
T Consensus       251 ~~~~~~--~~~~~~~~~~-~-~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  307 (313)
T 1t46_A          251 MPVDSK--FYKMIKEGFR-M-LSP---EHAP----AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS  307 (313)
T ss_dssp             CCSSHH--HHHHHHHTCC-C-CCC---TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccchhH--HHHHhccCCC-C-CCc---ccCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence            332111  1111111100 0 011   1111    237789999999999999999999999998764

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=327.44  Aligned_cols=260  Identities=17%  Similarity=0.251  Sum_probs=188.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|+.+++++. ||||+++++++...........
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            35788999999999999999996 478999999987666666778999999999996 9999999999864321111122


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||+. |+|.+++........+++..+..++.+++.||+|||+.. ++|+||||||+||+++.++.+||+|||+
T Consensus       107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  184 (337)
T 3ll6_A          107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGS  184 (337)
T ss_dssp             EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred             ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCcc
Confidence            46899999996 799998875333345899999999999999999999972 1399999999999999999999999999


Q ss_pred             Cccccccccc-----------------c---cCCCCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH
Q 004232          640 SIVSEDINSV-----------------G---GKQEDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL  696 (766)
Q Consensus       640 a~~~~~~~~~-----------------~---~~~~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~  696 (766)
                      ++........                 +   +..++..   ....++.++|||||||++|||+||+.||......  ...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--~~~  262 (337)
T 3ll6_A          185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--RIV  262 (337)
T ss_dssp             CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--Hhh
Confidence            9764332110                 0   0011111   1122345789999999999999999998632211  100


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      .    .  ......+   ....    ..+.+++.+||+.||.+||++.|+++.|+.+.....
T Consensus       263 ~----~--~~~~~~~---~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          263 N----G--KYSIPPH---DTQY----TVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             ---------CCCCTT---CCSS----GGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             c----C--cccCCcc---cccc----hHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence            0    0  0010000   0011    126688999999999999999999999999876543

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3e-37  Score=331.48  Aligned_cols=263  Identities=19%  Similarity=0.274  Sum_probs=190.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|++     .+++.||||++........+.+.+|++++++++||||+++++++...+.    
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~----   98 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR----   98 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS----
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC----
Confidence            5688899999999999999984     3688999999987776677889999999999999999999999875431    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        99 --~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Df  171 (327)
T 3lxl_A           99 --QSLRLVMEYLPSGCLRDFLQRHR--ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADF  171 (327)
T ss_dssp             --CEEEEEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCG
T ss_pred             --ceEEEEEeecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccc
Confidence              36899999999999999997642  2488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---c
Q 004232          638 GLSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---E  703 (766)
Q Consensus       638 Gla~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---~  703 (766)
                      |++.........   .........+        ..++.++|||||||++|||+||+.|+.................   .
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~  251 (327)
T 3lxl_A          172 GLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALS  251 (327)
T ss_dssp             GGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHH
T ss_pred             ccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHH
Confidence            999764322111   0000001111        1234578999999999999999999763221111000000000   0


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ...+.................+.+++.+||+.||.+|||+.||++.|+.+...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  304 (327)
T 3lxl_A          252 RLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG  304 (327)
T ss_dssp             HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred             HHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            00000000000000111123477899999999999999999999999987643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=349.71  Aligned_cols=245  Identities=20%  Similarity=0.344  Sum_probs=185.3

Q ss_pred             CCcCC-ceecCCceeEEEEEec---CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          485 FDMSA-IMGEGSYGKLYKGRLE---NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       485 f~~~~-~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +.+.+ .||+|+||.||+|.+.   ++..||||+++... ....+++.+|+++|++++|||||+++|+|.+.        
T Consensus       337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~--------  408 (613)
T 2ozo_A          337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE--------  408 (613)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESS--------
T ss_pred             eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccC--------
Confidence            33334 7999999999999864   46779999997643 34568899999999999999999999999753        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++....  ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       409 -~~~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGl  482 (613)
T 2ozo_A          409 -ALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGL  482 (613)
T ss_dssp             -SEEEEEECCTTCBHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCST
T ss_pred             -CeEEEEEeCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccC
Confidence             5899999999999999997542  3589999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc---ccCCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccc
Q 004232          640 SIVSEDINSV---GGKQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       640 a~~~~~~~~~---~~~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      ++........   .....      .|  .....++.++|||||||++|||+| |+.||......  +....+. .+....
T Consensus       483 a~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~-~~~~~~  559 (613)
T 2ozo_A          483 SKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIE-QGKRME  559 (613)
T ss_dssp             TTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHH-TTCCCC
T ss_pred             cccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHH-cCCCCC
Confidence            9765322110   00000      11  111345668999999999999998 99998743321  1111111 111111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .  |   ...    ...+.+|+.+||+.||.+||+|.+|++.|+.+..
T Consensus       560 ~--p---~~~----~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  598 (613)
T 2ozo_A          560 C--P---PEC----PPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  598 (613)
T ss_dssp             C--C---TTC----CHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             C--C---CcC----CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            1  1   111    1347789999999999999999999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=7.9e-36  Score=321.38  Aligned_cols=253  Identities=19%  Similarity=0.437  Sum_probs=190.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe--------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL--------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~--------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|.+.+.||+|+||.||+|+.        .++..||||+++... ....+.+.+|+++++++ +||||++++++|.+.
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            46788899999999999999985        346789999997543 34567899999999999 899999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      +        ..++||||+++|+|.+++.....             ...+++..+..++.+++.||+|||+.   +|+|||
T Consensus       114 ~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~D  182 (334)
T 2pvf_A          114 G--------PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRD  182 (334)
T ss_dssp             S--------CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred             C--------ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCC
Confidence            3        67999999999999999976432             12488999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCcccccccccc--cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVG--GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~--~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+||+++.++.+||+|||++..........  .....+..+        ..++.++|||||||++|||+| |+.|+..
T Consensus       183 lkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  262 (334)
T 2pvf_A          183 LAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG  262 (334)
T ss_dssp             CSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             CccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCc
Confidence            99999999999999999999997543321110  000001111        234557899999999999999 9999864


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ...  ......+.. .....     .....+    ..+.+++.+||+.||.+||++.||++.|+.+....
T Consensus       263 ~~~--~~~~~~~~~-~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          263 IPV--EELFKLLKE-GHRMD-----KPANCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             CCH--HHHHHHHHH-TCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCH--HHHHHHHhc-CCCCC-----CCccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            322  111111111 11111     111111    23778999999999999999999999999987643

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.2e-36  Score=330.54  Aligned_cols=265  Identities=18%  Similarity=0.217  Sum_probs=195.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.|.+.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+.++      .
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~------~   82 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTT------R   82 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTT------C
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCC------C
Confidence            46888999999999999999965 58999999997543 2335778899999999999999999999887542      2


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCCcEEEec
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL----NEHRIAKLSD  636 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----d~~~~~kl~D  636 (766)
                      ..++||||+++|+|.+++.+......+++..+..++.+++.||+|||+.   +|+||||||+||++    +.++.+||+|
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~D  159 (396)
T 4eut_A           83 HKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTD  159 (396)
T ss_dssp             CEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECC
T ss_pred             eeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEec
Confidence            5799999999999999997654444489999999999999999999997   89999999999999    7788899999


Q ss_pred             CCCCcccccccccccCCCCCCcc---------------cCCCCCCCEeehhHHHHHHhcCCCccccCc--cchHHHHhhh
Q 004232          637 YGLSIVSEDINSVGGKQEDPNSW---------------EMTKLEDDVFSFGFMLLESVAGPSVAARKG--QFLQEELDSL  699 (766)
Q Consensus       637 FGla~~~~~~~~~~~~~~~~~~~---------------~~~~~~~DV~SfGvil~ElltG~~p~~~~~--~~~~~~~~~~  699 (766)
                      ||+++..............+.+.               ..++.++|||||||++|||+||+.||....  ......+..+
T Consensus       160 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~  239 (396)
T 4eut_A          160 FGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (396)
T ss_dssp             GGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHH
T ss_pred             CCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHH
Confidence            99997654332211111111100               122346899999999999999999986322  1111222221


Q ss_pred             hcccC---cccc----------c-cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          700 NSQEG---RQRL----------V-DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       700 ~~~~~---~~~~----------~-d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .....   ...+          . +..............+.+++.+||+.||++||+++|+++.++.+...
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             hcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            11110   0000          0 00011122345556688999999999999999999999999988753

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=6.2e-36  Score=316.63  Aligned_cols=249  Identities=21%  Similarity=0.340  Sum_probs=185.4

Q ss_pred             cCCCcCCceecCCceeEEEEEecC----CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..|++.+.||+|+||.||+|+..+    +..||||.+.... ....+.+.+|+.++++++||||++++++|.+.+     
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----   99 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-----   99 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS-----
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCC-----
Confidence            457788999999999999998542    3368999987543 445678999999999999999999999987654     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus       100 --~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Df  172 (298)
T 3f66_A          100 --GSPLVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADF  172 (298)
T ss_dssp             --SCCEEEEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSC
T ss_pred             --CceEEEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcc
Confidence              35799999999999999997543  3478999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccccc-----CCC-----CC--CcccCCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccC
Q 004232          638 GLSIVSEDINSVGG-----KQE-----DP--NSWEMTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       638 Gla~~~~~~~~~~~-----~~~-----~~--~~~~~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      |+++..........     ...     .|  .....++.++|||||||++|||++| .+|+..........  .+.. . 
T Consensus       173 g~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~--~~~~-~-  248 (298)
T 3f66_A          173 GLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV--YLLQ-G-  248 (298)
T ss_dssp             GGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH--HHHT-T-
T ss_pred             cccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH--HHhc-C-
Confidence            99965433211100     000     00  0113445678999999999999995 55554322221111  1111 1 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       .....+.   ..+    ..+.+++.+||+.||.+||++.|++++|+++..
T Consensus       249 -~~~~~~~---~~~----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  291 (298)
T 3f66_A          249 -RRLLQPE---YCP----DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  291 (298)
T ss_dssp             -CCCCCCT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCCCCCc---cCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence             0111111   111    237789999999999999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=8e-37  Score=349.69  Aligned_cols=250  Identities=23%  Similarity=0.395  Sum_probs=191.4

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..++|++.+.||+|+||.||+|++..+..||||+++... ...++|.+|+++|++++|||||+++|+|.+.         
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~---------  334 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---------  334 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---------
T ss_pred             chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEeec---------
Confidence            346688889999999999999999888889999997644 2356799999999999999999999998652         


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.++++... ...+++..++.++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||++
T Consensus       335 ~~~lv~e~~~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a  410 (535)
T 2h8h_A          335 PIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLA  410 (535)
T ss_dssp             SCEEEECCCTTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTST
T ss_pred             cceEeeehhcCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccc
Confidence            5799999999999999997532 23488999999999999999999997   8999999999999999999999999999


Q ss_pred             cccccccccc-cCCCCCCc--------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccc
Q 004232          641 IVSEDINSVG-GKQEDPNS--------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       641 ~~~~~~~~~~-~~~~~~~~--------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      +......... .....+..        ...++.++|||||||++|||+| |+.||.....  .+....+.. ..  ....
T Consensus       411 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--~~~~~~i~~-~~--~~~~  485 (535)
T 2h8h_A          411 RLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVER-GY--RMPC  485 (535)
T ss_dssp             TTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--HHHHHHHHT-TC--CCCC
T ss_pred             eecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-CC--CCCC
Confidence            7654321100 00000111        1345668999999999999999 8989864322  122222211 11  1111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      +   ...+    ..+.+|+.+||+.||++||||++|++.|+.+...
T Consensus       486 ~---~~~~----~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          486 P---PECP----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             C---CCCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence            1   1111    2477899999999999999999999999987543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-36  Score=329.07  Aligned_cols=254  Identities=21%  Similarity=0.360  Sum_probs=188.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ..++|++.+.||+|+||.||+|+.      .++..||||.+.... ....+.+.+|+.+++++ +||||+++++++.+.+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            457788999999999999999985      246689999997542 33457789999999999 8999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPG--------------------KVLNWSERLAVLIGVAKAVQFLHTGVIP  612 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~ia~gL~yLH~~~~~  612 (766)
                              ..++||||+++|+|.+++......                    ..+++..+..++.+++.||+|||+.   
T Consensus       123 --------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---  191 (344)
T 1rjb_A          123 --------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---  191 (344)
T ss_dssp             --------SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             --------ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---
Confidence                    579999999999999999764321                    2378999999999999999999997   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-C
Q 004232          613 GFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-G  681 (766)
Q Consensus       613 ~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G  681 (766)
                      +|+||||||+||+++.++.+||+|||++.........   .       +..++......++.++|||||||++|||+| |
T Consensus       192 ~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g  271 (344)
T 1rjb_A          192 SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG  271 (344)
T ss_dssp             TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred             CcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999654322110   0       001110112345668899999999999998 9


Q ss_pred             CCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       682 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ..||.......  ............  ..+   ...+    ..+.+++.+||+.||.+|||+.||++.|+.+...
T Consensus       272 ~~p~~~~~~~~--~~~~~~~~~~~~--~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          272 VNPYPGIPVDA--NFYKLIQNGFKM--DQP---FYAT----EEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             CCSSTTCCCSH--HHHHHHHTTCCC--CCC---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CCCcccCCcHH--HHHHHHhcCCCC--CCC---CCCC----HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence            99986433211  111111111110  011   1111    2377899999999999999999999999987653

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3.1e-36  Score=321.17  Aligned_cols=253  Identities=20%  Similarity=0.281  Sum_probs=182.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|+..+|+.||||++....  ....+.+.+|++++++++||||+++++++.+..       
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-------   92 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSER-------   92 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSS-------
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCC-------
Confidence            46788999999999999999998889999999986543  223567889999999999999999999988653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++ +|.+++.+..  ..+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        93 -~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~  165 (311)
T 3niz_A           93 -CLTLVFEFMEK-DLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGL  165 (311)
T ss_dssp             -CEEEEEECCSE-EHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             -EEEEEEcCCCC-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcC
Confidence             68999999995 8888776543  3488999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc----ccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccccc
Q 004232          640 SIVSEDINSV----GGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       640 a~~~~~~~~~----~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  709 (766)
                      ++........    .++.  ..|.   ....++.++|||||||++|||+||+.||...... ....+.............
T Consensus       166 a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  245 (311)
T 3niz_A          166 ARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWP  245 (311)
T ss_dssp             CEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSG
T ss_pred             ceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhh
Confidence            9764321111    0010  0111   1123566889999999999999999998743322 111111111110000000


Q ss_pred             ---c------cc--ccCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 ---D------PV--VMATSSLE-----SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 ---d------~~--~~~~~~~~-----~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         +      ..  ........     ....+.+++.+|++.||.+|||++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          246 QVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             GGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence               0      00  00000000     1134678999999999999999999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.3e-36  Score=316.69  Aligned_cols=243  Identities=20%  Similarity=0.288  Sum_probs=177.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--------------------------hhHHHHHHHHHHHH
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--------------------------YTVRNLKLRLDLLA  534 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------------------------~~~~~~~~e~~~l~  534 (766)
                      .++|++.+.||+|+||.||+|+. .+++.||||++.....                          ...+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            46788999999999999999985 4689999999865431                          11356889999999


Q ss_pred             hCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 004232          535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGF  614 (766)
Q Consensus       535 ~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  614 (766)
                      +++||||+++++++.+...      ...++||||+++|+|.+++..    ..+++.....++.|++.||+|||+.   +|
T Consensus        92 ~l~h~~iv~~~~~~~~~~~------~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i  158 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNE------DHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHYQ---KI  158 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSS------SEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             hCCCCCCCeEEEEEEcCCC------CEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence            9999999999999986431      368999999999999886543    3489999999999999999999997   89


Q ss_pred             ccCCCCCCceEEcCCCcEEEecCCCCccccccccc-----ccCC-CCCCccc--C---CCCCCCEeehhHHHHHHhcCCC
Q 004232          615 FNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-----GGKQ-EDPNSWE--M---TKLEDDVFSFGFMLLESVAGPS  683 (766)
Q Consensus       615 vHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~-----~~~~-~~~~~~~--~---~~~~~DV~SfGvil~ElltG~~  683 (766)
                      +||||||+||+++.++.+||+|||++.........     +... ..|....  .   .+.++|||||||++|||++|+.
T Consensus       159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~  238 (298)
T 2zv2_A          159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQC  238 (298)
T ss_dssp             ECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSC
T ss_pred             eccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCC
Confidence            99999999999999999999999999654332110     1100 1111111  1   1346799999999999999999


Q ss_pred             ccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          684 VAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       684 p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ||.....  ......+....  ....++   ...+    ..+.+++.+||+.||.+||++.||++
T Consensus       239 pf~~~~~--~~~~~~~~~~~--~~~~~~---~~~~----~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          239 PFMDERI--MCLHSKIKSQA--LEFPDQ---PDIA----EDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             SSCCSSH--HHHHHHHHHCC--CCCCSS---SCCC----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCCccH--HHHHHHHhccc--CCCCCc---cccC----HHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            9864322  11111111111  111111   1112    23678999999999999999999864

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.4e-36  Score=322.23  Aligned_cols=245  Identities=16%  Similarity=0.231  Sum_probs=185.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||+|.+.... ...+.+.+|+.++++++||||+++++++.+.+        
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--------   74 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESME--------   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--------
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCC--------
Confidence            467889999999999999999864 68899999987543 34567889999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE--HRIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~--~~~~kl~DFG  638 (766)
                      ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.  ++.+||+|||
T Consensus        75 ~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg  149 (321)
T 1tki_A           75 ELVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             EEEEEEEeCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence            7899999999999999997543  3488999999999999999999997   8999999999999997  7899999999


Q ss_pred             CCcccccccccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ++...............+.       ....++.++|||||||++|||++|..||.....  ......+....  ... ++
T Consensus       150 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~--~~~-~~  224 (321)
T 1tki_A          150 QARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAE--YTF-DE  224 (321)
T ss_dssp             TCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCC-CH
T ss_pred             CCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--HHHHHHHHcCC--CCC-Ch
Confidence            9976533221111001111       112235678999999999999999999864332  22222221111  011 11


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       225 ~~~~~~s----~~~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          225 EAFKEIS----IEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             HHHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hhhccCC----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1111111    236789999999999999999999874

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=6.5e-36  Score=320.39  Aligned_cols=244  Identities=23%  Similarity=0.336  Sum_probs=181.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+.+       
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~-------   78 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN-------   78 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSS-------
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-------
Confidence            367899999999999999999865 789999999865432 23467889999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++...   ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        79 -~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~  151 (323)
T 3tki_A           79 -IQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL  151 (323)
T ss_dssp             -EEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             -eEEEEEEcCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeec
Confidence             689999999999999998754   3489999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc------ccCC--CCCCcc---cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          640 SIVSEDINSV------GGKQ--EDPNSW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       640 a~~~~~~~~~------~~~~--~~~~~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ++........      .++.  ..|...   ...+.++|||||||++|||+||+.||.......... .......   ..
T Consensus       152 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~-~~~~~~~---~~  227 (323)
T 3tki_A          152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-SDWKEKK---TY  227 (323)
T ss_dssp             CEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHH-HHHHTTC---TT
T ss_pred             cceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHH-HHHhccc---cc
Confidence            9654221110      0000  011111   112446899999999999999999997543321211 1111110   00


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+  ....+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       228 ~~~--~~~~~----~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          228 LNP--WKKID----SAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             STT--GGGSC----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCc--cccCC----HHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            111  00111    236789999999999999999999764

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.5e-36  Score=318.25  Aligned_cols=249  Identities=21%  Similarity=0.405  Sum_probs=189.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|+..++..||||.+.... ...+.+.+|++++++++||||+++++++.+.         .
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---------~   81 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE---------P   81 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---------S
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcCC---------C
Confidence            46788899999999999999998888899999987543 2356789999999999999999999998643         4


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.... ...+++..+..++.+++.||+|||+.   +|+||||||+||++++++.+||+|||++.
T Consensus        82 ~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           82 IYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             CEEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cEEEEecCCCCCHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            799999999999999986532 12488999999999999999999997   89999999999999999999999999997


Q ss_pred             cccccccccc-CCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVGG-KQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~~-~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .......... ....+..+        ..++.++|||||||++|||+| |+.|+.....  ......+.. ..  ....+
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~-~~--~~~~~  232 (279)
T 1qpc_A          158 LIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN--PEVIQNLER-GY--RMVRP  232 (279)
T ss_dssp             ECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHT-TC--CCCCC
T ss_pred             cccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH--HHHHHHHhc-cc--CCCCc
Confidence            6543211110 00000011        234457899999999999999 8888864322  111111111 10  11111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                         ...+    ..+.+++.+||+.||.+|||+++|++.|+++...
T Consensus       233 ---~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          233 ---DNCP----EELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             ---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---cccc----HHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence               1111    2477899999999999999999999999987654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=3.4e-36  Score=317.37  Aligned_cols=250  Identities=20%  Similarity=0.376  Sum_probs=180.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+..  ..||||+++..  .....+.+.+|++++++++||||+++++++...        
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--------   92 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP--------   92 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--------
T ss_pred             ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCC--------
Confidence            356888999999999999999864  35999998654  344567899999999999999999999976543        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        93 -~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~  166 (289)
T 3og7_A           93 -QLAIVTQWCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGL  166 (289)
T ss_dssp             -SCEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC-
T ss_pred             -ccEEEEEecCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEcccee
Confidence             5799999999999999986543  3489999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc------ccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          640 SIVSEDINSV------GGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       640 a~~~~~~~~~------~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      +.........      .++.  ..|..     ...++.++|||||||++|||++|+.||......  ..+..........
T Consensus       167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~  244 (289)
T 3og7_A          167 ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIEMVGRGSLS  244 (289)
T ss_dssp             -----------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH--HHHHHHHHHTSCC
T ss_pred             ccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH--HHHHHHhcccccC
Confidence            8654321100      0010  01110     123445789999999999999999998643221  1111111111111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .... ......    ...+.+++.+||+.||.+|||+.||+++|+++.
T Consensus       245 ~~~~-~~~~~~----~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          245 PDLS-KVRSNC----PKRMKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             CCTT-SSCTTS----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             cchh-hccccC----CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence            1000 011111    234778999999999999999999999999864

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.2e-36  Score=320.55  Aligned_cols=252  Identities=21%  Similarity=0.387  Sum_probs=184.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +.|++.+.||+|+||.||+|++     .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.++   
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~---   97 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGG---   97 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC---
Confidence            4477889999999999999984     368999999997543 3345789999999999999999999999987532   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         +..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        98 ---~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D  169 (302)
T 4e5w_A           98 ---NGIKLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGD  169 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECC
T ss_pred             ---ceEEEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECc
Confidence               35899999999999999996543  3488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccc------------hH
Q 004232          637 YGLSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF------------LQ  693 (766)
Q Consensus       637 FGla~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~------------~~  693 (766)
                      ||++.........   ......+..+        ..++.++|||||||++|||+||..|+......            ..
T Consensus       170 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~  249 (302)
T 4e5w_A          170 FGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTV  249 (302)
T ss_dssp             CTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHH
T ss_pred             ccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCH
Confidence            9999765432211   0000111111        12334789999999999999999886421110            00


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .............     ......    ...+.+++.+||+.||.+|||+.||+++|+.+.
T Consensus       250 ~~~~~~~~~~~~~-----~~~~~~----~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          250 TRLVNTLKEGKRL-----PCPPNC----PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHHHTTCCC-----CCCTTC----CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCC-----CCCCCC----CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            0011000000000     001111    134778999999999999999999999999875

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1e-35  Score=323.81  Aligned_cols=246  Identities=17%  Similarity=0.293  Sum_probs=185.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|++.+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|+.++++++|||||++++++.+.+     
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~-----  101 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES-----  101 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----
Confidence            3467999999999999999999864 68999999996542  344677899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEE
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RIAKL  634 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~~kl  634 (766)
                         ..++||||+++|+|.+++....   .+++.....++.||+.||+|||+.   +|+||||||+|||++.+   +.+||
T Consensus       102 ---~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl  172 (362)
T 2bdw_A          102 ---FHYLVFDLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKL  172 (362)
T ss_dssp             ---EEEEEECCCCSCBHHHHHTTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEE
T ss_pred             ---EEEEEEecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEE
Confidence               7899999999999999887543   488999999999999999999997   89999999999999865   45999


Q ss_pred             ecCCCCcccccccccccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          635 SDYGLSIVSEDINSVGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      +|||++...............+       .....++.++|||||||++|||++|+.||.....  ...+..+...  ...
T Consensus       173 ~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~--~~~  248 (362)
T 2bdw_A          173 ADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAG--AYD  248 (362)
T ss_dssp             CCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT--CCC
T ss_pred             eecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhC--CCC
Confidence            9999997654322111111111       1113456789999999999999999999864332  1222222111  111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...+.. ...+    ..+.+++.+||+.||.+||++.|+++.
T Consensus       249 ~~~~~~-~~~~----~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          249 YPSPEW-DTVT----PEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             CCTTGG-GGSC----HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CCcccc-cCCC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            111111 1111    236789999999999999999998864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=322.80  Aligned_cols=247  Identities=22%  Similarity=0.356  Sum_probs=183.2

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCce----EEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTS----VAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~----vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ++|++.+.||+|+||.||+|+.. +++.    ||+|.+... .....+.+.+|+.++++++||||++++++|.+.     
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----   89 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   89 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS-----
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC-----
Confidence            56888999999999999999853 4544    577777543 234567899999999999999999999999864     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++|+||+++|+|.+++.+..  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        90 ----~~~~v~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~D  160 (327)
T 3lzb_A           90 ----TVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITD  160 (327)
T ss_dssp             ----SEEEEECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ----CceEEEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEcc
Confidence                4789999999999999997653  3488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccccc----CC----CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSVGG----KQ----EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~~~----~~----~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++..........    .+    ..|  .....++.++|||||||++|||+| |+.||...........  + .... 
T Consensus       161 fG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~--~-~~~~-  236 (327)
T 3lzb_A          161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSI--L-EKGE-  236 (327)
T ss_dssp             TTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHH--H-HTTC-
T ss_pred             CcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH--H-HcCC-
Confidence            999976432211100    00    001  111345668899999999999999 9999875433222111  1 1111 


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                       ....+   ...+    ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       237 -~~~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          237 -RLPQP---PICT----IDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -CCCCC---TTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             -CCCCC---ccCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence             11111   1111    236789999999999999999999999998874

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=321.73  Aligned_cols=254  Identities=18%  Similarity=0.294  Sum_probs=189.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+++. .+|+.||||++........+.+.+|++++++++||||+++++++....+    ...
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~----~~~  103 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERG----AKH  103 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEET----TEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccC----CCc
Confidence            35788999999999999999996 5799999999876666667889999999999999999999999874321    113


Q ss_pred             eEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..++||||+++|+|.+++... .....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~  180 (317)
T 2buj_A          104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGS  180 (317)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCc
Confidence            689999999999999988752 1234589999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccc-----------------ccccCCCCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccC---ccchHHHH
Q 004232          640 SIVSEDIN-----------------SVGGKQEDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARK---GQFLQEEL  696 (766)
Q Consensus       640 a~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~---~~~~~~~~  696 (766)
                      +.......                 +..+..++...   ...++.++|||||||++|||++|+.||...   ........
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~  260 (317)
T 2buj_A          181 MNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV  260 (317)
T ss_dssp             CEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH
T ss_pred             chhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh
Confidence            86432110                 00111111111   112356889999999999999999998521   11111111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .   .   ......+   ...+    ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       261 ~---~---~~~~~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~  306 (317)
T 2buj_A          261 Q---N---QLSIPQS---PRHS----SALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP  306 (317)
T ss_dssp             H---C---C--CCCC---TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred             h---c---cCCCCcc---ccCC----HHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence            0   0   0011110   1111    247789999999999999999999999998754

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.3e-36  Score=321.11  Aligned_cols=258  Identities=21%  Similarity=0.355  Sum_probs=187.3

Q ss_pred             CCcCCceecCCceeEEEEEec-----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      |++.+.||+|+||.||++.+.     +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+.     
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~-----  107 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGA-----  107 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTT-----
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCC-----
Confidence            478899999999999998753     68899999997643 3456789999999999999999999999987532     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                       ...++||||+++|+|.+++.+..    +++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       108 -~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg  179 (318)
T 3lxp_A          108 -ASLQLVMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFG  179 (318)
T ss_dssp             -TEEEEEECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGG
T ss_pred             -ceEEEEEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcc
Confidence             36899999999999999997543    88999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh---hcccC
Q 004232          639 LSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---NSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~---~~~~~  704 (766)
                      ++.........   ......+..+        ..++.++|||||||++|||+||+.|+..............   .....
T Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~  259 (318)
T 3lxp_A          180 LAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLR  259 (318)
T ss_dssp             GCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHH
T ss_pred             ccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHH
Confidence            99765432110   0000111111        1234578999999999999999999863221110000000   00000


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..+..+..............+.+++.+||+.||.+|||+.||++.|+.+..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~  310 (318)
T 3lxp_A          260 LTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE  310 (318)
T ss_dssp             HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            000000000000011112347889999999999999999999999998764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=7.4e-36  Score=315.83  Aligned_cols=252  Identities=12%  Similarity=0.127  Sum_probs=187.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++....  ..+.+.+|+.+++++ +|+|++++++++.+..        
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--------   79 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--------   79 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETT--------
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCc--------
Confidence            5688999999999999999985 579999999986543  234578899999999 7999999999987653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-----EEEe
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI-----AKLS  635 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~-----~kl~  635 (766)
                      ..++||||+ +|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.     +||+
T Consensus        80 ~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~  153 (298)
T 1csn_A           80 HNVLVIDLL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVV  153 (298)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             eeEEEEEec-CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEE
Confidence            789999999 999999997643  3489999999999999999999997   8999999999999987765     9999


Q ss_pred             cCCCCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhh
Q 004232          636 DYGLSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSL  699 (766)
Q Consensus       636 DFGla~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~  699 (766)
                      |||+++.........        .....+.       ....++.++|||||||++|||+||+.||...... ....+..+
T Consensus       154 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~  233 (298)
T 1csn_A          154 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI  233 (298)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHH
T ss_pred             ECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHH
Confidence            999997654321110        0000110       1123456789999999999999999998753221 11111111


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .....  ....+......+    ..+.+++.+||+.||.+||++++|++.|+++...
T Consensus       234 ~~~~~--~~~~~~~~~~~~----~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          234 GEKKQ--STPLRELCAGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             HHHHH--HSCHHHHTTTSC----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             Hhhcc--CccHHHHHhhCc----HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence            11100  000011111111    2477899999999999999999999999988754

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.4e-36  Score=320.84  Aligned_cols=262  Identities=19%  Similarity=0.308  Sum_probs=184.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHh--CCCCCcccccceeecCCCCCCcC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAK--LRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~--l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..++|++.+.||+|+||.||+|+.. ++.||||++....   ...+.+|.+++..  ++||||+++++++.+..+.    
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~----  106 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGS----  106 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG----
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC----
Confidence            4467999999999999999999875 8999999986432   2344455555554  4999999999999876321    


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCcccCCCCCCceEEcCCCcEE
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV-----IPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrdlk~~NILld~~~~~k  633 (766)
                      ....++||||+++|+|.+++++.    .+++..+..++.+++.||+|||+..     .++|+||||||+||+++.++.+|
T Consensus       107 ~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k  182 (337)
T 3mdy_A          107 WTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC  182 (337)
T ss_dssp             GCEEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred             CCceEEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence            13689999999999999999754    3889999999999999999999852     24799999999999999999999


Q ss_pred             EecCCCCccccccccc--------ccCC--CCCCc--ccCCCC------CCCEeehhHHHHHHhcC----------CCcc
Q 004232          634 LSDYGLSIVSEDINSV--------GGKQ--EDPNS--WEMTKL------EDDVFSFGFMLLESVAG----------PSVA  685 (766)
Q Consensus       634 l~DFGla~~~~~~~~~--------~~~~--~~~~~--~~~~~~------~~DV~SfGvil~ElltG----------~~p~  685 (766)
                      |+|||+++........        .++.  ..|..  ......      ++|||||||++|||+||          +.|+
T Consensus       183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~  262 (337)
T 3mdy_A          183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPY  262 (337)
T ss_dssp             ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred             EEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccH
Confidence            9999999654321111        0000  01110  011222      38999999999999999          5555


Q ss_pred             ccCc--cchHHHHhhhhcccCccccccccccC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          686 ARKG--QFLQEELDSLNSQEGRQRLVDPVVMA-TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       686 ~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      ....  ................    .+.... ....+....+.+++.+||+.||.+|||+.||++.|+.+.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  334 (337)
T 3mdy_A          263 HDLVPSDPSYEDMREIVCIKKL----RPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD  334 (337)
T ss_dssp             TTTSCSSCCHHHHHHHHTTSCC----CCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred             hhhcCCCCchhhhHHHHhhhcc----CccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence            3211  1111111111111111    111110 1112455668899999999999999999999999999876543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.9e-36  Score=323.21  Aligned_cols=240  Identities=21%  Similarity=0.323  Sum_probs=181.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|..+++.+ +||||+++++++.+.+    
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~----   97 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPD----   97 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS----
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCC----
Confidence            578999999999999999999864 68999999997542   23456788899999988 6999999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|..++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+|
T Consensus        98 ----~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~D  167 (353)
T 3txo_A           98 ----RLFFVMEFVNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLAD  167 (353)
T ss_dssp             ----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ----EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEcc
Confidence                7899999999999999997653   388999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc-cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSVG-GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~~-~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+++......... .....+.       ....++.++|||||||++|||++|+.||.....  ......+....    .
T Consensus       168 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~~----~  241 (353)
T 3txo_A          168 FGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE--DDLFEAILNDE----V  241 (353)
T ss_dssp             CTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC----C
T ss_pred             ccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH--HHHHHHHHcCC----C
Confidence            99997532211110 0001111       112356789999999999999999999974332  22222222211    1


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH------HHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSF------EDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~------~ev~~  748 (766)
                      .-|.   ..+    ..+.+++.+|++.||.+||++      .||++
T Consensus       242 ~~p~---~~~----~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          242 VYPT---WLH----EDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             CCCT---TSC----HHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             CCCC---CCC----HHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            1111   111    236789999999999999998      66654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=8.7e-36  Score=326.72  Aligned_cols=246  Identities=17%  Similarity=0.266  Sum_probs=187.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.|++.+.||+|+||.||+|+.. +|+.||+|.+..........+.+|+++|++++|||||++++++.+..        
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--------  121 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--------  121 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--------
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCC--------
Confidence            467999999999999999999864 68999999998766556678999999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE--HRIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~--~~~~kl~DFG  638 (766)
                      ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.  ++.+||+|||
T Consensus       122 ~~~lv~E~~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG  196 (387)
T 1kob_A          122 EMVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFG  196 (387)
T ss_dssp             EEEEEEECCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred             EEEEEEEcCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecc
Confidence            7899999999999999987542  3489999999999999999999997   8999999999999984  4789999999


Q ss_pred             CCcccccccccc---cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVG---GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~---~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +++.........   ++    .++......++.++|||||||++|||+||+.||.....  ......+....  .. .++
T Consensus       197 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~~~--~~-~~~  271 (387)
T 1kob_A          197 LATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCD--WE-FDE  271 (387)
T ss_dssp             TCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCC--CC-CCS
T ss_pred             cceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CC-CCc
Confidence            997653321111   11    11111112345678999999999999999999874332  12222221111  01 111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       272 ~~~~~~s----~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          272 DAFSSVS----PEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             STTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cccccCC----HHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            1111112    236789999999999999999999863

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=3.9e-36  Score=320.80  Aligned_cols=263  Identities=22%  Similarity=0.347  Sum_probs=195.8

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCccccc
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLL  545 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~  545 (766)
                      ...++....++|++.+.||+|+||.||+|+.      .+++.||||.++... ....+.+.+|+.+++++ +||||++++
T Consensus        18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   97 (316)
T 2xir_A           18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   97 (316)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence            3444555567899999999999999999974      356889999997643 34457789999999999 799999999


Q ss_pred             ceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q 004232          546 GHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIP  612 (766)
Q Consensus       546 g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  612 (766)
                      ++|.+.+       ...++||||+++|+|.+++.....             ...+++..+..++.+++.||+|||+.   
T Consensus        98 ~~~~~~~-------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---  167 (316)
T 2xir_A           98 GACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---  167 (316)
T ss_dssp             EEECCTT-------SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             EEEecCC-------CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---
Confidence            9988654       257999999999999999976532             12278999999999999999999997   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-C
Q 004232          613 GFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-G  681 (766)
Q Consensus       613 ~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G  681 (766)
                      +|+||||||+||+++.++.+||+|||+++........   .       +..++......++.++|||||||++|||+| |
T Consensus       168 ~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g  247 (316)
T 2xir_A          168 KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG  247 (316)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             CcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999999998654321110   0       000110112345668899999999999999 9


Q ss_pred             CCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       682 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      +.|+....... .....+.. ......  +   ...+    ..+.+++.+||+.||.+|||+.||++.|+.+.+..
T Consensus       248 ~~p~~~~~~~~-~~~~~~~~-~~~~~~--~---~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  312 (316)
T 2xir_A          248 ASPYPGVKIDE-EFCRRLKE-GTRMRA--P---DYTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  312 (316)
T ss_dssp             CCSSTTCCCSH-HHHHHHHH-TCCCCC--C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcccchhH-HHHHHhcc-CccCCC--C---CCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            99986432211 11111111 111111  1   1111    23678899999999999999999999999987643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.4e-36  Score=323.66  Aligned_cols=251  Identities=14%  Similarity=0.177  Sum_probs=187.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+. .+|+.||||.+.....  .+.+.+|+.+++++ +||||+++++++.+..        
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~--------   78 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGK--------   78 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETT--------
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCC--------
Confidence            5688899999999999999985 5799999999865432  24588999999999 9999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc-----EEEe
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI-----AKLS  635 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~-----~kl~  635 (766)
                      ..++||||+ +|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.     +||+
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~  152 (330)
T 2izr_A           79 YNAMVLELL-GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHII  152 (330)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEEC
T ss_pred             ccEEEEEeC-CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEE
Confidence            689999999 999999997642  3589999999999999999999997   8999999999999998887     9999


Q ss_pred             cCCCCccccccccc--------ccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhh
Q 004232          636 DYGLSIVSEDINSV--------GGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSL  699 (766)
Q Consensus       636 DFGla~~~~~~~~~--------~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~  699 (766)
                      |||+++........        ......+.       ....++.++|||||||++|||+||+.||...... ....+..+
T Consensus       153 DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i  232 (330)
T 2izr_A          153 DFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKI  232 (330)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHH
T ss_pred             EcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHH
Confidence            99999754322110        00001111       1123455789999999999999999999753221 22222221


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ....  .....+......     ..+.+++.+||+.||.+||++++|.+.|+++...
T Consensus       233 ~~~~--~~~~~~~~~~~~-----p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          233 GDTK--RATPIEVLCENF-----PEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             HHHH--HHSCHHHHTTTC-----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             Hhhh--ccCCHHHHhccC-----hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            1100  000000001111     1478899999999999999999999999987753

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.1e-35  Score=321.85  Aligned_cols=242  Identities=25%  Similarity=0.337  Sum_probs=183.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|+..+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|++++++++|||||+++++|.+.+      
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~------  127 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH------  127 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT------
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC------
Confidence            4488889999999999999985 57999999998643   2334577899999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||++ |++.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       128 --~~~lv~e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG  199 (348)
T 1u5q_A          128 --TAWLVMEYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFG  199 (348)
T ss_dssp             --EEEEEEECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred             --eEEEEEecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeecc
Confidence              7899999998 68888775432  3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccccCC--CCCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVGGKQ--EDPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~~~~--~~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ++..........++.  ..|.     ....++.++|||||||++|||+||+.|+.....  ......+.... ...... 
T Consensus       200 ~a~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~--~~~~~~~~~~~-~~~~~~-  275 (348)
T 1u5q_A          200 SASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNE-SPALQS-  275 (348)
T ss_dssp             TCBSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSC-CCCCCC-
T ss_pred             CceecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHHhcC-CCCCCC-
Confidence            997654332221111  1111     123456688999999999999999999864322  12222221111 111111 


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ...+    ..+.+++.+||+.||.+|||++|+++.
T Consensus       276 ---~~~~----~~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          276 ---GHWS----EYFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             ---TTSC----HHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             ---CCCC----HHHHHHHHHHcccChhhCcCHHHHhhC
Confidence               1112    236788999999999999999999864

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.5e-36  Score=325.03  Aligned_cols=256  Identities=20%  Similarity=0.319  Sum_probs=192.0

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCccccccee
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHC  548 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~  548 (766)
                      +++....++|++.+.||+|+||.||+|+..      +++.||||.+.... ......+.+|+.++++++||||+++++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   97 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   97 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence            344455678999999999999999999754      47889999997543 34456789999999999999999999999


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCC-------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCC
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKT  621 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~  621 (766)
                      .+.+        ..++||||+++|+|.+++....       ....+++..+..++.+++.||+|||+.   +|+||||||
T Consensus        98 ~~~~--------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp  166 (322)
T 1p4o_A           98 SQGQ--------PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAA  166 (322)
T ss_dssp             CSSS--------SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSG
T ss_pred             ccCC--------ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCcc
Confidence            7653        5799999999999999987532       113468999999999999999999997   899999999


Q ss_pred             CceEEcCCCcEEEecCCCCccccccccc--ccC------CCCCC--cccCCCCCCCEeehhHHHHHHhc-CCCccccCcc
Q 004232          622 NNILLNEHRIAKLSDYGLSIVSEDINSV--GGK------QEDPN--SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQ  690 (766)
Q Consensus       622 ~NILld~~~~~kl~DFGla~~~~~~~~~--~~~------~~~~~--~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~  690 (766)
                      +||+++.++.+||+|||++.........  ...      ...|.  ....++.++|||||||++|||+| |+.|+.....
T Consensus       167 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~  246 (322)
T 1p4o_A          167 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN  246 (322)
T ss_dssp             GGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH
T ss_pred             ceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH
Confidence            9999999999999999999654322111  000      00111  11345667899999999999999 7888764322


Q ss_pred             chHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          691 FLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                        ......+.. ......     ....+    ..+.+++.+||+.||.+|||+.||++.|+++.
T Consensus       247 --~~~~~~~~~-~~~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          247 --EQVLRFVME-GGLLDK-----PDNCP----DMLFELMRMCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             --HHHHHHHHT-TCCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             --HHHHHHHHc-CCcCCC-----CCCCC----HHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence              111111111 111111     01111    23678999999999999999999999998764

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1e-35  Score=322.63  Aligned_cols=245  Identities=19%  Similarity=0.318  Sum_probs=182.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh-----hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK-----YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-----~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++.....     ...+.+.+|+.++++++||||+++++++.+.+    
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~----   99 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG----   99 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC----
Confidence            4688999999999999999986 4689999999864321     23578999999999999999999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---E
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI---A  632 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~---~  632 (766)
                          ..++||||+++|+|.+++.+.. ....+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.   +
T Consensus       100 ----~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~v  172 (351)
T 3c0i_A          100 ----MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPV  172 (351)
T ss_dssp             ----EEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCE
T ss_pred             ----EEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcE
Confidence                7899999999999988776432 233578999999999999999999997   8999999999999986554   9


Q ss_pred             EEecCCCCcccccccccc----cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          633 KLSDYGLSIVSEDINSVG----GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~----~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ||+|||++..........    ++    .++......++.++|||||||++|||+||+.||.......   ...+.... 
T Consensus       173 kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~i~~~~-  248 (351)
T 3c0i_A          173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERL---FEGIIKGK-  248 (351)
T ss_dssp             EECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHH---HHHHHHTC-
T ss_pred             EEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHH---HHHHHcCC-
Confidence            999999997654322111    01    0111111335678899999999999999999997532211   11111111 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       .. .++......+    ..+.+++.+||+.||.+|||+.|+++
T Consensus       249 -~~-~~~~~~~~~s----~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          249 -YK-MNPRQWSHIS----ESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             -CC-CCHHHHTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -CC-CCccccccCC----HHHHHHHHHHCCCChhHCcCHHHHhc
Confidence             01 1111111111    23678999999999999999999985

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.4e-35  Score=316.19  Aligned_cols=257  Identities=19%  Similarity=0.334  Sum_probs=183.0

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ..++|.+.+.||+|+||.||+|+..    ++..||||.++..  .....+.+.+|+.++++++||||+++++++.+.+..
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            4567888899999999999999854    3458999998754  334467799999999999999999999999875421


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcC---CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISEN---TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                         .....++||||+++|+|.+++...   .....+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.
T Consensus       112 ---~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~  185 (313)
T 3brb_A          112 ---GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMT  185 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSC
T ss_pred             ---CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCc
Confidence               112469999999999999998532   1234589999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccc--ccCCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhh
Q 004232          632 AKLSDYGLSIVSEDINSV--GGKQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~--~~~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~  700 (766)
                      +||+|||++.........  .....      .|  .....++.++|||||||++|||+| |..|+.........  ..+.
T Consensus       186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~--~~~~  263 (313)
T 3brb_A          186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMY--DYLL  263 (313)
T ss_dssp             EEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH--HHHH
T ss_pred             EEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH--HHHH
Confidence            999999998654322110  00000      01  011334567899999999999999 88888643322111  1111


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      . ......     ....+    ..+.+++.+||+.||.+||++.+|++.|+.+.+
T Consensus       264 ~-~~~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~  308 (313)
T 3brb_A          264 H-GHRLKQ-----PEDCL----DELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLE  308 (313)
T ss_dssp             T-TCCCCC-----BTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             c-CCCCCC-----Ccccc----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            1 111111     11111    247789999999999999999999999998865

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=6e-36  Score=313.47  Aligned_cols=250  Identities=22%  Similarity=0.389  Sum_probs=184.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|+.. |+.||||.++...  ..+.+.+|++++++++||||+++++++.+..       ..
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------~~   89 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-------GG   89 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---------C
T ss_pred             hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC-------Cc
Confidence            467888999999999999999874 8899999997543  4567899999999999999999999987643       25


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++.
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  165 (278)
T 1byg_A           90 LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK  165 (278)
T ss_dssp             CEEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             eEEEEecCCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccc
Confidence            799999999999999987542 12378889999999999999999997   89999999999999999999999999986


Q ss_pred             ccccccccccCC---CCCC--cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          642 VSEDINSVGGKQ---EDPN--SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       642 ~~~~~~~~~~~~---~~~~--~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ............   ..|.  ....++.++|||||||++|||+| |+.|+........  ...+.. ...     +....
T Consensus       166 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~--~~~~~~-~~~-----~~~~~  237 (278)
T 1byg_A          166 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVEK-GYK-----MDAPD  237 (278)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH--HHHHTT-TCC-----CCCCT
T ss_pred             cccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHhc-CCC-----CCCcc
Confidence            543321111100   0111  11335567899999999999999 9999864332111  111111 101     11111


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ..+    ..+.+++.+||+.||.+||++.|+++.|+.+...+
T Consensus       238 ~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~  275 (278)
T 1byg_A          238 GCP----PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE  275 (278)
T ss_dssp             TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cCC----HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence            112    34778999999999999999999999999987543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.9e-36  Score=318.77  Aligned_cols=251  Identities=23%  Similarity=0.388  Sum_probs=192.6

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..++|++.+.||+|+||.||+|+.. ++..||||.+.... ...+.+.+|++++++++||||+++++++.+.+       
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-------   82 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-------   82 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-------
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-------
Confidence            4567888999999999999999975 48899999997543 34578899999999999999999999987653       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        83 -~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~  157 (288)
T 3kfa_A           83 -PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL  157 (288)
T ss_dssp             -SEEEEEECCTTEEHHHHHHHCC-TTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCG
T ss_pred             -CEEEEEEcCCCCcHHHHHHhcc-cCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCcc
Confidence             6899999999999999997643 24589999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc---------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccc
Q 004232          640 SIVSEDINSVG---------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       640 a~~~~~~~~~~---------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      +..........         ...++......++.++|||||||++|||++ |..|+..........  .+.. ..  ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~--~~~~-~~--~~~  232 (288)
T 3kfa_A          158 SRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYE--LLEK-DY--RME  232 (288)
T ss_dssp             GGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH--HHHT-TC--CCC
T ss_pred             ceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHH--HHhc-cC--CCC
Confidence            86543221110         001111111345567899999999999999 888886433222111  1111 10  001


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .+   ...+    ..+.+++.+|++.||.+|||+.||++.|+.+.+.
T Consensus       233 ~~---~~~~----~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          233 RP---EGCP----EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             CC---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC---CCCC----HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence            11   1111    3477899999999999999999999999987753

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=7.3e-36  Score=326.39  Aligned_cols=240  Identities=21%  Similarity=0.351  Sum_probs=182.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||.||+|+.. +++.||+|.+....   ....+.+.+|+.+|++++|||||++++++.+.+      
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~------   88 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEE------   88 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS------
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC------
Confidence            57889999999999999999864 68899999986532   233577889999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++|+|..++.+..   .+++.....++.+++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        89 --~~~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG  160 (384)
T 4fr4_A           89 --DMFMVVDLLLGGDLRYHLQQNV---HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFN  160 (384)
T ss_dssp             --EEEEEECCCTTEEHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             --EEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccc
Confidence              7899999999999999997643   488999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc---cCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-HhhhhcccCccc
Q 004232          639 LSIVSEDINSVG---GKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-LDSLNSQEGRQR  707 (766)
Q Consensus       639 la~~~~~~~~~~---~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-~~~~~~~~~~~~  707 (766)
                      +++.........   ++.  ..|..     ...++.++|||||||++|||+||+.||.......... ...+...  ...
T Consensus       161 ~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~--~~~  238 (384)
T 4fr4_A          161 IAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETT--VVT  238 (384)
T ss_dssp             TCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHC--CCC
T ss_pred             eeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhc--ccC
Confidence            997653321111   111  11111     1235668899999999999999999996433222221 1111110  111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-HHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPS-FEDIL  747 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-~~ev~  747 (766)
                      +  |   ...+    ..+.+++.+||+.||.+||+ +++|.
T Consensus       239 ~--p---~~~s----~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          239 Y--P---SAWS----QEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             C--C---TTSC----HHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             C--C---CcCC----HHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            1  1   1111    23778999999999999998 66654

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-36  Score=323.20  Aligned_cols=240  Identities=21%  Similarity=0.292  Sum_probs=181.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+.||+|+||.||+|+. .+++.||||++.....   ...+.+.+|+.+++.++||||+++++++.+.+     
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~-----   82 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPT-----   82 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-----
Confidence            46788999999999999999995 5789999999864321   22457899999999999999999999998763     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+ +|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||+++++.+||+||
T Consensus        83 ---~~~lv~E~~-~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DF  152 (336)
T 3h4j_B           83 ---DIVMVIEYA-GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADF  152 (336)
T ss_dssp             ---EEEEEECCC-CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCS
T ss_pred             ---EEEEEEECC-CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEe
Confidence               689999999 789999887653   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccccc---CC--CCCCcc--cC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGG---KQ--EDPNSW--EM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~---~~--~~~~~~--~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++...........   +.  ..|...  .. .+.++|||||||++|||++|+.||......      .+...-......
T Consensus       153 G~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~------~~~~~i~~~~~~  226 (336)
T 3h4j_B          153 GLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP------NLFKKVNSCVYV  226 (336)
T ss_dssp             SCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST------TCBCCCCSSCCC
T ss_pred             ccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH------HHHHHHHcCCCC
Confidence            99976543221111   11  011111  11 245789999999999999999998643211      000000000000


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .|   ...+    ..+.+++.+|++.||.+|||++||++.
T Consensus       227 ~p---~~~s----~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          227 MP---DFLS----PGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             CC---TTSC----HHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             Cc---ccCC----HHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            01   1111    236789999999999999999999764

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8.4e-36  Score=325.81  Aligned_cols=239  Identities=18%  Similarity=0.282  Sum_probs=177.4

Q ss_pred             CCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          488 SAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      .+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|++++++++|||||+++++|.+.+        ..++||
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~--------~~~lv~  165 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKN--------DIVLVM  165 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS--------EEEEEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--------EEEEEE
Confidence            56799999999999986 469999999998766666788999999999999999999999998753        789999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE--cCCCcEEEecCCCCcccc
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL--NEHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl--d~~~~~kl~DFGla~~~~  644 (766)
                      ||+++|+|.+++.+..  ..+++..+..++.|++.||+|||+.   +|+||||||+|||+  +.++.+||+|||+++...
T Consensus       166 E~~~~~~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~  240 (373)
T 2x4f_A          166 EYVDGGELFDRIIDES--YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYK  240 (373)
T ss_dssp             ECCTTCEEHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECC
T ss_pred             eCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecC
Confidence            9999999999886542  3488999999999999999999997   89999999999999  567899999999997654


Q ss_pred             cccccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCC
Q 004232          645 DINSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS  717 (766)
Q Consensus       645 ~~~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  717 (766)
                      ...........+.       ....++.++|||||||++|||+||+.||.....  ...+..+....  ..+.++. ....
T Consensus       241 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~~~i~~~~--~~~~~~~-~~~~  315 (373)
T 2x4f_A          241 PREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND--AETLNNILACR--WDLEDEE-FQDI  315 (373)
T ss_dssp             TTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCSCSGG-GTTS
T ss_pred             CccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhcc--CCCChhh-hccC
Confidence            3221111111111       112345578999999999999999999874332  22222222111  1111111 1111


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          718 SLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       718 ~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +    ..+.+++.+|++.||.+||++.|+++
T Consensus       316 ~----~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          316 S----EEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             C----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             C----HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            2    23678999999999999999999987

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-35  Score=315.87  Aligned_cols=240  Identities=20%  Similarity=0.330  Sum_probs=184.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||+||+|+.. +|+.||+|+++...   ....+.+.+|+.+++.++||||+++++++.+..     
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~-----   79 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ-----   79 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS-----
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCC-----
Confidence            357889999999999999999864 69999999997542   233567889999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+||
T Consensus        80 ---~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Df  150 (318)
T 1fot_A           80 ---QIFMIMDYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDF  150 (318)
T ss_dssp             ---EEEEEECCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred             ---EEEEEEeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeec
Confidence               7899999999999999997643   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-ccCCCC--C--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          638 GLSIVSEDINSV-GGKQED--P--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       638 Gla~~~~~~~~~-~~~~~~--~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+++........ .++..+  |  .....++.++|||||||++|||++|+.||.....  ......+....  ..+  | 
T Consensus       151 g~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~~--~~~--p-  223 (318)
T 1fot_A          151 GFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--MKTYEKILNAE--LRF--P-  223 (318)
T ss_dssp             SSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHCC--CCC--C-
T ss_pred             CcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCC--C-
Confidence            999765432211 111110  1  1123456789999999999999999999864322  22222222111  111  1 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                        ...+    ..+.+++.+|++.||.+||     +++||++
T Consensus       224 --~~~~----~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          224 --PFFN----EDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             --TTSC----HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             --CCCC----HHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence              1112    2367899999999999999     8888874

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=9.5e-36  Score=313.74  Aligned_cols=252  Identities=17%  Similarity=0.224  Sum_probs=181.9

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+..+|+.||||++.....  ...+.+.+|++++++++||||+++++++.+.+        
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   73 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK--------   73 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--------
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCC--------
Confidence            46888999999999999999988899999999865432  23467889999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++ +|.+++....  ..+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  147 (288)
T 1ob3_A           74 RLVLVFEHLDQ-DLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLA  147 (288)
T ss_dssp             CEEEEEECCSE-EHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             eEEEEEEecCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccc
Confidence            68999999996 8988887543  3488999999999999999999997   8999999999999999999999999998


Q ss_pred             cccccccc-----cccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCc---c-
Q 004232          641 IVSEDINS-----VGGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGR---Q-  706 (766)
Q Consensus       641 ~~~~~~~~-----~~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~---~-  706 (766)
                      ........     .++.. ..|.   ....++.++|||||||++|||+||+.||....... ...+.........   . 
T Consensus       148 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T 1ob3_A          148 RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN  227 (288)
T ss_dssp             HHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTT
T ss_pred             cccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchh
Confidence            65432111     01100 1111   11235678899999999999999999987433211 1111111000000   0 


Q ss_pred             ----cccccccc-------CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          707 ----RLVDPVVM-------ATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       707 ----~~~d~~~~-------~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          ...++...       ..........+.+++.+|++.||++|||+.|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             GGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                00011000       0000011234678999999999999999999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=7.5e-36  Score=347.47  Aligned_cols=239  Identities=21%  Similarity=0.339  Sum_probs=182.2

Q ss_pred             CceecCCceeEEEEEec---CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||.||+|.+.   .++.||||+++...  ....+++.+|+++|++++|||||+++|+|.+.         ..+
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~---------~~~  445 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE---------SWM  445 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS---------SEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---------CEE
Confidence            47999999999999753   46789999997543  23467899999999999999999999999643         479


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +|||||++|+|.+++.+..   .+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       446 lv~E~~~~g~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~  519 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL  519 (635)
T ss_dssp             EEEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred             EEEEccCCCCHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence            9999999999999997643   489999999999999999999997   8999999999999999999999999999765


Q ss_pred             cccccc---ccCCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          644 EDINSV---GGKQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       644 ~~~~~~---~~~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ......   .....      .|  .....++.++|||||||++|||+| |+.||......  .....+ ........  +
T Consensus       520 ~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i-~~~~~~~~--p  594 (635)
T 4fl3_A          520 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAML-EKGERMGC--P  594 (635)
T ss_dssp             TC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHH-HTTCCCCC--C
T ss_pred             ccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHH-HcCCCCCC--C
Confidence            322110   00000      01  111345668999999999999999 99998743321  111111 11111111  1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                         ...+    ..+.+++.+||+.||.+||+|.+|++.|+...
T Consensus       595 ---~~~~----~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          595 ---AGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             ---TTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             ---CCCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence               1112    34778999999999999999999999999865

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=328.41  Aligned_cols=246  Identities=17%  Similarity=0.260  Sum_probs=185.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|++....  ....+.+.+|+.++++++|||||++++++.+.+     
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~-----   83 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEG-----   83 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSS-----
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECC-----
Confidence            346789999999999999999985 579999999986543  344677899999999999999999999998763     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEE
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKL  634 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---~~~~~kl  634 (766)
                         ..++||||+++|+|.+.+.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++   .++.+||
T Consensus        84 ---~~~lv~E~~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL  154 (444)
T 3soa_A           84 ---HHYLIFDLVTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKL  154 (444)
T ss_dssp             ---EEEEEECCCBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEE
T ss_pred             ---EEEEEEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEE
Confidence               7899999999999999987653   388999999999999999999997   899999999999998   4578999


Q ss_pred             ecCCCCccccccccc----ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          635 SDYGLSIVSEDINSV----GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       635 ~DFGla~~~~~~~~~----~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      +|||++.........    .++    .++......++.++||||+||++|||++|..||.....  ......+...  ..
T Consensus       155 ~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~--~~  230 (444)
T 3soa_A          155 ADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKAG--AY  230 (444)
T ss_dssp             CCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHT--CC
T ss_pred             ccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhC--CC
Confidence            999999655432211    011    11111113456789999999999999999999864332  2222222111  11


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....+.. ...+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       231 ~~~~~~~-~~~s----~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          231 DFPSPEW-DTVT----PEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             CCCTTTT-TTSC----HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCcccc-ccCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            1112211 1112    236789999999999999999999864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-35  Score=312.94  Aligned_cols=248  Identities=20%  Similarity=0.337  Sum_probs=187.5

Q ss_pred             cCCCcCC-ceecCCceeEEEEEec---CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSA-IMGEGSYGKLYKGRLE---NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~-~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|.+.+ .||+|+||.||+|+..   ++..||||.++.. .....+.+.+|++++++++||||+++++++...      
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~------   82 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE------   82 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS------
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCC------
Confidence            3455555 8999999999999853   5788999999764 344567899999999999999999999998432      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        83 ---~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Df  154 (287)
T 1u59_A           83 ---ALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDF  154 (287)
T ss_dssp             ---SEEEEEECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCC
T ss_pred             ---CcEEEEEeCCCCCHHHHHHhCC--ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcc
Confidence               5899999999999999986532  3489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc---cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSVG---GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~~---~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |++..........   .....+..+        ..++.++|||||||++|||+| |+.||......  .....+.. ...
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~-~~~  231 (287)
T 1u59_A          155 GLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQ-GKR  231 (287)
T ss_dssp             TTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHT-TCC
T ss_pred             cceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhc-CCc
Confidence            9997543221110   000001111        224557899999999999999 99998643321  11111111 111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ...     ....+    ..+.+++.+||+.||.+||++.||++.|+.+...
T Consensus       232 ~~~-----~~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  273 (287)
T 1u59_A          232 MEC-----PPECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  273 (287)
T ss_dssp             CCC-----CTTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCC-----CCCcC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            111     11112    2477899999999999999999999999988753

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-35  Score=310.25  Aligned_cols=248  Identities=19%  Similarity=0.308  Sum_probs=183.6

Q ss_pred             CCcCCceecCCceeEEEEEec-C---CceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          485 FDMSAIMGEGSYGKLYKGRLE-N---GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      |...+.||+|+||.||+|+.. +   +..||+|.+.... ....+.+.+|+.++++++||||+++++++.+.+       
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------   95 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPE-------   95 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS-------
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCC-------
Confidence            555689999999999999853 2   2379999987543 345678999999999999999999999998654       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||+.+|+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        96 ~~~~~v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~  170 (298)
T 3pls_A           96 GLPHVLLPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGL  170 (298)
T ss_dssp             SCCEEEECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTS
T ss_pred             CCcEEEEecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCC
Confidence            23489999999999999997633  3578999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccccc----CCCCCC--------cccCCCCCCCEeehhHHHHHHhcCCCcc-ccCccchHHHHhhhhcccCcc
Q 004232          640 SIVSEDINSVGG----KQEDPN--------SWEMTKLEDDVFSFGFMLLESVAGPSVA-ARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       640 a~~~~~~~~~~~----~~~~~~--------~~~~~~~~~DV~SfGvil~ElltG~~p~-~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ++..........    ....+.        ....++.++|||||||++|||+||..|+ ..........  .+.. ..  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~--~~~~-~~--  245 (298)
T 3pls_A          171 ARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTH--FLAQ-GR--  245 (298)
T ss_dssp             SCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHH--HHHT-TC--
T ss_pred             cccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHH--Hhhc-CC--
Confidence            965432211100    000000        1123456789999999999999965554 3222221111  1111 10  


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ....+   ...+    ..+.+++.+||+.||.+|||++|++++|+++...
T Consensus       246 ~~~~~---~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~  288 (298)
T 3pls_A          246 RLPQP---EYCP----DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSA  288 (298)
T ss_dssp             CCCCC---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCC---ccch----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            11111   1111    2377899999999999999999999999998753

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=321.85  Aligned_cols=244  Identities=18%  Similarity=0.231  Sum_probs=173.5

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+.|++.+.||+|+||.||+|+.. +++.||||+++...  ..+.+.+|++++++++||||++++++|.+.+       
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-------  121 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT-------  121 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSS-------
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCC-------
Confidence            3567999999999999999999975 58899999997543  3467889999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~D  636 (766)
                       ..++||||+++|+|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|
T Consensus       122 -~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~D  194 (349)
T 2w4o_A          122 -EISLVLELVTGGELFDRIVEKG---YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIAD  194 (349)
T ss_dssp             -EEEEEECCCCSCBHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECC
T ss_pred             -eEEEEEEeCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEcc
Confidence             7899999999999999987543   488999999999999999999997   8999999999999975   88999999


Q ss_pred             CCCCccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          637 YGLSIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       637 FGla~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      ||+++........    +   +..++......++.++|||||||++|||+||+.||....... .....+....  ....
T Consensus       195 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~i~~~~--~~~~  271 (349)
T 2w4o_A          195 FGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-FMFRRILNCE--YYFI  271 (349)
T ss_dssp             CC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-HHHHHHHTTC--CCCC
T ss_pred             CccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-HHHHHHHhCC--CccC
Confidence            9998754332111    0   111111112345678999999999999999999986433221 1112221111  1111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+. ....+    ..+.+++.+|++.||++|||+.|+++
T Consensus       272 ~~~-~~~~~----~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          272 SPW-WDEVS----LNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             TTT-TTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             Cch-hhhCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            111 11112    23678999999999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-35  Score=354.40  Aligned_cols=256  Identities=31%  Similarity=0.482  Sum_probs=168.4

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +++|++|+|++|.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|+.|+|++|.+++.+|..++.+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            44444555555555445555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCcc
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSG  272 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~  272 (766)
                      |++|++++.+|..+.++++|++|+|++|++++.+|. ++.+++|++|++++|++++.+|..   ...|+.+++++|+++|
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            555555555555555555555555555555544443 444555555555555555444432   2344455555555544


Q ss_pred             CC----------------------------------------------------------------------cccccCCC
Q 004232          273 EI----------------------------------------------------------------------PKQYGQLN  282 (766)
Q Consensus       273 ~~----------------------------------------------------------------------p~~~~~l~  282 (766)
                      .+                                                                      |..++.++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            44                                                                      44455567


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecC
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR  362 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~  362 (766)
                      +|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..++.|+.++++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCcCC
Q 004232          363 GNCLSSNVQN  372 (766)
Q Consensus       363 ~N~l~~~~~~  372 (766)
                      +|.++|.+|.
T Consensus       713 ~N~l~g~iP~  722 (768)
T 3rgz_A          713 NNNLSGPIPE  722 (768)
T ss_dssp             SSEEEEECCS
T ss_pred             CCcccccCCC
Confidence            9999886653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=3.1e-35  Score=313.19  Aligned_cols=256  Identities=17%  Similarity=0.272  Sum_probs=184.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----  105 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDN-----  105 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-----
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC-----
Confidence            35688999999999999999985 57899999998752   3445678899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..++||||+++|+|.+++.... ....+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|
T Consensus       106 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~D  179 (310)
T 2wqm_A          106 ---ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGD  179 (310)
T ss_dssp             ---EEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred             ---cEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEe
Confidence               7899999999999999886421 224588999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc----cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSVG----GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~~----~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||++..........    ++    .++......++.++|||||||++|||++|+.|+.............+.. ......
T Consensus       180 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~  258 (310)
T 2wqm_A          180 LGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQ-CDYPPL  258 (310)
T ss_dssp             C------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHT-TCSCCC
T ss_pred             ccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhc-ccCCCC
Confidence            99986543221110    00    0000111234567899999999999999999986433222222222111 111111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      .    ....+    ..+.+++.+||+.||.+||++.||++.|+.+....
T Consensus       259 ~----~~~~~----~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          259 P----SDHYS----EELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             C----TTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             c----ccccC----HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence            0    01112    23678999999999999999999999999886543

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.9e-35  Score=313.39  Aligned_cols=250  Identities=16%  Similarity=0.235  Sum_probs=185.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||++....   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~-----  107 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG-----  107 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT-----
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC-----
Confidence            478999999999999999999964 68999999987542   233577899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus       108 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Df  178 (309)
T 2h34_A          108 ---QLYVDMRLINGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDF  178 (309)
T ss_dssp             ---EEEEEEECCCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSC
T ss_pred             ---eEEEEEEecCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecC
Confidence               7899999999999999997653   488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc------cc---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          638 GLSIVSEDINS------VG---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       638 Gla~~~~~~~~------~~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      |++........      .+   +..++......++.++|||||||++|||+||+.||.........  ..+.........
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~  256 (309)
T 2h34_A          179 GIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMG--AHINQAIPRPST  256 (309)
T ss_dssp             CC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHH--HHHHSCCCCGGG
T ss_pred             ccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHH--HHhccCCCCccc
Confidence            99865432210      00   11111112234567899999999999999999998743322111  111111000000


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHHHHh
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRP-SFEDILWNLQYAAQ  755 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-s~~ev~~~L~~~~~  755 (766)
                      ..    ...+    ..+.+++.+||+.||.+|| +++++++.|+.+..
T Consensus       257 ~~----~~~~----~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~  296 (309)
T 2h34_A          257 VR----PGIP----VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALA  296 (309)
T ss_dssp             TS----TTCC----THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC
T ss_pred             cC----CCCC----HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHH
Confidence            11    1111    2367889999999999999 99999999998654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5e-36  Score=325.37  Aligned_cols=255  Identities=15%  Similarity=0.180  Sum_probs=185.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec---------CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCccc----------
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE---------NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVC----------  543 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~---------~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~----------  543 (766)
                      ++|.+.+.||+|+||.||+|+..         +++.||||.+...     +.+.+|++++++++|||||+          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            57889999999999999999865         3889999998754     45788999999999999998          


Q ss_pred             -----ccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          544 -----LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       544 -----l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                           +++++...+       ...++||||+ +|+|.+++.... ...+++..+..++.|++.||+|||+.   +|+|||
T Consensus       117 ~~i~~~~~~~~~~~-------~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~D  184 (352)
T 2jii_A          117 LAIPTCMGFGVHQD-------KYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLHEN---EYVHGN  184 (352)
T ss_dssp             CSCCCCCEEEEETT-------TEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSC
T ss_pred             cCccchhhccccCC-------cEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCC
Confidence                 455655432       3789999999 999999998642 23589999999999999999999997   899999


Q ss_pred             CCCCceEEcCCC--cEEEecCCCCcccccccccc-------c-CCCCCC-------cccCCCCCCCEeehhHHHHHHhcC
Q 004232          619 VKTNNILLNEHR--IAKLSDYGLSIVSEDINSVG-------G-KQEDPN-------SWEMTKLEDDVFSFGFMLLESVAG  681 (766)
Q Consensus       619 lk~~NILld~~~--~~kl~DFGla~~~~~~~~~~-------~-~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG  681 (766)
                      |||+||+++.++  .+||+|||+++.........       . ....+.       ....++.++|||||||++|||+||
T Consensus       185 ikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g  264 (352)
T 2jii_A          185 VTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYG  264 (352)
T ss_dssp             CCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhC
Confidence            999999999988  99999999996543321100       0 000111       112345678999999999999999


Q ss_pred             CCccccCccchHHHHhhhh-cccCcccccccccc-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          682 PSVAARKGQFLQEELDSLN-SQEGRQRLVDPVVM-ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       682 ~~p~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      +.||............... .......+.++... ...+    ..+.+++.+||+.||.+||+++||+++|+++.+...
T Consensus       265 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~  339 (352)
T 2jii_A          265 FLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPS----ETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR  339 (352)
T ss_dssp             CCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             CCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCc----HHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence            9998753211111111100 01111222221110 0111    337789999999999999999999999999886543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.7e-35  Score=317.86  Aligned_cols=254  Identities=26%  Similarity=0.462  Sum_probs=188.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCce--EEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTS--VAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~--vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|+.. +|..  ||||.++... ....+.+.+|+++++++ +||||+++++++.+.+     
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~-----   99 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG-----   99 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT-----
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCC-----
Confidence            57888999999999999999854 5664  4999887532 33456789999999999 8999999999998763     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENT-------------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                         ..++||||+++|+|.+++.+..             ....+++..+..++.+++.||+|||+.   +|+||||||+||
T Consensus       100 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NI  173 (327)
T 1fvr_A          100 ---YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNI  173 (327)
T ss_dssp             ---EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred             ---ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceE
Confidence               7899999999999999997642             123589999999999999999999997   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccccccCCCC-----CC--cccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINSVGGKQED-----PN--SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~-----~~--~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                      +++.++.+||+|||+++..............     |.  ....++.++|||||||++|||+| |+.||.....  ....
T Consensus       174 l~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--~~~~  251 (327)
T 1fvr_A          174 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--AELY  251 (327)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHH
T ss_pred             EEcCCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH--HHHH
Confidence            9999999999999998643221111000000     00  11223567899999999999998 9999864322  1222


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET  759 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~  759 (766)
                      ..+.. .....  .+   ...+    ..+.+++.+||+.||.+||++.|+++.|+.+......
T Consensus       252 ~~~~~-~~~~~--~~---~~~~----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~  304 (327)
T 1fvr_A          252 EKLPQ-GYRLE--KP---LNCD----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT  304 (327)
T ss_dssp             HHGGG-TCCCC--CC---TTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred             HHhhc-CCCCC--CC---CCCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence            22211 10000  01   1111    2377899999999999999999999999998865543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=316.31  Aligned_cols=237  Identities=22%  Similarity=0.244  Sum_probs=175.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++....  ......+..|+..+.++ +||||++++++|.+.+      
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~------  130 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG------  130 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT------
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCC------
Confidence            56889999999999999999975 79999999886532  23344455566555555 9999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+ +|+|.+++....  ..++|..+..++.+++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       131 --~~~lv~e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG  202 (311)
T 3p1a_A          131 --ILYLQTELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFG  202 (311)
T ss_dssp             --EEEEEEECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCT
T ss_pred             --EEEEEEecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccce
Confidence              789999999 679998887653  3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ++.........       .+..++.. ...++.++|||||||++|||++|..|+....     .+..+....     ..+
T Consensus       203 ~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~DiwslG~il~el~~g~~~~~~~~-----~~~~~~~~~-----~~~  271 (311)
T 3p1a_A          203 LLVELGTAGAGEVQEGDPRYMAPELL-QGSYGTAADVFSLGLTILEVACNMELPHGGE-----GWQQLRQGY-----LPP  271 (311)
T ss_dssp             TCEECC------CCCCCGGGCCGGGG-GTCCSTHHHHHHHHHHHHHHHHTCCCCSSHH-----HHHHHTTTC-----CCH
T ss_pred             eeeecccCCCCcccCCCccccCHhHh-cCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHhccC-----CCc
Confidence            98654332111       11111111 1245678899999999999999976654211     111111110     111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......+    ..+.+++.+||+.||.+|||++|+++
T Consensus       272 ~~~~~~~----~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          272 EFTAGLS----SELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             HHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccccCCC----HHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            1111111    33778999999999999999999975

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.3e-36  Score=320.09  Aligned_cols=253  Identities=22%  Similarity=0.380  Sum_probs=189.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-----cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|++     .+|+.||||++........+.+.+|++++++++||||+++++++...+.    
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~----  116 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR----  116 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-------
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC----
Confidence            5688889999999999999984     3689999999987666667889999999999999999999999876531    


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ...++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus       117 --~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Df  189 (326)
T 2w1i_A          117 --RNLKLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDF  189 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCC
T ss_pred             --CceEEEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecC
Confidence              25799999999999999997653  3489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH-----------
Q 004232          638 GLSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE-----------  695 (766)
Q Consensus       638 Gla~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~-----------  695 (766)
                      |++.........   ......+..+        ...+.++|||||||++|||+||..|+..........           
T Consensus       190 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~  269 (326)
T 2w1i_A          190 GLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIV  269 (326)
T ss_dssp             TTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHH
T ss_pred             cchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhH
Confidence            999765332111   0001111111        123457899999999999999998875321111000           


Q ss_pred             --HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          696 --LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       696 --~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                        +..........     ......    ...+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       270 ~~~~~~~~~~~~~-----~~~~~~----~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          270 FHLIELLKNNGRL-----PRPDGC----PDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             HHHHHHHHTTCCC-----CCCTTC----CHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCC-----CCCCcc----cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence              00010000000     001111    2347789999999999999999999999998763

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2e-35  Score=309.24  Aligned_cols=245  Identities=18%  Similarity=0.230  Sum_probs=186.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.|++.+.||+|+||.||+|+.. ++..||+|++........+.+.+|++++++++||||+++++++.+.+        
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--------   79 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNT--------   79 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--------
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCC--------
Confidence            356888999999999999999864 57899999997665556788999999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~DF  637 (766)
                      ..++||||+++|+|.+++....   .+++..+..++.+++.||+|||+.   +|+||||||+||++   +.++.+||+||
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Df  153 (277)
T 3f3z_A           80 DIYLVMELCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDF  153 (277)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred             eEEEEEeccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEec
Confidence            6899999999999999887643   388999999999999999999997   89999999999999   78899999999


Q ss_pred             CCCcccccccccccCCCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          638 GLSIVSEDINSVGGKQEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       638 Gla~~~~~~~~~~~~~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      |++...............+.+      ...++.++|||||||++|||+||+.||.....  ......+....  ......
T Consensus       154 g~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~--~~~~~~  229 (277)
T 3f3z_A          154 GLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTD--SEVMLKIREGT--FTFPEK  229 (277)
T ss_dssp             TTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCCCHH
T ss_pred             ccceeccCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCC--CCCCch
Confidence            998654332211111111100      12356789999999999999999999874332  11122221111  111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .. ...    ...+.+++.+|++.||.+||++.|+++.
T Consensus       230 ~~-~~~----~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          230 DW-LNV----SPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             HH-TTS----CHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             hh-hcC----CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00 011    1346789999999999999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.1e-35  Score=331.49  Aligned_cols=241  Identities=23%  Similarity=0.346  Sum_probs=185.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||++.....   ...+.+.+|+.+++.++||||+++++++.+.+     
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~-----   89 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPS-----   89 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-----
Confidence            357888999999999999999965 799999999965432   23567899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus        90 ---~~~lv~E~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DF  160 (476)
T 2y94_A           90 ---DIFMVMEYVSGGELFDYICKNG---RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF  160 (476)
T ss_dssp             ---EEEEEEECCSSEEHHHHTTSSS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred             ---EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEec
Confidence               7899999999999999997543   489999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccccCCCCCCc-------cc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGGKQEDPNS-------WE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~~~~~~~~-------~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++...............+.+       .. ..+.++|||||||++|||++|+.||.....  ......+...  ...  
T Consensus       161 G~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--~~~~~~i~~~--~~~--  234 (476)
T 2y94_A          161 GLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--PTLFKKICDG--IFY--  234 (476)
T ss_dssp             SSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--HHHHHHHHTT--CCC--
T ss_pred             cchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--HHHHHHHhcC--CcC--
Confidence            999765432211111111111       11 124578999999999999999999974332  2222222111  001  


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .|.   ..+    ..+.+++.+||+.||.+|||+.||++.
T Consensus       235 ~p~---~~s----~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          235 TPQ---YLN----PSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             CCT---TCC----HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCc---cCC----HHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence            111   111    236789999999999999999999863

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.2e-35  Score=323.35  Aligned_cols=244  Identities=18%  Similarity=0.234  Sum_probs=177.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||+||+++.. +++.||||++..... ..+.+.+|+.++++++|||||++++++.+.+        
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~--------   89 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPT--------   89 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSS--------
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCC--------
Confidence            457889999999999999999965 789999999975432 2356889999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--EEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--AKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~--~kl~DFG  638 (766)
                      ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.  +||+|||
T Consensus        90 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg  163 (361)
T 3uc3_A           90 HLAIIMEYASGGELYERICNAG---RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFG  163 (361)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred             EEEEEEEeCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecC
Confidence            7899999999999999987643   388999999999999999999997   8999999999999987765  9999999


Q ss_pred             CCccccccccc---ccCCC--CCCc--ccCC-CCCCCEeehhHHHHHHhcCCCccccCcc--chHHHHhhhhcccCcccc
Q 004232          639 LSIVSEDINSV---GGKQE--DPNS--WEMT-KLEDDVFSFGFMLLESVAGPSVAARKGQ--FLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       639 la~~~~~~~~~---~~~~~--~~~~--~~~~-~~~~DV~SfGvil~ElltG~~p~~~~~~--~~~~~~~~~~~~~~~~~~  708 (766)
                      +++........   .++..  .|..  ...+ +.++|||||||++|||++|+.||.....  ........+...  ...+
T Consensus       164 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~--~~~~  241 (361)
T 3uc3_A          164 YSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSV--KYSI  241 (361)
T ss_dssp             CC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTT--CCCC
T ss_pred             ccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcC--CCCC
Confidence            98643221111   01110  0110  1112 2237999999999999999999864321  112222222111  1111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+..   ..+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       242 ~~~~---~~s----~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          242 PDDI---RIS----PECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             CTTS---CCC----HHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             CCcC---CCC----HHHHHHHHHHccCChhHCcCHHHHHhC
Confidence            1110   111    236789999999999999999999865

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1e-35  Score=313.90  Aligned_cols=247  Identities=20%  Similarity=0.316  Sum_probs=184.9

Q ss_pred             hcCCCcCC-ceecCCceeEEEEEe---cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          482 TNNFDMSA-IMGEGSYGKLYKGRL---ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       482 ~~~f~~~~-~lG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      .++|.+.+ .||+|+||.||+|..   .+++.||||.++...  ....+++.+|++++++++||||+++++++..     
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----   89 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-----   89 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-----
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC-----
Confidence            35577777 999999999999964   347889999997543  2336789999999999999999999999843     


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                          +..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        90 ----~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~  159 (291)
T 1xbb_A           90 ----ESWMLVMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKIS  159 (291)
T ss_dssp             ----SSEEEEEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEEC
T ss_pred             ----CCcEEEEEeCCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEc
Confidence                25799999999999999998643   388999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhccc
Q 004232          636 DYGLSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       636 DFGla~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      |||++.........   ......+..+        ..++.++|||||||++|||+| |+.|+.......  ....+ ...
T Consensus       160 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~-~~~  236 (291)
T 1xbb_A          160 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAML-EKG  236 (291)
T ss_dssp             CCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHH-HTT
T ss_pred             cCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH--HHHHH-HcC
Confidence            99998654322111   0000001111        123457899999999999999 999986433211  11111 111


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....     ....+    ..+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       237 ~~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  279 (291)
T 1xbb_A          237 ERMGC-----PAGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  279 (291)
T ss_dssp             CCCCC-----CTTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCCC-----CCCCC----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            11111     11112    237789999999999999999999999998764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.2e-35  Score=315.44  Aligned_cols=252  Identities=18%  Similarity=0.252  Sum_probs=170.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+.+       
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-------   76 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTEN-------   76 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTT-------
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECC-------
Confidence            457888999999999999999854 68999999986543 223467889999999999999999999988753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENT---PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                       ..++||||++ |+|.+++....   ....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        77 -~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~D  151 (317)
T 2pmi_A           77 -KLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGD  151 (317)
T ss_dssp             -EEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred             -eEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECc
Confidence             7899999999 59999886532   123488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc----ccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccC--
Q 004232          637 YGLSIVSEDINSV----GGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEG--  704 (766)
Q Consensus       637 FGla~~~~~~~~~----~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~--  704 (766)
                      ||+++........    .++.  ..|..   ...++.++|||||||++|||+||+.||....... ...+........  
T Consensus       152 fg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~  231 (317)
T 2pmi_A          152 FGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNES  231 (317)
T ss_dssp             CSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTT
T ss_pred             CccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChh
Confidence            9999754321111    0010  01111   1235678899999999999999999987543211 111111100000  


Q ss_pred             -------ccc---------------cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 -------RQR---------------LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 -------~~~---------------~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             ...               ...+......    ...+.+++.+|++.||.+|||++|+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          232 LWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPL----DGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             TCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCC----CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             HhhhhhhhhhcccccccccchhHHHhhcccccccC----CHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence                   000               0000000011    1247899999999999999999998753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.5e-35  Score=325.09  Aligned_cols=237  Identities=21%  Similarity=0.326  Sum_probs=176.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.++||+|+||+||+|+.. +++.||||+++...   ....+.+.+|..++.++ +|||||++++++.+.+    
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~----  126 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES----  126 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSS----
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECC----
Confidence            467999999999999999999965 68899999997542   22345678899999887 8999999999988753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          .+++||||+++|+|..++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+|
T Consensus       127 ----~~~lV~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~D  196 (396)
T 4dc2_A          127 ----RLFFVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD  196 (396)
T ss_dssp             ----EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred             ----EEEEEEEcCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEee
Confidence                7899999999999999997653   388999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccc-cc---ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc------hHHH-Hhhhhc
Q 004232          637 YGLSIVSEDIN-SV---GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF------LQEE-LDSLNS  701 (766)
Q Consensus       637 FGla~~~~~~~-~~---~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~------~~~~-~~~~~~  701 (766)
                      ||+++...... ..   .++.    ++......++.++|||||||++|||++|+.||......      .... ...+..
T Consensus       197 FGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~  276 (396)
T 4dc2_A          197 YGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE  276 (396)
T ss_dssp             CTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHH
T ss_pred             cceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhc
Confidence            99997522111 11   1111    11111234567889999999999999999999632110      1111 111111


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                       . ...+  |   ...+    ..+.+++.+|++.||.+||++
T Consensus       277 -~-~~~~--p---~~~s----~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          277 -K-QIRI--P---RSLS----VKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             -C-CCCC--C---TTSC----HHHHHHHHHHTCSCTTTSTTC
T ss_pred             -c-ccCC--C---CcCC----HHHHHHHHHHhcCCHhHcCCC
Confidence             0 1111  1   1112    236789999999999999995

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2e-36  Score=333.77  Aligned_cols=250  Identities=18%  Similarity=0.259  Sum_probs=186.7

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      .++....++|++.+.||+|+||+||+|+.. +++.||+|+++....   ...+.+.+|+.+++.++|||||+++++|.+.
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            445556788999999999999999999965 689999999865321   2234578899999999999999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      +        .+|+||||+++|+|.+++++.    .+++.....++.+|+.||+|||+.   +|+||||||+|||++.+++
T Consensus       142 ~--------~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~  206 (410)
T 3v8s_A          142 R--------YLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGH  206 (410)
T ss_dssp             S--------EEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred             C--------EEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCC
Confidence            3        789999999999999998754    378889999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCcccccccc-----cccCCC--CCCcc--cC----CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          632 AKLSDYGLSIVSEDINS-----VGGKQE--DPNSW--EM----TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~-----~~~~~~--~~~~~--~~----~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      +||+|||+++.......     ..++..  .|...  ..    ++.++|||||||++|||+||+.||.....  ......
T Consensus       207 ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~  284 (410)
T 3v8s_A          207 LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL--VGTYSK  284 (410)
T ss_dssp             EEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHH
T ss_pred             EEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh--hhHHHH
Confidence            99999999976433211     111110  11100  11    44678999999999999999999974332  222222


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWN  749 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~  749 (766)
                      +........+.+.   ...+    ..+.+|+.+|++.+|.+  ||+++||.+.
T Consensus       285 i~~~~~~~~~p~~---~~~s----~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          285 IMNHKNSLTFPDD---NDIS----KEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             HHTHHHHCCCCTT---CCCC----HHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             HHhccccccCCCc---cccc----HHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence            2211101111111   1112    23678899999999988  9999998764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=6.8e-36  Score=321.65  Aligned_cols=254  Identities=24%  Similarity=0.368  Sum_probs=189.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-C-----CceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-N-----GTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~-----g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      ..++|++.+.||+|+||.||+|+.. +     +..||||.+.... ....+.+.+|+.+++++ +||||++++++|.+.+
T Consensus        44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  123 (333)
T 2i1m_A           44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG  123 (333)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence            3577899999999999999999853 2     3479999997643 34467799999999999 8999999999998753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCC
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENT-----------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKT  621 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~-----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~  621 (766)
                              ..++||||+++|+|.+++....           ....+++..+..++.+++.||+|||+.   +|+||||||
T Consensus       124 --------~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp  192 (333)
T 2i1m_A          124 --------PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA  192 (333)
T ss_dssp             --------SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred             --------ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence                    6799999999999999987532           123478999999999999999999997   899999999


Q ss_pred             CceEEcCCCcEEEecCCCCccccccccc---ccC-----CCCCC--cccCCCCCCCEeehhHHHHHHhc-CCCccccCcc
Q 004232          622 NNILLNEHRIAKLSDYGLSIVSEDINSV---GGK-----QEDPN--SWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQ  690 (766)
Q Consensus       622 ~NILld~~~~~kl~DFGla~~~~~~~~~---~~~-----~~~~~--~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~  690 (766)
                      +||+++.++.+||+|||++.........   ...     ...|.  ....++.++|||||||++|||+| |..|+.....
T Consensus       193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  272 (333)
T 2i1m_A          193 RNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV  272 (333)
T ss_dssp             GGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS
T ss_pred             ceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch
Confidence            9999999999999999999654322111   000     00111  11345667899999999999999 8888864322


Q ss_pred             chHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          691 FLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ..  ..........  ....+.   ..+    ..+.+++.+||+.||.+|||+.||++.|+++.+.
T Consensus       273 ~~--~~~~~~~~~~--~~~~~~---~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  327 (333)
T 2i1m_A          273 NS--KFYKLVKDGY--QMAQPA---FAP----KNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE  327 (333)
T ss_dssp             SH--HHHHHHHHTC--CCCCCT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHhcCC--CCCCCC---CCC----HHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence            11  1111111110  111111   111    2367899999999999999999999999988753

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.3e-35  Score=315.49  Aligned_cols=240  Identities=22%  Similarity=0.374  Sum_probs=174.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||.||+++.    .+|+.||||+++...    ......+.+|+.++++++||||+++++++.+.+ 
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-   94 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGG-   94 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSS-
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCC-
Confidence            35788999999999999999986    478999999997642    233456888999999999999999999998753 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +|+||||||+|||++.++.+|
T Consensus        95 -------~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~k  161 (327)
T 3a62_A           95 -------KLYLILEYLSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVK  161 (327)
T ss_dssp             -------CEEEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEE
T ss_pred             -------EEEEEEeCCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEE
Confidence                   6899999999999999997643   378889999999999999999997   899999999999999999999


Q ss_pred             EecCCCCccccccccc----ccCCC--CC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          634 LSDYGLSIVSEDINSV----GGKQE--DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       634 l~DFGla~~~~~~~~~----~~~~~--~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |+|||+++........    .++..  .|  .....++.++|||||||++|||++|+.||.....  ......+....  
T Consensus       162 l~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~~--  237 (327)
T 3a62_A          162 LTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR--KKTIDKILKCK--  237 (327)
T ss_dssp             ECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTC--
T ss_pred             EEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCC--
Confidence            9999998653221110    01110  01  1123456688999999999999999999874332  12222221111  


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                      ..+  |   ...+    ..+.+++.+||+.||.+||     ++.|+++
T Consensus       238 ~~~--p---~~~~----~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          238 LNL--P---PYLT----QEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             CCC--C---TTSC----HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             CCC--C---CCCC----HHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence            111  1   1111    2367899999999999999     6667754

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1.6e-35  Score=311.56  Aligned_cols=245  Identities=16%  Similarity=0.278  Sum_probs=179.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.|.+.+.||+|+||.||+|+. .++..||+|++.... ....+.+.+|++++++++||||+++++++.+..        
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--------   93 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYH--------   93 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS--------
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCC--------
Confidence            4588889999999999999986 468999999986543 234678999999999999999999999998653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEec
Q 004232          561 KVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKLSD  636 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---~~~~~kl~D  636 (766)
                      ..++||||+++|+|.+++.... ....+++..+..++.+++.||+|||+.   +|+||||||+||+++   .++.+||+|
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~D  170 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIID  170 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECC
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEe
Confidence            7899999999999999885431 124589999999999999999999997   899999999999994   567899999


Q ss_pred             CCCCcccccccccccCCC-----CCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          637 YGLSIVSEDINSVGGKQE-----DPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       637 FGla~~~~~~~~~~~~~~-----~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ||++..............     .|.. ...++.++|||||||++|||++|+.||.........  ............ .
T Consensus       171 fg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~--~~~~~~~~~~~~-~  247 (285)
T 3is5_A          171 FGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQ--QKATYKEPNYAV-E  247 (285)
T ss_dssp             CCCCCC----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH--HHHHHCCCCCCC--
T ss_pred             eecceecCCcccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHH--hhhccCCccccc-c
Confidence            999965432211110000     0100 123456789999999999999999998743322111  111111100000 0


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ....+    ..+.+++.+||+.||.+|||+.||++
T Consensus       248 ---~~~~~----~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          248 ---CRPLT----PQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ----CCCC----HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ---cCcCC----HHHHHHHHHHccCChhhCcCHHHHhc
Confidence               00111    23678999999999999999999975

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.1e-35  Score=320.96  Aligned_cols=241  Identities=21%  Similarity=0.313  Sum_probs=182.3

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~  554 (766)
                      ...++|++.+.||+|+||.||+|+.. +|+.||||+++...   ....+.+..|..++.++ +||||+++++++.+.+  
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~--   91 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE--   91 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS--
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC--
Confidence            34678999999999999999999964 68999999997542   23356678899999877 9999999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++++||
T Consensus        92 ------~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL  159 (345)
T 1xjd_A           92 ------NLFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKI  159 (345)
T ss_dssp             ------EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred             ------EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEE
Confidence                  7899999999999999997643   388999999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCccccccc----ccccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          635 SDYGLSIVSEDIN----SVGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       635 ~DFGla~~~~~~~----~~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      +|||+++......    ...++.    ++......++.++|||||||++|||++|+.||.....  ...+..+....  .
T Consensus       160 ~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~--~  235 (345)
T 1xjd_A          160 ADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--EELFHSIRMDN--P  235 (345)
T ss_dssp             CCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--C
T ss_pred             eEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHhCC--C
Confidence            9999997532111    111111    1101113356788999999999999999999874332  22222222111  1


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHH-HHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFE-DIL  747 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~-ev~  747 (766)
                      .+  |   ...+    ..+.+++.+|++.||.+||++. ||.
T Consensus       236 ~~--p---~~~s----~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          236 FY--P---RWLE----KEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             CC--C---TTSC----HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             CC--C---cccC----HHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            11  1   1111    2367899999999999999997 654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=319.77  Aligned_cols=260  Identities=18%  Similarity=0.312  Sum_probs=180.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHH--HHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLR--LDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e--~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+. +++.||||++.....   +.+..|  +..+..++||||+++++++......   ..
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~---~~   84 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTAD---GR   84 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTT---SC
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccC---CC
Confidence            46788899999999999999976 689999999865432   333334  4445568999999999866532211   11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC------CCCcccCCCCCCceEEcCCCcEE
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV------IPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~ivHrdlk~~NILld~~~~~k  633 (766)
                      ...++||||+++|+|.+++....    .+|..+..++.|++.||+|||+..      .++|+||||||+|||++.++.+|
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k  160 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV  160 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEE
T ss_pred             ceEEEEEecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEE
Confidence            35799999999999999997543    589999999999999999999862      23899999999999999999999


Q ss_pred             EecCCCCccccccccc-------------ccCC-CCCCcc---------cCCCCCCCEeehhHHHHHHhcCCCccccCcc
Q 004232          634 LSDYGLSIVSEDINSV-------------GGKQ-EDPNSW---------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQ  690 (766)
Q Consensus       634 l~DFGla~~~~~~~~~-------------~~~~-~~~~~~---------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~  690 (766)
                      |+|||+++........             ++.. ..|...         ..++.++|||||||++|||+||..|+.....
T Consensus       161 L~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~  240 (336)
T 3g2f_A          161 ISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGES  240 (336)
T ss_dssp             ECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred             EeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence            9999999654321100             0000 001000         1122367999999999999999776542211


Q ss_pred             c------h---------HHHHhhhhccc-CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          691 F------L---------QEELDSLNSQE-GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       691 ~------~---------~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      .      .         ........... ....+.+.  . .........+.+++.+||+.||.+|||++||++.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll  317 (336)
T 3g2f_A          241 VPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEA--W-KENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM  317 (336)
T ss_dssp             CCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTT--C-CCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcc--c-ccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence            0      0         00111111111 11111110  0 111234456889999999999999999999999999987


Q ss_pred             h
Q 004232          755 Q  755 (766)
Q Consensus       755 ~  755 (766)
                      .
T Consensus       318 ~  318 (336)
T 3g2f_A          318 M  318 (336)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.8e-35  Score=307.50  Aligned_cols=244  Identities=20%  Similarity=0.302  Sum_probs=180.8

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +|....+||+|+||.||+|+. .+++.||||.+........+.+.+|+.++++++||||+++++++.+.+        ..
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~   94 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENG--------FI   94 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETT--------EE
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCC--------cE
Confidence            345556899999999999995 568899999998766556678999999999999999999999998753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~~kl~DFGla~  641 (766)
                      ++||||+++|+|.+++........+++..+..++.+++.||+|||+.   +|+||||||+||+++. ++.+||+|||++.
T Consensus        95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A           95 KIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             EEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             EEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccc
Confidence            99999999999999998654444567888899999999999999997   8999999999999997 8999999999986


Q ss_pred             ccccccccc----cCC--CCCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVG----GKQ--EDPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~----~~~--~~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      .........    ++.  ..|...    ..++.++|||||||++|||+||+.||............ ......     .+
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-~~~~~~-----~~  245 (295)
T 2clq_A          172 RLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFK-VGMFKV-----HP  245 (295)
T ss_dssp             ESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHH-HHHHCC-----CC
T ss_pred             ccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHh-hccccc-----cc
Confidence            543221110    000  011100    12456789999999999999999998643222111111 100010     11


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......+    ..+.+++.+||+.||.+||++.|+++
T Consensus       246 ~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          246 EIPESMS----AEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             CCCTTSC----HHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             cccccCC----HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            1111112    23678899999999999999999975

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=7.3e-36  Score=323.18  Aligned_cols=257  Identities=14%  Similarity=0.116  Sum_probs=179.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec----CCceEEEEEccCChhh-----------hHHHHHHHHHHHHhCCCCCcccccce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSKKY-----------TVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      ++|.+.+.||+|+||.||+|+..    ++..||||+.......           ..+.+.+|+..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            56888999999999999999964    5788999998754321           12346678889999999999999999


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      +.+...    .....++||||+ +|+|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+||+++
T Consensus       117 ~~~~~~----~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~  185 (345)
T 2v62_A          117 GLTEFK----GRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLG  185 (345)
T ss_dssp             EEEESS----SCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEE
T ss_pred             cccccC----CCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEc
Confidence            887321    013689999999 999999997653   589999999999999999999997   899999999999999


Q ss_pred             CCC--cEEEecCCCCccccccccc--------ccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCcc
Q 004232          628 EHR--IAKLSDYGLSIVSEDINSV--------GGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ  690 (766)
Q Consensus       628 ~~~--~~kl~DFGla~~~~~~~~~--------~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~  690 (766)
                      .++  .+||+|||+++........        ......+.       ....++.++|||||||++|||+||+.||.....
T Consensus       186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~  265 (345)
T 2v62_A          186 YKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLK  265 (345)
T ss_dssp             SSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTT
T ss_pred             cCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence            877  9999999999654322110        00000110       112345688999999999999999999964221


Q ss_pred             chHHH--HhhhhcccCcccccccccc-CCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          691 FLQEE--LDSLNSQEGRQRLVDPVVM-ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       691 ~~~~~--~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....  ...... ............ ...    ...+.+++.+||+.||.+||++.||++.|+.+..
T Consensus       266 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          266 DPVAVQTAKTNLL-DELPQSVLKWAPSGSS----CCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             CHHHHHHHHHHHH-HTTTHHHHHHSCTTSC----CHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             ccHHHHHHHHhhc-ccccHHHHhhcccccc----HHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            11111  110000 011111100000 011    1247789999999999999999999999987654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=7.2e-36  Score=318.36  Aligned_cols=254  Identities=16%  Similarity=0.231  Sum_probs=183.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+. .+++.||||+++...   ....+.+.+|+.++++++||||+++++++......   
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~---   87 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA---   87 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETT---
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCC---
Confidence            35788999999999999999995 578999999997542   33456789999999999999999999998764311   


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                       ....++||||+++|+|.++++...   .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        88 -~~~~~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df  160 (311)
T 3ork_A           88 -GPLPYIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDF  160 (311)
T ss_dssp             -EEEEEEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCC
T ss_pred             -CcccEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeec
Confidence             124599999999999999997653   488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc--------cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          638 GLSIVSEDINSV--------GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       638 Gla~~~~~~~~~--------~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |++.........        +.   ..++......++.++|||||||++|||+||+.||.......  ............
T Consensus       161 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~--~~~~~~~~~~~~  238 (311)
T 3ork_A          161 GIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS--VAYQHVREDPIP  238 (311)
T ss_dssp             SCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHCCCCC
T ss_pred             cCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCCCC
Confidence            999654322110        00   00000111234567899999999999999999987433221  111111111100


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH-HHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW-NLQYAA  754 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~-~L~~~~  754 (766)
                         ........+    ..+.+++.+||+.||.+||+..++++ .+....
T Consensus       239 ---~~~~~~~~~----~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          239 ---PSARHEGLS----ADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             ---HHHHSTTCC----HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ---cccccCCCC----HHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence               000011111    23678899999999999997777664 455544

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=3.5e-35  Score=310.04  Aligned_cols=251  Identities=18%  Similarity=0.234  Sum_probs=179.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++....  ....+.+.+|+.++++++||||+++++++.+.+       
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-------   74 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK-------   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT-------
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCC-------
Confidence            46888999999999999999864 68999999986532  334577889999999999999999999998763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++ ++.+.+....  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        75 -~~~lv~e~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~  147 (292)
T 3o0g_A           75 -KLTLVFEFCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGL  147 (292)
T ss_dssp             -EEEEEEECCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             -EEEEEEecCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccc
Confidence             78999999986 5555554432  3489999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccccc----CC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---ccCc--
Q 004232          640 SIVSEDINSVGG----KQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---QEGR--  705 (766)
Q Consensus       640 a~~~~~~~~~~~----~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---~~~~--  705 (766)
                      ++..........    +.  ..|.   ....++.++|||||||++|||+||..|+...... ......+..   ....  
T Consensus       148 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~-~~~~~~i~~~~~~~~~~~  226 (292)
T 3o0g_A          148 ARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV-DDQLKRIFRLLGTPTEEQ  226 (292)
T ss_dssp             CEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH-HHHHHHHHHHHCCCCTTT
T ss_pred             ceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCH-HHHHHHHHHHhCCCChhh
Confidence            975432211110    00  0111   1122567889999999999999998885432221 111111110   0000  


Q ss_pred             ----cccccc----c-----ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 ----QRLVDP----V-----VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ----~~~~d~----~-----~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                          ....+.    .     ............+.+++.+|++.||.+|||++|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          227 WPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                000000    0     000000011234678999999999999999999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=3.1e-35  Score=317.82  Aligned_cols=236  Identities=20%  Similarity=0.329  Sum_probs=177.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC---hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||.||+|+.. +++.||||+++..   .....+.+.+|+.+++++ +|||||++++++.+.+     
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~-----   83 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTES-----   83 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-----
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCC-----
Confidence            56888999999999999999965 6899999999754   234456788999999988 8999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++..+..++.+|+.||+|||+.   +|+||||||+|||++.++++||+||
T Consensus        84 ---~~~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF  154 (345)
T 3a8x_A           84 ---RLFFVIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDY  154 (345)
T ss_dssp             ---EEEEEECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCG
T ss_pred             ---EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEec
Confidence               7899999999999999997643   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccc-c---ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc------hHHH-Hhhhhcc
Q 004232          638 GLSIVSEDINS-V---GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF------LQEE-LDSLNSQ  702 (766)
Q Consensus       638 Gla~~~~~~~~-~---~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~------~~~~-~~~~~~~  702 (766)
                      |+++....... .   .++.    ++......++.++|||||||++|||++|+.||...+..      .... ...+...
T Consensus       155 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~  234 (345)
T 3a8x_A          155 GMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK  234 (345)
T ss_dssp             GGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC
T ss_pred             cccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC
Confidence            99975321111 0   0111    11011134566889999999999999999998632110      0111 1111110


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                        ...+  |   ...+    ..+.+++.+||+.||.+||++
T Consensus       235 --~~~~--p---~~~s----~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          235 --QIRI--P---RSLS----VKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             --CCCC--C---TTSC----HHHHHHHHHHTCSSTTTSTTC
T ss_pred             --CCCC--C---CCCC----HHHHHHHHHHhcCCHhHCCCC
Confidence              1111  1   1111    236789999999999999996

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.4e-35  Score=323.37  Aligned_cols=194  Identities=20%  Similarity=0.275  Sum_probs=158.3

Q ss_pred             hcCCCcCCceecC--CceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEG--SYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G--~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|  +||.||+|+.. +|+.||||+++...  ....+.+.+|+.++++++|||||++++++.+.+    
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----   99 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADN----   99 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT----
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECC----
Confidence            3568899999999  99999999965 79999999996543  344677889999999999999999999998764    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus       100 ----~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~d  171 (389)
T 3gni_B          100 ----ELWVVTSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSG  171 (389)
T ss_dssp             ----EEEEEEECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECC
T ss_pred             ----EEEEEEEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcc
Confidence                78999999999999999976532 3488999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc------------cccC-CCCCCc--c--cCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          637 YGLSIVSEDINS------------VGGK-QEDPNS--W--EMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       637 FGla~~~~~~~~------------~~~~-~~~~~~--~--~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      ||.+........            .++. ...|..  .  ..++.++|||||||++|||++|+.||..
T Consensus       172 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  239 (389)
T 3gni_B          172 LRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD  239 (389)
T ss_dssp             GGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            999754321110            0000 001111  1  2356688999999999999999999864

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.5e-35  Score=318.27  Aligned_cols=253  Identities=23%  Similarity=0.386  Sum_probs=186.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.+.||+|+||.||+|+.      .++..||||.+... .....+++.+|+.++++++||||+++++++.+.+  
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--  106 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  106 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC--
Confidence            46788999999999999999984      35778999999654 3445678899999999999999999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE--  628 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~--  628 (766)
                            ..++||||+++|+|.+++.+...    ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.  
T Consensus       107 ------~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~  177 (327)
T 2yfx_A          107 ------PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPG  177 (327)
T ss_dssp             ------SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSS
T ss_pred             ------CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCC
Confidence                  57999999999999999976532    13488999999999999999999997   8999999999999994  


Q ss_pred             -CCcEEEecCCCCccccccccc---c-------cCCCCCCcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHH
Q 004232          629 -HRIAKLSDYGLSIVSEDINSV---G-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEEL  696 (766)
Q Consensus       629 -~~~~kl~DFGla~~~~~~~~~---~-------~~~~~~~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~  696 (766)
                       +..+||+|||++.........   .       +..++......++.++|||||||++|||+| |+.|+......  ...
T Consensus       178 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~  255 (327)
T 2yfx_A          178 PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVL  255 (327)
T ss_dssp             TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH
T ss_pred             CcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHH
Confidence             456999999998643221100   0       001110112345668899999999999999 88888643221  111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ..+.. .....     .....+    ..+.+++.+||+.||.+||++.||++.|+.+.+..
T Consensus       256 ~~~~~-~~~~~-----~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          256 EFVTS-GGRMD-----PPKNCP----GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             HHHHT-TCCCC-----CCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             HHHhc-CCCCC-----CCCCCC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence            11111 11111     011111    23678999999999999999999999999887533

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=3.6e-35  Score=307.68  Aligned_cols=241  Identities=19%  Similarity=0.353  Sum_probs=183.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+.. ++..||||++....   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   82 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT-----   82 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCC-----
Confidence            567889999999999999999864 57899999986532   223567889999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        83 ---~~~lv~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Df  153 (279)
T 3fdn_A           83 ---RVYLILEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADF  153 (279)
T ss_dssp             ---EEEEEECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSC
T ss_pred             ---EEEEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEec
Confidence               6899999999999999987653   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc--cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          638 GLSIVSEDINSVG--GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       638 Gla~~~~~~~~~~--~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      |++..........  ++    .++.......+.++|||||||++|||++|+.|+.....  ......+....  ..+  |
T Consensus       154 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~--~~~--~  227 (279)
T 3fdn_A          154 GWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--QETYKRISRVE--FTF--P  227 (279)
T ss_dssp             CEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCC--C
T ss_pred             cccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH--HHHHHHHHhCC--CCC--C
Confidence            9985433221110  11    11111123456689999999999999999999874332  22222221111  011  1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ...+    ..+.+++.+||+.||.+||+++||++.
T Consensus       228 ---~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          228 ---DFVT----EGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             ---TTSC----HHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             ---CcCC----HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence               1111    236789999999999999999999976

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=3.1e-35  Score=308.71  Aligned_cols=251  Identities=20%  Similarity=0.296  Sum_probs=186.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC-----
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD-----  555 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~-----  555 (766)
                      ..+|++.+.||+|+||.||+|+.. +++.||||.++...    +.+.+|++++++++||||+++++++....-..     
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            356888999999999999999975 79999999997643    34678999999999999999999886411000     


Q ss_pred             ---CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          556 ---DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       556 ---~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                         .......++||||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEE
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCE
Confidence               001135899999999999999997542 23588999999999999999999997   89999999999999999999


Q ss_pred             EEecCCCCcccccccccccCCCC-----C--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          633 KLSDYGLSIVSEDINSVGGKQED-----P--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~~~~~~~-----~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+|||++...............     |  .....++.++|||||||++|||+||..|+....    .....+.. ...
T Consensus       162 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----~~~~~~~~-~~~  236 (284)
T 2a19_B          162 KIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS----KFFTDLRD-GII  236 (284)
T ss_dssp             EECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH----HHHHHHHT-TCC
T ss_pred             EECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH----HHHHHhhc-ccc
Confidence            99999998665332111110011     1  111345678999999999999999988864211    11111111 111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      .        ...+    ..+.+++.+||+.||.+||++.|+++.|+.+....
T Consensus       237 ~--------~~~~----~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          237 S--------DIFD----KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             C--------TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             c--------ccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence            1        1111    23668899999999999999999999999876433

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=8.3e-35  Score=314.19  Aligned_cols=258  Identities=17%  Similarity=0.317  Sum_probs=188.7

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHh--CCCCCcccccceeecCCCCCCc
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAK--LRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~--l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ...++|.+.+.||+|+||.||+|+. +|+.||||++...   ..+.+.+|++++..  ++||||+++++++.+..+.   
T Consensus        39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~---  111 (342)
T 1b6c_B           39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGT---  111 (342)
T ss_dssp             HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSS---
T ss_pred             cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCc---
Confidence            3456799999999999999999987 5899999998643   34567788888887  7999999999999876421   


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHh--------cCCCCCcccCCCCCCceEEcCC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH--------TGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrdlk~~NILld~~  629 (766)
                       ....++||||+++|+|.+++.+.    .+++..+..++.+++.||+|||        +.   +|+||||||+||+++.+
T Consensus       112 -~~~~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~  183 (342)
T 1b6c_B          112 -WTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKN  183 (342)
T ss_dssp             -CCCEEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTT
T ss_pred             -cceeEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCC
Confidence             12689999999999999999754    3889999999999999999999        54   89999999999999999


Q ss_pred             CcEEEecCCCCccccccccc-----c---cCC--CCCCccc--------CCCCCCCEeehhHHHHHHhcC----------
Q 004232          630 RIAKLSDYGLSIVSEDINSV-----G---GKQ--EDPNSWE--------MTKLEDDVFSFGFMLLESVAG----------  681 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~-----~---~~~--~~~~~~~--------~~~~~~DV~SfGvil~ElltG----------  681 (766)
                      +.+||+|||++.........     .   ++.  ..|....        ..+.++|||||||++|||+||          
T Consensus       184 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~  263 (342)
T 1b6c_B          184 GTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY  263 (342)
T ss_dssp             SCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred             CCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccc
Confidence            99999999999654332110     0   000  0111000        011468999999999999999          


Q ss_pred             CCccccCcc--chHHHHhhhhcccCccccccccccCC-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          682 PSVAARKGQ--FLQEELDSLNSQEGRQRLVDPVVMAT-SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       682 ~~p~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      ..|+.....  .....+........    ..+..... ...+....+.+++.+||+.||.+|||+.||++.|+.+.+-
T Consensus       264 ~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          264 QLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             CCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ccCccccCcCcccHHHHHHHHHHHH----hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            566643211  11111111111111    11111110 1224556688999999999999999999999999998753

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=3.9e-36  Score=333.95  Aligned_cols=254  Identities=18%  Similarity=0.265  Sum_probs=188.8

Q ss_pred             HHHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeec
Q 004232          475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCID  550 (766)
Q Consensus       475 ~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~  550 (766)
                      +.++...+++|++.++||+|+||+||+|+.. +++.||||+++....   ...+.+.+|+.++++++|||||+++++|.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            4555566789999999999999999999975 588999999865322   123348889999999999999999999987


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      .+        .+++|||||++|+|.+++.+..  ..+++.....++.+++.||+|||+.   +|+||||||+|||++.++
T Consensus       146 ~~--------~~~lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g  212 (437)
T 4aw2_A          146 DN--------NLYLVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNG  212 (437)
T ss_dssp             SS--------EEEEEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTS
T ss_pred             CC--------EEEEEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCC
Confidence            63        7899999999999999997632  3489999999999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCccccccccc-----ccCC--CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH
Q 004232          631 IAKLSDYGLSIVSEDINSV-----GGKQ--EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL  696 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~-----~~~~--~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~  696 (766)
                      ++||+|||+++........     .++.  ..|..       ...++.++|||||||++|||+||+.||.....  .+..
T Consensus       213 ~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~--~~~~  290 (437)
T 4aw2_A          213 HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL--VETY  290 (437)
T ss_dssp             CEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHH
T ss_pred             CEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh--hHHH
Confidence            9999999999654322111     1111  01111       12356689999999999999999999974332  2222


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCC--CCCHHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWS--RPSFEDILWN  749 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~--RPs~~ev~~~  749 (766)
                      ..+.....  .+.-|......+    ..+.+++.+|++.+|.+  ||+++||++.
T Consensus       291 ~~i~~~~~--~~~~p~~~~~~s----~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          291 GKIMNHKE--RFQFPTQVTDVS----ENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             HHHHTHHH--HCCCCSSCCCSC----HHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             Hhhhhccc--cccCCcccccCC----HHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            22211110  111111111122    23678889999888888  9999998753

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.6e-35  Score=318.89  Aligned_cols=240  Identities=17%  Similarity=0.249  Sum_probs=184.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-----  114 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS-----  114 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC-----
Confidence            367889999999999999999964 69999999986543   233567889999999999999999999988753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       115 ---~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF  185 (350)
T 1rdq_E          115 ---NLYMVMEYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDF  185 (350)
T ss_dssp             ---EEEEEEECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred             ---EEEEEEcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEccc
Confidence               7899999999999999998653   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc-ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          638 GLSIVSEDINSV-GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       638 Gla~~~~~~~~~-~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+++........ .++.    ++......++.++|||||||++|||++|+.||.....  ......+....  ..+  | 
T Consensus       186 g~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~--~~~--p-  258 (350)
T 1rdq_E          186 GFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--IQIYEKIVSGK--VRF--P-  258 (350)
T ss_dssp             TTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCC--C-
T ss_pred             ccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH--HHHHHHHHcCC--CCC--C-
Confidence            999765432211 1111    1111123456789999999999999999999874332  22222222111  111  1 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPS-----FEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~  748 (766)
                        ...+    ..+.+++.+||+.||.+||+     ++||.+
T Consensus       259 --~~~~----~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          259 --SHFS----SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             --TTCC----HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             --CCCC----HHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence              1112    23678999999999999998     777764

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=320.24  Aligned_cols=241  Identities=18%  Similarity=0.276  Sum_probs=180.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCC--CCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRH--PHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~H--pniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|++.+.||+|+||.||+|...+++.||||++...  .....+.+.+|+.++++++|  |||+++++++.+..      
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~------   82 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ------   82 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS------
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCC------
Confidence            458889999999999999999888999999998643  34456789999999999987  99999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||| +.+|+|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+|||++ ++.+||+|||
T Consensus        83 --~~~lv~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG  152 (343)
T 3dbq_A           83 --YIYMVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFG  152 (343)
T ss_dssp             --EEEEEEC-CCSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCS
T ss_pred             --EEEEEEe-CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecc
Confidence              7899999 57889999998653   488999999999999999999997   899999999999997 5789999999


Q ss_pred             CCcccccccc-------cccCCC-CCCc-------------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          639 LSIVSEDINS-------VGGKQE-DPNS-------------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       639 la~~~~~~~~-------~~~~~~-~~~~-------------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      +++.......       .++... .|..             ...++.++|||||||++|||++|+.||....... ....
T Consensus       153 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~  231 (343)
T 3dbq_A          153 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-SKLH  231 (343)
T ss_dssp             SSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-HHHH
T ss_pred             cccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH-HHHH
Confidence            9975432211       011110 1111             1334567899999999999999999986432211 1111


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+........+  +   ...+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       232 ~~~~~~~~~~~--~---~~~~----~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          232 AIIDPNHEIEF--P---DIPE----KDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             HHHCTTSCCCC--C---CCSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhcCCcccCC--c---ccCC----HHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            11111111111  1   1111    236789999999999999999999865

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.5e-35  Score=320.52  Aligned_cols=252  Identities=20%  Similarity=0.262  Sum_probs=183.4

Q ss_pred             HHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-----hhhHHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          478 LKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       478 l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      +....++|++.+.||+|+||.||+|+. .++..||||++....     ....+.+.+|++++++++||||++++++|.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            445567799999999999999999986 468899999986432     34467899999999999999999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------------------------------CCCCCHHHHHH
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------------------------------GKVLNWSERLA  594 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------------------------------~~~l~~~~~~~  594 (766)
                      +        ..++||||+++|+|.+++.....                                     ...+++.....
T Consensus       101 ~--------~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (345)
T 3hko_A          101 Q--------YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISN  172 (345)
T ss_dssp             S--------EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHH
T ss_pred             C--------eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence            3        78999999999999998852100                                     11134566778


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC--cEEEecCCCCccccccccc--------ccCC--CCCCc----
Q 004232          595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR--IAKLSDYGLSIVSEDINSV--------GGKQ--EDPNS----  658 (766)
Q Consensus       595 i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~--~~kl~DFGla~~~~~~~~~--------~~~~--~~~~~----  658 (766)
                      ++.|++.||+|||+.   +|+||||||+||+++.++  .+||+|||+++........        .++.  ..|..    
T Consensus       173 i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  249 (345)
T 3hko_A          173 IMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTT  249 (345)
T ss_dssp             HHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCS
T ss_pred             HHHHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccC
Confidence            999999999999997   899999999999998766  8999999999754321110        0000  11111    


Q ss_pred             ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCC
Q 004232          659 WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESW  738 (766)
Q Consensus       659 ~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~  738 (766)
                      ...++.++|||||||++|||++|+.||......  .....+....  .....+.. ...+    ..+.+++.+||+.||.
T Consensus       250 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~----~~~~~li~~~l~~~p~  320 (345)
T 3hko_A          250 NESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA--DTISQVLNKK--LCFENPNY-NVLS----PLARDLLSNLLNRNVD  320 (345)
T ss_dssp             SSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC--CCTTSGGG-GGSC----HHHHHHHHHHSCSCTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH--HHHHHHHhcc--cccCCccc-ccCC----HHHHHHHHHHcCCChh
Confidence            134566899999999999999999998643321  1122221111  11111111 1111    2367899999999999


Q ss_pred             CCCCHHHHHHH
Q 004232          739 SRPSFEDILWN  749 (766)
Q Consensus       739 ~RPs~~ev~~~  749 (766)
                      +||++.|+++.
T Consensus       321 ~Rps~~~~l~h  331 (345)
T 3hko_A          321 ERFDAMRALQH  331 (345)
T ss_dssp             TSCCHHHHHHS
T ss_pred             HCCCHHHHhcC
Confidence            99999999764

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=307.77  Aligned_cols=241  Identities=19%  Similarity=0.305  Sum_probs=179.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||.+.....   ...+.+.+|+.++++++||||+++++++.+.+     
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   84 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN-----   84 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSS-----
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCC-----
Confidence            45788999999999999999986 5799999999864322   22477899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        85 ---~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~df  156 (278)
T 3cok_A           85 ---YVYLVLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADF  156 (278)
T ss_dssp             ---EEEEEEECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCC
T ss_pred             ---eEEEEEecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEee
Confidence               7899999999999999997542  3589999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++.........        ....++.......+.++|||||||++|||+||+.|+.......  ....+..    ... 
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~----~~~-  229 (278)
T 3cok_A          157 GLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN--TLNKVVL----ADY-  229 (278)
T ss_dssp             TTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------CCS----SCC-
T ss_pred             cceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH--HHHHHhh----ccc-
Confidence            998654321110        0111111122345668999999999999999999986432211  1111110    011 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ......+    ..+.+++.+||+.||.+||+++||++
T Consensus       230 --~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          230 --EMPSFLS----IEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             --CCCTTSC----HHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             --CCccccC----HHHHHHHHHHcccCHhhCCCHHHHhc
Confidence              1111112    23678999999999999999999976

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=7.4e-35  Score=311.95  Aligned_cols=244  Identities=20%  Similarity=0.319  Sum_probs=185.1

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      +.|++.+.||+|+||.||+|+.. +|+.||||.++....      ...+.+.+|+.++++++||||+++++++.+.+   
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---   88 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRT---   88 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS---
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCC---
Confidence            56888999999999999999864 689999999865422      13678999999999999999999999998753   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----c
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR----I  631 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~----~  631 (766)
                           ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++    .
T Consensus        89 -----~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~  157 (321)
T 2a2a_A           89 -----DVVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPH  157 (321)
T ss_dssp             -----EEEEEECCCCSCBHHHHHHTCS---CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCC
T ss_pred             -----EEEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCC
Confidence                 7899999999999999997543   488999999999999999999997   899999999999999887    7


Q ss_pred             EEEecCCCCcccccccccccC-------CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          632 AKLSDYGLSIVSEDINSVGGK-------QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~~-------~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +||+|||++............       .++......++.++|||||||++|||+||+.||.....  ......+.... 
T Consensus       158 ~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~-  234 (321)
T 2a2a_A          158 IKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANITSVS-  234 (321)
T ss_dssp             EEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHTTC-
T ss_pred             EEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhcc-
Confidence            999999999765432211110       11111123456789999999999999999999864322  22222221110 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       .. .++......+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       235 -~~-~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          235 -YD-FDEEFFSHTS----ELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             -CC-CCHHHHTTCC----HHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             -cc-cChhhhcccC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence             01 1111111112    236789999999999999999999863

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=3.5e-35  Score=313.54  Aligned_cols=246  Identities=18%  Similarity=0.259  Sum_probs=179.9

Q ss_pred             cCCCcC-CceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMS-AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +.|++. +.||+|+||.||+|+. .+++.||||++........+.+.+|++++.++ +||||+++++++.+.+       
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~-------   84 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEED-------   84 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-------
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC-------
Confidence            457764 7899999999999984 47899999999766555567889999999985 7999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI---AKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~---~kl~D  636 (766)
                       ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|
T Consensus        85 -~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~D  157 (316)
T 2ac3_A           85 -RFYLVFEKMRGGSILSHIHKRR---HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICD  157 (316)
T ss_dssp             -EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred             -EEEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEE
Confidence             7899999999999999997653   488999999999999999999997   8999999999999998765   99999


Q ss_pred             CCCCccccccccc------------ccCC-CCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccch----
Q 004232          637 YGLSIVSEDINSV------------GGKQ-EDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL----  692 (766)
Q Consensus       637 FGla~~~~~~~~~------------~~~~-~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~----  692 (766)
                      ||++.........            +... ..|...       ..++.++|||||||++|||+||+.||.......    
T Consensus       158 fg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~  237 (316)
T 2ac3_A          158 FDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWD  237 (316)
T ss_dssp             TTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-
T ss_pred             ccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccc
Confidence            9998654211100            0000 011100       224568999999999999999999986432110    


Q ss_pred             ---------HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          693 ---------QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       693 ---------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                               ......+.. . ...+.++.. ...    ...+.+++.+|++.||.+|||+.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~i~~-~-~~~~~~~~~-~~~----~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          238 RGEACPACQNMLFESIQE-G-KYEFPDKDW-AHI----SCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             ---CCHHHHHHHHHHHHH-C-CCCCCHHHH-TTS----CHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccccchhHHHHHHHHHhc-c-CcccCchhc-ccC----CHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence                     001111111 0 111111100 011    1247789999999999999999999864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.6e-34  Score=324.60  Aligned_cols=255  Identities=18%  Similarity=0.205  Sum_probs=181.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++...  .....+++.+|+.+|+.++|||||++++++.......  .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~--~  138 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLE--E  138 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTT--T
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccc--c
Confidence            46789999999999999999985 46899999999754  3345678889999999999999999999997653211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ...+|+||||++++ +.+.+..     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       139 ~~~~~lv~E~~~~~-l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG  209 (464)
T 3ttj_A          139 FQDVYLVMELMDAN-LCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  209 (464)
T ss_dssp             CCEEEEEEECCSEE-HHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             CCeEEEEEeCCCCC-HHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEE
Confidence            24689999999875 5555542     278999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc---cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---c-----
Q 004232          639 LSIVSEDINSVG---GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---E-----  703 (766)
Q Consensus       639 la~~~~~~~~~~---~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---~-----  703 (766)
                      +++.........   ++    .++......++.++||||+||++|||++|+.||.....  .+.+..+...   .     
T Consensus       210 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~--~~~~~~i~~~lg~p~~~~~  287 (464)
T 3ttj_A          210 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY--IDQWNKVIEQLGTPCPEFM  287 (464)
T ss_dssp             CC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHHHCSCCHHHH
T ss_pred             eeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCCHHHH
Confidence            997654321111   11    11111123466789999999999999999999974332  1111111100   0     


Q ss_pred             ---------------Ccc-----ccccccccCCCC---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 ---------------GRQ-----RLVDPVVMATSS---LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 ---------------~~~-----~~~d~~~~~~~~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                     ...     ..+.........   ......+.+|+.+|++.||.+|||++|+++.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          288 KKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             TTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                           000     000000000011   1113458899999999999999999999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.8e-35  Score=312.41  Aligned_cols=256  Identities=16%  Similarity=0.222  Sum_probs=184.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..++|++.+.||+|+||.||+|+. .+++.||||.+.....  .+.+.+|+.++++++|++++..+++|...+       
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-------   77 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-------   77 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEET-------
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCC-------
Confidence            347799999999999999999985 5789999998754332  235788999999999999999888876543       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~D  636 (766)
                      ...++||||+ +|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~D  151 (296)
T 4hgt_A           78 DYNVMVMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIID  151 (296)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECC
T ss_pred             CceEEEEEcc-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEec
Confidence            3689999999 999999987543  3489999999999999999999997   89999999999999   7889999999


Q ss_pred             CCCCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhh
Q 004232          637 YGLSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLN  700 (766)
Q Consensus       637 FGla~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~  700 (766)
                      ||+++.........        .....+.       ....++.++|||||||++|||+||+.||...... ....+..+.
T Consensus       152 fg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~  231 (296)
T 4hgt_A          152 FGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS  231 (296)
T ss_dssp             CTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHH
T ss_pred             CccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhh
Confidence            99997643321100        0000000       1123455789999999999999999998642211 000011110


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ...  .....+......+    ..+.+++.+||+.||++||+++||++.|+.+.+..
T Consensus       232 ~~~--~~~~~~~~~~~~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          232 EKK--MSTPIEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHH--HHSCHHHHTTTSC----HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             ccc--ccchhhhhhccCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            000  0000000001111    24778999999999999999999999999887644

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.2e-34  Score=304.34  Aligned_cols=250  Identities=20%  Similarity=0.326  Sum_probs=186.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh------hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||||.++....      ...+.+.+|+.++++++||||+++++++.+..   
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---   81 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKT---   81 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS---
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCC---
Confidence            45888999999999999999975 689999999865321      23678999999999999999999999998753   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----c
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR----I  631 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~----~  631 (766)
                           ..++||||+++++|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++    .
T Consensus        82 -----~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~  150 (283)
T 3bhy_A           82 -----DVVLILELVSGGELFDFLAEKE---SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPR  150 (283)
T ss_dssp             -----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCC
T ss_pred             -----eEEEEEeecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCc
Confidence                 6899999999999999997643   489999999999999999999997   899999999999999876    8


Q ss_pred             EEEecCCCCcccccccccc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          632 AKLSDYGLSIVSEDINSVG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +||+|||++..........       ...++......++.++||||||+++|||++|+.|+.....  ......+.... 
T Consensus       151 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~-  227 (283)
T 3bhy_A          151 IKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK--QETLTNISAVN-  227 (283)
T ss_dssp             EEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHTTC-
T ss_pred             eEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch--HHHHHHhHhcc-
Confidence            9999999986543321111       0111111123456689999999999999999999864332  11122111110 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHHHh
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN--LQYAAQ  755 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~~~  755 (766)
                       .. .++......+    ..+.+++.+||+.||.+||++.|+++.  ++.+..
T Consensus       228 -~~-~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          228 -YD-FDEEYFSNTS----ELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             -CC-CCHHHHTTCC----HHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             -cC-CcchhcccCC----HHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence             00 0111111111    236789999999999999999999974  555543

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.4e-35  Score=322.91  Aligned_cols=202  Identities=21%  Similarity=0.301  Sum_probs=162.1

Q ss_pred             cCHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-----CCCcccccc
Q 004232          473 FTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-----HPHLVCLLG  546 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-----Hpniv~l~g  546 (766)
                      +++++.....++|++.+.||+|+||.||+|+. .+++.||||+++... ...+.+..|+.++++++     |||||++++
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~  103 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKYHG  103 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEE
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecccc
Confidence            44444444568899999999999999999996 478999999997543 34566788999999986     999999999


Q ss_pred             eeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       547 ~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                      ++...+        ..++||||+ +|+|.+++..... ..+++.....++.|++.||+|||+.   +|+||||||+|||+
T Consensus       104 ~~~~~~--------~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll  170 (360)
T 3llt_A          104 KFMYYD--------HMCLIFEPL-GPSLYEIITRNNY-NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILL  170 (360)
T ss_dssp             EEEETT--------EEEEEECCC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred             eeeECC--------eeEEEEcCC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEE
Confidence            998763        789999999 9999999976542 3488999999999999999999997   89999999999999


Q ss_pred             cC-------------------------CCcEEEecCCCCccccccccc-cc----CCCCCCcccCCCCCCCEeehhHHHH
Q 004232          627 NE-------------------------HRIAKLSDYGLSIVSEDINSV-GG----KQEDPNSWEMTKLEDDVFSFGFMLL  676 (766)
Q Consensus       627 d~-------------------------~~~~kl~DFGla~~~~~~~~~-~~----~~~~~~~~~~~~~~~DV~SfGvil~  676 (766)
                      +.                         ++.+||+|||++......... .+    ..++......++.++|||||||++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  250 (360)
T 3llt_A          171 DDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLA  250 (360)
T ss_dssp             SCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHH
Confidence            75                         789999999999764332211 11    1111111234677899999999999


Q ss_pred             HHhcCCCccccC
Q 004232          677 ESVAGPSVAARK  688 (766)
Q Consensus       677 ElltG~~p~~~~  688 (766)
                      ||+||+.||...
T Consensus       251 ell~g~~pf~~~  262 (360)
T 3llt_A          251 ELYTGSLLFRTH  262 (360)
T ss_dssp             HHHHSSCSCCCS
T ss_pred             HHHHCCCCCCCC
Confidence            999999998743

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1e-34  Score=304.97  Aligned_cols=245  Identities=18%  Similarity=0.294  Sum_probs=184.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|... +|+.||+|++....  ....+.+.+|+.++++++||||+++++++.+.+      
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   78 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEES------   78 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS------
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCC------
Confidence            467899999999999999999864 68999999986542  344577889999999999999999999998653      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI---AKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~---~kl~  635 (766)
                        ..++||||+++|+|.+++....   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.   +||+
T Consensus        79 --~~~~v~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~  150 (284)
T 3kk8_A           79 --FHYLVFDLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLA  150 (284)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred             --EEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEe
Confidence              6899999999999998887653   488999999999999999999997   8999999999999986654   9999


Q ss_pred             cCCCCcccccccccccCCCC-----C--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          636 DYGLSIVSEDINSVGGKQED-----P--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~~~~-----~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      |||++...............     |  .....++.++|||||||++|||++|+.||......  .....+...  ....
T Consensus       151 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~--~~~~  226 (284)
T 3kk8_A          151 DFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAG--AYDY  226 (284)
T ss_dssp             CCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHT--CCCC
T ss_pred             eceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHhc--cccC
Confidence            99999655432221111111     1  11123466889999999999999999998643322  111111111  1111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+.. ...+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       227 ~~~~~-~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          227 PSPEW-DTVT----PEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             CTTTT-TTSC----HHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             Cchhh-cccC----HHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            11111 1111    236789999999999999999999874

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.5e-35  Score=311.49  Aligned_cols=256  Identities=16%  Similarity=0.221  Sum_probs=187.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++.....  .+++.+|+.++++++|++++..++++...+       .
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~-------~   78 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-------D   78 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEET-------T
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCC-------C
Confidence            46789999999999999999995 6799999999865432  246889999999999999888888776543       3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~DF  637 (766)
                      ..++||||+ +|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||++   +.++.+||+||
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df  152 (296)
T 3uzp_A           79 YNVMVMELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDF  152 (296)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred             ceEEEEEec-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence            689999999 999999997543  3489999999999999999999997   89999999999999   57889999999


Q ss_pred             CCCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhc
Q 004232          638 GLSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNS  701 (766)
Q Consensus       638 Gla~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~  701 (766)
                      |++..........        .....+.       ....++.++|||||||++|||+||+.||...... ....+..+..
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  232 (296)
T 3uzp_A          153 GLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISE  232 (296)
T ss_dssp             TTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHH
T ss_pred             CCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcc
Confidence            9997644322110        0000110       1123455789999999999999999998742211 0000111100


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      ..  .....+......+    ..+.+++.+||+.||.+||++.||++.|+++.+...
T Consensus       233 ~~--~~~~~~~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          233 KK--MSTPIEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             HH--HHSCHHHHTTTSC----HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             cc--cCCchHHHHhhCC----HHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence            00  0000000111111    237789999999999999999999999999876543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.5e-35  Score=324.56  Aligned_cols=244  Identities=22%  Similarity=0.346  Sum_probs=178.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--------hhHHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      ..++|.+.+.||+|+||.||+|.. .+++.||||++.....        .....+.+|+++|++++|||||++++++...
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  212 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE  212 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            457899999999999999999985 4689999999865321        1223588999999999999999999998543


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC--
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH--  629 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~--  629 (766)
                               ..++||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.+  
T Consensus       213 ---------~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~  277 (419)
T 3i6u_A          213 ---------DYYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEE  277 (419)
T ss_dssp             ---------EEEEEEECCTTCBGGGGTSSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSS
T ss_pred             ---------ceEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCC
Confidence                     5799999999999999887543   489999999999999999999997   89999999999999754  


Q ss_pred             -CcEEEecCCCCcccccccccc---cCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCcc--chHHHH
Q 004232          630 -RIAKLSDYGLSIVSEDINSVG---GKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ--FLQEEL  696 (766)
Q Consensus       630 -~~~kl~DFGla~~~~~~~~~~---~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~--~~~~~~  696 (766)
                       +.+||+|||+++.........   ++.  ..|..     ...++.++|||||||++|||+||+.||.....  .....+
T Consensus       278 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i  357 (419)
T 3i6u_A          278 DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQI  357 (419)
T ss_dssp             SCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHH
T ss_pred             cceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHH
Confidence             459999999997654322111   110  11111     12234478999999999999999999864321  111111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..    . ..... +......+    ..+.+++.+|++.||.+||++.|+++.
T Consensus       358 ~~----~-~~~~~-~~~~~~~~----~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          358 TS----G-KYNFI-PEVWAEVS----EKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             HT----T-CCCCC-HHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hc----C-CCCCC-chhhcccC----HHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            11    1 00110 11111111    237789999999999999999999863

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.4e-35  Score=330.51  Aligned_cols=240  Identities=19%  Similarity=0.267  Sum_probs=175.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++..   .....+.+.+|+.++++++||||++++++|.+.+     
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~-----  221 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHD-----  221 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETT-----
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCC-----
Confidence            46799999999999999999985 46899999998753   2233466788999999999999999999998764     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|
T Consensus       222 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~D  292 (446)
T 4ejn_A          222 ---RLCFVMEYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITD  292 (446)
T ss_dssp             ---EEEEEECCCSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECC
T ss_pred             ---EEEEEEeeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEcc
Confidence               7899999999999999997653   48899999999999999999997 6   899999999999999999999999


Q ss_pred             CCCCccccccccc-c---cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSV-G---GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~-~---~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+++........ .   ++    .++......++.++|||||||++|||++|+.||......  .....+....  ..+
T Consensus       293 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~--~~~  368 (446)
T 4ejn_A          293 FGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--KLFELILMEE--IRF  368 (446)
T ss_dssp             CCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC--CCC
T ss_pred             CCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH--HHHHHHHhCC--CCC
Confidence            9999753221111 0   11    111111234567899999999999999999999643321  1122221111  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                        |   ...+    ..+.+++.+||+.||.+||     +++|+++
T Consensus       369 --p---~~~~----~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          369 --P---RTLG----PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             --C---TTSC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             --C---ccCC----HHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence              1   1111    2367899999999999999     9999875

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=1.2e-34  Score=307.67  Aligned_cols=244  Identities=18%  Similarity=0.293  Sum_probs=183.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||+++.......+.+.+|+.++++++||||+++++++.+.+        .
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------~   80 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTT--------H   80 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSS--------E
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCC--------E
Confidence            56888999999999999999864 78999999998665555677899999999999999999999988753        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEecCC
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLSDYG  638 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~DFG  638 (766)
                      .++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +|+||||||+||++   +.++.+||+|||
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg  154 (304)
T 2jam_A           81 YYLVMQLVSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFG  154 (304)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCS
T ss_pred             EEEEEEcCCCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCC
Confidence            899999999999999987643   388999999999999999999997   89999999999999   778999999999


Q ss_pred             CCcccccccc------cccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          639 LSIVSEDINS------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       639 la~~~~~~~~------~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ++........      .....++......++.++|||||||++|||++|+.||.....  ......+...  ......+ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~--~~~~~~~-  229 (304)
T 2jam_A          155 LSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKLFEKIKEG--YYEFESP-  229 (304)
T ss_dssp             TTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHC--CCCCCTT-
T ss_pred             cceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcC--CCCCCcc-
Confidence            9865432211      111112222223345678999999999999999999864332  1111222111  1111111 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .....+    ..+.+++.+|++.||.+||++.|+++.
T Consensus       230 ~~~~~~----~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          230 FWDDIS----ESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             TTTTSC----HHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ccccCC----HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            111112    236789999999999999999999863

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.8e-36  Score=328.81  Aligned_cols=253  Identities=18%  Similarity=0.260  Sum_probs=187.1

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceee
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCI  549 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~  549 (766)
                      .++++....++|++.+.||+|+||+||+|+.. +|+.||||+++...   ....+.+.+|..++.+++||||+++++++.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            34555556789999999999999999999974 79999999996532   222345888999999999999999999998


Q ss_pred             cCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      +.+        .+|+||||+++|+|.+++.+..  ..+++.....++.+|+.||+|||+.   +|+||||||+|||+|.+
T Consensus       132 ~~~--------~~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~  198 (412)
T 2vd5_A          132 DEN--------YLYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRC  198 (412)
T ss_dssp             CSS--------EEEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred             eCC--------EEEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCC
Confidence            753        7899999999999999997643  2488999999999999999999997   89999999999999999


Q ss_pred             CcEEEecCCCCccccccccc-----ccCCC--CCCc---------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchH
Q 004232          630 RIAKLSDYGLSIVSEDINSV-----GGKQE--DPNS---------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ  693 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~-----~~~~~--~~~~---------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~  693 (766)
                      +++||+|||+++........     .++..  .|..         ...++.++|||||||++|||+||+.||.....  .
T Consensus       199 g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~  276 (412)
T 2vd5_A          199 GHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST--A  276 (412)
T ss_dssp             SCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSH--H
T ss_pred             CCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCH--H
Confidence            99999999999764332111     11110  1110         12356788999999999999999999974332  2


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCC---CCHHHHHH
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSR---PSFEDILW  748 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~R---Ps~~ev~~  748 (766)
                      .....+.....  ...-|......+    ..+.+++.+|++ +|.+|   |+++||.+
T Consensus       277 ~~~~~i~~~~~--~~~~p~~~~~~s----~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          277 ETYGKIVHYKE--HLSLPLVDEGVP----EEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             HHHHHHHTHHH--HCCCC----CCC----HHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             HHHHHHHhccc--CcCCCccccCCC----HHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            22222221110  001111111112    236789999999 99998   58888754

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.3e-34  Score=305.24  Aligned_cols=246  Identities=23%  Similarity=0.306  Sum_probs=182.2

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      |.+.+.||+|+||.||+|.. .++..||+|.+...  .....+.+.+|+.++++++||||+++++++......    ...
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~----~~~  103 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG----KKC  103 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSS----CEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCC----Cce
Confidence            66778899999999999986 46889999998653  344567899999999999999999999998764211    136


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCC
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLS  640 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla  640 (766)
                      .++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.. ++|+||||||+||+++ .++.+||+|||++
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~  179 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLA  179 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred             EEEEEEecCCCCHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCc
Confidence            899999999999999997643   3889999999999999999999972 2399999999999998 7899999999998


Q ss_pred             cccccccccc--cCC--CCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          641 IVSEDINSVG--GKQ--EDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       641 ~~~~~~~~~~--~~~--~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ..........  ++.  ..|. ....++.++|||||||++|||+||+.||...... ......+.... .....+    .
T Consensus       180 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~-~~~~~~----~  253 (290)
T 1t4h_A          180 TLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA-AQIYRRVTSGV-KPASFD----K  253 (290)
T ss_dssp             GGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-HHHHHHHTTTC-CCGGGG----G
T ss_pred             ccccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH-HHHHHHHhccC-CccccC----C
Confidence            6543221111  110  0111 1134567889999999999999999998643221 11112111111 111111    1


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...    ..+.+++.+||+.||.+|||+.||++
T Consensus       254 ~~~----~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          254 VAI----PEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             CCC----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCC----HHHHHHHHHHccCChhhCCCHHHHhh
Confidence            111    23778999999999999999999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.3e-34  Score=315.71  Aligned_cols=249  Identities=21%  Similarity=0.321  Sum_probs=186.9

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--------hhhHHHHHHHHHHHHhC-CCCCcccccc
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKL-RHPHLVCLLG  546 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l-~Hpniv~l~g  546 (766)
                      ......++|++.+.||+|+||.||+|+.. +|+.||||++....        ....+.+.+|+.+++++ +||||+++++
T Consensus        88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            34445677999999999999999999975 79999999986432        12245688999999999 7999999999


Q ss_pred             eeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          547 HCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       547 ~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                      ++...+        ..++||||+++|+|.+++....   .+++..+..++.||+.||+|||+.   +|+||||||+||++
T Consensus       168 ~~~~~~--------~~~lv~e~~~g~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~  233 (365)
T 2y7j_A          168 SYESSS--------FMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILL  233 (365)
T ss_dssp             EEEBSS--------EEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred             EEeeCC--------EEEEEEEeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEE
Confidence            988753        7899999999999999987543   488999999999999999999997   89999999999999


Q ss_pred             cCCCcEEEecCCCCcccccccccccCCC-----CCCc--------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchH
Q 004232          627 NEHRIAKLSDYGLSIVSEDINSVGGKQE-----DPNS--------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ  693 (766)
Q Consensus       627 d~~~~~kl~DFGla~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~  693 (766)
                      +.++.+||+|||++..............     .|..        ...++.++|||||||++|||+||+.||......  
T Consensus       234 ~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~--  311 (365)
T 2y7j_A          234 DDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI--  311 (365)
T ss_dssp             CTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--
T ss_pred             CCCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH--
Confidence            9999999999999865433221111100     1110        113566899999999999999999998643321  


Q ss_pred             HHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       694 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .....+...  ......+.. ...+    ..+.+++.+|++.||.+||++.|+++
T Consensus       312 ~~~~~i~~~--~~~~~~~~~-~~~~----~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          312 LMLRMIMEG--QYQFSSPEW-DDRS----STVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             HHHHHHHHT--CCCCCHHHH-SSSC----HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHhC--CCCCCCccc-ccCC----HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            111111111  111111111 1111    23678999999999999999999975

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.8e-35  Score=310.61  Aligned_cols=253  Identities=21%  Similarity=0.300  Sum_probs=184.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|++++++++||||+++++++.+.+       
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-------   75 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR-------   75 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-------
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCC-------
Confidence            57888999999999999999965 58999999886543  334567889999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++++|..++....   .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        76 -~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~  148 (311)
T 4agu_A           76 -RLHLVFEYCDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGF  148 (311)
T ss_dssp             -EEEEEEECCSEEHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             -eEEEEEEeCCCchHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCC
Confidence             6899999999999998876543   388999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc-----ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHH-HHhhhhc--------
Q 004232          640 SIVSEDINSV-----GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQE-ELDSLNS--------  701 (766)
Q Consensus       640 a~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~-~~~~~~~--------  701 (766)
                      +.........     +... ..|.   ....++.++|||||||++|||+||+.|+......... .+.....        
T Consensus       149 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (311)
T 4agu_A          149 ARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQ  228 (311)
T ss_dssp             CEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             chhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccc
Confidence            9654322111     1000 1111   1134567899999999999999999998754322111 1111000        


Q ss_pred             ----cc--CccccccccccCCCC---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 ----QE--GRQRLVDPVVMATSS---LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ----~~--~~~~~~d~~~~~~~~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ..  ....+.++.......   ......+.+++.+||+.||.+|||++|+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          229 VFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             HHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence                00  001111111000000   0112337789999999999999999999854

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=8.3e-35  Score=315.06  Aligned_cols=236  Identities=18%  Similarity=0.295  Sum_probs=179.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..++|++.+.||+|+||+||+|+.. +|+.||||+++...   ....+.+..|..+++.+ +||||+++++++.+.+   
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~---   94 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD---   94 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSS---
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCC---
Confidence            3578999999999999999999975 58899999997542   23356788899999988 8999999999988753   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           ..|+||||+++|+|.+++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+
T Consensus        95 -----~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~  163 (353)
T 2i0e_A           95 -----RLYFVMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA  163 (353)
T ss_dssp             -----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred             -----EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEE
Confidence                 7899999999999999997643   388999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccc-cc---ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          636 DYGLSIVSEDIN-SV---GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       636 DFGla~~~~~~~-~~---~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |||+++...... ..   .++.    ++......++.++|||||||++|||++|+.||.....  ......+....  ..
T Consensus       164 DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~~--~~  239 (353)
T 2i0e_A          164 DFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEHN--VA  239 (353)
T ss_dssp             CCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CC
T ss_pred             eCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--HHHHHHHHhCC--CC
Confidence            999997532111 11   1111    1101123456688999999999999999999874332  22222222111  11


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      +  |   ...+    ..+.+++.+|++.||.+||++
T Consensus       240 ~--p---~~~s----~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          240 Y--P---KSMS----KEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             C--C---TTSC----HHHHHHHHHHTCSCTTSCTTC
T ss_pred             C--C---CCCC----HHHHHHHHHHhhcCHHHcCCC
Confidence            1  1   1111    236789999999999999964

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=5e-35  Score=321.71  Aligned_cols=241  Identities=17%  Similarity=0.254  Sum_probs=179.7

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCC--CCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLR--HPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~--Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..|++.+.||+|+||.||+|...+++.||||++...  .....+.+.+|+++|++++  |||||++++++...+      
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~------  129 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ------  129 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS------
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCC------
Confidence            458899999999999999999888999999998643  3445678999999999996  599999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+++||| +.+|+|.+++.+..   .+++..+..++.||+.||+|||+.   +|+||||||+|||++ ++.+||+|||
T Consensus       130 --~~~lv~E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG  199 (390)
T 2zmd_A          130 --YIYMVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFG  199 (390)
T ss_dssp             --EEEEEEE-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCS
T ss_pred             --EEEEEEe-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecC
Confidence              6899999 67889999998653   478999999999999999999997   899999999999996 5899999999


Q ss_pred             CCcccccccc------cccCC--CCCCc-------------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHh
Q 004232          639 LSIVSEDINS------VGGKQ--EDPNS-------------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELD  697 (766)
Q Consensus       639 la~~~~~~~~------~~~~~--~~~~~-------------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~  697 (766)
                      +++.......      ..++.  ..|..             ...++.++|||||||++|||++|+.||...... ...+.
T Consensus       200 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~-~~~~~  278 (390)
T 2zmd_A          200 IANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-ISKLH  278 (390)
T ss_dssp             SSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-HHHHH
T ss_pred             ccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH-HHHHH
Confidence            9975432211      00110  01111             023556789999999999999999998643221 11222


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+........+  +.   ..+    ..+.+++.+||+.||.+||++.||++.
T Consensus       279 ~~~~~~~~~~~--~~---~~~----~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          279 AIIDPNHEIEF--PD---IPE----KDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             HHHCTTSCCCC--CC---CSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHhCccccCCC--Cc---cch----HHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            22111111111  11   111    236789999999999999999999865

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.3e-35  Score=321.08  Aligned_cols=194  Identities=24%  Similarity=0.430  Sum_probs=149.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|++.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+.+++++. |||||++++++...+.   
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~---   83 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADND---   83 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTS---
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCC---
Confidence            457899999999999999999985 47999999998643  3445677889999999997 9999999999976532   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ..+|+|||||+ |+|..++...    .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus        84 ---~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~D  152 (388)
T 3oz6_A           84 ---RDVYLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVAD  152 (388)
T ss_dssp             ---SCEEEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred             ---CEEEEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecC
Confidence               35899999998 5899988753    388999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc--------------------------cccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccc
Q 004232          637 YGLSIVSEDINS--------------------------VGGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       637 FGla~~~~~~~~--------------------------~~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~  686 (766)
                      ||+++.......                          .++.. ..|.   ....++.++|||||||++|||++|+.||.
T Consensus       153 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          153 FGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             CTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             CcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            999975422100                          00000 0111   11345667899999999999999999997


Q ss_pred             cC
Q 004232          687 RK  688 (766)
Q Consensus       687 ~~  688 (766)
                      ..
T Consensus       233 ~~  234 (388)
T 3oz6_A          233 GS  234 (388)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.4e-35  Score=307.49  Aligned_cols=232  Identities=13%  Similarity=0.108  Sum_probs=179.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|++.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+.++++++||||+++++++.+.+      
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~------  104 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRA------  104 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT------
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECC------
Confidence            56888999999999999999965 58999999997542   344578999999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..|+||||+++|+|.+++.+.     ....+...++.|++.||+|||+.   +|+||||||+|||++.++.+||+++|
T Consensus       105 --~~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~  174 (286)
T 3uqc_A          105 --GGLVVAEWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA  174 (286)
T ss_dssp             --EEEEEEECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred             --cEEEEEEecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc
Confidence              689999999999999998542     34556788999999999999997   89999999999999999999999765


Q ss_pred             CCcccccccccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc-cccCCC
Q 004232          639 LSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP-VVMATS  717 (766)
Q Consensus       639 la~~~~~~~~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~  717 (766)
                      ..                   ...+.++|||||||++|||+||+.||........  +..... ........+ ......
T Consensus       175 ~~-------------------~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~  232 (286)
T 3uqc_A          175 TM-------------------PDANPQDDIRGIGASLYALLVNRWPLPEAGVRSG--LAPAER-DTAGQPIEPADIDRDI  232 (286)
T ss_dssp             CC-------------------TTCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC--SEECCB-CTTSCBCCHHHHCTTS
T ss_pred             cc-------------------CCCCchhHHHHHHHHHHHHHHCCCCCCcCCcchh--hHHHHH-HhccCCCChhhcccCC
Confidence            42                   1245688999999999999999999874322100  000000 000000000 011111


Q ss_pred             CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          718 SLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       718 ~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      +    ..+.+++.+||+.||.+| |+.|++++|+.+....
T Consensus       233 ~----~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~  267 (286)
T 3uqc_A          233 P----FQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA  267 (286)
T ss_dssp             C----HHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred             C----HHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence            1    237789999999999999 9999999999987543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=305.07  Aligned_cols=261  Identities=20%  Similarity=0.234  Sum_probs=180.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-----hhhHHHHHHHHHHHHhC---CCCCcccccceeecC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-----KYTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDG  551 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~  551 (766)
                      ..++|++.+.||+|+||+||+|+. .+|+.||||++....     ......+.+|+++++++   +||||++++++|.+.
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            357899999999999999999995 578999999986322     11134566777777666   499999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      ....   ....++||||+. |+|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.
T Consensus        87 ~~~~---~~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~  158 (308)
T 3g33_A           87 RTDR---EIKVTLVFEHVD-QDLRTYLDKAPP-PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGT  158 (308)
T ss_dssp             CSSS---EEEEEEEEECCC-CBHHHHHHTCCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSC
T ss_pred             CCCC---ceeEEEEehhhh-cCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCC
Confidence            4211   125799999998 599999876542 3489999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccccc---CC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc
Q 004232          632 AKLSDYGLSIVSEDINSVGG---KQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE  703 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~---~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~  703 (766)
                      +||+|||+++..........   +.    ++......++.++|||||||++|||+||+.||....... ...+.......
T Consensus       159 ~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  238 (308)
T 3g33_A          159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP  238 (308)
T ss_dssp             EEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             EEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence            99999999975432211111   11    111112345778999999999999999999987443211 11111111000


Q ss_pred             Ccccc------cccccc--CCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 GRQRL------VDPVVM--ATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 ~~~~~------~d~~~~--~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....+      ......  .....     +....+.+++.+|++.||.+|||+.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            00000      000000  00000     112346789999999999999999999753

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.8e-35  Score=309.78  Aligned_cols=253  Identities=23%  Similarity=0.315  Sum_probs=185.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|.+...  .....+.+.+|++++++++||||+++++++.+...     
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~-----   79 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTN-----   79 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGG-----
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCC-----
Confidence            367888999999999999999864 6899999999754  23456789999999999999999999998865321     


Q ss_pred             cceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCCC--CCcccCCCCCCceEEcCCCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGVI--PGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~~--~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                       ...++||||+++|+|.+++.... ....+++..+..++.+++.||+|||+...  .+|+||||||+||+++.++.+||+
T Consensus        80 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~  158 (279)
T 2w5a_A           80 -TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  158 (279)
T ss_dssp             -TEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEEC
T ss_pred             -ceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEe
Confidence             36899999999999999987532 23348999999999999999999999720  129999999999999999999999


Q ss_pred             cCCCCcccccccc-----ccc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          636 DYGLSIVSEDINS-----VGG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       636 DFGla~~~~~~~~-----~~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |||++........     .+.   ..++......++.++|||||||++|||+||+.|+......  .....+.. .....
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~-~~~~~  235 (279)
T 2w5a_A          159 DFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIRE-GKFRR  235 (279)
T ss_dssp             CCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH-TCCCC
T ss_pred             cCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHHhh-ccccc
Confidence            9999865432211     011   1111111123456789999999999999999998743321  11111111 11111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      +     ....+    ..+.+++.+||+.||.+||++.||++.+..
T Consensus       236 ~-----~~~~~----~~l~~li~~~l~~~p~~Rps~~~ll~~~~~  271 (279)
T 2w5a_A          236 I-----PYRYS----DELNEIITRMLNLKDYHRPSVEEILENPLI  271 (279)
T ss_dssp             C-----CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             C-----CcccC----HHHHHHHHHHcCCCcccCCCHHHHHhChhh
Confidence            1     11112    236789999999999999999999876543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=4.8e-35  Score=322.86  Aligned_cols=248  Identities=17%  Similarity=0.249  Sum_probs=176.6

Q ss_pred             hcCCCcC-CceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHH-hCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMS-AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLA-KLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~-~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|.+. ++||+|+||+||+|+.. +|+.||||+++..     ..+.+|+.++. ..+||||+++++++.....    .
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~----~  130 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYA----G  130 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEET----T
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeeccc----C
Confidence            3456665 68999999999999864 6899999998643     34667888764 4589999999998864210    0


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~  635 (766)
                      ...+|+||||+++|+|.+++.+.. ...+++..+..++.+|+.||+|||+.   +|+||||||+|||++.   ++.+||+
T Consensus       131 ~~~~~lv~E~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~  206 (400)
T 1nxk_A          131 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT  206 (400)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEEC
T ss_pred             CcEEEEEEEeCCCCcHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEE
Confidence            136899999999999999997643 23589999999999999999999997   8999999999999997   7899999


Q ss_pred             cCCCCcccccccccc-------cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHHhhhhcccCcc
Q 004232          636 DYGLSIVSEDINSVG-------GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EELDSLNSQEGRQ  706 (766)
Q Consensus       636 DFGla~~~~~~~~~~-------~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~~~~~~~~~~~  706 (766)
                      |||+++.........       +..++......++.++|||||||++|||++|+.||........  .....+..  ...
T Consensus       207 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~--~~~  284 (400)
T 1nxk_A          207 DFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM--GQY  284 (400)
T ss_dssp             CCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHH--TCC
T ss_pred             ecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHc--Ccc
Confidence            999997643321111       1111111223456688999999999999999999864321100  00011111  011


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+..+.. ...+    ..+.+++.+||+.||.+|||+.||++.
T Consensus       285 ~~~~~~~-~~~s----~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          285 EFPNPEW-SEVS----EEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             CCCTTTT-TTSC----HHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             cCCCccc-ccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1111111 1112    236789999999999999999999875

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=6.5e-35  Score=309.27  Aligned_cols=244  Identities=21%  Similarity=0.351  Sum_probs=182.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .+.|++.+.||+|+||.||+|+.. +++.||+|.+........+.+.+|+.++++++||||+++++++.+.+        
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--------   89 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDG--------   89 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC---------
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCC--------
Confidence            467888999999999999999975 58999999997766566788999999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        90 ~~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           90 KLWIMIEFCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             eEEEEEEeCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            6899999999999999887532  3488999999999999999999997   8999999999999999999999999987


Q ss_pred             cccccc----cc-cccCC-CCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          641 IVSEDI----NS-VGGKQ-EDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       641 ~~~~~~----~~-~~~~~-~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      ......    .. .+... ..|.       ....++.++|||||||++|||+||+.|+.....  ......+.... ...
T Consensus       165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~-~~~  241 (302)
T 2j7t_A          165 AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKSD-PPT  241 (302)
T ss_dssp             HHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSC-CCC
T ss_pred             ccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH--HHHHHHHhccC-Ccc
Confidence            432111    00 01100 1111       123456689999999999999999999864332  11111111111 111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ...+.   ..+    ..+.+++.+||+.||.+|||+.||++
T Consensus       242 ~~~~~---~~~----~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          242 LLTPS---KWS----VEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             CSSGG---GSC----HHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             cCCcc---ccC----HHHHHHHHHHcccChhhCCCHHHHhc
Confidence            11111   111    23678999999999999999999975

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.4e-34  Score=302.33  Aligned_cols=243  Identities=23%  Similarity=0.335  Sum_probs=182.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||.+.... ....+.+.+|+.++++++||||+++++++.+.+       
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   78 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN-------   78 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT-------
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCC-------
Confidence            456888999999999999999865 68999999986443 234578899999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++...   ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        79 -~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~  151 (276)
T 2yex_A           79 -IQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL  151 (276)
T ss_dssp             -EEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             -EEEEEEEecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCC
Confidence             689999999999999998653   3488999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccc------c-ccCC-CCCCcc---cCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          640 SIVSEDINS------V-GGKQ-EDPNSW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       640 a~~~~~~~~------~-~~~~-~~~~~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      +........      . +... ..|...   ...+.++|||||||++|||+||+.||.......... .......  .. 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~--~~-  227 (276)
T 2yex_A          152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-SDWKEKK--TY-  227 (276)
T ss_dssp             CEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHH-HHHHTTC--TT-
T ss_pred             ccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHH-HHhhhcc--cc-
Confidence            865322110      0 0000 111111   112346899999999999999999987543221111 1111110  00 


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+  ....+    ..+.+++.+||+.||.+|||+.||++
T Consensus       228 ~~~--~~~~~----~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          228 LNP--WKKID----SAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             STT--GGGSC----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cCc--hhhcC----HHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            000  00111    23678999999999999999999975

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.8e-34  Score=306.24  Aligned_cols=242  Identities=19%  Similarity=0.342  Sum_probs=185.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .+.|+..+.||+|+||.||+|+. .+++.||||.+.... ....+.+.+|+.++++++||||+++++++.+..       
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   93 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDT-------   93 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-------
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-------
Confidence            35688889999999999999985 468999999986543 344678999999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++...    .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        94 -~~~lv~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~  165 (303)
T 3a7i_A           94 -KLWIIMEYLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV  165 (303)
T ss_dssp             -EEEEEEECCTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             -eEEEEEEeCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeeccc
Confidence             689999999999999998642    488999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc----c----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSVG----G----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~~----~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +..........    +    ..++......++.++|||||||++|||++|+.|+......  .....+.. ...     +
T Consensus       166 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~-~~~-----~  237 (303)
T 3a7i_A          166 AGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPK-NNP-----P  237 (303)
T ss_dssp             CEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHH-SCC-----C
T ss_pred             ceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhc-CCC-----C
Confidence            86543321110    0    0011011123456889999999999999999998643321  11111111 111     1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                      ......+    ..+.+++.+||+.||.+|||+.||++..
T Consensus       238 ~~~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          238 TLEGNYS----KPLKEFVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             CCCSSCC----HHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             CCccccC----HHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence            1111122    2367899999999999999999998753

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.1e-35  Score=309.92  Aligned_cols=248  Identities=19%  Similarity=0.359  Sum_probs=178.9

Q ss_pred             cCCCcCCceecCCceeEEEEEec--CCc--eEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE--NGT--SVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~--~g~--~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|++.+.||+|+||.||+|++.  ++.  .||||+++..   .....+.+.+|++++++++||||+++++++.+.    
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~----   93 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP----   93 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC----
Confidence            56888999999999999999853  333  6899998754   234567899999999999999999999998764    


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        94 -----~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~  163 (291)
T 1u46_A           94 -----PMKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIG  163 (291)
T ss_dssp             -----SCEEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEEC
T ss_pred             -----CceeeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEc
Confidence                 3689999999999999987642  2488999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCcccccccccc---cCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhccc
Q 004232          636 DYGLSIVSEDINSVG---GKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       636 DFGla~~~~~~~~~~---~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      |||++..........   .....+..+        ..++.++|||||||++|||++ |+.|+.....  ......+....
T Consensus       164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~~~  241 (291)
T 1u46_A          164 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--SQILHKIDKEG  241 (291)
T ss_dssp             CCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHTSC
T ss_pred             cccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH--HHHHHHHHccC
Confidence            999986643221110   000000011        223457899999999999999 9999864322  12222221111


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..  ...+   ...+    ..+.+++.+||+.||.+||++.+|++.|+++..
T Consensus       242 ~~--~~~~---~~~~----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          242 ER--LPRP---EDCP----QDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             CC--CCCC---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             CC--CCCC---cCcC----HHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence            11  1111   1111    347789999999999999999999999998753

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.4e-34  Score=315.16  Aligned_cols=266  Identities=16%  Similarity=0.256  Sum_probs=187.0

Q ss_pred             HHHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh-----------hhhHHHHHHHHHHHHhCCCCCccc
Q 004232          475 LEELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK-----------KYTVRNLKLRLDLLAKLRHPHLVC  543 (766)
Q Consensus       475 ~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-----------~~~~~~~~~e~~~l~~l~Hpniv~  543 (766)
                      .+++....++|.+.+.||+|+||.||+|+..+|..||||++....           ....+.+.+|++++++++||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            567888889999999999999999999998889999999885421           122478999999999999999999


Q ss_pred             ccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCc
Q 004232          544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNN  623 (766)
Q Consensus       544 l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~N  623 (766)
                      +++++...+..   .....++||||++ |+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+|
T Consensus        94 ~~~~~~~~~~~---~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~N  164 (362)
T 3pg1_A           94 LRDIFVHFEEP---AMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGN  164 (362)
T ss_dssp             CSEEEEECCTT---TCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGG
T ss_pred             eeeeEEeccCC---CcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHH
Confidence            99998764311   1236899999999 68888886542  3589999999999999999999997   89999999999


Q ss_pred             eEEcCCCcEEEecCCCCcccccccccc---cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HH
Q 004232          624 ILLNEHRIAKLSDYGLSIVSEDINSVG---GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QE  694 (766)
Q Consensus       624 ILld~~~~~kl~DFGla~~~~~~~~~~---~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~  694 (766)
                      |+++.++.+||+|||++..........   ++.  ..|.   ....++.++|||||||++|||+||+.||....... ..
T Consensus       165 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~  244 (362)
T 3pg1_A          165 ILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN  244 (362)
T ss_dssp             EEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred             EEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            999999999999999996432221111   000  1111   11345677899999999999999999987433211 11


Q ss_pred             HHhhhhcccCcc-----------cccccccc--CCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          695 ELDSLNSQEGRQ-----------RLVDPVVM--ATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       695 ~~~~~~~~~~~~-----------~~~d~~~~--~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+..........           ........  .....     .....+.+++.+|++.||.+|||+.|+++.
T Consensus       245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence            111100000000           00000000  00000     012347789999999999999999999864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.5e-34  Score=305.32  Aligned_cols=241  Identities=21%  Similarity=0.313  Sum_probs=184.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+.||+|+||.||+|+.. +++.||+|.+...   .....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----   88 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND-----   88 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC-----
Confidence            356888999999999999999965 5889999998653   2345677899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++++|.+++....   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        89 ---~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df  159 (294)
T 2rku_A           89 ---FVFVVLELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF  159 (294)
T ss_dssp             ---EEEEEEECCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred             ---EEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEec
Confidence               6899999999999999887543   488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc----cCC--CCC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVG----GKQ--EDP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~----~~~--~~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++..........    ++.  ..|  ......+.++|||||||++|||+||+.|+.....  .+....+....  ..+ 
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~--~~~-  234 (294)
T 2rku_A          160 GLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL--KETYLRIKKNE--YSI-  234 (294)
T ss_dssp             TTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHTTC--CCC-
T ss_pred             cCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhhcc--CCC-
Confidence            9986543211110    000  001  1112345678999999999999999999864332  12122221111  111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       +   ...+    ..+.+++.+||+.||.+||+++|+++.
T Consensus       235 -~---~~~~----~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          235 -P---KHIN----PVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             -C---TTSC----HHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -c---cccC----HHHHHHHHHHcccChhhCcCHHHHhhC
Confidence             1   1111    236788999999999999999999875

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=5.6e-35  Score=313.38  Aligned_cols=237  Identities=16%  Similarity=0.221  Sum_probs=172.1

Q ss_pred             CCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcceEEEE
Q 004232          488 SAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      .+.||+|+||.||+|+.. +|+.||||++...   ....+.+|+.++++++ ||||+++++++.+..        ..++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~--------~~~lv   84 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQL--------HTFLV   84 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS--------EEEEE
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCC--------EEEEE
Confidence            378999999999999864 6899999998643   3456788999999997 999999999998753        78999


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC---cEEEecCCCCcc
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR---IAKLSDYGLSIV  642 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~---~~kl~DFGla~~  642 (766)
                      |||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++   .+||+|||+++.
T Consensus        85 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           85 MELLNGGELFERIKKKK---HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             ECCCCSCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EEccCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence            99999999999998653   489999999999999999999997   899999999999998665   899999999975


Q ss_pred             ccccccc--------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc-----chHHHHhhhhcccCccccc
Q 004232          643 SEDINSV--------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ-----FLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       643 ~~~~~~~--------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  709 (766)
                      .......        .+..++......++.++|||||||++|||++|+.||.....     ........+....  ....
T Consensus       159 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~--~~~~  236 (325)
T 3kn6_A          159 KPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGD--FSFE  236 (325)
T ss_dssp             CCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTC--CCCC
T ss_pred             cCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCC--CCCC
Confidence            4322111        01111111223345678999999999999999999864321     1111122221111  0111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+.. ..    ....+.+++.+|++.||.+|||++|+++
T Consensus       237 ~~~~-~~----~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          237 GEAW-KN----VSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             SHHH-HT----SCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             cccc-cC----CCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence            0000 01    1234778999999999999999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=7.5e-35  Score=317.65  Aligned_cols=242  Identities=20%  Similarity=0.302  Sum_probs=173.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHH-HHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDL-LAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~-l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||+||+|+.. +++.||||+++...   ....+.+.+|..+ ++.++|||||++++++.+.+    
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~----  112 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTAD----  112 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSS----
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCC----
Confidence            467999999999999999999965 58899999996543   2234556667766 57789999999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..|+||||+++|+|.+++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||++.++++||+|
T Consensus       113 ----~~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~D  182 (373)
T 2r5t_A          113 ----KLYFVLDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTD  182 (373)
T ss_dssp             ----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred             ----EEEEEEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEee
Confidence                7899999999999999997643   378888899999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccc-c---ccCCCC--C--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINS-V---GGKQED--P--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~-~---~~~~~~--~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+++....... .   .++..+  |  .....++.++|||||||++|||++|+.||.....  ......+....  ..+
T Consensus       183 FG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~~--~~~  258 (373)
T 2r5t_A          183 FGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--AEMYDNILNKP--LQL  258 (373)
T ss_dssp             CCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH--HHHHHHHHHSC--CCC
T ss_pred             CccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHhcc--cCC
Confidence            999975322111 1   111110  1  1123456788999999999999999999864332  22222222211  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNL  750 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L  750 (766)
                       .    ...+    ..+.+++.+|++.||.+||++.+.+..+
T Consensus       259 -~----~~~~----~~~~~li~~lL~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          259 -K----PNIT----NSARHLLEGLLQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             -C----SSSC----HHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred             -C----CCCC----HHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence             1    1111    2367899999999999999986544333

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.1e-35  Score=314.13  Aligned_cols=243  Identities=21%  Similarity=0.311  Sum_probs=178.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||+++....    ...+|++++.++ +||||+++++++.+.+       
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~-------   89 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGK-------   89 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSS-------
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCC-------
Confidence            467899999999999999999864 689999999976532    235678888887 7999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----CcEEEe
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH----RIAKLS  635 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~----~~~kl~  635 (766)
                       ..++||||+++|+|.+++.+..   .+++.....++.+|+.||+|||+.   +|+||||||+|||+.++    +.+||+
T Consensus        90 -~~~lv~E~~~gg~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~  162 (342)
T 2qr7_A           90 -YVYVVTELMKGGELLDKILRQK---FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRIC  162 (342)
T ss_dssp             -EEEEEECCCCSCBHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEEC
T ss_pred             -EEEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEE
Confidence             7899999999999999987543   488999999999999999999997   89999999999998533    359999


Q ss_pred             cCCCCcccccccccccC-CCCCCcc-------cCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCcc
Q 004232          636 DYGLSIVSEDINSVGGK-QEDPNSW-------EMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQ  706 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~-~~~~~~~-------~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~  706 (766)
                      |||+++........... ...+.+.       ..++.++|||||||++|||++|..||....... ......+....  .
T Consensus       163 Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~--~  240 (342)
T 2qr7_A          163 DFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGK--F  240 (342)
T ss_dssp             CCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCC--C
T ss_pred             ECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCC--c
Confidence            99999764332211111 1111110       113457899999999999999999997432222 22222222111  1


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....+ .....+    ..+.+++.+|++.||.+||++.||++.
T Consensus       241 ~~~~~-~~~~~s----~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          241 SLSGG-YWNSVS----DTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             CCCST-TTTTSC----HHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ccCcc-ccccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            11111 111112    236789999999999999999999864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.4e-34  Score=311.71  Aligned_cols=241  Identities=21%  Similarity=0.313  Sum_probs=184.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+.||+|+||.||+++.. +++.||+|.+...   .....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----  114 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND-----  114 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-----
Confidence            467888999999999999999965 5889999998653   2345677899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++++|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus       115 ---~~~lv~e~~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df  185 (335)
T 2owb_A          115 ---FVFVVLELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF  185 (335)
T ss_dssp             ---EEEEEECCCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCC
T ss_pred             ---eEEEEEecCCCCCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeec
Confidence               7899999999999999887643   488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc----cCC--CCC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVG----GKQ--EDP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~----~~~--~~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++..........    ++.  ..|  ......+.++|||||||++|||++|+.||.....  ...+..+....  ..+ 
T Consensus       186 g~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~--~~~-  260 (335)
T 2owb_A          186 GLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL--KETYLRIKKNE--YSI-  260 (335)
T ss_dssp             TTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCC-
T ss_pred             cCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH--HHHHHHHhcCC--CCC-
Confidence            9996543211110    000  001  0112345678999999999999999999864322  12222221111  111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       +   ...+    ..+.+++.+||+.||.+||++.|+++.
T Consensus       261 -~---~~~~----~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          261 -P---KHIN----PVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             -C---TTSC----HHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             -C---ccCC----HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             0   1111    236788999999999999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=3.3e-34  Score=322.47  Aligned_cols=189  Identities=21%  Similarity=0.354  Sum_probs=142.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++...  .....+++.+|+++|++++|||||++++++......   ..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---~~  129 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVE---KF  129 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTT---TC
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcc---cC
Confidence            67999999999999999999854 7899999998653  344567899999999999999999999998754311   12


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..+|+||||+. |+|.+++...   ..+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       130 ~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          130 DELYVVLEIAD-SDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             CCEEEEECCCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEeccc-cchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeeccccc
Confidence            46899999985 6999988754   3489999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccc--------------------------------cccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcC
Q 004232          640 SIVSEDINS--------------------------------VGGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAG  681 (766)
Q Consensus       640 a~~~~~~~~--------------------------------~~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG  681 (766)
                      ++.......                                .++.. ..|.   ....++.++|||||||++|||+||
T Consensus       203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            976432110                                00000 0111   123456788999999999999994

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1e-34  Score=305.15  Aligned_cols=243  Identities=17%  Similarity=0.247  Sum_probs=181.4

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|++.+.||+|+||.||+|+.. +++.||||+++..  ......++.+|+..+.++ +||||+++++++.+.+    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~----   84 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDD----   84 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETT----
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCC----
Confidence            3467889999999999999999975 7999999998753  234467788999999999 9999999999998763    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-------
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-------  628 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-------  628 (766)
                          ..++||||+++|+|.+++.+... ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.       
T Consensus        85 ----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~  157 (289)
T 1x8b_A           85 ----HMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAA  157 (289)
T ss_dssp             ----EEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------
T ss_pred             ----eEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccc
Confidence                78999999999999999975421 13488999999999999999999997   8999999999999984       


Q ss_pred             ------------CCcEEEecCCCCcccccccccccCC--CCCCcc---cCCCCCCCEeehhHHHHHHhcCCCccccCccc
Q 004232          629 ------------HRIAKLSDYGLSIVSEDINSVGGKQ--EDPNSW---EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF  691 (766)
Q Consensus       629 ------------~~~~kl~DFGla~~~~~~~~~~~~~--~~~~~~---~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~  691 (766)
                                  ...+||+|||++..........++.  ..|...   ...+.++|||||||++|||++|.+++..... 
T Consensus       158 ~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~-  236 (289)
T 1x8b_A          158 SEEGDEDDWASNKVMFKIGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ-  236 (289)
T ss_dssp             ------------CCCEEECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH-
T ss_pred             ccccccccccCCceEEEEcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH-
Confidence                        4479999999987654322211111  011111   1223478999999999999999877643211 


Q ss_pred             hHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ..   .+.. .....+     ....+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       237 -~~---~~~~-~~~~~~-----~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          237 -WH---EIRQ-GRLPRI-----PQVLS----QEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             -HH---HHHT-TCCCCC-----SSCCC----HHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             -HH---HHHc-CCCCCC-----CcccC----HHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence             11   1111 111111     11112    236789999999999999999999753

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.4e-35  Score=325.03  Aligned_cols=246  Identities=13%  Similarity=0.146  Sum_probs=174.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC---hhhhHHHHHHHH---HHHHhCCCCCcccccc-------e
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNLKLRL---DLLAKLRHPHLVCLLG-------H  547 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~~~~e~---~~l~~l~Hpniv~l~g-------~  547 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...   .....+.+.+|+   +++++++|||||++++       +
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46788899999999999999995 57999999998632   334567899999   5566668999999994       4


Q ss_pred             eecCCC---------CCCcCcceEEEEEEccCCCChhhhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 004232          548 CIDGGG---------RDDYAVNKVFLVYEFMSNGNFRTHISENTP----GKVLNWSERLAVLIGVAKAVQFLHTGVIPGF  614 (766)
Q Consensus       548 ~~~~~~---------~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  614 (766)
                      +.+.+.         .+.......++||||+ +|+|.+++.+...    ...++|..+..++.||+.||+|||+.   +|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence            443321         0000001378999999 6899999975321    12245688889999999999999997   89


Q ss_pred             ccCCCCCCceEEcCCCcEEEecCCCCccccccccc-ccCC-CCCC--ccc-----------CCCCCCCEeehhHHHHHHh
Q 004232          615 FNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV-GGKQ-EDPN--SWE-----------MTKLEDDVFSFGFMLLESV  679 (766)
Q Consensus       615 vHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~-~~~~-~~~~--~~~-----------~~~~~~DV~SfGvil~Ell  679 (766)
                      +||||||+|||++.++.+||+|||+++........ .+.. ..|.  ...           .++.++|||||||++|||+
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~ell  307 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIW  307 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999754332111 1111 0111  112           4667899999999999999


Q ss_pred             cCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          680 AGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       680 tG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ||+.||......           .....+... . ...+    ..+.+++.+||+.||.+||++.|+++
T Consensus       308 tg~~Pf~~~~~~-----------~~~~~~~~~-~-~~~~----~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          308 CADLPITKDAAL-----------GGSEWIFRS-C-KNIP----QPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             HSSCCC-----------------CCSGGGGSS-C-CCCC----HHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             HCCCCCcccccc-----------cchhhhhhh-c-cCCC----HHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            999998632110           001111110 0 1112    23678999999999999999999986

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=1.2e-34  Score=338.65  Aligned_cols=249  Identities=20%  Similarity=0.371  Sum_probs=188.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..++|++.+.||+|+||.||+|+..    .+..||||.++... ....+.+.+|+.++++++|||||+++|++.+.    
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~----  463 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN----  463 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC----
Confidence            3467888899999999999999864    25679999987543 34457899999999999999999999998542    


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           ..++||||+++|+|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+
T Consensus       464 -----~~~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~  533 (656)
T 2j0j_A          464 -----PVWIIMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLG  533 (656)
T ss_dssp             -----SCEEEEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred             -----ceEEEEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEE
Confidence                 4799999999999999997643  3488999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccccc-CCC------CC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          636 DYGLSIVSEDINSVGG-KQE------DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       636 DFGla~~~~~~~~~~~-~~~------~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |||+++.......... ...      .|  .....++.++|||||||++|||++ |..||.....  ......+... ..
T Consensus       534 DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--~~~~~~i~~~-~~  610 (656)
T 2j0j_A          534 DFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIGRIENG-ER  610 (656)
T ss_dssp             CCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHHT-CC
T ss_pred             ecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHcC-CC
Confidence            9999976543221100 000      11  111345567899999999999997 8888864322  1112222111 11


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..+  +   ...+    ..+.+++.+||+.||.+||++.||+++|+.+..
T Consensus       611 ~~~--~---~~~~----~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          611 LPM--P---PNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             CCC--C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCC--C---cccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence            111  1   1111    347789999999999999999999999998864

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=317.51  Aligned_cols=236  Identities=17%  Similarity=0.239  Sum_probs=181.4

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--------hhHHHHHHHHHHHHhCCCCCcccccceeecC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG  551 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~  551 (766)
                      ..++|++.+.||+|+||.||+|+. .+++.||||+++....        ...+.+.+|+.++++++||||+++++++.+.
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            346789999999999999999985 5789999999875431        1234677899999999999999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCC-ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNG-NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR  630 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~G-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~  630 (766)
                      +        ..++||||+.+| +|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++
T Consensus       102 ~--------~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~  167 (335)
T 3dls_A          102 G--------FFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDF  167 (335)
T ss_dssp             S--------EEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTS
T ss_pred             C--------EEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCC
Confidence            3        789999999877 9999987643   489999999999999999999997   899999999999999999


Q ss_pred             cEEEecCCCCccccccccccc---CC--CCCC--cccC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          631 IAKLSDYGLSIVSEDINSVGG---KQ--EDPN--SWEM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~~---~~--~~~~--~~~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      .+||+|||++...........   +.  ..|.  .... .+.++|||||||++|||++|+.||.....        ... 
T Consensus       168 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------~~~-  238 (335)
T 3dls_A          168 TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------TVE-  238 (335)
T ss_dssp             CEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG--------GTT-
T ss_pred             cEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH--------HHh-
Confidence            999999999976543221111   10  0111  1111 24578999999999999999999863111        000 


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         .....+.   ..+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       239 ---~~~~~~~---~~~----~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          239 ---AAIHPPY---LVS----KELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             ---TCCCCSS---CCC----HHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             ---hccCCCc---ccC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               0011111   111    236789999999999999999999875

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=8.4e-35  Score=316.74  Aligned_cols=254  Identities=19%  Similarity=0.234  Sum_probs=184.3

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+.. ++..||+|++... .....+.+.+|+.++++++||||+++++++.+.+        
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------  104 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG--------  104 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETT--------
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECC--------
Confidence            56888999999999999999965 6899999998754 3445678999999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.+  +|+||||||+||+++.++.+||+|||++
T Consensus       105 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  179 (360)
T 3eqc_A          105 EISICMEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVS  179 (360)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCC
T ss_pred             EEEEEEECCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCC
Confidence            7899999999999999997653   3889999999999999999999832  6999999999999999999999999998


Q ss_pred             ccccccccc--ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC----------
Q 004232          641 IVSEDINSV--GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG----------  704 (766)
Q Consensus       641 ~~~~~~~~~--~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~----------  704 (766)
                      .........  .++    .++......++.++|||||||++|||+||+.||...................          
T Consensus       180 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (360)
T 3eqc_A          180 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRT  259 (360)
T ss_dssp             HHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC----------------
T ss_pred             cccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCccc
Confidence            643221111  111    1111111234567899999999999999999987433221111100000000          


Q ss_pred             -----------------c----cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 -----------------R----QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 -----------------~----~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                       .    ..+................+.+++.+||+.||.+|||++|+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          260 PGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             --------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                             0    00000000000000011247789999999999999999999865

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.7e-34  Score=301.90  Aligned_cols=241  Identities=22%  Similarity=0.329  Sum_probs=182.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|.+.+.||+|+||.||+|+.. +|+.||||.+....   ....+.+.+|+.++++++||||+++++++.+.+     
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   84 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT-----   84 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC-----
Confidence            357888999999999999999975 79999999986542   223567899999999999999999999988753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++++|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        85 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~df  155 (276)
T 2h6d_A           85 ---DFFMVMEYVSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF  155 (276)
T ss_dssp             ---EEEEEEECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCC
T ss_pred             ---eEEEEEeccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeec
Confidence               7899999999999999997653   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccccc---C--CCCCCcc--c-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGG---K--QEDPNSW--E-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~---~--~~~~~~~--~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |++...........   +  ...|...  . ..+.++||||||+++|||++|+.|+.....  ......+...  ...+ 
T Consensus       156 g~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~--~~~~-  230 (276)
T 2h6d_A          156 GLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV--PTLFKKIRGG--VFYI-  230 (276)
T ss_dssp             CGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC--CCCC-
T ss_pred             ccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH--HHHHHHhhcC--cccC-
Confidence            99865433211100   0  0111111  1 123578999999999999999999864322  1112222111  0111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       |   ...+    ..+.+++.+|++.||.+|||+.||++.
T Consensus       231 -~---~~~~----~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          231 -P---EYLN----RSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             -C---TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             -c---hhcC----HHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             1   1111    236789999999999999999999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.1e-34  Score=329.95  Aligned_cols=245  Identities=19%  Similarity=0.282  Sum_probs=184.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.++||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+++|++++|||||++++++.+.+     
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~-----  257 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKD-----  257 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS-----
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCC-----
Confidence            466888999999999999999864 79999999986532   223567889999999999999999999988753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.... ...+++..+..++.+|+.||+|||+.   +|+||||||+|||++.++++||+||
T Consensus       258 ---~l~lVmEy~~gg~L~~~l~~~~-~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DF  330 (576)
T 2acx_A          258 ---ALCLVLTLMNGGDLKFHIYHMG-QAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL  330 (576)
T ss_dssp             ---EEEEEECCCCSCBHHHHHHSSS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred             ---EEEEEEEcCCCCcHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEec
Confidence               7899999999999999987643 23488999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  709 (766)
                      |+++..............+.       ....++.++|||||||++|||++|+.||...... ....+....... ...+ 
T Consensus       331 Gla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~-~~~~-  408 (576)
T 2acx_A          331 GLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-PEEY-  408 (576)
T ss_dssp             TTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC-CCCC-
T ss_pred             ccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc-cccC-
Confidence            99976543221111111111       1123456789999999999999999999753221 111111111110 0111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                          ....+    ..+.+|+.+|++.||.+||     +++||++
T Consensus       409 ----p~~~s----~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          409 ----SERFS----PQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             ----CTTSC----HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             ----CccCC----HHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence                01111    2367899999999999999     6777764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=5.4e-35  Score=309.82  Aligned_cols=253  Identities=19%  Similarity=0.322  Sum_probs=170.3

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++.... ....+++.+|+.++++++||||+++++++.+.+      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   86 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD------   86 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSS------
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC------
Confidence            357899999999999999999985 468999999986543 334567889999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          559 VNKVFLVYEFMSNGNFRTHISEN-----TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~-----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                        ..++||||+++|+|.+++...     .....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+|
T Consensus        87 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~k  161 (303)
T 2vwi_A           87 --ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQ  161 (303)
T ss_dssp             --CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEE
T ss_pred             --CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEE
Confidence              689999999999999988641     1234589999999999999999999997   899999999999999999999


Q ss_pred             EecCCCCccccccccc---------ccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh
Q 004232          634 LSDYGLSIVSEDINSV---------GGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL  699 (766)
Q Consensus       634 l~DFGla~~~~~~~~~---------~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~  699 (766)
                      |+|||++.........         .++.  ..|..   ....+.++|||||||++|||+||+.||.......... ...
T Consensus       162 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~~  240 (303)
T 2vwi_A          162 IADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM-LTL  240 (303)
T ss_dssp             ECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHH-HHH
T ss_pred             EEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHH-HHh
Confidence            9999998654321100         0000  01110   1245678999999999999999999987543221111 111


Q ss_pred             hcc-c-CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          700 NSQ-E-GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       700 ~~~-~-~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ... . ......++......+    ..+.+++.+||+.||.+||++.||++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          241 QNDPPSLETGVQDKEMLKKYG----KSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             TSSCCCTTC-----CCCCCCC----HHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             ccCCCccccccccchhhhhhh----HHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            100 0 011111122222222    236789999999999999999999863

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.7e-34  Score=327.04  Aligned_cols=245  Identities=17%  Similarity=0.233  Sum_probs=182.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-------------hhHHHHHHHHHHHHhCCCCCcccccce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-------------YTVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------------~~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      .+.|.+.+.||+|+||+||+|+.. +++.||||+++....             ...+.+.+|+.++++++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            467999999999999999999964 688999999875421             235678999999999999999999999


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      |.+..        ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+|||++
T Consensus       115 ~~~~~--------~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~  180 (504)
T 3q5i_A          115 FEDKK--------YFYLVTEFYEGGELFEQIINRH---KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLE  180 (504)
T ss_dssp             EECSS--------EEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEES
T ss_pred             EEcCC--------EEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEe
Confidence            98753        7899999999999999887653   389999999999999999999997   899999999999998


Q ss_pred             CCC---cEEEecCCCCcccccccccccCCCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          628 EHR---IAKLSDYGLSIVSEDINSVGGKQEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       628 ~~~---~~kl~DFGla~~~~~~~~~~~~~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      .++   .+||+|||++...............+.+      ...++.++||||+||++|||++|..||.....  ......
T Consensus       181 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~  258 (504)
T 3q5i_A          181 NKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QDIIKK  258 (504)
T ss_dssp             STTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH
T ss_pred             cCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHH
Confidence            765   6999999999765432211111111111      12356788999999999999999999974332  222222


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +....  .....+. ....+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       259 i~~~~--~~~~~~~-~~~~s----~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          259 VEKGK--YYFDFND-WKNIS----DEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             HHHCC--CCCCHHH-HTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHcCC--CCCCccc-cCCCC----HHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            22111  1110010 11111    237789999999999999999999864

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.5e-34  Score=303.76  Aligned_cols=241  Identities=17%  Similarity=0.303  Sum_probs=184.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||.+....   ....+.+.+|++++++++||||+++++++.+.+     
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   87 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK-----   87 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS-----
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCC-----
Confidence            357888999999999999999865 68899999986432   223567899999999999999999999998753     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        88 ---~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Df  158 (284)
T 2vgo_A           88 ---RIYLMLEFAPRGELYKELQKHG---RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADF  158 (284)
T ss_dssp             ---EEEEEECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred             ---EEEEEEEeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecc
Confidence               7899999999999999997653   388999999999999999999997   8999999999999999999999999


Q ss_pred             CCCcccccccccc--cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          638 GLSIVSEDINSVG--GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       638 Gla~~~~~~~~~~--~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      |++..........  +.    .++......++.++|||||||++|||++|+.||......  .....+....  ..    
T Consensus       159 g~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~--~~----  230 (284)
T 2vgo_A          159 GWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--ETHRRIVNVD--LK----  230 (284)
T ss_dssp             TTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTC--CC----
T ss_pred             cccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--HHHHHHhccc--cC----
Confidence            9986543221111  00    011111133567899999999999999999998743321  1111111111  01    


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       .....+    ..+.+++.+|++.||.+||+++|+++.
T Consensus       231 -~~~~~~----~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          231 -FPPFLS----DGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             -CCTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             -CCCcCC----HHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence             111111    236789999999999999999999864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.1e-34  Score=327.07  Aligned_cols=244  Identities=21%  Similarity=0.284  Sum_probs=180.7

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      +.|++.+.||+|+||+||+|+.. ++..||||++....  ....+.+.+|+.++++++|||||+++++|.+..       
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-------  109 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKR-------  109 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSS-------
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCC-------
Confidence            46888999999999999999964 68999999987543  233567899999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~D  636 (766)
                       ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+|||++.   ++.+||+|
T Consensus       110 -~~~lv~e~~~~g~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~D  182 (494)
T 3lij_A          110 -NYYLVMECYKGGELFDEIIHRM---KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVD  182 (494)
T ss_dssp             -EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             -EEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEE
Confidence             7899999999999999887653   388999999999999999999997   8999999999999976   45699999


Q ss_pred             CCCCcccccccccccCCCCCCc------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          637 YGLSIVSEDINSVGGKQEDPNS------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       637 FGla~~~~~~~~~~~~~~~~~~------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ||++...............+.+      ...++.++||||+||++|||++|..||.....  ......+...  ......
T Consensus       183 fG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~--~~~~~~  258 (494)
T 3lij_A          183 FGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD--QEILRKVEKG--KYTFDS  258 (494)
T ss_dssp             CTTCEECBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT--CCCCCS
T ss_pred             CCCCeECCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC--CCCCCc
Confidence            9999765432221111111110      12356789999999999999999999974332  2222222111  111111


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +.. ...+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       259 ~~~-~~~s----~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          259 PEW-KNVS----EGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             GGG-TTSC----HHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             hhc-ccCC----HHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            111 1112    236789999999999999999999854

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1e-34  Score=312.20  Aligned_cols=254  Identities=23%  Similarity=0.348  Sum_probs=181.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++....  ....+.+.+|+.++++++||||++++++|.+.+      
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~------   97 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK------   97 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT------
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCC------
Confidence            356888999999999999999965 58999999885433  334567889999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+++++|..++....   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        98 --~~~lv~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg  169 (331)
T 4aaa_A           98 --RWYLVFEFVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFG  169 (331)
T ss_dssp             --EEEEEEECCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             --EEEEEEecCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCC
Confidence              7899999999999988765433   389999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc----ccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhh---------
Q 004232          639 LSIVSEDINSV----GGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSL---------  699 (766)
Q Consensus       639 la~~~~~~~~~----~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~---------  699 (766)
                      ++.........    .++.  ..|..   ...++.++|||||||++|||+||+.||........ ..+...         
T Consensus       170 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  249 (331)
T 4aaa_A          170 FARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQ  249 (331)
T ss_dssp             TC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred             CceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhh
Confidence            99654321111    0110  01111   12356678999999999999999999875432111 000000         


Q ss_pred             ---hcccCccccccccccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          700 ---NSQEGRQRLVDPVVMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       700 ---~~~~~~~~~~d~~~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ...........+........     .....+.+++.+||+.||.+|||+.|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          250 ELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             HHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             hHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence               00000000111111111111     112347899999999999999999999864

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.1e-34  Score=311.68  Aligned_cols=254  Identities=16%  Similarity=0.197  Sum_probs=177.6

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      ...++|++.+.||+|+||+||+|+. .+++.||||+++....  ...+.+.+|++++++++||||+++++++.+..    
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----  106 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH----  106 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETT----
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCC----
Confidence            3457899999999999999999985 4789999999975432  23456789999999999999999999998763    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-----CCCc
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-----EHRI  631 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-----~~~~  631 (766)
                          ..++||||++ |+|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+|||++     .++.
T Consensus       107 ----~~~lv~e~~~-~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~  175 (329)
T 3gbz_A          107 ----RLHLIFEYAE-NDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPV  175 (329)
T ss_dssp             ----EEEEEEECCS-EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCE
T ss_pred             ----EEEEEEecCC-CCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccce
Confidence                7899999998 49999987653   388999999999999999999997   899999999999994     5556


Q ss_pred             EEEecCCCCccccccccc-----ccCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhc
Q 004232          632 AKLSDYGLSIVSEDINSV-----GGKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNS  701 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~-----~~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~  701 (766)
                      +||+|||++.........     ++.. ..|..   ...++.++|||||||++|||++|+.||........ ..+.....
T Consensus       176 ~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~  255 (329)
T 3gbz_A          176 LKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLG  255 (329)
T ss_dssp             EEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred             EEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhC
Confidence            999999998654321111     0100 11111   12356789999999999999999999875432111 11111000


Q ss_pred             ccCccc---------cc--cccccCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          702 QEGRQR---------LV--DPVVMATSSLE-----SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       702 ~~~~~~---------~~--d~~~~~~~~~~-----~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ......         ..  .+.........     ....+.+++.+|++.||.+|||++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          256 LPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             CCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            000000         00  00000000000     1134679999999999999999999875

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.2e-34  Score=312.73  Aligned_cols=255  Identities=18%  Similarity=0.293  Sum_probs=179.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .+.|+..+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|++++++++||||+++++++...+...  .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~--~  101 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD--D  101 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT--T
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccc--c
Confidence            35788899999999999999986 47999999998543  3344677899999999999999999999987653211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+ +++|.+++...    .+++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg  173 (367)
T 1cm8_A          102 FTDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFG  173 (367)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeee
Confidence            13579999999 88999998753    388999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc--ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc-cC-------
Q 004232          639 LSIVSEDINSV--GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ-EG-------  704 (766)
Q Consensus       639 la~~~~~~~~~--~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~-~~-------  704 (766)
                      +++........  ++.. ..|.   ....++.++||||+||++|||++|+.||......  ..+..+... +.       
T Consensus       174 ~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~l~~i~~~~g~~~~~~~~  251 (367)
T 1cm8_A          174 LARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL--DQLKEIMKVTGTPPAEFVQ  251 (367)
T ss_dssp             TCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHHHCCCCHHHHH
T ss_pred             cccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHhcCCCCHHHHH
Confidence            99765432111  1110 1111   1134677899999999999999999998743321  111111100 00       


Q ss_pred             -------------ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 -------------RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 -------------~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                   ........... ........+.+|+.+|++.||.+|||+.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          252 RLQSDEAKNYMKGLPELEKKDFAS-ILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCGGG-TCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhhhHHHHHHHHhCCCCCCCCHHH-HCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence                         00000000000 000112347789999999999999999998764

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.8e-34  Score=325.40  Aligned_cols=244  Identities=18%  Similarity=0.278  Sum_probs=183.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .+.|++.+.||+|+||+||+|+.. +++.||||++....  ....+.+.+|++++++++|||||++++++.+..      
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~------   94 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSS------   94 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS------
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCC------
Confidence            356889999999999999999864 78999999986432  234577899999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---~~~~~kl~  635 (766)
                        ..++||||+++|+|.+++.+..   .+++.....++.+++.||+|||+.   +|+||||||+|||++   .++.+||+
T Consensus        95 --~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~  166 (486)
T 3mwu_A           95 --SFYIVGELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKII  166 (486)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEEC
T ss_pred             --EEEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEE
Confidence              7899999999999999887653   388999999999999999999997   899999999999995   45679999


Q ss_pred             cCCCCccccccccc----c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          636 DYGLSIVSEDINSV----G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       636 DFGla~~~~~~~~~----~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      |||+++........    +   +..++.. ...++.++||||+||++|||++|+.||.....  ......+....  ...
T Consensus       167 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~--~~~  241 (486)
T 3mwu_A          167 DFGLSTCFQQNTKMKDRIGTAYYIAPEVL-RGTYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGK--YAF  241 (486)
T ss_dssp             SCSCTTTBCCC----CCTTGGGGCCGGGG-GSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC--CCS
T ss_pred             ECCcCeECCCCCccCCCcCCCCCCCHHHh-CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCC
Confidence            99999754332111    1   1111111 12355678999999999999999999864332  12222221111  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+.. ...+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       242 ~~~~~-~~~s----~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          242 DLPQW-RTIS----DDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             CSGGG-GGSC----HHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             CCccc-CCCC----HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            11111 1112    236789999999999999999999874

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=2.6e-34  Score=308.76  Aligned_cols=248  Identities=18%  Similarity=0.305  Sum_probs=179.8

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+. .+++.||||+++...   .+.+.+|++++++++ ||||+++++++.+...      .
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~------~  106 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVS------R  106 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTT------C
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCC------C
Confidence            6788999999999999999985 578999999987543   367889999999997 9999999999987432      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGl  639 (766)
                      ..++||||+++++|.+++..      +++..+..++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+
T Consensus       107 ~~~lv~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~  177 (330)
T 3nsz_A          107 TPALVFEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGL  177 (330)
T ss_dssp             CEEEEEECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             ceEEEEeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence            68999999999999998853      77889999999999999999997   899999999999999776 899999999


Q ss_pred             CcccccccccccCCC-----CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH--HhhhhcccCcccc-
Q 004232          640 SIVSEDINSVGGKQE-----DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE--LDSLNSQEGRQRL-  708 (766)
Q Consensus       640 a~~~~~~~~~~~~~~-----~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~--~~~~~~~~~~~~~-  708 (766)
                      ++.............     .|.   ....++.++|||||||++|||++|+.|+..........  +..........+. 
T Consensus       178 a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~  257 (330)
T 3nsz_A          178 AEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI  257 (330)
T ss_dssp             CEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHH
Confidence            975433221111110     111   11345678899999999999999999985432211100  0000000000000 


Q ss_pred             ------ccc----------------cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 ------VDP----------------VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ------~d~----------------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                            .++                .............+.+++.+|++.||.+|||++|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          258 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             HHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                  000                0000000001234788999999999999999999975

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.4e-34  Score=327.97  Aligned_cols=244  Identities=20%  Similarity=0.301  Sum_probs=185.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +.|++.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+.++++++|||||++++++.+.+      
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~------   99 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG------   99 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS------
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC------
Confidence            56888999999999999999865 78999999986432   334678999999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~  635 (766)
                        ..++||||+++|+|.+++....   .+++..+..++.+++.||+|||+.   +|+||||||+|||+   +.++.+||+
T Consensus       100 --~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~  171 (484)
T 3nyv_A          100 --YFYLVGEVYTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRII  171 (484)
T ss_dssp             --EEEEEECCCCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEEC
T ss_pred             --EEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEE
Confidence              7899999999999999887543   488999999999999999999997   89999999999999   467899999


Q ss_pred             cCCCCccccccccc----ccCCC-CCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          636 DYGLSIVSEDINSV----GGKQE-DPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       636 DFGla~~~~~~~~~----~~~~~-~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |||++.........    ++... .|. ....++.++||||+||++|||++|+.||......  .....+....  ....
T Consensus       172 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~--~~~~  247 (484)
T 3nyv_A          172 DFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILKKVEKGK--YTFE  247 (484)
T ss_dssp             CTTHHHHBCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC--CCCC
T ss_pred             eeeeeEEcccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCC--CCCC
Confidence            99998654332111    11000 110 0124567899999999999999999999754322  2222222111  1111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+.. ...+    ..+.+++.+|++.||.+|||+.|+++.
T Consensus       248 ~~~~-~~~s----~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          248 LPQW-KKVS----ESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             SGGG-GGSC----HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             Cccc-ccCC----HHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence            1111 1111    236789999999999999999999864

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=314.39  Aligned_cols=254  Identities=18%  Similarity=0.306  Sum_probs=182.6

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ++....++|++.+.||+|+||.||+|+...  .||||+++...  ....+.+.+|+.++++++||||+++++++.+.+  
T Consensus        27 ~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--  102 (319)
T 2y4i_B           27 EWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP--  102 (319)
T ss_dssp             GSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS--
T ss_pred             cccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--
Confidence            333345788999999999999999998753  59999986532  223456788999999999999999999998763  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            ..++||||+++|+|.+++.+..  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++ ++.+||
T Consensus       103 ------~~~iv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l  170 (319)
T 2y4i_B          103 ------HLAIITSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVI  170 (319)
T ss_dssp             ------CEEEECBCCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEE
T ss_pred             ------ceEEEeecccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEE
Confidence                  6899999999999999997643  3588999999999999999999997   899999999999998 679999


Q ss_pred             ecCCCCcccccccc------c----ccCC-CCCCc-----------ccCCCCCCCEeehhHHHHHHhcCCCccccCccch
Q 004232          635 SDYGLSIVSEDINS------V----GGKQ-EDPNS-----------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL  692 (766)
Q Consensus       635 ~DFGla~~~~~~~~------~----~~~~-~~~~~-----------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~  692 (766)
                      +|||++........      .    +... ..|..           ...++.++|||||||++|||+||+.||...... 
T Consensus       171 ~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-  249 (319)
T 2y4i_B          171 TDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE-  249 (319)
T ss_dssp             CCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH-
T ss_pred             eecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence            99999754321100      0    0000 01110           122455789999999999999999998743322 


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                       .....+.. ..........    .+    ..+.+++.+||+.||.+|||+.||+++|+.+....
T Consensus       250 -~~~~~~~~-~~~~~~~~~~----~~----~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          250 -AIIWQMGT-GMKPNLSQIG----MG----KEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             -HHHHHHHT-TCCCCCCCSS----CC----TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             -HHHHHhcc-CCCCCCCcCC----CC----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence             11111111 1111111111    11    12678999999999999999999999999876543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=3.8e-34  Score=302.79  Aligned_cols=245  Identities=19%  Similarity=0.256  Sum_probs=184.4

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---------hhhHHHHHHHHHHHHhCC-CCCcccccceee
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---------KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCI  549 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---------~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~  549 (766)
                      ..++|++.+.||+|+||.||+|+.. +|+.||||.++...         ....+.+.+|++++++++ ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            3567999999999999999999964 68999999986432         223567889999999996 999999999997


Q ss_pred             cCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      +.+        ..++||||+++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.+
T Consensus        95 ~~~--------~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~  160 (298)
T 1phk_A           95 TNT--------FFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDD  160 (298)
T ss_dssp             CSS--------EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTT
T ss_pred             cCC--------eEEEEEeccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCC
Confidence            653        7899999999999999997643   488999999999999999999997   89999999999999999


Q ss_pred             CcEEEecCCCCcccccccccccCCC-----CCC--------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH
Q 004232          630 RIAKLSDYGLSIVSEDINSVGGKQE-----DPN--------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL  696 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~  696 (766)
                      +.+||+|||++..............     .|.        ....++.++|||||||++|||++|+.|+......  ...
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~  238 (298)
T 1phk_A          161 MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--LML  238 (298)
T ss_dssp             CCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHH
T ss_pred             CcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH--HHH
Confidence            9999999999865432211111000     111        0123456889999999999999999998643321  111


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+....  .....+.. ...    ...+.+++.+||+.||.+||++.|+++
T Consensus       239 ~~~~~~~--~~~~~~~~-~~~----~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          239 RMIMSGN--YQFGSPEW-DDY----SDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             HHHHHTC--CCCCTTTG-GGS----CHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HHHhcCC--cccCcccc-ccc----CHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            1111111  11111111 111    123778999999999999999999975

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-34  Score=311.41  Aligned_cols=254  Identities=21%  Similarity=0.325  Sum_probs=176.7

Q ss_pred             HHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhh-----hHHHHHHHHHHHHhCCCCCcccccceeecCCC
Q 004232          480 EATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKY-----TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       480 ~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~  553 (766)
                      ...++|++.+.||+|+||.||+|+.. +|+.||||++......     ..+.+.+|++++++++||||+++++++.+.+ 
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-   85 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS-   85 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT-
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC-
Confidence            34567999999999999999999964 6899999999753221     1246789999999999999999999987653 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             ..++||||+++ +|..++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+|
T Consensus        86 -------~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~k  152 (346)
T 1ua2_A           86 -------NISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLK  152 (346)
T ss_dssp             -------CCEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred             -------ceEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEE
Confidence                   67999999996 8888886543  3478889999999999999999997   899999999999999999999


Q ss_pred             EecCCCCcccccccccc----cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhc---
Q 004232          634 LSDYGLSIVSEDINSVG----GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS---  701 (766)
Q Consensus       634 l~DFGla~~~~~~~~~~----~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~---  701 (766)
                      |+|||+++.........    ++.  ..|.   ....++.++|||||||++|||++|..|+......  ..+..+..   
T Consensus       153 l~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~--~~~~~i~~~~~  230 (346)
T 1ua2_A          153 LADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL--DQLTRIFETLG  230 (346)
T ss_dssp             ECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHHHC
T ss_pred             EEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHcC
Confidence            99999997653221111    010  0111   1122456789999999999999999988643321  11111111   


Q ss_pred             ccCcccc------ccccc---cCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 QEGRQRL------VDPVV---MATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ~~~~~~~------~d~~~---~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+      .+...   ....+.     .....+.+++.+|++.||.+|||+.|+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          231 TPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             CCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             CCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            0000000      00000   000000     111347899999999999999999999864

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=312.80  Aligned_cols=253  Identities=18%  Similarity=0.239  Sum_probs=178.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhh-HHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYT-VRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|.+.+.||+|+||.||+|+.. +++.||||++....... ...+.+|++++++++||||+++++++.+.+        
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--------   73 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK--------   73 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSS--------
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCC--------
Confidence            56888999999999999999965 78999999986543221 224567999999999999999999998753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++||||++ |+|.+++....  ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        74 ~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  147 (324)
T 3mtl_A           74 SLTLVFEYLD-KDLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLA  147 (324)
T ss_dssp             CEEEEEECCS-EEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEE
T ss_pred             EEEEEecccc-cCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCccc
Confidence            6899999998 59998887653  3588999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc-----ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCc---cc
Q 004232          641 IVSEDINSV-----GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGR---QR  707 (766)
Q Consensus       641 ~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~---~~  707 (766)
                      .........     ++.. ..|.   ....++.++|||||||++|||+||+.||....... ...+.........   ..
T Consensus       148 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  227 (324)
T 3mtl_A          148 RAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPG  227 (324)
T ss_dssp             ECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTT
T ss_pred             ccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchh
Confidence            654321111     0000 1111   11335678899999999999999999997543221 1111111110000   00


Q ss_pred             ccc---------ccccCCCC----HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVD---------PVVMATSS----LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d---------~~~~~~~~----~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...         +.......    ......+.+++.+|++.||.+|||++|+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          228 ILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             GGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            000         00000000    0011346789999999999999999999763

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=313.43  Aligned_cols=244  Identities=14%  Similarity=0.176  Sum_probs=182.2

Q ss_pred             HhcCCCcCCceecCCceeEEEEE------ecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC---CCCcccccceeecC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR---HPHLVCLLGHCIDG  551 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~---Hpniv~l~g~~~~~  551 (766)
                      ..++|.+.+.||+|+||+||+|.      ..+++.||||+++...   ..++.+|++++++++   |+||+++++++...
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~  139 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ  139 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence            34678889999999999999994      4568999999997653   356778888888887   99999999999876


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENT--PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-  628 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-  628 (766)
                      +        ..++||||+++|+|.+++....  ....++|..+..++.|++.||+|||+.   +|+||||||+|||++. 
T Consensus       140 ~--------~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~  208 (365)
T 3e7e_A          140 N--------GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNG  208 (365)
T ss_dssp             S--------CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGG
T ss_pred             C--------CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEeccc
Confidence            4        6899999999999999997421  234589999999999999999999997   8999999999999998 


Q ss_pred             ----------CCcEEEecCCCCcccccc---cccc---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          629 ----------HRIAKLSDYGLSIVSEDI---NSVG---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       629 ----------~~~~kl~DFGla~~~~~~---~~~~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                                ++.+||+|||+++.....   ....   ++.    ++......++.++|||||||++|||+||+.|+...
T Consensus       209 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          209 FLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             GTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             ccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence                      899999999999653211   1110   111    11111233567899999999999999999998532


Q ss_pred             ccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCC-CCHHHHHHHHHHHHh
Q 004232          689 GQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSR-PSFEDILWNLQYAAQ  755 (766)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~R-Ps~~ev~~~L~~~~~  755 (766)
                      ...             ... .+.........+   .+.+++.+|++.+|.+| |+++++.+.|+...+
T Consensus       289 ~~~-------------~~~-~~~~~~~~~~~~---~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~  339 (365)
T 3e7e_A          289 EGG-------------ECK-PEGLFRRLPHLD---MWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ  339 (365)
T ss_dssp             ETT-------------EEE-ECSCCTTCSSHH---HHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CCC-------------cee-echhccccCcHH---HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence            110             000 011111111222   35577889999999998 678888888887664

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=4.3e-34  Score=318.73  Aligned_cols=194  Identities=19%  Similarity=0.289  Sum_probs=153.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++...  .....+++.+|+++|++++|||||++++++...+..   .
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~---~  101 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLL---K  101 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTT---T
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCC---c
Confidence            36799999999999999999985 46889999999753  334567899999999999999999999998765311   1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....|+||||+. |+|.+++...   ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFG  174 (432)
T 3n9x_A          102 FDELYIVLEIAD-SDLKKLFKTP---IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFG  174 (432)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CCeEEEEEecCC-cCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCC
Confidence            236899999987 5999998754   3489999999999999999999998   89999999999999999999999999


Q ss_pred             CCcccccccc--------------------------cccCC-C-CCC---cccCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          639 LSIVSEDINS--------------------------VGGKQ-E-DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       639 la~~~~~~~~--------------------------~~~~~-~-~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      +++.......                          ..++. . .|.   ....++.++|||||||++|||++|..|+
T Consensus       175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence            9976432110                          00010 0 111   1234567889999999999999864443

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.1e-34  Score=305.19  Aligned_cols=234  Identities=16%  Similarity=0.268  Sum_probs=174.1

Q ss_pred             hcCCCcC-CceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHH-HhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMS-AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLL-AKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l-~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|.+. ++||+|+||.||+|+. .+++.||||+++..     ..+.+|+.++ +..+||||+++++++.....    .
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~----~   86 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYA----G   86 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEET----T
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcC----C
Confidence            3567666 7899999999999986 57899999998653     3466788887 56699999999999875210    0


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~  635 (766)
                      ....++||||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.   ++.+||+
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           87 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             EEEEEEEECCCCSCBHHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             CceEEEEEeecCCCcHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEe
Confidence            136899999999999999998653 23589999999999999999999997   8999999999999997   7899999


Q ss_pred             cCCCCcccccccccccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC--ccccccccc
Q 004232          636 DYGLSIVSEDINSVGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG--RQRLVDPVV  713 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~  713 (766)
                      |||++.....              ..++.++|||||||++|||+||+.||.......  ..........  ......+..
T Consensus       163 Dfg~a~~~~~--------------~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  226 (299)
T 3m2w_A          163 DFGFAKETTG--------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA--ISPGMKTRIRMGQYEFPNPEW  226 (299)
T ss_dssp             CCTTCEECTT--------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC---------CCSCCSSCTTCCSSCHHHH
T ss_pred             cccccccccc--------------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh--hhHHHHHHHhhccccCCchhc
Confidence            9999865321              223457899999999999999999986432111  0000000000  000000000


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ...    ...+.+++.+||+.||.+|||+.|+++.
T Consensus       227 -~~~----~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          227 -SEV----SEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             -TTS----CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -ccC----CHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence             111    2347789999999999999999999874

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=4e-34  Score=307.15  Aligned_cols=250  Identities=14%  Similarity=0.231  Sum_probs=183.3

Q ss_pred             HHHhcCCCcC-CceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCC-CCCcccccceeecCCC
Q 004232          479 KEATNNFDMS-AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGG  553 (766)
Q Consensus       479 ~~~~~~f~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~  553 (766)
                      ....+.|.+. +.||+|+||.||+|+.. +|+.||||+++...  ....+.+.+|+.++++++ ||||+++++++.+.+ 
T Consensus        24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~-  102 (327)
T 3lm5_A           24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS-  102 (327)
T ss_dssp             HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS-
T ss_pred             HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC-
Confidence            3444556666 88999999999999865 68999999987543  233678899999999995 699999999998753 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CC
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HR  630 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~  630 (766)
                             ..++||||+++|+|.+++.... ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.   ++
T Consensus       103 -------~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~  171 (327)
T 3lm5_A          103 -------EIILILEYAAGGEIFSLCLPEL-AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLG  171 (327)
T ss_dssp             -------EEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBC
T ss_pred             -------eEEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCC
Confidence                   7899999999999999986532 24589999999999999999999997   8999999999999997   78


Q ss_pred             cEEEecCCCCcccccccccc---c----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc
Q 004232          631 IAKLSDYGLSIVSEDINSVG---G----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~---~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      .+||+|||+++.........   +    ..++......++.++|||||||++|||+||+.||......  .....+....
T Consensus       172 ~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~  249 (327)
T 3lm5_A          172 DIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ--ETYLNISQVN  249 (327)
T ss_dssp             CEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTC
T ss_pred             cEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch--HHHHHHHhcc
Confidence            99999999997653322111   1    1111111234567899999999999999999998643321  1111111110


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        .....+. ....+    ..+.+++.+||+.||.+|||++|+++.
T Consensus       250 --~~~~~~~-~~~~~----~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          250 --VDYSEET-FSSVS----QLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             --CCCCTTT-TTTSC----HHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             --cccCchh-hcccC----HHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence              1111111 11111    236789999999999999999999754

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.7e-34  Score=317.02  Aligned_cols=263  Identities=15%  Similarity=0.225  Sum_probs=178.0

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC-
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD-  556 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~-  556 (766)
                      ....++|++.+.||+|+||+||+|+. .+|+.||||++.....    ...+|+++|++++|||||++++++...+.... 
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            34567899999999999999999985 5799999999865432    23479999999999999999999876432100 


Q ss_pred             -----------------------------cCcceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q 004232          557 -----------------------------YAVNKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFL  606 (766)
Q Consensus       557 -----------------------------~~~~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yL  606 (766)
                                                   ......++||||++ |+|.+.+... .....+++.....++.|+++||+||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  157 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI  157 (383)
T ss_dssp             -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                         01134889999999 5877766531 1224589999999999999999999


Q ss_pred             hcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCCccccccccccc---CC--CCCC---cccCCCCCCCEeehhHHHHH
Q 004232          607 HTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSIVSEDINSVGG---KQ--EDPN---SWEMTKLEDDVFSFGFMLLE  677 (766)
Q Consensus       607 H~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla~~~~~~~~~~~---~~--~~~~---~~~~~~~~~DV~SfGvil~E  677 (766)
                      |+.   +|+||||||+||+++ .++.+||+|||+++..........   +.  ..|.   ....++.++|||||||++||
T Consensus       158 H~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e  234 (383)
T 3eb0_A          158 HSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGE  234 (383)
T ss_dssp             HTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred             HHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHH
Confidence            997   899999999999998 688999999999975432221111   11  0111   11235678899999999999


Q ss_pred             HhcCCCccccCccch-HHHHhhhhccc----------CccccccccccCC-----CCHHHHHHHHHHHHHhccCCCCCCC
Q 004232          678 SVAGPSVAARKGQFL-QEELDSLNSQE----------GRQRLVDPVVMAT-----SSLESLSIVISIANKCICSESWSRP  741 (766)
Q Consensus       678 lltG~~p~~~~~~~~-~~~~~~~~~~~----------~~~~~~d~~~~~~-----~~~~~~~~~~~l~~~C~~~~p~~RP  741 (766)
                      |++|+.||....... ...+.......          ...++.-+.....     .+......+.+|+.+||+.||.+||
T Consensus       235 ll~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  314 (383)
T 3eb0_A          235 LILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRI  314 (383)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSC
T ss_pred             HHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCC
Confidence            999999987533211 11111100000          0000000100000     0001123478999999999999999


Q ss_pred             CHHHHHHH
Q 004232          742 SFEDILWN  749 (766)
Q Consensus       742 s~~ev~~~  749 (766)
                      |+.|+++.
T Consensus       315 t~~e~l~h  322 (383)
T 3eb0_A          315 NPYEAMAH  322 (383)
T ss_dssp             CHHHHHTS
T ss_pred             CHHHHhcC
Confidence            99999853

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=4e-35  Score=320.61  Aligned_cols=255  Identities=9%  Similarity=0.020  Sum_probs=165.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHH---HHHhCCCCCccccc-------ce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLD---LLAKLRHPHLVCLL-------GH  547 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~---~l~~l~Hpniv~l~-------g~  547 (766)
                      ..+|.+.+.||+|+||.||+|+.. +|+.||||++....   ....+.+.+|+.   +|+. +||||++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            345888999999999999999964 78999999997643   234566778854   5555 799988755       33


Q ss_pred             eecCCCCC---------CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHH------HHHHHHHHHHHHHHhcCCCC
Q 004232          548 CIDGGGRD---------DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER------LAVLIGVAKAVQFLHTGVIP  612 (766)
Q Consensus       548 ~~~~~~~~---------~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~~~  612 (766)
                      +..++...         .......++||||++ |+|.+++.....  .+.+..+      ..++.||+.||+|||+.   
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---  213 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQSK---  213 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---
Confidence            33322100         001135899999999 899999976421  2345555      78889999999999997   


Q ss_pred             CcccCCCCCCceEEcCCCcEEEecCCCCccccccc-ccccCC--CCCC--cc--cCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          613 GFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN-SVGGKQ--EDPN--SW--EMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       613 ~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~-~~~~~~--~~~~--~~--~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      +|+||||||+|||++.++.+||+|||+++...... ....+.  ..|.  ..  ..++.++|||||||++|||+||+.||
T Consensus       214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf  293 (371)
T 3q60_A          214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPF  293 (371)
T ss_dssp             TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCST
T ss_pred             CCccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCC
Confidence            89999999999999999999999999997654332 111111  1111  11  23566889999999999999999998


Q ss_pred             ccCccchHHHHhhhhcc-cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          686 ARKGQFLQEELDSLNSQ-EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       686 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..........+...... ........+.. ...    ...+.+++.+||+.||++|||+.|+++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          294 GLVTPGIKGSWKRPSLRVPGTDSLAFGSC-TPL----PDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TBCCTTCTTCCCBCCTTSCCCCSCCCTTS-SCC----CHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             CCcCcccccchhhhhhhhccccccchhhc-cCC----CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            75322111100000000 00001111110 111    234778999999999999999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=4e-34  Score=321.64  Aligned_cols=255  Identities=15%  Similarity=0.202  Sum_probs=183.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||.||+|+. .+++.||||++.....  .+++.+|+++++.++|++.+..+.++...+       .
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~-------~   76 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEG-------D   76 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEET-------T
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeC-------C
Confidence            36789999999999999999985 5799999998765432  235788999999998866555554443332       3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE---cCCCcEEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL---NEHRIAKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl---d~~~~~kl~DF  637 (766)
                      ..++||||+ +|+|.+++....  ..+++..++.++.||+.||+|||+.   +|+||||||+|||+   +.++.+||+||
T Consensus        77 ~~~lvme~~-g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DF  150 (483)
T 3sv0_A           77 YNVLVMDLL-GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDF  150 (483)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred             EEEEEEECC-CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeC
Confidence            689999999 999999997533  3489999999999999999999997   89999999999999   68899999999


Q ss_pred             CCCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhc
Q 004232          638 GLSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNS  701 (766)
Q Consensus       638 Gla~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~  701 (766)
                      |+++.........        .....+.       ....++.++|||||||++|||++|+.||...... ....+..+..
T Consensus       151 Gla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~  230 (483)
T 3sv0_A          151 GLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISE  230 (483)
T ss_dssp             TTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHH
T ss_pred             CcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhh
Confidence            9997654322110        0000110       1123455789999999999999999998753221 1111211111


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      .. .....+. +....+    ..+.+++.+||+.||.+||++.+|+++|+.+...+
T Consensus       231 ~~-~~~~~~~-l~~~~p----~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~  280 (483)
T 3sv0_A          231 KK-VATSIEA-LCRGYP----TEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE  280 (483)
T ss_dssp             HH-HHSCHHH-HHTTSC----HHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cc-ccccHHH-HhcCCc----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence            10 0000000 001111    24788999999999999999999999999886543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-34  Score=314.64  Aligned_cols=244  Identities=22%  Similarity=0.322  Sum_probs=181.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhC-CCCCcccccceeecCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGG  552 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~  552 (766)
                      .++|++.+.||+|+||.||+|+.    .+|+.||||+++...    ....+.+.+|+++++++ +||||+++++++.+.+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            46789999999999999999986    478999999986532    22345677899999999 6999999999988753


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcE
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIA  632 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~  632 (766)
                              ..++||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+
T Consensus       133 --------~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~  198 (355)
T 1vzo_A          133 --------KLHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHV  198 (355)
T ss_dssp             --------EEEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred             --------eEEEEeecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcE
Confidence                    6899999999999999997653   388999999999999999999997   89999999999999999999


Q ss_pred             EEecCCCCccccccccc-----ccCC-C-CCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCcc--chHHHHhhh
Q 004232          633 KLSDYGLSIVSEDINSV-----GGKQ-E-DPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQ--FLQEELDSL  699 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~-----~~~~-~-~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~--~~~~~~~~~  699 (766)
                      ||+|||+++........     .++. . .|...    ..++.++|||||||++|||+||+.||.....  ........+
T Consensus       199 kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~  278 (355)
T 1vzo_A          199 VLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRI  278 (355)
T ss_dssp             EESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHH
T ss_pred             EEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHH
Confidence            99999998654221110     1111 0 11111    2245678999999999999999999864321  111111111


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHHHH
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRP-----SFEDILWNL  750 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~~L  750 (766)
                      ...  .     +......+    ..+.+++.+||+.||.+||     +++|+++..
T Consensus       279 ~~~--~-----~~~~~~~~----~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          279 LKS--E-----PPYPQEMS----ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             HHC--C-----CCCCTTSC----HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             hcc--C-----CCCCcccC----HHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence            110  0     11111111    2367899999999999999     899987653

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.7e-34  Score=301.53  Aligned_cols=247  Identities=19%  Similarity=0.302  Sum_probs=171.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||+++...  ....+.+.++...++.++||||+++++++.+.+      
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~------   79 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG------   79 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS------
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC------
Confidence            46788899999999999999996 578999999997542  222344455555688899999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        ..++||||++ |+|.+++... .....+++..+..++.|++.||+|||+.  .+|+||||||+||+++.++.+||+||
T Consensus        80 --~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Df  154 (290)
T 3fme_A           80 --DVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDF  154 (290)
T ss_dssp             --SEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC
T ss_pred             --CEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeec
Confidence              6899999998 5887776541 1234589999999999999999999985  27999999999999999999999999


Q ss_pred             CCCcccccccccc---cCC--CCCC------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          638 GLSIVSEDINSVG---GKQ--EDPN------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       638 Gla~~~~~~~~~~---~~~--~~~~------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |++..........   ++.  ..|.      ....++.++|||||||++|||+||+.|+......... +....... ..
T Consensus       155 g~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~~-~~  232 (290)
T 3fme_A          155 GISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQ-LKQVVEEP-SP  232 (290)
T ss_dssp             ---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHH-HHHHHHSC-CC
T ss_pred             CCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHH-HHHHhccC-CC
Confidence            9986543321111   111  0111      1123455789999999999999999998743322211 11111111 11


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ....    ...+    ..+.+++.+||+.||.+|||+.||++.
T Consensus       233 ~~~~----~~~~----~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          233 QLPA----DKFS----AEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             CCCT----TTSC----HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             Cccc----ccCC----HHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            1111    0111    236789999999999999999999873

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.6e-34  Score=307.83  Aligned_cols=242  Identities=22%  Similarity=0.338  Sum_probs=178.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh--------hhHHHHHHHHHHHHhCCCCCcccccceeecCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK--------YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGG  552 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~  552 (766)
                      .++|.+.+.||+|+||.||+|+.. +++.||||.+.....        .....+.+|++++++++||||+++++++... 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-   87 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-   87 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-
Confidence            356889999999999999999864 688999999865321        2234588999999999999999999998653 


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC--
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR--  630 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~--  630 (766)
                              ..++||||+++|+|.+++...   ..+++.....++.+++.||+|||+.   +|+||||||+||+++.++  
T Consensus        88 --------~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~  153 (322)
T 2ycf_A           88 --------DYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEED  153 (322)
T ss_dssp             --------SEEEEEECCTTEETHHHHSTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSS
T ss_pred             --------ceEEEEecCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCC
Confidence                    479999999999999988654   3488999999999999999999997   899999999999998765  


Q ss_pred             -cEEEecCCCCccccccccc----ccCC-CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCcc--chHHHHh
Q 004232          631 -IAKLSDYGLSIVSEDINSV----GGKQ-EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ--FLQEELD  697 (766)
Q Consensus       631 -~~kl~DFGla~~~~~~~~~----~~~~-~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~--~~~~~~~  697 (766)
                       .+||+|||++.........    +... ..|..     ...++.++|||||||++|||++|..||.....  .....+.
T Consensus       154 ~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~  233 (322)
T 2ycf_A          154 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT  233 (322)
T ss_dssp             CCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHH
T ss_pred             CeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Confidence             4999999999765432110    1111 11111     23456689999999999999999999864322  1111111


Q ss_pred             hhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       698 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .    ... .. .+......+    ..+.+++.+||+.||.+||++.|+++
T Consensus       234 ~----~~~-~~-~~~~~~~~~----~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          234 S----GKY-NF-IPEVWAEVS----EKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             H----TCC-CC-CHHHHTTSC----HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             h----Ccc-cc-CchhhhhcC----HHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            1    100 00 011111111    24678999999999999999999984

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=6.3e-34  Score=323.13  Aligned_cols=239  Identities=19%  Similarity=0.258  Sum_probs=181.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh---hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|.+.++||+|+||.||+|+.. +|+.||||++.....   ...+.+.+|+.++++++||||+++++++.+..      
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~------  258 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT------  258 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS------
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCC------
Confidence            67888899999999999999974 699999999965432   23567889999999999999999999988753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTP-GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                        .+|+||||+++|+|.+++..... ...+++.....++.||+.||+|||+.   +|+||||||+|||++.++++||+||
T Consensus       259 --~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DF  333 (543)
T 3c4z_A          259 --DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDL  333 (543)
T ss_dssp             --EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred             --EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeec
Confidence              78999999999999999876432 23588999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc----ccCCCC--C--CcccCCCCCCCEeehhHHHHHHhcCCCccccCcc--chHHHHhhhhcccCccc
Q 004232          638 GLSIVSEDINSV----GGKQED--P--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ--FLQEELDSLNSQEGRQR  707 (766)
Q Consensus       638 Gla~~~~~~~~~----~~~~~~--~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~--~~~~~~~~~~~~~~~~~  707 (766)
                      |+++........    .++..+  |  .....++.++|||||||++|||+||+.||.....  ........+...  ...
T Consensus       334 Gla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~--~~~  411 (543)
T 3c4z_A          334 GLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ--AVT  411 (543)
T ss_dssp             TTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC--CCC
T ss_pred             ceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc--ccC
Confidence            999765332211    111110  1  1113456788999999999999999999975321  111111111111  111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      +  |   ...+    ..+.+++.+|++.||.+||++
T Consensus       412 ~--p---~~~s----~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          412 Y--P---DKFS----PASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             C--C---TTSC----HHHHHHHHHHSCSSGGGSCCC
T ss_pred             C--C---cccC----HHHHHHHHHhccCCHhHCCCC
Confidence            1  1   1111    236789999999999999976

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=307.65  Aligned_cols=258  Identities=22%  Similarity=0.372  Sum_probs=186.4

Q ss_pred             CHHHHHHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          474 TLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       474 ~~~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      +++++....++|++.+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+.+++++ +||||+++++++...
T Consensus        15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   93 (326)
T 2x7f_A           15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKK   93 (326)
T ss_dssp             -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred             cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence            3344455678899999999999999999996 4789999999865432 346788999999999 799999999999874


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      ...  ......++||||+++|+|.+++.... ...+++.....++.+++.||+|||+.   +|+||||||+||+++.++.
T Consensus        94 ~~~--~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~  167 (326)
T 2x7f_A           94 NPP--GMDDQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAE  167 (326)
T ss_dssp             C----CCCCEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCC
T ss_pred             cCc--cccceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCC
Confidence            210  00146899999999999999997643 23488999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccc-----ccCC-CCCCc-------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          632 AKLSDYGLSIVSEDINSV-----GGKQ-EDPNS-------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~-----~~~~-~~~~~-------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      +||+|||++.........     +... ..|..       ...++.++|||||||++|||+||+.|+......  .....
T Consensus       168 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~  245 (326)
T 2x7f_A          168 VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--RALFL  245 (326)
T ss_dssp             EEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHH
T ss_pred             EEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHH
Confidence            999999998654321110     1000 01110       234567899999999999999999998643321  11111


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +... .......    ...+    ..+.+++.+||+.||.+||++.|+++.
T Consensus       246 ~~~~-~~~~~~~----~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          246 IPRN-PAPRLKS----KKWS----KKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             HHHS-CCCCCSC----SCSC----HHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hhcC-ccccCCc----cccC----HHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            1111 1111111    1111    236788999999999999999999873

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=3.1e-34  Score=310.57  Aligned_cols=253  Identities=17%  Similarity=0.236  Sum_probs=183.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhh-----------------HHHHHHHHHHHHhCCCCCcccc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYT-----------------VRNLKLRLDLLAKLRHPHLVCL  544 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-----------------~~~~~~e~~~l~~l~Hpniv~l  544 (766)
                      .++|++.+.||+|+||.||+|+. +|+.||||++.......                 .+.+.+|++++++++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46799999999999999999998 89999999986432211                 2789999999999999999999


Q ss_pred             cceeecCCCCCCcCcceEEEEEEccCCCChhhh------hhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCCCcccC
Q 004232          545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTH------ISENTPGKVLNWSERLAVLIGVAKAVQFLHT-GVIPGFFNN  617 (766)
Q Consensus       545 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~------l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHr  617 (766)
                      ++++.+.+        ..++||||+++|+|.++      +.+.. ...+++..+..++.+++.||+|||+ .   +|+||
T Consensus       109 ~~~~~~~~--------~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~  176 (348)
T 2pml_X          109 EGIITNYD--------EVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHR  176 (348)
T ss_dssp             SEEEESSS--------EEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECC
T ss_pred             EEEEeeCC--------eEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeec
Confidence            99998753        78999999999999998      54321 3458999999999999999999998 6   89999


Q ss_pred             CCCCCceEEcCCCcEEEecCCCCcccccccccc--cC--CCCCCccc---CCCC-CCCEeehhHHHHHHhcCCCccccCc
Q 004232          618 RVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG--GK--QEDPNSWE---MTKL-EDDVFSFGFMLLESVAGPSVAARKG  689 (766)
Q Consensus       618 dlk~~NILld~~~~~kl~DFGla~~~~~~~~~~--~~--~~~~~~~~---~~~~-~~DV~SfGvil~ElltG~~p~~~~~  689 (766)
                      ||||+||+++.++.+||+|||++..........  ++  ...|....   .+.. ++|||||||++|||+||+.|+....
T Consensus       177 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  256 (348)
T 2pml_X          177 DVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI  256 (348)
T ss_dssp             CCCGGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCChHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999996643221110  00  01111111   1223 7899999999999999999987433


Q ss_pred             cchHHHHhhhhcccCc-c----ccccccccC---CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          690 QFLQEELDSLNSQEGR-Q----RLVDPVVMA---TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       690 ~~~~~~~~~~~~~~~~-~----~~~d~~~~~---~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .. ......+...... .    ....+....   .........+.+++.+||+.||.+||++.|+++
T Consensus       257 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          257 SL-VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             CS-HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cH-HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            21 1112222111100 0    000000000   000111234778999999999999999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=301.51  Aligned_cols=243  Identities=22%  Similarity=0.341  Sum_probs=179.1

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..+.|++.+.||+|+||.||+|+.. +|+.||||.+....  ..+.+.+|+.++++++||||+++++++.+.+       
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-------   97 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT-------   97 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT-------
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC-------
Confidence            4567999999999999999999865 58999999987543  3467889999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++....  ..+++..+..++.+++.||+|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        98 -~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~  171 (314)
T 3com_A           98 -DLWIVMEYCGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGV  171 (314)
T ss_dssp             -EEEEEEECCTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             -EEEEEeecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeeccc
Confidence             6899999999999999986432  3488999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccccc----C----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          640 SIVSEDINSVGG----K----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       640 a~~~~~~~~~~~----~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +...........    +    .++......++.++|||||||++|||++|+.|+......  .....+.. ........+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~-~~~~~~~~~  248 (314)
T 3com_A          172 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM--RAIFMIPT-NPPPTFRKP  248 (314)
T ss_dssp             CEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHH-SCCCCCSSG
T ss_pred             chhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHhc-CCCcccCCc
Confidence            865433211100    0    011011123567899999999999999999998643321  11111111 111111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..   .+    ..+.+++.+||+.||.+||++.|+++
T Consensus       249 ~~---~~----~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          249 EL---WS----DNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             GG---SC----HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             cc---CC----HHHHHHHHHHccCChhhCcCHHHHHh
Confidence            11   11    23678999999999999999999976

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.9e-33  Score=307.34  Aligned_cols=255  Identities=18%  Similarity=0.242  Sum_probs=180.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+. .+++.||||++...  .....+.+.+|+.++++++||||+++++++...+...  .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~--~  101 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLE--E  101 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTT--T
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccc--c
Confidence            36788999999999999999985 46899999998653  3344677889999999999999999999987653211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+++ +|.+.+..     .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       102 ~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg  172 (371)
T 2xrw_A          102 FQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  172 (371)
T ss_dssp             CCEEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ccceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEee
Confidence            1368999999985 78887752     278999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc----cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC-------
Q 004232          639 LSIVSEDINSV----GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG-------  704 (766)
Q Consensus       639 la~~~~~~~~~----~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~-------  704 (766)
                      +++........    ++   ..++......++.++|||||||++|||+||+.||......  ..+..+.....       
T Consensus       173 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~  250 (371)
T 2xrw_A          173 LARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI--DQWNKVIEQLGTPCPEFM  250 (371)
T ss_dssp             C----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHC-CCCCCHHHH
T ss_pred             cccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHHH
Confidence            99754332111    11   1111111234567899999999999999999998743321  11111111000       


Q ss_pred             -------------ccc--------cccccccCCCC---HHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 -------------RQR--------LVDPVVMATSS---LESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 -------------~~~--------~~d~~~~~~~~---~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                   ...        .......+...   ......+.+|+.+|++.||.+|||++|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                         000        00000000001   1123568899999999999999999999875

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.9e-34  Score=317.69  Aligned_cols=258  Identities=16%  Similarity=0.229  Sum_probs=177.0

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+|.+.++||+|+||+||+|+...+..||+|++.....    ...+|+++++.++|||||++++++...+...  .....
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~--~~~~~  113 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKK--DEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSS--SCEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCC--CceEE
Confidence            45888999999999999999987777799998865432    2246899999999999999999987654211  11347


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla~  641 (766)
                      ++||||++++.+............+++.....++.|+++||+|||+.   +|+||||||+|||++ .++.+||+|||+++
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            89999999865544332221224588999999999999999999997   899999999999999 79999999999997


Q ss_pred             ccccccccc---cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhccc---------
Q 004232          642 VSEDINSVG---GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQE---------  703 (766)
Q Consensus       642 ~~~~~~~~~---~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~---------  703 (766)
                      .........   ++.  ..|.   ....++.++|||||||++|||++|+.||....... ...+.......         
T Consensus       191 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~  270 (394)
T 4e7w_A          191 ILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMN  270 (394)
T ss_dssp             ECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             cccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhC
Confidence            643221111   110  0111   11235678899999999999999999997543211 11111110000         


Q ss_pred             -CccccccccccCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 -GRQRLVDPVVMATS-----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 -~~~~~~d~~~~~~~-----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                       ......-+......     .......+.+|+.+||+.||.+|||+.|+++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence             00000000000000     00012347899999999999999999999764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=6.4e-34  Score=310.19  Aligned_cols=258  Identities=17%  Similarity=0.312  Sum_probs=169.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++...  .....+.+.+|+.++++++||||+++++++.......  .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~--~  105 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE--E  105 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG--G
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccc--c
Confidence            36788899999999999999984 57899999999653  3345678889999999999999999999987642111  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++|+||+ +++|.+++..    ..+++..+..++.||++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       106 ~~~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG  177 (367)
T 2fst_X          106 FNDVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFG  177 (367)
T ss_dssp             CCCCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC--
T ss_pred             CCeEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecc
Confidence            13579999999 6899988864    2489999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc--cccCCC-CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccC---cccc
Q 004232          639 LSIVSEDINS--VGGKQE-DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEG---RQRL  708 (766)
Q Consensus       639 la~~~~~~~~--~~~~~~-~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~---~~~~  708 (766)
                      +++.......  .++... .|.   ....++.++|||||||++|||+||+.||....... ...+........   ...+
T Consensus       178 ~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~  257 (367)
T 2fst_X          178 LARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI  257 (367)
T ss_dssp             -------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTC
T ss_pred             ccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9976433211  111110 111   11346678999999999999999999987433211 111111100000   0000


Q ss_pred             c--------ccc-ccCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 V--------DPV-VMATSSLE-----SLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~--------d~~-~~~~~~~~-----~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .        ... ........     .-..+.+|+.+|++.||.+|||+.|+++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          258 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            0        000 00000000     11347899999999999999999999764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-33  Score=313.59  Aligned_cols=268  Identities=22%  Similarity=0.261  Sum_probs=179.0

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccC-CccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSL-PDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      ++.|...+..|..++++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus        37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred             ecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence            4444444444556666666666666666665444 345666666666666666666666666666666666666666666


Q ss_pred             CCCCcc--cCCCCCCCEEEccCccCCCCCCcc-ccCCCCCCEEEccCCccCCCCCC-C----------------------
Q 004232          180 NTIPNW--FDSLPSLTFLSMRNNKLAGPFPSS-IQRISTLSDLDLSKNAISGSLPD-L----------------------  233 (766)
Q Consensus       180 ~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~-~----------------------  233 (766)
                      +.+|..  |+++++|++|+|++|++++..|.. +.++++|++|+|++|.+++..|. +                      
T Consensus       117 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~  196 (455)
T 3v47_A          117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN  196 (455)
T ss_dssp             THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred             ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence            544433  666666666666666666655554 56666666666666666654442 1                      


Q ss_pred             ------------CCCCCCCEEECCCCCCCCCCCC------------------------------------------CCCC
Q 004232          234 ------------SSLGSLNVLNLSDNKLDSNLPK------------------------------------------LPRG  259 (766)
Q Consensus       234 ------------~~l~~L~~L~ls~N~l~~~~p~------------------------------------------~~~~  259 (766)
                                  ..+++|++|++++|++++..|.                                          ....
T Consensus       197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
T 3v47_A          197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG  276 (455)
T ss_dssp             TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred             hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence                        1335677777777766532110                                          0135


Q ss_pred             CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          260 LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      ++.+++++|++++.+|..|+.+++|+.|++++|++++.+|..|..+++|+.|+|++|++++..|..+..+++|+.|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            77777777777777777777788888888888888877777777778888888888887777677777777788888888


Q ss_pred             CccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          340 NKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       340 N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      |++++..|..+..+++|+.|++++|.+++
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CcccccChhhccccccccEEECCCCcccc
Confidence            88877777777777778888888877775

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=6.9e-34  Score=315.82  Aligned_cols=257  Identities=17%  Similarity=0.215  Sum_probs=176.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .+|++.+.||+|+||+||+|+.. +|+.||||++.....    ...+|+++|++++|||||+++++|...+...  ....
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~--~~~~  127 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKK--DEVY  127 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTT--TEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCC--ccee
Confidence            35888899999999999999974 699999999865432    2347999999999999999999986543111  1124


Q ss_pred             EEEEEEccCCCChhhhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC-CcEEEecCCC
Q 004232          562 VFLVYEFMSNGNFRTHISEN-TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGL  639 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~-~~~kl~DFGl  639 (766)
                      +++||||+++ ++.+.+... .....+++.....++.||++||+|||+.   +|+||||||+|||++.+ +.+||+|||+
T Consensus       128 ~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~  203 (420)
T 1j1b_A          128 LNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGS  203 (420)
T ss_dssp             EEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchh
Confidence            6799999996 565554321 1224589999999999999999999997   89999999999999955 6789999999


Q ss_pred             Cccccccccc---ccCC-C-CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhcc--------
Q 004232          640 SIVSEDINSV---GGKQ-E-DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNSQ--------  702 (766)
Q Consensus       640 a~~~~~~~~~---~~~~-~-~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~~--------  702 (766)
                      ++........   .++. . .|.   ....++.++|||||||++|||++|+.||...... ....+......        
T Consensus       204 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~  283 (420)
T 1j1b_A          204 AKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE  283 (420)
T ss_dssp             CEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             hhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence            9754322111   1111 0 111   1124567889999999999999999999753321 11111110000        


Q ss_pred             --cCccccccccccCCC-----CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 --EGRQRLVDPVVMATS-----SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 --~~~~~~~d~~~~~~~-----~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ....++..+.+....     .......+.+|+.+||+.||.+||++.|+++.
T Consensus       284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence              001111111111000     00112347899999999999999999999754

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=6.5e-34  Score=309.58  Aligned_cols=268  Identities=18%  Similarity=0.211  Sum_probs=173.5

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      ++.....++|++.+.||+|+||.||+|+.. +|+.||||++..... ....+.+|++.++.++||||+++++++...+..
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            445667889999999999999999999964 689999998865432 224556778888999999999999999764321


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhc-CCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCCCCcccCCCCCCceEEcC-CC
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISE-NTPGKVLNWSERLAVLIGVAKAVQFLH--TGVIPGFFNNRVKTNNILLNE-HR  630 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH--~~~~~~ivHrdlk~~NILld~-~~  630 (766)
                      + ......++||||++++ +...+.. ......+++.....++.+++.||.|||  +.   +|+||||||+|||++. ++
T Consensus        95 ~-~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~  169 (360)
T 3e3p_A           95 D-RRDIYLNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADG  169 (360)
T ss_dssp             C-TTCEEEEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTT
T ss_pred             c-ccceeEEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCC
Confidence            1 0112478999999974 4433322 122345788999999999999999999  65   8999999999999996 89


Q ss_pred             cEEEecCCCCccccccccccc---CC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhc
Q 004232          631 IAKLSDYGLSIVSEDINSVGG---KQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNS  701 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~~~~---~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~  701 (766)
                      .+||+|||++...........   +.  ..|.   ....++.++|||||||++|||+||+.||....... ...+.....
T Consensus       170 ~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~  249 (360)
T 3e3p_A          170 TLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLG  249 (360)
T ss_dssp             EEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred             cEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcC
Confidence            999999999976543221111   10  0111   11235678899999999999999999987543211 111111000


Q ss_pred             c------------cCcccccccc------ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          702 Q------------EGRQRLVDPV------VMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       702 ~------------~~~~~~~d~~------~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .            .......+..      ............+.+|+.+||+.||.+|||+.||++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          250 CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            0            0000000000      0000011123457899999999999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=297.75  Aligned_cols=244  Identities=19%  Similarity=0.278  Sum_probs=180.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||.||+|.. .+++.||||.++...    ....+.+.+|++++++++||||+++++++...+.   
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~---   80 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEK---   80 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-----
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCC---
Confidence            46899999999999999999986 468899999987543    2345789999999999999999999999864321   


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                         ...++||||+++| +.+++.... ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        81 ---~~~~lv~e~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~d  152 (305)
T 2wtk_C           81 ---QKMYMVMEYCVCG-MQEMLDSVP-EKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISA  152 (305)
T ss_dssp             ----CEEEEEECCSEE-HHHHHHHST-TCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred             ---CeEEEEehhccCC-HHHHHHhCc-ccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeec
Confidence               3689999999987 767665543 24589999999999999999999997   899999999999999999999999


Q ss_pred             CCCCccccccccc---ccCCC-----CCCccc----CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          637 YGLSIVSEDINSV---GGKQE-----DPNSWE----MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       637 FGla~~~~~~~~~---~~~~~-----~~~~~~----~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      ||++.........   .....     .|....    ..+.++|||||||++|||++|+.|+.....  ......+...  
T Consensus       153 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~--  228 (305)
T 2wtk_C          153 LGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI--YKLFENIGKG--  228 (305)
T ss_dssp             CTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHC--
T ss_pred             cccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH--HHHHHHHhcC--
Confidence            9998654321100   00000     111111    114478999999999999999999874332  2222222111  


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...+     ....+    ..+.+++.+||+.||.+|||++|+++.
T Consensus       229 ~~~~-----~~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          229 SYAI-----PGDCG----PPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             CCCC-----CSSSC----HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CCCC-----CCccC----HHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            1111     11111    236789999999999999999999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=8.9e-34  Score=307.51  Aligned_cols=262  Identities=16%  Similarity=0.258  Sum_probs=182.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++....  ......+.+|+.++++++||||+++++++.+........
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            36788999999999999999996 578999999986543  223456789999999999999999999998753100000


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+++ ++...+....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCC-CHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence            1368999999995 7777776442  3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-----cc---CC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcccC
Q 004232          639 LSIVSEDINSV-----GG---KQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~-----~~---~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~~  704 (766)
                      +++........     ..   +.  ..|.   ....++.++|||||||++|||+||+.|+........ ..+........
T Consensus       170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~  249 (351)
T 3mi9_A          170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  249 (351)
T ss_dssp             TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence            99654321110     00   00  0111   112356788999999999999999999875432211 11111110000


Q ss_pred             ---cccc-----cccc----ccCCCCHHH------HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 ---RQRL-----VDPV----VMATSSLES------LSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ---~~~~-----~d~~----~~~~~~~~~------~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                         ...+     .+..    .......+.      -..+.+|+.+|++.||.+|||++|+++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence               0000     0000    000000111      1337799999999999999999999763

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=303.37  Aligned_cols=257  Identities=16%  Similarity=0.262  Sum_probs=177.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC------
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD------  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~------  555 (766)
                      ++|++.+.||+|+||.||+|+.. +|+.||||++........+.+.+|++++++++||||+++++++...+..-      
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            56888999999999999999975 58999999998776667788999999999999999999999886542100      


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEE
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKL  634 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl  634 (766)
                      .......++||||++ |+|.+++.+.    .+++.....++.|++.||+|||+.   +|+||||||+||+++ +++.+||
T Consensus        91 ~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl  162 (320)
T 2i6l_A           91 LTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKI  162 (320)
T ss_dssp             CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEE
T ss_pred             ccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEE
Confidence            011246899999998 6999988642    378999999999999999999997   899999999999998 5679999


Q ss_pred             ecCCCCcccccccccc-------cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          635 SDYGLSIVSEDINSVG-------GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~-------~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      +|||+++.........       .+.  ..|.   ....++.++|||||||++|||+||+.||......  .....+...
T Consensus       163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~  240 (320)
T 2i6l_A          163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQMQLILES  240 (320)
T ss_dssp             CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHH
T ss_pred             ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHh
Confidence            9999997643211100       000  0111   0133456789999999999999999998743321  111111100


Q ss_pred             cC------cccc-------cccccc-CCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 EG------RQRL-------VDPVVM-ATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ~~------~~~~-------~d~~~~-~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..      ..++       ...... .....     .....+.+++.+||+.||.+|||+.|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          241 IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            00      0000       000000 00000     012347789999999999999999999864

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=5.7e-33  Score=302.76  Aligned_cols=253  Identities=16%  Similarity=0.258  Sum_probs=184.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++......   ..
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~---~~  102 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE---QM  102 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT---TC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcc---cc
Confidence            357899999999999999999854 68899999997543 34457889999999999999999999998765311   11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||++ |+|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       103 ~~~~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~  174 (364)
T 3qyz_A          103 KDVYIVQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGL  174 (364)
T ss_dssp             CCEEEEEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcc
Confidence            35899999998 5999988753    388999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc-------cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCc-
Q 004232          640 SIVSEDINSVG-------GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGR-  705 (766)
Q Consensus       640 a~~~~~~~~~~-------~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~-  705 (766)
                      +..........       ++.  ..|.   ....++.++|||||||++|||+||+.||....... ...+......... 
T Consensus       175 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~  254 (364)
T 3qyz_A          175 ARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE  254 (364)
T ss_dssp             CEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHH
T ss_pred             eEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHH
Confidence            97653321110       010  0111   11235678899999999999999999987543211 1111111000000 


Q ss_pred             --------------cccccc------cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 --------------QRLVDP------VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 --------------~~~~d~------~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                    .....+      ......    ...+.+++.+|++.||.+|||+.|+++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          255 DLNCIINLKARNYLLSLPHKNKVPWNRLFPNA----DSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTS----CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHhhhhhHHHHHHhcCCccCCCHHHhCCCC----CHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                          000000      000111    1347799999999999999999999863

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.3e-33  Score=330.84  Aligned_cols=236  Identities=18%  Similarity=0.299  Sum_probs=180.0

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~  555 (766)
                      ..++|++.++||+|+||+||+|+.. +++.||||+++...   ....+.+..|..++..+ +||||+++++++.+.+   
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~---  415 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMD---  415 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSS---
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCC---
Confidence            3578999999999999999999964 68899999997532   23356678899999987 7999999999887653   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           .+|+||||+++|+|.+++++..   .+++..+..++.||+.||+|||+.   +|+||||||+|||++.++++||+
T Consensus       416 -----~~~lV~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~  484 (674)
T 3pfq_A          416 -----RLYFVMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA  484 (674)
T ss_dssp             -----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEEC
T ss_pred             -----EEEEEEeCcCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEe
Confidence                 7899999999999999998653   388999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccc-cc---ccCCC----CCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          636 DYGLSIVSEDIN-SV---GGKQE----DPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       636 DFGla~~~~~~~-~~---~~~~~----~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      |||+++...... ..   .++..    +......++.++|||||||++|||+||+.||.....  .+....+....  ..
T Consensus       485 DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~~~--~~  560 (674)
T 3pfq_A          485 DFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEHN--VA  560 (674)
T ss_dssp             CCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHSSC--CC
T ss_pred             ecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--HHHHHHHHhCC--CC
Confidence            999997532111 11   11111    111123456788999999999999999999974332  22222222211  11


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSF  743 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~  743 (766)
                      +  |   ...+    ..+.+|+.+|++.||.+||++
T Consensus       561 ~--p---~~~s----~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          561 Y--P---KSMS----KEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             C--C---TTSC----HHHHHHHHHHSCSSSTTCTTC
T ss_pred             C--C---ccCC----HHHHHHHHHHccCCHHHCCCC
Confidence            1  1   1112    236789999999999999998

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=2e-33  Score=312.93  Aligned_cols=193  Identities=18%  Similarity=0.262  Sum_probs=154.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhC------CCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL------RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l------~Hpniv~l~g~~~~~~~~  554 (766)
                      ..+|++.+.||+|+||.||+|+.. +++.||||+++... ...+.+.+|+.+++.+      +|+||+++++++....  
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~--  172 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN--  172 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT--
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC--
Confidence            356889999999999999999854 68999999997643 3346677888888876      6779999999998753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc--E
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI--A  632 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~--~  632 (766)
                            ..++||||+. |+|.+++..... ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.  +
T Consensus       173 ------~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~v  241 (429)
T 3kvw_A          173 ------HICMTFELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGI  241 (429)
T ss_dssp             ------EEEEEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCE
T ss_pred             ------eEEEEEeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcce
Confidence                  7899999997 699998876532 3489999999999999999999997   8999999999999999887  9


Q ss_pred             EEecCCCCccccccccc--cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          633 KLSDYGLSIVSEDINSV--GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       633 kl~DFGla~~~~~~~~~--~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      ||+|||++.........  ++   ..++......++.++|||||||++|||+||+.||...
T Consensus       242 kL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          242 KVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             EECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            99999999654322111  11   1111111234677899999999999999999998754

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=3.4e-33  Score=305.29  Aligned_cols=255  Identities=18%  Similarity=0.283  Sum_probs=179.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+.++++++||||+++++++...+...  .
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~--~  118 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR--N  118 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSST--T
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcc--c
Confidence            35788899999999999999985 46899999999753  3344678889999999999999999999998754211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++||||+. |+|.+++..     .+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus       119 ~~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg  189 (371)
T 4exu_A          119 FYDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFG  189 (371)
T ss_dssp             CCCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTT
T ss_pred             ceeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecC
Confidence            123599999998 688887742     388999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-ccCCC--CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc--C----cc
Q 004232          639 LSIVSEDINSV-GGKQE--DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE--G----RQ  706 (766)
Q Consensus       639 la~~~~~~~~~-~~~~~--~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~--~----~~  706 (766)
                      +++........ .++..  .|.   ....++.++|||||||++|||+||+.||......  +....+....  .    ..
T Consensus       190 ~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~  267 (371)
T 4exu_A          190 LARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL--DQLTQILKVTGVPGTEFVQ  267 (371)
T ss_dssp             CC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCCCHHHHT
T ss_pred             cccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHHHhCCCcHHHHH
Confidence            99754332111 11110  111   1134667899999999999999999999743321  1111110000  0    00


Q ss_pred             cccc--------cc-ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVD--------PV-VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d--------~~-~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+.+        .. .......     .....+.+++.+|++.||.+|||+.|+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            0000        00 0000000     012347899999999999999999999764

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.6e-33  Score=296.54  Aligned_cols=245  Identities=18%  Similarity=0.289  Sum_probs=183.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+.. +++.||||++....  ....+.+.+|++++++++||||+++++++.+.+      
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~------   94 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSS------   94 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS------
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCC------
Confidence            457899999999999999999965 78999999986432  234678899999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC---CcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH---RIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~---~~~kl~  635 (766)
                        ..++||||+++++|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||+++.+   +.+||+
T Consensus        95 --~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~  166 (287)
T 2wei_A           95 --SFYIVGELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKII  166 (287)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             --eEEEEEEccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEe
Confidence              7899999999999999887543   388999999999999999999997   89999999999999754   479999


Q ss_pred             cCCCCccccccccccc---C-C-CCCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          636 DYGLSIVSEDINSVGG---K-Q-EDPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       636 DFGla~~~~~~~~~~~---~-~-~~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |||++...........   + . ..|. ....++.++|||||||++|||++|+.|+......  .....+....  ....
T Consensus       167 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~--~~~~  242 (287)
T 2wei_A          167 DFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKRVETGK--YAFD  242 (287)
T ss_dssp             STTGGGTBCCCSSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC--CCCC
T ss_pred             ccCcceeecCCCccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcCC--CCCC
Confidence            9999865433211110   0 0 0111 0123567889999999999999999998643321  1122221111  0111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+.. ...+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       243 ~~~~-~~~~----~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          243 LPQW-RTIS----DDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             SGGG-TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             chhh-hhcC----HHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            1110 1112    236789999999999999999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=2.2e-33  Score=297.10  Aligned_cols=251  Identities=19%  Similarity=0.279  Sum_probs=179.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC-----
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD-----  555 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~-----  555 (766)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++... ....+.+.+|+.++++++||||+++++++.+...-.     
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            46788999999999999999996 47999999998653 344578899999999999999999999987642100     


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                      .......++||||+++|+|.+++....  ..+++.....++.+++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEe
Confidence            001246899999999999999997643  3477889999999999999999997   89999999999999999999999


Q ss_pred             cCCCCcccccccc------------------cccCC--CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccch
Q 004232          636 DYGLSIVSEDINS------------------VGGKQ--EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL  692 (766)
Q Consensus       636 DFGla~~~~~~~~------------------~~~~~--~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~  692 (766)
                      |||++........                  ..++.  ..|..   ...++.++|||||||++|||++   |+.. ....
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~-~~~~  234 (303)
T 1zy4_A          159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST-GMER  234 (303)
T ss_dssp             CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS-HHHH
T ss_pred             eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC-chhH
Confidence            9999865432100                  00000  01111   1235668899999999999999   3321 1111


Q ss_pred             HHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       693 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+...  ...+ .+...    ......+.+++.+||+.||.+|||+.|+++.
T Consensus       235 ~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          235 VNILKKLRSV--SIEF-PPDFD----DNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             HHHHHHHHST--TCCC-CTTCC----TTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             HHHHHhcccc--cccc-Ccccc----ccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence            1111111110  0111 11111    1112346789999999999999999999863

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=7.2e-34  Score=303.08  Aligned_cols=243  Identities=17%  Similarity=0.268  Sum_probs=180.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCC--CCCcccccceeecCCCCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLR--HPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~--Hpniv~l~g~~~~~~~~~~  556 (766)
                      ..++|++.+.||+|+||.||+|+..+++.||||++...  .....+.+.+|++++++++  ||||+++++++.+.+    
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~----  101 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQ----  101 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSS----
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCC----
Confidence            35678999999999999999999888999999998643  3445678999999999997  599999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||| +.+|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||++++ +.+||+|
T Consensus       102 ----~~~lv~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~D  169 (313)
T 3cek_A          102 ----YIYMVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLID  169 (313)
T ss_dssp             ----EEEEEEC-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECC
T ss_pred             ----EEEEEEe-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEee
Confidence                6899999 67889999997653   488999999999999999999997   8999999999999975 8999999


Q ss_pred             CCCCccccccccc-------ccCC-CCCCc-------------ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH
Q 004232          637 YGLSIVSEDINSV-------GGKQ-EDPNS-------------WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE  695 (766)
Q Consensus       637 FGla~~~~~~~~~-------~~~~-~~~~~-------------~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~  695 (766)
                      ||++.........       +... ..|..             ...++.++|||||||++|||+||+.||....... ..
T Consensus       170 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~  248 (313)
T 3cek_A          170 FGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-SK  248 (313)
T ss_dssp             CSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-HH
T ss_pred             ccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH-HH
Confidence            9999654322110       0000 01111             0234557899999999999999999986432211 11


Q ss_pred             HhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          696 LDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       696 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ............+  +   ...+    ..+.+++.+||+.||.+||++.||++.
T Consensus       249 ~~~~~~~~~~~~~--~---~~~~----~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          249 LHAIIDPNHEIEF--P---DIPE----KDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             HHHHHCTTSCCCC--C---CCSC----HHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHHhcccccCC--c---ccch----HHHHHHHHHHccCCcccCcCHHHHhcC
Confidence            1211111111111  1   1111    236788999999999999999999875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=312.33  Aligned_cols=191  Identities=18%  Similarity=0.336  Sum_probs=139.7

Q ss_pred             CCc-CCceecCCceeEEEEEec---CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          485 FDM-SAIMGEGSYGKLYKGRLE---NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       485 f~~-~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      |++ .++||+|+||+||+|+..   +++.||||++.....  .+.+.+|+.+|++++|||||++++++.+...      .
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~------~   93 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHAD------R   93 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTT------T
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCC------C
Confidence            554 458999999999999965   578999999975432  2467899999999999999999999975431      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCC------CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE----cCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENT------PGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL----NEHR  630 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl----d~~~  630 (766)
                      ..++||||+++ +|.+++....      ....+++..+..++.|++.||+|||+.   +|+||||||+|||+    +.++
T Consensus        94 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~  169 (405)
T 3rgf_A           94 KVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERG  169 (405)
T ss_dssp             EEEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTT
T ss_pred             eEEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCC
Confidence            68999999985 7877765321      122488999999999999999999997   89999999999999    6778


Q ss_pred             cEEEecCCCCcccccccc-------cccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCcccc
Q 004232          631 IAKLSDYGLSIVSEDINS-------VGGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAAR  687 (766)
Q Consensus       631 ~~kl~DFGla~~~~~~~~-------~~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~  687 (766)
                      .+||+|||+++.......       ..++.  ..|.   ....++.++|||||||++|||+||+.||..
T Consensus       170 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~  238 (405)
T 3rgf_A          170 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC  238 (405)
T ss_dssp             CEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             cEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCC
Confidence            999999999976432111       00010  0111   012356678999999999999999999864

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=6.1e-33  Score=297.49  Aligned_cols=260  Identities=19%  Similarity=0.245  Sum_probs=179.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe--cCCceEEEEEccCChh--hhHHHHHHHHHHHHhC---CCCCcccccceeecCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL--ENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~  553 (766)
                      +.++|++.+.||+|+||.||+|+.  .+|+.||||+++....  .....+.+|+.+++.+   +||||++++++|.....
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            457899999999999999999997  4688999999864321  1223456677766665   89999999999873210


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                      .   .....++||||++ |+|.+++..... ..+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.+|
T Consensus        89 ~---~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~k  160 (326)
T 1blx_A           89 D---RETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIK  160 (326)
T ss_dssp             S---SEEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred             C---CCceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEE
Confidence            0   1136899999999 699999876532 3488999999999999999999997   899999999999999999999


Q ss_pred             EecCCCCcccccccccccCCC-----CC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCc
Q 004232          634 LSDYGLSIVSEDINSVGGKQE-----DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGR  705 (766)
Q Consensus       634 l~DFGla~~~~~~~~~~~~~~-----~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~  705 (766)
                      |+|||++..............     .|  .....++.++|||||||++|||+||+.||....... ...+.........
T Consensus       161 l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~  240 (326)
T 1blx_A          161 LADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE  240 (326)
T ss_dssp             ECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred             EecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence            999999865432211111000     11  112345678899999999999999999987433211 1111111000000


Q ss_pred             cccc----cc--cc-------cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          706 QRLV----DP--VV-------MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       706 ~~~~----d~--~~-------~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+.    .+  ..       ...........+.+++.+||+.||.+||++.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0000    00  00       00000011134678999999999999999999985

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=2.4e-33  Score=301.83  Aligned_cols=253  Identities=17%  Similarity=0.247  Sum_probs=183.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe--cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCC------cccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL--ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH------LVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpn------iv~l~g~~~~~~~~  554 (766)
                      ++|++.+.||+|+||.||+|..  .+++.||||+++... ...+.+.+|++++++++|+|      ++++++++.+.+  
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~--   90 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG--   90 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT--
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC--
Confidence            5788999999999999999985  368899999997643 34567889999999887665      999999988753  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC------
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE------  628 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~------  628 (766)
                            ..++||||+ +|+|.+++.+.. ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.      
T Consensus        91 ------~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~  159 (339)
T 1z57_A           91 ------HICIVFELL-GLSTYDFIKENG-FLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEA  159 (339)
T ss_dssp             ------EEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEE
T ss_pred             ------cEEEEEcCC-CCCHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccc
Confidence                  789999999 889999987653 23588999999999999999999997   8999999999999987      


Q ss_pred             -------------CCcEEEecCCCCccccccccc--cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc
Q 004232          629 -------------HRIAKLSDYGLSIVSEDINSV--GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ  690 (766)
Q Consensus       629 -------------~~~~kl~DFGla~~~~~~~~~--~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~  690 (766)
                                   ++.+||+|||++.........  +.   ..++......++.++|||||||++|||+||+.||.....
T Consensus       160 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  239 (339)
T 1z57_A          160 YNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDS  239 (339)
T ss_dssp             EC----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCH
T ss_pred             cCCccccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCh
Confidence                         668999999999764332211  11   111111123456789999999999999999999875332


Q ss_pred             ch-HHHHhhhhccc--------Ccccccc---------------------ccc-cCCCCHHHHHHHHHHHHHhccCCCCC
Q 004232          691 FL-QEELDSLNSQE--------GRQRLVD---------------------PVV-MATSSLESLSIVISIANKCICSESWS  739 (766)
Q Consensus       691 ~~-~~~~~~~~~~~--------~~~~~~d---------------------~~~-~~~~~~~~~~~~~~l~~~C~~~~p~~  739 (766)
                      .. ...+.......        .......                     +.. ...........+.+++.+||+.||.+
T Consensus       240 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  319 (339)
T 1z57_A          240 KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK  319 (339)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence            11 11111110000        0000000                     000 00111233456889999999999999


Q ss_pred             CCCHHHHHHH
Q 004232          740 RPSFEDILWN  749 (766)
Q Consensus       740 RPs~~ev~~~  749 (766)
                      |||+.||++.
T Consensus       320 Rpt~~ell~h  329 (339)
T 1z57_A          320 RITLREALKH  329 (339)
T ss_dssp             SCCHHHHTTS
T ss_pred             ccCHHHHhcC
Confidence            9999999753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.8e-33  Score=301.83  Aligned_cols=276  Identities=19%  Similarity=0.223  Sum_probs=155.2

Q ss_pred             CChHHHHHHHHHHHcC-CCCC-CCCCcc---CCCCCCCCCCCCCccceEecCCCEEEEEeCCCCCCCCCCCCcccccccc
Q 004232           26 LQSSQTQVLLQLRKHL-EYPK-QLEIWI---NHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANAS  100 (766)
Q Consensus        26 ~~~~~~~aLl~~k~~~-~~~~-~l~~W~---~~~~~~C~~~~~~~~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~  100 (766)
                      +..+|++||++||+++ .++. .+++|.   ..+.++|.|.     |+.|....                  .      .
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----g~~~~~~~------------------~------~   74 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT-----GRALKATA------------------D------L   74 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSH-----HHHHHHHH------------------H------H
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccC-----CcchhhhH------------------H------H
Confidence            4568999999999987 3553 457884   3336789874     68884100                  0      0


Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      +           .-...++++.|+|++|.+. .+|+.++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ 
T Consensus        75 l-----------~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-  140 (328)
T 4fcg_A           75 L-----------EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-  140 (328)
T ss_dssp             H-----------HHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-
T ss_pred             H-----------hcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-
Confidence            0           0012344555566665554 45555555666666666666655 55555566666666666666655 


Q ss_pred             CCCcccCCCCCCCEEEccCccCCCCCCccccC---------CCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCC
Q 004232          181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQR---------ISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~  251 (766)
                      .+|..++++++|++|+|++|++.+.+|..+..         +++|++|+|++|.++..++.+..+++|++|++++|++++
T Consensus       141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc
Confidence            45555666666666666665555555555443         666666666666665333335555666666555554442


Q ss_pred             CCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCC
Q 004232          252 NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGK  331 (766)
Q Consensus       252 ~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~  331 (766)
                                            +|..++.+++|+.|++++|++.+.+|..+..+++|+.|+|++|++.+.+|..+..+++
T Consensus       221 ----------------------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~  278 (328)
T 4fcg_A          221 ----------------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ  278 (328)
T ss_dssp             ----------------------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred             ----------------------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence                                  2334445555555555555555555555555555555555555555555555555555


Q ss_pred             ccEEeCcCCccccCCCCCCCCCCCCceeecCCCcC
Q 004232          332 LVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCL  366 (766)
Q Consensus       332 L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l  366 (766)
                      |+.|+|++|++.+.+|..+..+++++.+.+..|.+
T Consensus       279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            55555555555555555555555555555554433

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=2.2e-33  Score=301.31  Aligned_cols=250  Identities=21%  Similarity=0.307  Sum_probs=173.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHH-HHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLD-LLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~-~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|+..+.||+|+||.||+|+.. +|+.||||++.... ....+++.+|+. +++.++||||++++|++.+.+      
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~------   94 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREG------   94 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSS------
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCC------
Confidence            367888999999999999999964 78999999997542 333455566665 777889999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          559 VNKVFLVYEFMSNGNFRTHISEN--TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                        ..++||||+++ +|.+++...  .....+++..+..++.+++.||.|||+.  ++|+||||||+||+++.++.+||+|
T Consensus        95 --~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~D  169 (327)
T 3aln_A           95 --DCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCD  169 (327)
T ss_dssp             --EEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECC
T ss_pred             --ceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEcc
Confidence              68999999995 777766531  1124588999999999999999999985  2789999999999999999999999


Q ss_pred             CCCCccccccccc----c---cCCCCCC----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSV----G---GKQEDPN----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~----~---~~~~~~~----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+++........    +   ...++..    ....++.++|||||||++|||+||+.|+...... ......+.. ...
T Consensus       170 fg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~-~~~  247 (327)
T 3aln_A          170 FGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV-FDQLTQVVK-GDP  247 (327)
T ss_dssp             CSSSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCC-SCC
T ss_pred             CCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH-HHHHHHHhc-CCC
Confidence            9999654322111    1   1111111    1223566889999999999999999998642211 111111111 111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+... .....+    ..+.+++.+||+.||.+||++.||++.
T Consensus       248 ~~~~~~-~~~~~~----~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          248 PQLSNS-EEREFS----PSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             CCCCCC-SSCCCC----HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCCCCc-ccccCC----HHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            111110 001112    247789999999999999999999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=3.2e-33  Score=303.26  Aligned_cols=257  Identities=17%  Similarity=0.271  Sum_probs=182.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++||||+++++++......   ..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~---~~   86 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFE---NF   86 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCST---TC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccC---cc
Confidence            467889999999999999999965 68999999997543 34456788999999999999999999988754210   11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||++ |+|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        87 ~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  158 (353)
T 2b9h_A           87 NEVYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGL  158 (353)
T ss_dssp             CCEEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccc
Confidence            36899999998 6999988753    388999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc---------------ccCC-CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhh
Q 004232          640 SIVSEDINSV---------------GGKQ-EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSL  699 (766)
Q Consensus       640 a~~~~~~~~~---------------~~~~-~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~  699 (766)
                      +.........               +... ..|.   ....++.++|||||||++|||++|+.||........ ..+...
T Consensus       159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  238 (353)
T 2b9h_A          159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGI  238 (353)
T ss_dssp             CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            9754321110               0000 0111   012345578999999999999999999875432111 111111


Q ss_pred             hcccC----cccc--------cccc-ccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          700 NSQEG----RQRL--------VDPV-VMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       700 ~~~~~----~~~~--------~d~~-~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .....    ...+        .... .......     .....+.+++.+||+.||.+|||+.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          239 IGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             HCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            00000    0000        0000 0000000     012346789999999999999999999864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=300.30  Aligned_cols=253  Identities=17%  Similarity=0.256  Sum_probs=180.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||++...  .....+.+.+|+.++++++||||+++++++...+...  ..
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~--~~  101 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLR--NF  101 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGG--GC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccc--cc
Confidence            5688889999999999999986 46999999998653  2344677899999999999999999999988754211  11


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...++||||++ |+|.+++..     .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       102 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A          102 YDFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             CCCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             eeEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeeccc
Confidence            24699999998 688887742     388999999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccc-ccCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc---c-------
Q 004232          640 SIVSEDINSV-GGKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ---E-------  703 (766)
Q Consensus       640 a~~~~~~~~~-~~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~---~-------  703 (766)
                      +......... .++.  ..|.   ....++.++|||||||++|||+||+.||......  ..+..+...   .       
T Consensus       173 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~  250 (353)
T 3coi_A          173 ARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL--DQLTQILKVTGVPGTEFVQK  250 (353)
T ss_dssp             TTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH--HHHHHHHHHHCBCCHHHHTT
T ss_pred             ccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHHHHH
Confidence            9754332111 1111  0111   1134567899999999999999999998743321  111111000   0       


Q ss_pred             -----------CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 -----------GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 -----------~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                 .......+.... ........+.+++.+|++.||.+|||+.|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          251 LNDKAAKSYIQSLPQTPRKDFTQ-LFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             CSCHHHHHHHHTSCBCSSCCTTT-TCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HhhHHHHHHHHhCcCCCCccHHH-hcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence                       000000000000 000112347789999999999999999999764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=5.2e-33  Score=306.36  Aligned_cols=258  Identities=14%  Similarity=0.135  Sum_probs=181.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC--------CCCcccccceeecCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR--------HPHLVCLLGHCIDGG  552 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~--------Hpniv~l~g~~~~~~  552 (766)
                      .++|++.+.||+|+||+||+|+. .+++.||||+++... ...+.+.+|+.++++++        ||||+++++++...+
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            36799999999999999999985 568999999997543 34567889999999986        788999999887431


Q ss_pred             CCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC--
Q 004232          553 GRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR--  630 (766)
Q Consensus       553 ~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~--  630 (766)
                      .    .....++||||+ +|++.+++.+.. ...+++..+..++.||+.||+|||+.+  +|+||||||+|||++.++  
T Consensus       115 ~----~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~  186 (397)
T 1wak_A          115 V----NGTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQY  186 (397)
T ss_dssp             T----TEEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHH
T ss_pred             C----CCceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchh
Confidence            1    013689999999 556666665432 234899999999999999999999853  799999999999999775  


Q ss_pred             -----------------------------------------------cEEEecCCCCccccccccc--cc---CCCCCCc
Q 004232          631 -----------------------------------------------IAKLSDYGLSIVSEDINSV--GG---KQEDPNS  658 (766)
Q Consensus       631 -----------------------------------------------~~kl~DFGla~~~~~~~~~--~~---~~~~~~~  658 (766)
                                                                     .+||+|||++.........  ++   ..++...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~  266 (397)
T 1wak_A          187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLI  266 (397)
T ss_dssp             HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHH
T ss_pred             hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhc
Confidence                                                           7999999999754332111  11   1111111


Q ss_pred             ccCCCCCCCEeehhHHHHHHhcCCCccccCccc----hHHHHhhhh---cc--------c-Cccccccc----------c
Q 004232          659 WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF----LQEELDSLN---SQ--------E-GRQRLVDP----------V  712 (766)
Q Consensus       659 ~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~----~~~~~~~~~---~~--------~-~~~~~~d~----------~  712 (766)
                      ...++.++|||||||++|||+||+.||......    .......+.   ..        . ....+...          .
T Consensus       267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (397)
T 1wak_A          267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK  346 (397)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence            234567899999999999999999998643210    111111110   00        0 00000000          0


Q ss_pred             c---------cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 V---------MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~---------~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .         ......+....+.+|+.+||+.||.+|||+.||++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            0         00123445566889999999999999999999975

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.6e-33  Score=312.55  Aligned_cols=241  Identities=17%  Similarity=0.215  Sum_probs=169.8

Q ss_pred             CCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcceEE
Q 004232          485 FDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      |...++||+|+||+||.+...+|+.||||++...   ..+.+.+|+.+++++ +|||||++++++.+.+        ..+
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~--------~~~   85 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDR--------FLY   85 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSS--------EEE
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCC--------eEE
Confidence            4446789999999998776678999999998643   235678899999886 8999999999887653        789


Q ss_pred             EEEEccCCCChhhhhhcCCCCC-C---CCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC----------
Q 004232          564 LVYEFMSNGNFRTHISENTPGK-V---LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH----------  629 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~-~---l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~----------  629 (766)
                      +||||+. |+|.+++....... .   ..+..+..++.||+.||+|||+.   +|+||||||+|||++.+          
T Consensus        86 lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~  161 (434)
T 2rio_A           86 IALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTG  161 (434)
T ss_dssp             EEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTC
T ss_pred             EEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccC
Confidence            9999996 69999997643211 1   12334578999999999999997   89999999999999754          


Q ss_pred             ---CcEEEecCCCCccccccccc--------ccCC--CCCCc---------ccCCCCCCCEeehhHHHHHHhc-CCCccc
Q 004232          630 ---RIAKLSDYGLSIVSEDINSV--------GGKQ--EDPNS---------WEMTKLEDDVFSFGFMLLESVA-GPSVAA  686 (766)
Q Consensus       630 ---~~~kl~DFGla~~~~~~~~~--------~~~~--~~~~~---------~~~~~~~~DV~SfGvil~Ellt-G~~p~~  686 (766)
                         +.+||+|||+++........        .++.  ..|..         ...++.++|||||||++|||+| |+.|+.
T Consensus       162 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~  241 (434)
T 2rio_A          162 AENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFG  241 (434)
T ss_dssp             CCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             CCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCC
Confidence               48999999999765432110        0111  01110         1345667899999999999999 899986


Q ss_pred             cCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          687 RKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..............      ....  ............+.+++.+||+.||.+|||+.||++
T Consensus       242 ~~~~~~~~i~~~~~------~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          242 DKYSRESNIIRGIF------SLDE--MKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             STTTHHHHHHHTCC------CCCC--CTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CchhhHHHHhcCCC------Cccc--ccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            43222111111110      1000  111112233456889999999999999999999985

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=8.9e-33  Score=303.26  Aligned_cols=196  Identities=20%  Similarity=0.278  Sum_probs=153.6

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CC-----CcccccceeecCCC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HP-----HLVCLLGHCIDGGG  553 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hp-----niv~l~g~~~~~~~  553 (766)
                      ..++|++.+.||+|+||+||+|+.. +++.||||+++... ...+++.+|+.+++.++ |+     +|+++++++...+ 
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~-  129 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN-  129 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT-
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC-
Confidence            4578999999999999999999854 68899999997543 34567788898888885 55     3899999888753 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCc
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN--EHRI  631 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld--~~~~  631 (766)
                             ..++||||++ |+|.+++..... ..+++..+..++.|++.||+|||++. .+|+||||||+|||++  .++.
T Consensus       130 -------~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~-~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          130 -------HLCLVFEMLS-YNLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLATPE-LSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             -------EEEEEEECCC-CBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTSTT-TCEECCCCSGGGEEESSTTSCC
T ss_pred             -------ceEEEEecCC-CCHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhccCC-CCEEcCCCCcccEEEecCCCCc
Confidence                   7899999997 599999876532 34899999999999999999999632 3899999999999994  5788


Q ss_pred             EEEecCCCCccccccccc--cc---CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          632 AKLSDYGLSIVSEDINSV--GG---KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~--~~---~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      +||+|||+++........  ++   ..++......++.++|||||||++|||+||+.||...
T Consensus       200 ~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             EEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             EEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999765332111  11   1111111234567899999999999999999999753

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=3.7e-33  Score=300.73  Aligned_cols=249  Identities=18%  Similarity=0.239  Sum_probs=167.6

Q ss_pred             hcCCCcC-CceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMS-AIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|.+. ++||+|+||.||+|+.. +|+.||||++...... .+   +....++.++||||+++++++......    .
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~----~   98 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA-RQ---EVDHHWQASGGPHIVCILDVYENMHHG----K   98 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH-HH---HHHHHHHHTTSTTBCCEEEEEEEEETT----E
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH-HH---HHHHHHHhcCCCChHHHHHHHhhccCC----C
Confidence            4678874 46999999999999865 6999999998654321 12   222345677999999999998753210    1


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~D  636 (766)
                      ...++||||+++|+|.+++.+.. ...+++..+..++.+++.||+|||+.   +|+||||||+||+++.   ++.+||+|
T Consensus        99 ~~~~lv~e~~~gg~L~~~l~~~~-~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~D  174 (336)
T 3fhr_A           99 RCLLIIMECMEGGELFSRIQERG-DQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTD  174 (336)
T ss_dssp             EEEEEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred             ceEEEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEec
Confidence            35899999999999999998653 24589999999999999999999997   8999999999999986   45699999


Q ss_pred             CCCCcccccccccc--c----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHH-H-HhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSVG--G----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQE-E-LDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~~--~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~-~-~~~~~~~~~~~~~  708 (766)
                      ||++..........  +    ..++......++.++|||||||++|||++|+.||......... . ...+..  .....
T Consensus       175 fg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~  252 (336)
T 3fhr_A          175 FGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRL--GQYGF  252 (336)
T ss_dssp             CTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CC
T ss_pred             cccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhc--ccccc
Confidence            99996543221110  0    0111111112234689999999999999999998643221110 0 000000  00111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..+.. ...+    ..+.+++.+||+.||.+|||+.|+++.
T Consensus       253 ~~~~~-~~~~----~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          253 PNPEW-SEVS----EDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             CTTTS-TTCC----HHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             Cchhh-ccCC----HHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            11110 1112    336789999999999999999999874

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=297.82  Aligned_cols=238  Identities=24%  Similarity=0.382  Sum_probs=173.0

Q ss_pred             HHHhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh------hhHHHHHHHHHHHHhC----CCCCcccccce
Q 004232          479 KEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKL----RHPHLVCLLGH  547 (766)
Q Consensus       479 ~~~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l----~Hpniv~l~g~  547 (766)
                      ....++|++.+.||+|+||.||+|+. .+++.||||+++....      .....+.+|+.+++++    +||||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            33457899999999999999999985 4688999999965432      1233466789999988    89999999999


Q ss_pred             eecCCCCCCcCcceEEEEEEc-cCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE
Q 004232          548 CIDGGGRDDYAVNKVFLVYEF-MSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL  626 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey-~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl  626 (766)
                      +.+.+        ..++|+|| +++|+|.+++.+..   .+++..+..++.+++.||+|||+.   +|+||||||+||++
T Consensus       107 ~~~~~--------~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~  172 (312)
T 2iwi_A          107 FETQE--------GFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILI  172 (312)
T ss_dssp             C-------------CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEE
T ss_pred             EecCC--------eEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEE
Confidence            87653        57999999 89999999997653   389999999999999999999997   89999999999999


Q ss_pred             c-CCCcEEEecCCCCcccccccccccCC--C--CCCc--ccC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          627 N-EHRIAKLSDYGLSIVSEDINSVGGKQ--E--DPNS--WEM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       627 d-~~~~~kl~DFGla~~~~~~~~~~~~~--~--~~~~--~~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      + .++.+||+|||++............+  .  .|..  ... .+.++|||||||++|||++|+.||....    .... 
T Consensus       173 ~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~-  247 (312)
T 2iwi_A          173 DLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ----EILE-  247 (312)
T ss_dssp             ETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HHHH-
T ss_pred             eCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH----HHhh-
Confidence            9 88999999999987654322111110  0  0100  011 2236899999999999999999986321    1110 


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                           ....+     ....+    ..+.+++.+||+.||.+||++.||++.
T Consensus       248 -----~~~~~-----~~~~~----~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          248 -----AELHF-----PAHVS----PDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             -----TCCCC-----CTTSC----HHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             -----hccCC-----cccCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                 00111     01111    236789999999999999999999863

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.98  E-value=2.3e-32  Score=291.74  Aligned_cols=246  Identities=23%  Similarity=0.279  Sum_probs=165.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||.||+|+.. +|+.||||++....  ....+.+.++..+++.++||||+++++++.+.+      
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------   97 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNT------   97 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS------
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCC------
Confidence            467888899999999999999975 78999999997543  222344455556788889999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+ ++.+..+.....  ..+++..+..++.+++.||+|||+.+  +|+||||||+||+++.++.+||+|||
T Consensus        98 --~~~lv~e~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg  170 (318)
T 2dyl_A           98 --DVFIAMELM-GTCAEKLKKRMQ--GPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFG  170 (318)
T ss_dssp             --EEEEEECCC-SEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred             --cEEEEEecc-CCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhhC--CEEeCCCCHHHEEECCCCCEEEEECC
Confidence              789999999 445554443322  34889999999999999999999831  79999999999999999999999999


Q ss_pred             CCccccccccc----ccCC-CCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          639 LSIVSEDINSV----GGKQ-EDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       639 la~~~~~~~~~----~~~~-~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ++.........    +... ..|.       ....++.++|||||||++|||+||+.||...... ...+..+... ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~-~~~  248 (318)
T 2dyl_A          171 ISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD-FEVLTKVLQE-EPP  248 (318)
T ss_dssp             TC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH-HHHHHHHHHS-CCC
T ss_pred             CchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc-HHHHHHHhcc-CCC
Confidence            98654322111    1100 0111       1123456789999999999999999998743221 1112222111 111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+...   ...+    ..+.+++.+||+.||.+||++.||++.
T Consensus       249 ~~~~~---~~~~----~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          249 LLPGH---MGFS----GDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             CCCSS---SCCC----HHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCCcc---CCCC----HHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            11110   0111    236788999999999999999999864

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.98  E-value=6.2e-33  Score=318.68  Aligned_cols=267  Identities=15%  Similarity=0.143  Sum_probs=186.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++......  ....
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~--~~~~   91 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKL--APND   91 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCC--CTTS
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccc--cCCC
Confidence            6799999999999999999986 46899999998754 344567899999999999999999999987652110  0113


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc---EEEecC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI---AKLSDY  637 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~---~kl~DF  637 (766)
                      ..++||||+++|+|.+++........+++..+..++.+++.||+|||+.   +|+||||||+||+++.++.   +||+||
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DF  168 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDL  168 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccc
Confidence            5799999999999999998755444688889999999999999999997   8999999999999996654   999999


Q ss_pred             CCCccccccccc-------ccCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhccc-------
Q 004232          638 GLSIVSEDINSV-------GGKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE-------  703 (766)
Q Consensus       638 Gla~~~~~~~~~-------~~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~-------  703 (766)
                      |++.........       .+..++......++.++|||||||++|||+||..||...... ..+...+....       
T Consensus       169 G~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~-~~~~~~i~~~~~~~~~~~  247 (676)
T 3qa8_A          169 GYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP-VQWHGKVREKSNEHIVVY  247 (676)
T ss_dssp             CCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH-HHSSTTCC------CCSC
T ss_pred             ccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch-hhhhhhhhcccchhhhhh
Confidence            999765432211       111122222345567899999999999999999998643211 11111000000       


Q ss_pred             ----Cccccccc-cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHH-----HHHHHHHHHh
Q 004232          704 ----GRQRLVDP-VVMATSSLESLSIVISIANKCICSESWSRPSFED-----ILWNLQYAAQ  755 (766)
Q Consensus       704 ----~~~~~~d~-~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~e-----v~~~L~~~~~  755 (766)
                          ....+... .............+.+++.+|++.||.+|||+.|     ..+.++.+..
T Consensus       248 ~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~  309 (676)
T 3qa8_A          248 DDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS  309 (676)
T ss_dssp             CCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred             hhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence                00000000 0001111223455789999999999999999988     5566666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=6e-32  Score=305.71  Aligned_cols=268  Identities=21%  Similarity=0.156  Sum_probs=162.1

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +++.|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+.
T Consensus        38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            34555544444556777777777777777777766777777777777777777776555555667777777777777777


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC--
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL--  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~--  256 (766)
                      +..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+. +..+++|+.|++++|.+++..+..  
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~  197 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK  197 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred             cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence            66666777777777777777777766666677777777777777777654443 566666666666666665544322  


Q ss_pred             -CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEE
Q 004232          257 -PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF  335 (766)
Q Consensus       257 -~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L  335 (766)
                       ...|+.+++++|.+.+.+|..+....+|+.|++++|++++.++..+..+++|+.|+|++|.+++..+..+..+.+|+.|
T Consensus       198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (477)
T 2id5_A          198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI  277 (477)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred             cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence             1345555555555554444444444455555555555555544445555555555555555554444445555555555


Q ss_pred             eCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          336 DISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       336 ~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      +|++|++++..|..+..+++|+.|++++|.++
T Consensus       278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             ECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            55555555555555555555555555555544

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.98  E-value=9.8e-33  Score=307.15  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=168.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ..+|+..++||+|+||+||.....+|+.||||++.....   ..+.+|+++++++ +|||||++++++.+..        
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~--------   91 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQ--------   91 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETT--------
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCC--------
Confidence            345888899999999996655556789999999865432   2356799999999 7999999999988753        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-----CCcEEEe
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-----HRIAKLS  635 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-----~~~~kl~  635 (766)
                      ..++||||++ |+|.+++.....  ...+.....++.||+.||+|||+.   +|+||||||+|||++.     ...+||+
T Consensus        92 ~~~lv~E~~~-g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~  165 (432)
T 3p23_A           92 FQYIAIELCA-ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMIS  165 (432)
T ss_dssp             EEEEEEECCS-EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEEC
T ss_pred             EEEEEEECCC-CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEe
Confidence            7899999997 599999876532  234445678999999999999997   8999999999999943     3468899


Q ss_pred             cCCCCcccccccc--------cccCC-CCCCc-----ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhh
Q 004232          636 DYGLSIVSEDINS--------VGGKQ-EDPNS-----WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLN  700 (766)
Q Consensus       636 DFGla~~~~~~~~--------~~~~~-~~~~~-----~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~  700 (766)
                      |||+++.......        .++.. ..|..     ...++.++|||||||++|||+| |+.|+..........   ..
T Consensus       166 DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~---~~  242 (432)
T 3p23_A          166 DFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI---LL  242 (432)
T ss_dssp             CTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHH---HT
T ss_pred             cccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHH---Hh
Confidence            9999865432110        01100 01111     1234457899999999999999 888885432211111   11


Q ss_pred             cccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       701 ~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ... ......+      ....-..+.+++.+||+.||.+|||+.||++
T Consensus       243 ~~~-~~~~~~~------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          243 GAC-SLDCLHP------EKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             TCC-CCTTSCT------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccC-CccccCc------cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            110 0111111      1122234678999999999999999999983

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.98  E-value=2.3e-32  Score=296.33  Aligned_cols=252  Identities=15%  Similarity=0.219  Sum_probs=179.0

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CC-ceEEEEEccCChhhhHHHHHHHHHHHHhCCCCC------cccccceeecCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NG-TSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH------LVCLLGHCIDGGGR  554 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpn------iv~l~g~~~~~~~~  554 (766)
                      ++|++.+.||+|+||+||+|+.. ++ +.||||+++... ...+.+.+|+.++++++|++      ++.+++++...+  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--   95 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG--   95 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT--
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC--
Confidence            67889999999999999999864 34 789999997543 34567888999999998776      888888887653  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEE--------
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL--------  626 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILl--------  626 (766)
                            ..++||||+ +|++.+++.+.. ...+++..+..++.|++.||+|||+.   +|+||||||+|||+        
T Consensus        96 ------~~~lv~e~~-~~~l~~~l~~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~  164 (355)
T 2eu9_A           96 ------HMCIAFELL-GKNTFEFLKENN-FQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETL  164 (355)
T ss_dssp             ------EEEEEEECC-CCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEE
T ss_pred             ------eEEEEEecc-CCChHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccc
Confidence                  789999999 667777776543 23589999999999999999999997   89999999999999        


Q ss_pred             -----------cCCCcEEEecCCCCccccccccc-ccC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCcc
Q 004232          627 -----------NEHRIAKLSDYGLSIVSEDINSV-GGK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQ  690 (766)
Q Consensus       627 -----------d~~~~~kl~DFGla~~~~~~~~~-~~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~  690 (766)
                                 +.++.+||+|||+++........ .++    .++......++.++|||||||++|||+||+.||.....
T Consensus       165 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  244 (355)
T 2eu9_A          165 YNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHEN  244 (355)
T ss_dssp             ECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             ccccccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCH
Confidence                       66789999999999754332111 111    11111123456789999999999999999999975432


Q ss_pred             ch-HHHHhhhhcc--------cCccccc-cccc---------------------cCCCCHHHHHHHHHHHHHhccCCCCC
Q 004232          691 FL-QEELDSLNSQ--------EGRQRLV-DPVV---------------------MATSSLESLSIVISIANKCICSESWS  739 (766)
Q Consensus       691 ~~-~~~~~~~~~~--------~~~~~~~-d~~~---------------------~~~~~~~~~~~~~~l~~~C~~~~p~~  739 (766)
                      .. ...+......        ....... ....                     ...........+.+|+.+||+.||.+
T Consensus       245 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  324 (355)
T 2eu9_A          245 REHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ  324 (355)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence            11 1111111000        0000000 0000                     00011122346889999999999999


Q ss_pred             CCCHHHHHH
Q 004232          740 RPSFEDILW  748 (766)
Q Consensus       740 RPs~~ev~~  748 (766)
                      |||+.||++
T Consensus       325 Rpt~~e~l~  333 (355)
T 2eu9_A          325 RITLAEALL  333 (355)
T ss_dssp             SCCHHHHTT
T ss_pred             CcCHHHHhc
Confidence            999999975

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.98  E-value=5.2e-33  Score=297.45  Aligned_cols=236  Identities=20%  Similarity=0.318  Sum_probs=178.7

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh------hhHHHHHHHHHHHHhCC--CCCcccccceeecC
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLR--HPHLVCLLGHCIDG  551 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~--Hpniv~l~g~~~~~  551 (766)
                      ..++|++.+.||+|+||.||+|+. .+++.||||++.....      ...+.+.+|+.++++++  ||||+++++++.+.
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            456799999999999999999985 5789999999865421      12345678999999996  59999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CC
Q 004232          552 GGRDDYAVNKVFLVYEFMSN-GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EH  629 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~  629 (766)
                      +        ..++|+||+.+ ++|.+++.+..   .+++..+..++.|++.||+|||+.   +|+||||||+||+++ ++
T Consensus       121 ~--------~~~lv~e~~~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          121 D--------SFVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             S--------EEEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTT
T ss_pred             C--------cEEEEEEcCCCCccHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCC
Confidence            3        68999999986 89999997643   488999999999999999999997   899999999999999 78


Q ss_pred             CcEEEecCCCCccccccccccc--CC--CCCC--ccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcc
Q 004232          630 RIAKLSDYGLSIVSEDINSVGG--KQ--EDPN--SWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQ  702 (766)
Q Consensus       630 ~~~kl~DFGla~~~~~~~~~~~--~~--~~~~--~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~  702 (766)
                      +.+||+|||++...........  +.  ..|.  ... ..+.++|||||||++|||+||+.||....    ....   . 
T Consensus       187 ~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~----~~~~---~-  258 (320)
T 3a99_A          187 GELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----EIIR---G-  258 (320)
T ss_dssp             TEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HHHH---C-
T ss_pred             CCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh----hhhc---c-
Confidence            9999999999876543221111  00  0111  011 12346799999999999999999986321    1110   0 


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ... ..    ...+    ..+.+++.+||+.||.+||++.||++.
T Consensus       259 --~~~-~~----~~~~----~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          259 --QVF-FR----QRVS----SECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             --CCC-CS----SCCC----HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --ccc-cc----ccCC----HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              000 11    1111    236789999999999999999999763

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.97  E-value=2.5e-32  Score=298.49  Aligned_cols=258  Identities=13%  Similarity=0.176  Sum_probs=181.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-----------CCCcccccceeec
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-----------HPHLVCLLGHCID  550 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-----------Hpniv~l~g~~~~  550 (766)
                      ++|.+.+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|++++++++           ||||+++++++..
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5688899999999999999985 578999999997543 34567888999998886           8999999999886


Q ss_pred             CCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---
Q 004232          551 GGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---  627 (766)
Q Consensus       551 ~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---  627 (766)
                      .+.    .....++||||+ +|+|.+++.+... ..+++..+..++.||+.||+|||+.+  +|+||||||+|||++   
T Consensus        98 ~~~----~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           98 KGP----NGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             EET----TEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEE
T ss_pred             cCC----CCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccC
Confidence            421    112689999999 8999999876432 34889999999999999999999852  799999999999994   


Q ss_pred             ---CCCcEEEecCCCCcccccccccc-cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc----hHHH
Q 004232          628 ---EHRIAKLSDYGLSIVSEDINSVG-GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF----LQEE  695 (766)
Q Consensus       628 ---~~~~~kl~DFGla~~~~~~~~~~-~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~----~~~~  695 (766)
                         ..+.+||+|||++.......... ++    .++......++.++|||||||++|||+||+.||......    ....
T Consensus       170 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  249 (373)
T 1q8y_A          170 SPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH  249 (373)
T ss_dssp             TTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred             CCcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence               34589999999997654321111 11    111111234567899999999999999999998743211    0111


Q ss_pred             Hhhhhc-ccC---------------------ccccccccc---------cCCCCHHHHHHHHHHHHHhccCCCCCCCCHH
Q 004232          696 LDSLNS-QEG---------------------RQRLVDPVV---------MATSSLESLSIVISIANKCICSESWSRPSFE  744 (766)
Q Consensus       696 ~~~~~~-~~~---------------------~~~~~d~~~---------~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~  744 (766)
                      ...+.. .+.                     ...+.....         ...........+.+|+.+||+.||.+|||++
T Consensus       250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  329 (373)
T 1q8y_A          250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG  329 (373)
T ss_dssp             HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred             HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence            111100 000                     000000000         0012234456688999999999999999999


Q ss_pred             HHHHH
Q 004232          745 DILWN  749 (766)
Q Consensus       745 ev~~~  749 (766)
                      ||++.
T Consensus       330 ell~h  334 (373)
T 1q8y_A          330 GLVNH  334 (373)
T ss_dssp             HHHTC
T ss_pred             HHhhC
Confidence            99763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=5e-31  Score=296.20  Aligned_cols=253  Identities=19%  Similarity=0.200  Sum_probs=228.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCC-CccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV-PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      ++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            67999999999999999999999999999999999998665 56799999999999999999999999999999999999


Q ss_pred             ccCccCCCCCCcc--ccCCCCCCEEEccCCccCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCC---------------
Q 004232          197 MRNNKLAGPFPSS--IQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKLP---------------  257 (766)
Q Consensus       197 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~L~~L~ls~N~l~~~~p~~~---------------  257 (766)
                      |++|++++.+|..  +..+++|++|+|++|.+++..|.  +..+++|++|++++|.+++..|...               
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999999866665  99999999999999999998776  7899999999999999988766421               


Q ss_pred             ----------------------CCCcEEEccCCcCccCCcccccC-----------------------------------
Q 004232          258 ----------------------RGLVMAFLSNNSFSGEIPKQYGQ-----------------------------------  280 (766)
Q Consensus       258 ----------------------~~l~~l~ls~N~l~~~~p~~~~~-----------------------------------  280 (766)
                                            ..|+.+++++|++++..|..+..                                   
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                  35788899999888766655432                                   


Q ss_pred             ----CCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCC
Q 004232          281 ----LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDK  356 (766)
Q Consensus       281 ----l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l  356 (766)
                          .++|+.|++++|++++.+|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence                2589999999999999999999999999999999999999989999999999999999999998889999999999


Q ss_pred             ceeecCCCcCCCCc
Q 004232          357 RVVKFRGNCLSSNV  370 (766)
Q Consensus       357 ~~l~l~~N~l~~~~  370 (766)
                      +.|++++|.+++..
T Consensus       350 ~~L~Ls~N~l~~~~  363 (455)
T 3v47_A          350 EVLDLSYNHIRALG  363 (455)
T ss_dssp             CEEECCSSCCCEEC
T ss_pred             CEEECCCCcccccC
Confidence            99999999987643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.97  E-value=5e-32  Score=319.27  Aligned_cols=240  Identities=18%  Similarity=0.264  Sum_probs=177.5

Q ss_pred             cCCCcCCceecCCceeEEEEEec--CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE--NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~--~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||.||+|+..  +|+.||||++... .....+.+.+|+.++++++|||||+++++|.+.+...   .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~---~  156 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHG---D  156 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTS---C
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCC---C
Confidence            67999999999999999999964  6899999998643 3445667899999999999999999999998764211   1


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ...|+||||+++|+|.+++..     .++|..+..++.||+.||+|||+.   +|+||||||+|||++.+ .+||+|||+
T Consensus       157 ~~~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~  227 (681)
T 2pzi_A          157 PVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGA  227 (681)
T ss_dssp             EEEEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred             ceeEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEeccc
Confidence            126999999999999987753     489999999999999999999997   89999999999999986 899999999


Q ss_pred             CcccccccccccCCC--CCCc-ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          640 SIVSEDINSVGGKQE--DPNS-WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       640 a~~~~~~~~~~~~~~--~~~~-~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ++.........++..  .|.. ...++.++|||||||++|||++|..|+.....               ..+...    .
T Consensus       228 a~~~~~~~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~~~~~----~  288 (681)
T 2pzi_A          228 VSRINSFGYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYV---------------DGLPED----D  288 (681)
T ss_dssp             CEETTCCSCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SSCCTT----C
T ss_pred             chhcccCCccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccc---------------cccccc----c
Confidence            976544322211111  1110 11235678999999999999999887652110               000000    0


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCC-HHHHHHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPS-FEDILWNLQYA  753 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs-~~ev~~~L~~~  753 (766)
                      ........+.+++.+||+.||.+||+ ++++...|+..
T Consensus       289 ~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          289 PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV  326 (681)
T ss_dssp             HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence            00111234778999999999999995 55566666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.5e-31  Score=307.65  Aligned_cols=256  Identities=20%  Similarity=0.199  Sum_probs=215.7

Q ss_pred             Ccccc-cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCccc
Q 004232          108 DSFVT-TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWF  186 (766)
Q Consensus       108 ~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  186 (766)
                      +.+|. .+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|
T Consensus        64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  143 (597)
T 3oja_B           64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF  143 (597)
T ss_dssp             SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh
Confidence            44554 47889999999999999999888899999999999999999998888889999999999999999997777778


Q ss_pred             CCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCC-------------------CCCEEECCCC
Q 004232          187 DSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLG-------------------SLNVLNLSDN  247 (766)
Q Consensus       187 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~-------------------~L~~L~ls~N  247 (766)
                      +++++|++|+|++|.+++..|..|..+++|++|+|++|.+++..  +..++                   +|+.|++++|
T Consensus       144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  221 (597)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred             ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence            99999999999999999988889999999999999999998753  23333                   4555555555


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCC
Q 004232          248 KLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN  327 (766)
Q Consensus       248 ~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~  327 (766)
                      .++...+..+..|+.|+|++|.+++  +..++.+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++ +|..+.
T Consensus       222 ~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  298 (597)
T 3oja_B          222 SINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ  298 (597)
T ss_dssp             CCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSS
T ss_pred             cccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccc
Confidence            5554444555678889999999886  4678889999999999999999988889999999999999999986 577777


Q ss_pred             CCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCC
Q 004232          328 CGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       328 ~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~  369 (766)
                      .+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus       299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence            7889999999999998 5777778888899999999988753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=7e-32  Score=287.63  Aligned_cols=232  Identities=27%  Similarity=0.449  Sum_probs=211.1

Q ss_pred             CCCCEEecccccccc--cCCccccCCCCCCEEeccc-ccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          118 TSLRVLSLVSLGIWG--SLPDKIHRLYSLEYLDLSS-NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~--~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      .+++.|+|++|.+.+  .+|..|.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468999999999999  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCC-CCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLG-SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~-~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~  272 (766)
                      |+|++|++++.+|..+..+++|++|+|++|.+++.+|. +..++ +|++|++++|                     ++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N---------------------~l~~  188 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---------------------RLTG  188 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS---------------------EEEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC---------------------eeec
Confidence            99999999999999999999999999999999977764 66666 7777766655                     4555


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCC
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN  352 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~  352 (766)
                      .+|..++.++ |+.|++++|++++.+|..+..+++|+.|+|++|++++.+|. +..+++|+.|++++|++++.+|..+..
T Consensus       189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc
Confidence            7788888887 99999999999999999999999999999999999988776 788899999999999999999999999


Q ss_pred             CCCCceeecCCCcCCCCcCC
Q 004232          353 ESDKRVVKFRGNCLSSNVQN  372 (766)
Q Consensus       353 ~~~l~~l~l~~N~l~~~~~~  372 (766)
                      +++|+.|++++|.+++.+|.
T Consensus       267 l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          267 LKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCC
T ss_pred             CcCCCEEECcCCcccccCCC
Confidence            99999999999999876553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.3e-30  Score=284.93  Aligned_cols=256  Identities=20%  Similarity=0.210  Sum_probs=209.1

Q ss_pred             CCccccc-ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcc
Q 004232          107 IDSFVTT-LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNW  185 (766)
Q Consensus       107 ~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  185 (766)
                      +..+|.. +.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..
T Consensus        57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  136 (390)
T 3o6n_A           57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI  136 (390)
T ss_dssp             ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence            4455654 688999999999999998888889999999999999999999888888999999999999999999665566


Q ss_pred             cCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCC-------------------CCEEECCC
Q 004232          186 FDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGS-------------------LNVLNLSD  246 (766)
Q Consensus       186 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~-------------------L~~L~ls~  246 (766)
                      |+++++|++|++++|++++..|..+..+++|++|+|++|.+++..  +..+++                   |+.|++++
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~  214 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  214 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred             hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCC
Confidence            799999999999999999888888999999999999999998642  333444                   55555555


Q ss_pred             CCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccC
Q 004232          247 NKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL  326 (766)
Q Consensus       247 N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~  326 (766)
                      |.++.........|+.+++++|++++.  ..++.+++|+.|++++|.+++.+|..+..+++|+.|+|++|++++ +|..+
T Consensus       215 n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  291 (390)
T 3o6n_A          215 NSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG  291 (390)
T ss_dssp             SCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS
T ss_pred             CeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc
Confidence            555544344456788888888888763  568888889999999999888888888888899999999998885 56666


Q ss_pred             CCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          327 NCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       327 ~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      ..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++.
T Consensus       292 ~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            77888899999999888 566667777888889998888874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=5.4e-30  Score=298.62  Aligned_cols=259  Identities=22%  Similarity=0.234  Sum_probs=162.9

Q ss_pred             cccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCcc-CCCCCCCCEEEccCCcCCCCC--Ccc
Q 004232          109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPK-ISTMVKLQTLILDDNFFNNTI--PNW  185 (766)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~--p~~  185 (766)
                      .+|..+.++++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+.+|.. +..+++|++|++++|.+++..  |..
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            55666666666666666666666666666666666666666666666555443 666666666666666666544  555


Q ss_pred             cCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC--CCCCCCCCEEECCCCCCCCCCCCC---CCCC
Q 004232          186 FDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKL---PRGL  260 (766)
Q Consensus       186 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~L~~L~ls~N~l~~~~p~~---~~~l  260 (766)
                      ++++++|++|++++|++++..|..+..+++|+.|++++|.+++..+.  +..+++|++|++++|.+++..|..   ...|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            66666666666666666666666666666666666666666655442  556666666666666666555543   2456


Q ss_pred             cEEEccCCcCccC---CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeC
Q 004232          261 VMAFLSNNSFSGE---IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI  337 (766)
Q Consensus       261 ~~l~ls~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~l  337 (766)
                      +.+++++|++++.   .+..++.+++|+.|++++|++++.+|..|..+++|+.|+|++|++++..|..+..++.| .|++
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L  530 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL  530 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence            6666666666652   22456666666666666666666666666666666666666666666666666666666 6666


Q ss_pred             cCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          338 SNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       338 s~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      ++|++++.+|..+..+++++.+++++|++.+
T Consensus       531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          531 ASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             cCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            6666666666555566666666666666553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.1e-30  Score=305.41  Aligned_cols=254  Identities=20%  Similarity=0.262  Sum_probs=152.1

Q ss_pred             cccccc--CCCCCCEEecccccccccCCccccCCCCCCEEeccccc-Ccc-CCCccCCCC------CCCCEEEccCCcCC
Q 004232          110 FVTTLA--RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNF-LFG-SVPPKISTM------VKLQTLILDDNFFN  179 (766)
Q Consensus       110 ~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~  179 (766)
                      +|..++  ++++|++|+|++|.+.|.+|+.|+++++|++|+|++|+ ++| .+|..++++      ++|++|+|++|+++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            566666  66666666666666666666666666666666666666 666 566666554      66666666666666


Q ss_pred             CCCCc--ccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCC-CCEEECCCCCCCCCCCCC
Q 004232          180 NTIPN--WFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGS-LNVLNLSDNKLDSNLPKL  256 (766)
Q Consensus       180 ~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~-L~~L~ls~N~l~~~~p~~  256 (766)
                       .+|.  .++++++|++|+|++|+++|.+| .+..+++|++|+|++|+++..++.+..+++ |++|++++|.++ .+|..
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence             5666  66666666666666666666666 666666666666666666633334556666 666666666665 34432


Q ss_pred             C-----CCCcEEEccCCcCccCCccccc-------CCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCc
Q 004232          257 P-----RGLVMAFLSNNSFSGEIPKQYG-------QLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPK  324 (766)
Q Consensus       257 ~-----~~l~~l~ls~N~l~~~~p~~~~-------~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~  324 (766)
                      .     .+|+.+++++|++++.+|..|.       .+++|+.|++++|+++.+++..+..+++|+.|+|++|+++ .+|.
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~  474 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK  474 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence            1     1455666666666666665555       5556666666666666555444445556666666666665 4444


Q ss_pred             cCCCC--------CCccEEeCcCCccccCCCCCCC--CCCCCceeecCCCcCCC
Q 004232          325 NLNCG--------GKLVFFDISNNKLTGGLPSCLS--NESDKRVVKFRGNCLSS  368 (766)
Q Consensus       325 ~~~~~--------~~L~~L~ls~N~l~g~~p~~~~--~~~~l~~l~l~~N~l~~  368 (766)
                      .....        ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence            32221        15555666666655 4555544  55555666666655554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.2e-29  Score=296.85  Aligned_cols=128  Identities=23%  Similarity=0.177  Sum_probs=82.1

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +|+.|.+.+..+.+|.+|++|++|+|++|.|.+..|++|.+|++|++|+|++|+|++..+..|.+|++|++|+|++|+++
T Consensus        58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            34555444333456666777777777777666666666667777777777777666555556666777777777777666


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCC-CCCccccCCCCCCEEEccCCccC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAIS  227 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~  227 (766)
                      +..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|+++
T Consensus       138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            6555666666777777777766654 34566666666666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=8e-30  Score=297.17  Aligned_cols=154  Identities=19%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             CCCCCCCCCCccceEecC-----------CCEEEEEeCCCCCCCCC--CCCcccc-ccccCCCcccCCcccccccCCCCC
Q 004232           55 ADFCYISSSTQVNITCQD-----------NFITELKIIGDKPSNVG--NFDGFAS-ANASLSENFSIDSFVTTLARLTSL  120 (766)
Q Consensus        55 ~~~C~~~~~~~~gv~C~~-----------~~v~~l~l~~~~~~~~~--~~~~~~~-~~~~l~~n~~~~~~~~~l~~l~~L  120 (766)
                      .+||.+.. ....|.|..           ..++.++++++.+.+..  .|.++.. ...+++.|...+..|..|.++++|
T Consensus         4 ~~~c~~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L   82 (606)
T 3vq2_A            4 LNPCIEVV-PNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL   82 (606)
T ss_dssp             --CCEEEE-TTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCceecC-CCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence            35676521 224588853           24667777666544321  1222111 122455565555556677788888


Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEEEccC
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN-TIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~  199 (766)
                      ++|+|++|.+.+..|+.|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++ .+|..|+++++|++|+|++
T Consensus        83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            888888888877777778888888888888888876666778888888888888888775 5677788888888888888


Q ss_pred             ccCCCCCCcc
Q 004232          200 NKLAGPFPSS  209 (766)
Q Consensus       200 N~l~~~~p~~  209 (766)
                      |++++..|..
T Consensus       163 n~l~~~~~~~  172 (606)
T 3vq2_A          163 NYIQTITVND  172 (606)
T ss_dssp             SCCCEECTTT
T ss_pred             CcceecChhh
Confidence            8777655543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=306.70  Aligned_cols=301  Identities=19%  Similarity=0.211  Sum_probs=242.6

Q ss_pred             eEecCCCEEEEEeCCCCCCCCC--CCCcccc-ccccCCCcccCCcc-cccccCCCCCCEEecccccccccCCccccCCCC
Q 004232           68 ITCQDNFITELKIIGDKPSNVG--NFDGFAS-ANASLSENFSIDSF-VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYS  143 (766)
Q Consensus        68 v~C~~~~v~~l~l~~~~~~~~~--~~~~~~~-~~~~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~  143 (766)
                      |.+....++.|+++++.+.+..  .|.++.. ...+++.|...+.+ |..|.+|++|++|+|++|.+.+..|+.|+++++
T Consensus        19 vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            3333346778888776554321  2222111 12245556555566 667888888888888888888888888888888


Q ss_pred             CCEEecccccCccCCCcc--CCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCEEEccCccCCCCCCccccCC--CCCCE
Q 004232          144 LEYLDLSSNFLFGSVPPK--ISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQRI--STLSD  218 (766)
Q Consensus       144 L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~  218 (766)
                      |++|+|++|.+++.+|..  |.++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++..|..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            888888888888766665  8888888888888888887655 578888888888888888888888888777  78888


Q ss_pred             EEccCCccCCCCCC-CCCCCC------CCEEECCCCCCCCCCCCC-----------------------------------
Q 004232          219 LDLSKNAISGSLPD-LSSLGS------LNVLNLSDNKLDSNLPKL-----------------------------------  256 (766)
Q Consensus       219 L~Ls~N~l~~~~p~-~~~l~~------L~~L~ls~N~l~~~~p~~-----------------------------------  256 (766)
                      |+|+.|.+++..|. +..+.+      |++|++++|.+++.++..                                   
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            88888888876653 444443      999999999877654321                                   


Q ss_pred             ------CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCC
Q 004232          257 ------PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGG  330 (766)
Q Consensus       257 ------~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~  330 (766)
                            ..+++.+++++|.+++..|..|+.+++|+.|+|++|++++.+|..|..+++|+.|+|++|++++..|..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence                  14688999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             CccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          331 KLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       331 ~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +|+.|++++|++++..+..+..+++|+.|++++|.+++
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            99999999999998888889999999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=7.1e-30  Score=297.59  Aligned_cols=268  Identities=21%  Similarity=0.185  Sum_probs=221.1

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +++.|.+.+..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|.++
T Consensus        39 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           39 EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             ECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred             EccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence            46666666666778999999999999999999888999999999999999999998888889999999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCC--EEECCCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLN--VLNLSDNKLDSNLPKL  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~--~L~ls~N~l~~~~p~~  256 (766)
                      +..|..|+++++|++|+|++|++++..++.+..+++|++|+|++|.+++..|. +..+++|+  .|++++|.+++..|..
T Consensus       119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~  198 (606)
T 3t6q_A          119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA  198 (606)
T ss_dssp             CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred             cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence            87788899999999999999999875544555589999999999999876654 67788888  8899999888766543


Q ss_pred             CC------------------------------------------------------CCcEEEccCCcCccCCcccccCCC
Q 004232          257 PR------------------------------------------------------GLVMAFLSNNSFSGEIPKQYGQLN  282 (766)
Q Consensus       257 ~~------------------------------------------------------~l~~l~ls~N~l~~~~p~~~~~l~  282 (766)
                      ..                                                      .++.+++++|.+++..+..|+.++
T Consensus       199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~  278 (606)
T 3t6q_A          199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS  278 (606)
T ss_dssp             TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred             hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence            21                                                      456778888888887777788888


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCC-CCCCCCCceeec
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC-LSNESDKRVVKF  361 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~-~~~~~~l~~l~l  361 (766)
                      +|++|++++|+++..| ..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|.. +..+++|+.+++
T Consensus       279 ~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          279 GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TCSEEECTTSCCSCCC-SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             CCCEEeccCCccCCCC-hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            8888888888888544 46788888888888888888777878888888888888888888777654 778888888888


Q ss_pred             CCCcCCC
Q 004232          362 RGNCLSS  368 (766)
Q Consensus       362 ~~N~l~~  368 (766)
                      ++|.+++
T Consensus       358 ~~n~l~~  364 (606)
T 3t6q_A          358 SHDDIET  364 (606)
T ss_dssp             CSSCCCE
T ss_pred             CCCcccc
Confidence            8888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.8e-29  Score=267.83  Aligned_cols=246  Identities=19%  Similarity=0.259  Sum_probs=219.6

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            57899999999999888889999999999999999999888999999999999999999998 5666554  79999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCC--CCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISG--SLP-DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~  274 (766)
                      ++|++++..+..+.++++|+.|++++|.++.  ..+ .+..+++|++|++++|.++......+..|+.+++++|++++..
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence            9999998888889999999999999999963  333 4788999999999999998766666788999999999999988


Q ss_pred             cccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCC--
Q 004232          275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN--  352 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~--  352 (766)
                      |..|..+++|+.|++++|++++.++..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+..  
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            999999999999999999999999888999999999999999998 88989999999999999999999776666643  


Q ss_pred             ----CCCCceeecCCCcCC
Q 004232          353 ----ESDKRVVKFRGNCLS  367 (766)
Q Consensus       353 ----~~~l~~l~l~~N~l~  367 (766)
                          ...++.+++.+|.+.
T Consensus       288 ~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                356788999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=7e-30  Score=304.36  Aligned_cols=256  Identities=20%  Similarity=0.240  Sum_probs=150.8

Q ss_pred             CCCcccCCcccccccCCCCCCEEeccccc-ccc-cCCccccCCC-------CCCEEecccccCccCCCc--cCCCCCCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLG-IWG-SLPDKIHRLY-------SLEYLDLSSNFLFGSVPP--KISTMVKLQ  169 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~L~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~  169 (766)
                      ++.|...+.+|..+++|++|+.|+|++|. ++| .+|..|++++       +|++|+|++|+++ .+|.  .|.++++|+
T Consensus       498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~  576 (876)
T 4ecn_A          498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG  576 (876)
T ss_dssp             EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred             CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence            33454555566666666666666666665 555 5565544443       6666666666665 5555  566666666


Q ss_pred             EEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCC-CCEEEccCCccCCCCCCCCCCC--CCCEEECCC
Q 004232          170 TLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST-LSDLDLSKNAISGSLPDLSSLG--SLNVLNLSD  246 (766)
Q Consensus       170 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~l~--~L~~L~ls~  246 (766)
                      .|+|++|.++ .+| .|+++++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++..+..+..++  +|+.|++++
T Consensus       577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred             EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence            6666666666 555 5666666666666666666 56666666666 6666666666663222233333  366666666


Q ss_pred             CCCCCCCCCCC--------CCCcEEEccCCcCccCCccc-ccCCCCCCEEEccCCcCCCCCccccCC-------CCCCCe
Q 004232          247 NKLDSNLPKLP--------RGLVMAFLSNNSFSGEIPKQ-YGQLNQLQQLDMSFNALRGMPPPAIFS-------LPNISD  310 (766)
Q Consensus       247 N~l~~~~p~~~--------~~l~~l~ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~~~~~~~-------l~~L~~  310 (766)
                      |++++.+|.++        .+|+.|+|++|+++ .+|.. +..+++|+.|+|++|+++.+++..+..       +++|+.
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~  732 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT  732 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccE
Confidence            66666555433        24566666666666 33333 335666666666666666444433322       226666


Q ss_pred             EEeecCcCcccCCccCC--CCCCccEEeCcCCccccCCCCCCCCCCCCceeecCC
Q 004232          311 LNLASNKFSGSLPKNLN--CGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       311 L~L~~N~l~g~~p~~~~--~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~  363 (766)
                      |+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++
T Consensus       733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             EECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            666666666 5566554  56666666666666665 566666666666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=306.56  Aligned_cols=271  Identities=21%  Similarity=0.217  Sum_probs=241.5

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccC-CccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSL-PDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFF  178 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  178 (766)
                      +++.|.+.+..|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus        30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            56777777777889999999999999999777776 78899999999999999999999999999999999999999999


Q ss_pred             CCCCCcc--cCCCCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCC-CCCC--CCCCEEECCCCCCCCC
Q 004232          179 NNTIPNW--FDSLPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPD-LSSL--GSLNVLNLSDNKLDSN  252 (766)
Q Consensus       179 ~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l--~~L~~L~ls~N~l~~~  252 (766)
                      ++.+|..  |+++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++..+. +..+  ++|+.|++++|.+.+.
T Consensus       110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred             CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence            9877765  9999999999999999998765 5799999999999999999987764 5555  8999999999999987


Q ss_pred             CCCCC---------CCCcEEEccCCcCccCCcccccC--------------------------------------CCCCC
Q 004232          253 LPKLP---------RGLVMAFLSNNSFSGEIPKQYGQ--------------------------------------LNQLQ  285 (766)
Q Consensus       253 ~p~~~---------~~l~~l~ls~N~l~~~~p~~~~~--------------------------------------l~~L~  285 (766)
                      .|...         ..|+.+++++|.+++.+|..+..                                      .++|+
T Consensus       190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~  269 (844)
T 3j0a_A          190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR  269 (844)
T ss_dssp             CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred             cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence            66421         13899999999988777665542                                      26899


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCc
Q 004232          286 QLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNC  365 (766)
Q Consensus       286 ~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~  365 (766)
                      .|++++|.+.+.++..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.
T Consensus       270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred             EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc
Q 004232          366 LSSNV  370 (766)
Q Consensus       366 l~~~~  370 (766)
                      +++..
T Consensus       350 i~~~~  354 (844)
T 3j0a_A          350 IAIIQ  354 (844)
T ss_dssp             CCCCC
T ss_pred             CCccC
Confidence            87543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.7e-29  Score=298.46  Aligned_cols=241  Identities=22%  Similarity=0.201  Sum_probs=151.3

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +++.|...+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.++
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  110 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ  110 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence            34445444444456777777777777777777777777777777777777777776544446777777777777777777


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC---CCCCCCCCEEECCCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD---LSSLGSLNVLNLSDNKLDSNLPKL  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~l~~L~~L~ls~N~l~~~~p~~  256 (766)
                      +..|..|+++++|++|+|++|++++..|..+.++++|++|+|++|.+++..+.   ...+++|++|++++|.+++..|..
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  190 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC  190 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred             ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence            66666777777777777777777776666777777777777777777665543   234466677777777666554431


Q ss_pred             C------------------------------CCCcEEEccCCcCccCCcccccCCCC--CCEEEccCCcCCCCCccccCC
Q 004232          257 P------------------------------RGLVMAFLSNNSFSGEIPKQYGQLNQ--LQQLDMSFNALRGMPPPAIFS  304 (766)
Q Consensus       257 ~------------------------------~~l~~l~ls~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~~~~~~~~~~  304 (766)
                      .                              ..++.+++++|++++..|..|..++.  |+.|++++|++++.+|..|..
T Consensus       191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~  270 (680)
T 1ziw_A          191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW  270 (680)
T ss_dssp             GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC
Confidence            0                              23455555666665555555555533  666666666666555555555


Q ss_pred             CCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCC
Q 004232          305 LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN  340 (766)
Q Consensus       305 l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N  340 (766)
                      +++|+.|+|++|++++..|..+..+.+|+.|++++|
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             cccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            666666666666665555555544444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=1.9e-29  Score=293.96  Aligned_cols=112  Identities=21%  Similarity=0.221  Sum_probs=87.4

Q ss_pred             CCEEEEEeCCCCCCCCC--CCCccc-cccccCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEec
Q 004232           73 NFITELKIIGDKPSNVG--NFDGFA-SANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDL  149 (766)
Q Consensus        73 ~~v~~l~l~~~~~~~~~--~~~~~~-~~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~L  149 (766)
                      ..++.++++++.+.+..  .|.++. .....++.|...+..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            35778888776554321  222211 112356777776767889999999999999999999888888999999999999


Q ss_pred             ccccCcc-CCCccCCCCCCCCEEEccCCcCCCCCCc
Q 004232          150 SSNFLFG-SVPPKISTMVKLQTLILDDNFFNNTIPN  184 (766)
Q Consensus       150 s~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~  184 (766)
                      ++|.+.+ .+|..|+++++|++|+|++|++++..|.
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            9999986 5799999999999999999988765544

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=4.6e-31  Score=284.39  Aligned_cols=248  Identities=16%  Similarity=0.160  Sum_probs=166.3

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--------hhhHHHHHHHHHHHHhCC---------CCCcccc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKLR---------HPHLVCL  544 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l~---------Hpniv~l  544 (766)
                      .++|++.+.||+|+||+||+|+. +|+.||||+++...        ....+.+.+|+.++++++         |||||++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35678889999999999999987 68999999997542        223477889999999886         5555555


Q ss_pred             cc-----------------eeecCCCCC-----CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHH
Q 004232          545 LG-----------------HCIDGGGRD-----DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA  602 (766)
Q Consensus       545 ~g-----------------~~~~~~~~~-----~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~g  602 (766)
                      .+                 ++.+..+..     .......++||||+++|++.+.+.+    ..+++.....++.||+.|
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence            44                 443310000     0012478999999999987776643    237899999999999999


Q ss_pred             HHHHh-cCCCCCcccCCCCCCceEEcCCC--------------------cEEEecCCCCcccccccccccCC-CCCCcc-
Q 004232          603 VQFLH-TGVIPGFFNNRVKTNNILLNEHR--------------------IAKLSDYGLSIVSEDINSVGGKQ-EDPNSW-  659 (766)
Q Consensus       603 L~yLH-~~~~~~ivHrdlk~~NILld~~~--------------------~~kl~DFGla~~~~~~~~~~~~~-~~~~~~-  659 (766)
                      |+||| +.   +|+||||||+|||++.++                    .+||+|||+|+........++.. ..|... 
T Consensus       174 L~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~  250 (336)
T 2vuw_A          174 LAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFT  250 (336)
T ss_dssp             HHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGC
T ss_pred             HHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhc
Confidence            99999 76   899999999999999886                    89999999998765433222211 111111 


Q ss_pred             cCCCCCCCEeehhHH-HHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCC
Q 004232          660 EMTKLEDDVFSFGFM-LLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESW  738 (766)
Q Consensus       660 ~~~~~~~DV~SfGvi-l~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~  738 (766)
                      ...+.++||||+|++ .+++++|..|+.... +.......+.......    ..............+.+|+.+|++.|  
T Consensus       251 g~~~~~~Diwsl~~~~~~~~~~g~~p~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~dli~~~L~~d--  323 (336)
T 2vuw_A          251 GDGDYQFDIYRLMKKENNNRWGEYHPYSNVL-WLHYLTDKMLKQMTFK----TKCNTPAMKQIKRKIQEFHRTMLNFS--  323 (336)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCTTSCCTHHHHH-HHHHHHHHHHHTCCCS----SCCCSHHHHHHHHHHHHHHHHGGGSS--
T ss_pred             CCCccceehhhhhCCCCcccccccCCCcchh-hhhHHHHhhhhhhccC----cccchhhhhhcCHHHHHHHHHHhccC--
Confidence            122567899998776 888999998875210 0011111111000000    00000111233456889999999976  


Q ss_pred             CCCCHHHHH
Q 004232          739 SRPSFEDIL  747 (766)
Q Consensus       739 ~RPs~~ev~  747 (766)
                         |++|++
T Consensus       324 ---sa~e~l  329 (336)
T 2vuw_A          324 ---SATDLL  329 (336)
T ss_dssp             ---SHHHHH
T ss_pred             ---CHHHHH
Confidence               888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.9e-29  Score=267.41  Aligned_cols=245  Identities=21%  Similarity=0.233  Sum_probs=216.2

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            57999999999999888889999999999999999999888999999999999999999998 5666554  89999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCC--CCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISG--SLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~  274 (766)
                      ++|++++..+..|..+++|+.|++++|.++.  ..+. +..+ +|++|++++|++++....++..|+.+++++|++++..
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence            9999997777789999999999999999963  4443 6666 9999999999998866667788999999999999988


Q ss_pred             cccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCC-
Q 004232          275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNE-  353 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~-  353 (766)
                      |..|..+++|+.|++++|++++.++..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+... 
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  288 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG  288 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence            899999999999999999999999888999999999999999998 788889999999999999999997777666543 


Q ss_pred             -----CCCceeecCCCcCC
Q 004232          354 -----SDKRVVKFRGNCLS  367 (766)
Q Consensus       354 -----~~l~~l~l~~N~l~  367 (766)
                           ..++.+++.+|.+.
T Consensus       289 ~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                 56788999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=8.6e-29  Score=285.71  Aligned_cols=263  Identities=25%  Similarity=0.277  Sum_probs=184.2

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      ++++|.+.+..+..|.++++|++|+|++|.+++..|+.|.++++|++|||++|+++ .+|..  .+++|++|+|++|+++
T Consensus        58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B           58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS
T ss_pred             ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc
Confidence            46666666656678888888888888888888888888888888888888888887 46655  7888888888888887


Q ss_pred             C-CCCcccCCCCCCCEEEccCccCCC-------------------------CCCccccCCC-------------------
Q 004232          180 N-TIPNWFDSLPSLTFLSMRNNKLAG-------------------------PFPSSIQRIS-------------------  214 (766)
Q Consensus       180 ~-~~p~~~~~l~~L~~L~L~~N~l~~-------------------------~~p~~~~~l~-------------------  214 (766)
                      + .+|..|+++++|++|+|++|++++                         ..|..+..+.                   
T Consensus       135 ~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~  214 (562)
T 3a79_B          135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN  214 (562)
T ss_dssp             BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred             ccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence            6 346778888888888888877653                         2333333222                   


Q ss_pred             --------------------------------------------------------------CCCEEEccCCccCCCCCC
Q 004232          215 --------------------------------------------------------------TLSDLDLSKNAISGSLPD  232 (766)
Q Consensus       215 --------------------------------------------------------------~L~~L~Ls~N~l~~~~p~  232 (766)
                                                                                    +|++|++++|.++|.+|.
T Consensus       215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~  294 (562)
T 3a79_B          215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR  294 (562)
T ss_dssp             EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred             hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence                                                                          455556666666655543


Q ss_pred             -C-----------------------------------------------------CCCCCCCEEECCCCCCCCCCCCC--
Q 004232          233 -L-----------------------------------------------------SSLGSLNVLNLSDNKLDSNLPKL--  256 (766)
Q Consensus       233 -~-----------------------------------------------------~~l~~L~~L~ls~N~l~~~~p~~--  256 (766)
                       +                                                     ..+++|++|++++|++++.+|..  
T Consensus       295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  374 (562)
T 3a79_B          295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS  374 (562)
T ss_dssp             CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence             2                                                     45567777777777777655543  


Q ss_pred             -CCCCcEEEccCCcCcc--CCcccccCCCCCCEEEccCCcCCC-CCccccCCCCCCCeEEeecCcCcccCCccCCCCCCc
Q 004232          257 -PRGLVMAFLSNNSFSG--EIPKQYGQLNQLQQLDMSFNALRG-MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKL  332 (766)
Q Consensus       257 -~~~l~~l~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L  332 (766)
                       ...|+.+++++|++++  .+|..|+.+++|+.|++++|++++ .++..+..+++|+.|+|++|++++.+|..+.  ++|
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L  452 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV  452 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence             2456777777777775  234567777777777777777777 4444566677777777777777766665543  577


Q ss_pred             cEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          333 VFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       333 ~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +.|++++|+++ .+|..+..+++|+.|++++|.++.
T Consensus       453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence            77888888777 567666677788888888887774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.3e-29  Score=285.43  Aligned_cols=132  Identities=22%  Similarity=0.266  Sum_probs=83.1

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCcc--CCcccccCCCCCCEEEccCCcCCC-CCccccCCCCC
Q 004232          234 SSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSG--EIPKQYGQLNQLQQLDMSFNALRG-MPPPAIFSLPN  307 (766)
Q Consensus       234 ~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~  307 (766)
                      ..+++|++|++++|++++.+|..   ...|+.+++++|++++  .+|..++.+++|++|++++|++++ .++..+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            45556666666666666654432   2456666666666665  445566666666666666666666 33334566666


Q ss_pred             CCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          308 ISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       308 L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      |+.|+|++|++++.+|..+.  .+|+.||+++|+++ .+|..+..+++|+.+++++|.++.
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence            66666666666666655543  56677777777776 566666666777777777776663

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.96  E-value=1.6e-30  Score=288.04  Aligned_cols=247  Identities=14%  Similarity=0.132  Sum_probs=165.6

Q ss_pred             HhcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHHHHHHHHHHhCCC-CCcccccce--------
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNLKLRLDLLAKLRH-PHLVCLLGH--------  547 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~~~e~~~l~~l~H-pniv~l~g~--------  547 (766)
                      .+..|...++||+|+||+||+|+. .+|+.||||++.....   ...+.+++|+.+++.++| +|......+        
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            345577788999999999999994 5799999999874322   235779999999999987 433222211        


Q ss_pred             -eecCCCC---------CCcCcceEEEEEEccCCCChhhhhhc----CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004232          548 -CIDGGGR---------DDYAVNKVFLVYEFMSNGNFRTHISE----NTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPG  613 (766)
Q Consensus       548 -~~~~~~~---------~~~~~~~~~lv~Ey~~~GsL~~~l~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  613 (766)
                       +...+..         ........+++|+++ +|+|.+++..    ......++|..++.++.|+++||+|||+.   +
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~  231 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G  231 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence             1111000         000012356777754 5799988742    11223478889999999999999999997   8


Q ss_pred             cccCCCCCCceEEcCCCcEEEecCCCCcccccccccccCCC--CCC------------cccCCCCCCCEeehhHHHHHHh
Q 004232          614 FFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE--DPN------------SWEMTKLEDDVFSFGFMLLESV  679 (766)
Q Consensus       614 ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~~~~--~~~------------~~~~~~~~~DV~SfGvil~Ell  679 (766)
                      |+||||||+|||++.++.+||+|||+++.............  .|.            ....++.++|||||||++|||+
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ell  311 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW  311 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHH
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999865443211111010  111            1112345789999999999999


Q ss_pred             cCCCccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          680 AGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       680 tG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ||+.||......           .....++...  ...+    ..+.+|+.+||+.||.+||++.|+++
T Consensus       312 tg~~Pf~~~~~~-----------~~~~~~~~~~--~~~~----~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          312 CADLPNTDDAAL-----------GGSEWIFRSC--KNIP----QPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             HSSCCCCTTGGG-----------SCSGGGGSSC--CCCC----HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HCCCCCCCcchh-----------hhHHHHHhhc--ccCC----HHHHHHHHHHccCChhhCcCHHHHHh
Confidence            999998643211           0011111100  0112    33778999999999999999777743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.9e-29  Score=283.67  Aligned_cols=252  Identities=21%  Similarity=0.205  Sum_probs=232.0

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            47899999999999999999999999999999999999988999999999999999999999877788999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCC---CCCCCcEEEccCCcCccC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPK---LPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~---~~~~l~~l~ls~N~l~~~  273 (766)
                      ++|++++..|..|..+++|+.|+|++|.+++..+ .+..+++|++|++++|++++..+.   -..+|+.+++++|.+++.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            9999999999999999999999999999998766 488999999999999999876543   246899999999999998


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCC
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNE  353 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~  353 (766)
                      .+..|..+++|+.|++++|.+.+.+|.......+|+.|+|++|++++..+..+..+++|+.|+|++|.+++..+..+..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            88899999999999999999888887777778899999999999995544678899999999999999999888899999


Q ss_pred             CCCceeecCCCcCCCC
Q 004232          354 SDKRVVKFRGNCLSSN  369 (766)
Q Consensus       354 ~~l~~l~l~~N~l~~~  369 (766)
                      ++|+.|++++|.+++.
T Consensus       272 ~~L~~L~L~~n~l~~~  287 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVV  287 (477)
T ss_dssp             TTCCEEECCSSCCSEE
T ss_pred             ccCCEEECCCCccceE
Confidence            9999999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.2e-29  Score=272.01  Aligned_cols=204  Identities=22%  Similarity=0.299  Sum_probs=127.9

Q ss_pred             CCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEE
Q 004232          141 LYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD  220 (766)
Q Consensus       141 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  220 (766)
                      ..+++.|+|++|.+. .+|+.++++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            455666666666665 56666666666666666666666 56666666666666666666666 5666666666666666


Q ss_pred             ccCCccCCCCCC-CC---------CCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEcc
Q 004232          221 LSKNAISGSLPD-LS---------SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMS  290 (766)
Q Consensus       221 Ls~N~l~~~~p~-~~---------~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls  290 (766)
                      |++|++.+.+|. +.         .+++|++|++++|++                     + .+|..++.+++|+.|+|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l---------------------~-~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---------------------R-SLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC---------------------C-CCCGGGGGCTTCCEEEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc---------------------C-cchHhhcCCCCCCEEEcc
Confidence            666666665553 22         244444444444333                     2 355556666666666666


Q ss_pred             CCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCCc
Q 004232          291 FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV  370 (766)
Q Consensus       291 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~~  370 (766)
                      +|++++.++ .+..+++|+.|+|++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+
T Consensus       215 ~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          215 NSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             SSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            666666444 4666666666666666666666666666666666666666666666666666666666666666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.1e-28  Score=265.39  Aligned_cols=259  Identities=22%  Similarity=0.232  Sum_probs=223.7

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++.|...+..+..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.++ .+|..+.  ++|++|++++|.++
T Consensus        60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~  136 (332)
T 2ft3_A           60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR  136 (332)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence            46666655555678999999999999999999999999999999999999999997 6777666  89999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCC--CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL-  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~-  256 (766)
                      +..+..|.++++|++|++++|.++  +..|..+..+ +|++|++++|.+++.+..+.  ++|++|++++|.+++..+.. 
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l  213 (332)
T 2ft3_A          137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDL  213 (332)
T ss_dssp             CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSS
T ss_pred             ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHh
Confidence            887888999999999999999996  4778888888 99999999999998554444  79999999999999877653 


Q ss_pred             --CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCC------
Q 004232          257 --PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC------  328 (766)
Q Consensus       257 --~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~------  328 (766)
                        ...|+.|++++|++++..|..|+.+++|+.|++++|+++.++ ..+..+++|+.|+|++|++++..+..+..      
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  292 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK  292 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence              357899999999999988889999999999999999999654 56899999999999999999776666654      


Q ss_pred             CCCccEEeCcCCccc--cCCCCCCCCCCCCceeecCCCc
Q 004232          329 GGKLVFFDISNNKLT--GGLPSCLSNESDKRVVKFRGNC  365 (766)
Q Consensus       329 ~~~L~~L~ls~N~l~--g~~p~~~~~~~~l~~l~l~~N~  365 (766)
                      ...|+.|++++|.++  +..|..+..+++++.+++++|.
T Consensus       293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            357899999999987  6777888899999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.9e-28  Score=259.99  Aligned_cols=260  Identities=22%  Similarity=0.192  Sum_probs=223.4

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++.|...+..+..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.++ .+|..+.  ++|++|++++|.++
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc
Confidence            46666655555568999999999999999999999999999999999999999997 5776665  79999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCC--CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL-  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~-  256 (766)
                      +..+..|.++++|++|++++|.++  +..+..+..+++|++|++++|.++.....+.  ++|++|++++|++++..|.. 
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~  212 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASL  212 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGG
T ss_pred             ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHh
Confidence            988889999999999999999996  4778899999999999999999987544443  89999999999998876643 


Q ss_pred             --CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCC------
Q 004232          257 --PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNC------  328 (766)
Q Consensus       257 --~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~------  328 (766)
                        ..+|+.|++++|++++..+..|..+++|+.|++++|+++.+ |..+..+++|++|+|++|++++..+..+..      
T Consensus       213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence              35799999999999998888999999999999999999965 457899999999999999999776666643      


Q ss_pred             CCCccEEeCcCCcccc--CCCCCCCCCCCCceeecCCCc
Q 004232          329 GGKLVFFDISNNKLTG--GLPSCLSNESDKRVVKFRGNC  365 (766)
Q Consensus       329 ~~~L~~L~ls~N~l~g--~~p~~~~~~~~l~~l~l~~N~  365 (766)
                      ...++.+++++|.+..  ..|..+..+..++.+++++|+
T Consensus       292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3678999999999863  566778888999999999884

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=283.79  Aligned_cols=136  Identities=23%  Similarity=0.214  Sum_probs=100.1

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCccCCc-ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCe
Q 004232          234 SSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGEIP-KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISD  310 (766)
Q Consensus       234 ~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  310 (766)
                      ..+++|++|++++|.+++..+.+  ...|+.+++++|.+++..| ..+..+++|+.|++++|.+++.+|..+..+++|+.
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            34667788888888776544332  3467777788877777655 46777777888888888777777777777777888


Q ss_pred             EEeecCcCc-ccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCC
Q 004232          311 LNLASNKFS-GSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       311 L~L~~N~l~-g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~  369 (766)
                      |+|++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus       450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            888877776 56777777777777778877777777777777777777777777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=5e-29  Score=284.89  Aligned_cols=262  Identities=22%  Similarity=0.233  Sum_probs=185.9

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +++.|...+..|..|.++++|++|+|++|.+.+..|+.|+++++|++|||++|+++ .+|..  .+++|++|+|++|.++
T Consensus        27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCS
T ss_pred             ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccc
Confidence            56777776666788999999999999999999988999999999999999999998 56766  8999999999999998


Q ss_pred             C-CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCC--CEEEccCCcc--CCCCCC-CCCCC----------------
Q 004232          180 N-TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL--SDLDLSKNAI--SGSLPD-LSSLG----------------  237 (766)
Q Consensus       180 ~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~-~~~l~----------------  237 (766)
                      + .+|..|+++++|++|++++|++++   ..+..+++|  +.|+|++|.+  .+..|. +..+.                
T Consensus       104 ~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~  180 (520)
T 2z7x_B          104 ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF  180 (520)
T ss_dssp             SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC
T ss_pred             cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh
Confidence            7 578999999999999999999986   457777888  9999999998  555443 33322                


Q ss_pred             -------------------------------------------------------------------CCCEEECCCCCCC
Q 004232          238 -------------------------------------------------------------------SLNVLNLSDNKLD  250 (766)
Q Consensus       238 -------------------------------------------------------------------~L~~L~ls~N~l~  250 (766)
                                                                                         +|++|++++|+++
T Consensus       181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (520)
T 2z7x_B          181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ  260 (520)
T ss_dssp             CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE
T ss_pred             hhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc
Confidence                                                                               4555555555555


Q ss_pred             CCCCCCC--------CC--------------------------CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCC
Q 004232          251 SNLPKLP--------RG--------------------------LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG  296 (766)
Q Consensus       251 ~~~p~~~--------~~--------------------------l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  296 (766)
                      |.+|...        ..                          ++.+++++|.+....  .+..+++|++|++++|++++
T Consensus       261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~  338 (520)
T 2z7x_B          261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD  338 (520)
T ss_dssp             SCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             CccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence            4444321        11                          222222222222110  01456677777777777777


Q ss_pred             CCccccCCCCCCCeEEeecCcCcc--cCCccCCCCCCccEEeCcCCccccCCCCC-CCCCCCCceeecCCCcCCCC
Q 004232          297 MPPPAIFSLPNISDLNLASNKFSG--SLPKNLNCGGKLVFFDISNNKLTGGLPSC-LSNESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       297 ~~~~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~~~~L~~L~ls~N~l~g~~p~~-~~~~~~l~~l~l~~N~l~~~  369 (766)
                      .+|..+..+++|+.|+|++|++++  .+|..+..+++|+.|++++|++++.+|.. +..+++|+.+++++|.+++.
T Consensus       339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT  414 (520)
T ss_dssp             TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred             hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence            666667777777777777777765  45556666777777777777777645543 55666777777777766643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=5.3e-28  Score=271.36  Aligned_cols=225  Identities=25%  Similarity=0.253  Sum_probs=169.6

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|++.+..|+.|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999999999999999999999999999988899999999999999999999888888999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC--CCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCccC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~  273 (766)
                      ++|+++...+..|.++++|+.|+|++|+..+.++.  +..+++|++|+|++|++++. |.+  ..+|+.|+|++|++++.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCccc
Confidence            99999987777899999999999999655555553  78899999999999988753 332  23455555555555555


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccc
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT  343 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~  343 (766)
                      .|..|..+++|+.|++++|++++.++..|..+++|+.|+|++|+|++..+..+..+.+|+.|+|++|.+.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            5555555555555555555555555555555555555555555555444444455555555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=9.9e-28  Score=276.84  Aligned_cols=288  Identities=19%  Similarity=0.167  Sum_probs=213.3

Q ss_pred             CEEEEEeCCCCCCCCC--CCCcccc-ccccCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecc
Q 004232           74 FITELKIIGDKPSNVG--NFDGFAS-ANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLS  150 (766)
Q Consensus        74 ~v~~l~l~~~~~~~~~--~~~~~~~-~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls  150 (766)
                      .++.++++++.+.+..  .|.++.. ....++.|.+.+..|..|.++++|++|+|++|.++ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4566666655544332  1221111 12244555554445566777777777777777765 45544  66667777777


Q ss_pred             cccCcc-CCCccCCCCCCCCEEEccCCcCC-------------------------CCCCcccCCCC--------------
Q 004232          151 SNFLFG-SVPPKISTMVKLQTLILDDNFFN-------------------------NTIPNWFDSLP--------------  190 (766)
Q Consensus       151 ~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~-------------------------~~~p~~~~~l~--------------  190 (766)
                      +|++++ .+|..|+++++|++|+|++|.++                         +..|..+..+.              
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  209 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF  209 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence            776665 23456666666666666666553                         34444444433              


Q ss_pred             -------------------------------------------------------------------CCCEEEccCccCC
Q 004232          191 -------------------------------------------------------------------SLTFLSMRNNKLA  203 (766)
Q Consensus       191 -------------------------------------------------------------------~L~~L~L~~N~l~  203 (766)
                                                                                         +|++|++++|+++
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  289 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT  289 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence                                                                               6778888888888


Q ss_pred             CCCCccc-----------------------------------------------------cCCCCCCEEEccCCccCCCC
Q 004232          204 GPFPSSI-----------------------------------------------------QRISTLSDLDLSKNAISGSL  230 (766)
Q Consensus       204 ~~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~  230 (766)
                      |.+|..+                                                     ..+++|++|+|++|.+++.+
T Consensus       290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~  369 (562)
T 3a79_B          290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV  369 (562)
T ss_dssp             SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred             ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence            8888765                                                     67889999999999999966


Q ss_pred             C-CCCCCCCCCEEECCCCCCCCCC--CC---CCCCCcEEEccCCcCccCCcc-cccCCCCCCEEEccCCcCCCCCccccC
Q 004232          231 P-DLSSLGSLNVLNLSDNKLDSNL--PK---LPRGLVMAFLSNNSFSGEIPK-QYGQLNQLQQLDMSFNALRGMPPPAIF  303 (766)
Q Consensus       231 p-~~~~l~~L~~L~ls~N~l~~~~--p~---~~~~l~~l~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~~~~~~  303 (766)
                      | .+..+++|++|++++|++++..  |.   -...|+.+++++|++++.+|. .+..+++|+.|++++|++++..|..+.
T Consensus       370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  449 (562)
T 3a79_B          370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP  449 (562)
T ss_dssp             TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred             hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence            6 4899999999999999998732  22   246799999999999985665 588999999999999999987776554


Q ss_pred             CCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCC-CCCCCCCceeecCCCcCCC
Q 004232          304 SLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC-LSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       304 ~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~-~~~~~~l~~l~l~~N~l~~  368 (766)
                        ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++++.+++++|.+.+
T Consensus       450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence              79999999999999 78888889999999999999999 56665 8999999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7.8e-28  Score=269.03  Aligned_cols=225  Identities=26%  Similarity=0.234  Sum_probs=162.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|+.|+|++|++.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57899999999999999999999999999999999999888899999999999999999999877788999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC--CCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCccC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~  273 (766)
                      ++|+++...+..|..+++|++|+|++|+..+.++.  +.++++|++|++++|+++. +|.+  ..+|+.|+|++|++++.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccccCCCcccCEEECCCCccCcc
Confidence            99999987778899999999999999655555553  7889999999999998873 2322  12344444444444444


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccc
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT  343 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~  343 (766)
                      .|..|..+++|+.|+|++|++++.++..|..+++|+.|+|++|++++..+..+..+.+|+.|+|++|.+.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            4444444444444444444444444444444444444444444444433334444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4.4e-28  Score=281.58  Aligned_cols=258  Identities=21%  Similarity=0.167  Sum_probs=220.0

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++.|.+.+..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.++
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence            45666666656679999999999999999999999999999999999999999999766666799999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCC-------------------CCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG-------------------SLPDLSSLGSLN  240 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------~~p~~~~l~~L~  240 (766)
                      +..|..|+++++|++|+|++|.+++..   +..+++|+.|++++|.+++                   ..+.  ..++|+
T Consensus       161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~  235 (597)
T 3oja_B          161 RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELT  235 (597)
T ss_dssp             BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCC
T ss_pred             CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCC
Confidence            999999999999999999999998753   3445566666666555543                   2222  236899


Q ss_pred             EEECCCCCCCCCCCCC--CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcC
Q 004232          241 VLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF  318 (766)
Q Consensus       241 ~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  318 (766)
                      .|+|++|.+++. +.+  ..+|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++++ ..+..+++|+.|+|++|.+
T Consensus       236 ~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          236 ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCC
Confidence            999999999874 332  468999999999999999999999999999999999999964 4677899999999999999


Q ss_pred             cccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          319 SGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       319 ~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      + .+|..+..+++|+.|+|++|.+++. |  +..++.|+.|++++|.+++
T Consensus       314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          314 L-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             C-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             C-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            9 6888888899999999999999865 3  5677899999999998874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=9.4e-28  Score=277.40  Aligned_cols=297  Identities=20%  Similarity=0.198  Sum_probs=209.3

Q ss_pred             CEEEEEeCCCCCCCCC--CCCcccc-ccccCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecc
Q 004232           74 FITELKIIGDKPSNVG--NFDGFAS-ANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLS  150 (766)
Q Consensus        74 ~v~~l~l~~~~~~~~~--~~~~~~~-~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls  150 (766)
                      .++.++++++.+.+..  .|.++.. ...+++.|...+..+..|.++++|++|+|++|.+.+..|..|+++++|++|+|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            4677787776554322  2222111 123456665555455678888888888888888888888888888888888888


Q ss_pred             cccCccCCCccCCCCCCCCEEEccCCcCCC-CCCcccCCCCCCCEEEccCccCCCCCCccccCCCC--------------
Q 004232          151 SNFLFGSVPPKISTMVKLQTLILDDNFFNN-TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST--------------  215 (766)
Q Consensus       151 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--------------  215 (766)
                      +|++++..+..|+++++|++|+|++|.+++ .+|..|+++++|++|++++|++++..|..++.+++              
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence            888876655578888889999999888887 46888888889999988888877655544433333              


Q ss_pred             --------------------------------------------------------------------------------
Q 004232          216 --------------------------------------------------------------------------------  215 (766)
Q Consensus       216 --------------------------------------------------------------------------------  215 (766)
                                                                                                      
T Consensus       189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence                                                                                            


Q ss_pred             ---------------CCEEEccCCccCCCCCCCCC------------------------------------------CCC
Q 004232          216 ---------------LSDLDLSKNAISGSLPDLSS------------------------------------------LGS  238 (766)
Q Consensus       216 ---------------L~~L~Ls~N~l~~~~p~~~~------------------------------------------l~~  238 (766)
                                     |+.|++++|.+++.++.+..                                          +++
T Consensus       269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence                           33333333333322111222                                          222


Q ss_pred             CCEEECCCCCCCCCC--CC---CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCc-cccCCCCCCCeEE
Q 004232          239 LNVLNLSDNKLDSNL--PK---LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP-PAIFSLPNISDLN  312 (766)
Q Consensus       239 L~~L~ls~N~l~~~~--p~---~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~  312 (766)
                      |++|++++|.+++..  |.   -...|+.+++++|.+++..+ .+..+++|+.|++++|.+++.++ ..+..+++|+.|+
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            222233333222110  00   01345555666666654333 38888999999999999998876 5788999999999


Q ss_pred             eecCcCcccCCccCCCCCCccEEeCcCCccc-cCCCCCCCCCCCCceeecCCCcCCCCcC
Q 004232          313 LASNKFSGSLPKNLNCGGKLVFFDISNNKLT-GGLPSCLSNESDKRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       313 L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~-g~~p~~~~~~~~l~~l~l~~N~l~~~~~  371 (766)
                      +++|.+++..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++..+
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  487 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  487 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence            9999999999999999999999999999998 6899999999999999999999886433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=7.4e-29  Score=285.38  Aligned_cols=267  Identities=22%  Similarity=0.223  Sum_probs=179.9

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      +++.|...+..|..+.++++|++|+|++|.+.+..|+.|+++++|++|||++|.+++..|..|+++++|++|+|++|.++
T Consensus        32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence            45555544445566777777777777777777777777777777777777777777666666777777777777777777


Q ss_pred             C-CCCcccCCCCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCC-CC----------------------
Q 004232          180 N-TIPNWFDSLPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPD-LS----------------------  234 (766)
Q Consensus       180 ~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~----------------------  234 (766)
                      + ..|..|+++++|++|++++|++.+.+| ..+.++++|++|++++|.+++.+|. +.                      
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  191 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF  191 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHH
T ss_pred             ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhh
Confidence            5 356677777777777777777444444 4677777777777777777765442 22                      


Q ss_pred             --CCCCCCEEECCCCCCCCCC----C--CCCC------------------------------------------------
Q 004232          235 --SLGSLNVLNLSDNKLDSNL----P--KLPR------------------------------------------------  258 (766)
Q Consensus       235 --~l~~L~~L~ls~N~l~~~~----p--~~~~------------------------------------------------  258 (766)
                        .+++|++|++++|++++..    +  ....                                                
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~  271 (549)
T 2z81_A          192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP  271 (549)
T ss_dssp             HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred             HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc
Confidence              3678888888888887631    0  0111                                                


Q ss_pred             ---------------------------------------CCcEEEccCCcCccCCcccc-cCCCCCCEEEccCCcCCCCC
Q 004232          259 ---------------------------------------GLVMAFLSNNSFSGEIPKQY-GQLNQLQQLDMSFNALRGMP  298 (766)
Q Consensus       259 ---------------------------------------~l~~l~ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~  298 (766)
                                                             .++.+++++|+++ .+|..+ ..+++|+.|++++|++++..
T Consensus       272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~  350 (549)
T 2z81_A          272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY  350 (549)
T ss_dssp             CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc
Confidence                                                   2334444444443 344444 45777777777777777755


Q ss_pred             c---cccCCCCCCCeEEeecCcCcccCC--ccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          299 P---PAIFSLPNISDLNLASNKFSGSLP--KNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       299 ~---~~~~~l~~L~~L~L~~N~l~g~~p--~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      |   ..+..+++|+.|+|++|++++..+  ..+..+++|+.||+++|+++ .+|..+..+++|+.|++++|.++.
T Consensus       351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC
T ss_pred             ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc
Confidence            3   235667777777777777765422  34667777888888888777 567777777778888888877763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=266.27  Aligned_cols=251  Identities=20%  Similarity=0.205  Sum_probs=213.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|+++++|++|+|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            47999999999999887778999999999999999999888889999999999999999999766666999999999999


Q ss_pred             cCccCCCCCC-ccccCCCCCCEEEccCCc-cCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCC---CCCcEEEccCCcCc
Q 004232          198 RNNKLAGPFP-SSIQRISTLSDLDLSKNA-ISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKLP---RGLVMAFLSNNSFS  271 (766)
Q Consensus       198 ~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~l~ls~N~l~  271 (766)
                      ++|++++..+ ..+..+++|++|++++|. +++..+ .+..+++|++|++++|.+++..|...   .+|+.+++++|+++
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999985444 478999999999999995 665544 48899999999999999988766543   46888999999997


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCccccC---CCCCCCeEEeecCcCcc----cCCccCCCCCCccEEeCcCCcccc
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIF---SLPNISDLNLASNKFSG----SLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~g----~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      ...+..+..+++|+.|++++|.+++.++..+.   ..+.++.++|++|.+++    .+|..+..+++|+.||+++|+++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            54444566789999999999999998765543   35678999999999886    47788889999999999999999 


Q ss_pred             CCCCC-CCCCCCCceeecCCCcCCCC
Q 004232          345 GLPSC-LSNESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       345 ~~p~~-~~~~~~l~~l~l~~N~l~~~  369 (766)
                      .+|.. +..+++|+.+++++|.+.+.
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            56665 58999999999999998863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.7e-29  Score=269.19  Aligned_cols=245  Identities=23%  Similarity=0.249  Sum_probs=171.5

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccC-ccCCCccCC-------CCCCCCEEEccCCcCCCCCCcc
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFL-FGSVPPKIS-------TMVKLQTLILDDNFFNNTIPNW  185 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~  185 (766)
                      ++++++|+.|++++|.+  .+|..+...  |++|+|++|.+ .+.+|..+.       ++++|++|+|++|.+++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            45556666666666666  556555444  66666666666 344555554       5666666666666666666665


Q ss_pred             c--CCCCCCCEEEccCccCCCCCCccccCC-----CCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCC----
Q 004232          186 F--DSLPSLTFLSMRNNKLAGPFPSSIQRI-----STLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNL----  253 (766)
Q Consensus       186 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~----  253 (766)
                      +  +.+++|++|+|++|++++. |..+..+     ++|++|+|++|++++..| .+..+++|++|++++|++.+.+    
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4  6666666777766666655 6655555     666677777666666554 3666666677777766655431    


Q ss_pred             ---CCCCCCCcEEEccCCcCcc--CC-cccccCCCCCCEEEccCCcCCCCCc-cccCCCCCCCeEEeecCcCcccCCccC
Q 004232          254 ---PKLPRGLVMAFLSNNSFSG--EI-PKQYGQLNQLQQLDMSFNALRGMPP-PAIFSLPNISDLNLASNKFSGSLPKNL  326 (766)
Q Consensus       254 ---p~~~~~l~~l~ls~N~l~~--~~-p~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~  326 (766)
                         +.-...|+.|++++|++++  .+ ...+..+++|+.|++++|++++.+| +.+..+++|+.|+|++|+++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence               1223456667777777763  22 2445688999999999999999775 45667899999999999998 788877


Q ss_pred             CCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          327 NCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       327 ~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      .  .+|+.||+++|++++. |. +..+++|+.+++++|.+++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6  7899999999999976 66 8889999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.1e-28  Score=256.90  Aligned_cols=230  Identities=25%  Similarity=0.239  Sum_probs=182.1

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCcc--CCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFG--SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      ++|++|+|++|.+....+..|.++++|++|+|++|.++.  ..|..+..+++|++|+|++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            578999999999976555568899999999999998873  33677778899999999999887 467778889999999


Q ss_pred             EccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          196 SMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       196 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      ++++|++++..+ ..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++.                    .
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~  166 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------F  166 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--------------------E
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--------------------c
Confidence            999999886655 5788888999999999988877665 67788888888877765430                    3


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCC
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNE  353 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~  353 (766)
                      +|..+..+++|+.|++++|++++.+|..+..+++|+.|+|++|++++..+..+..+.+|+.||+++|++++..|..+..+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            56667777788888888888888777777778888888888888876666677777888888888888888777777777


Q ss_pred             -CCCceeecCCCcCCC
Q 004232          354 -SDKRVVKFRGNCLSS  368 (766)
Q Consensus       354 -~~l~~l~l~~N~l~~  368 (766)
                       ++++.+++++|.+++
T Consensus       247 ~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          247 PSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTCCEEECTTCCEEC
T ss_pred             hccCCEEEccCCCeec
Confidence             378888888887765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.3e-27  Score=282.50  Aligned_cols=251  Identities=20%  Similarity=0.200  Sum_probs=227.3

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            68999999999999988889999999999999999999999999999999999999999999776678999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC-----CCCCcEEEccCCcCc
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL-----PRGLVMAFLSNNSFS  271 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~-----~~~l~~l~ls~N~l~  271 (766)
                      ++|++++..|..|+++++|++|+|++|.+++..|. +..+++|++|++++|.+++..+..     ...|+.+++++|+++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999988888999999999999999999988775 789999999999999998876641     267999999999999


Q ss_pred             cCCcccccCC---------------------------CCCCEEEccCCcCCCCCccccCCCCC--CCeEEeecCcCcccC
Q 004232          272 GEIPKQYGQL---------------------------NQLQQLDMSFNALRGMPPPAIFSLPN--ISDLNLASNKFSGSL  322 (766)
Q Consensus       272 ~~~p~~~~~l---------------------------~~L~~L~ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~g~~  322 (766)
                      +..|..|+.+                           ++|+.|++++|.+++.+|..+..++.  |+.|+|++|++++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            9888877654                           56788899999999999888888765  999999999999988


Q ss_pred             CccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          323 PKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       323 p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      |..+..+++|+.|++++|++++..|..+..+++++.+++++|...+
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            8999999999999999999999999999999999999998775543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=6.3e-28  Score=277.63  Aligned_cols=293  Identities=24%  Similarity=0.180  Sum_probs=209.4

Q ss_pred             CEEEEEeCCCCCCCCC--CCCccc-cccccCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecc
Q 004232           74 FITELKIIGDKPSNVG--NFDGFA-SANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLS  150 (766)
Q Consensus        74 ~v~~l~l~~~~~~~~~--~~~~~~-~~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls  150 (766)
                      .++.++++++.+.+..  .|.++. .....++.|...+..|..|+++++|++|+|++|.+.+..|..|+++++|++|+|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            5788888777654321  222211 1123466676666666788999999999999999988877789999999999999


Q ss_pred             cccCcc-CCCccCCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCEEEccCccCCCCCCccccC----------------
Q 004232          151 SNFLFG-SVPPKISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTFLSMRNNKLAGPFPSSIQR----------------  212 (766)
Q Consensus       151 ~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----------------  212 (766)
                      +|.+++ .+|..+.++++|++|++++|.+.+.+| ..|+++++|++|++++|++++.+|..+..                
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            999876 357788889999999999888555554 57888888888888888888777766543                


Q ss_pred             --------CCCCCEEEccCCccCCCC------------------------------------------------------
Q 004232          213 --------ISTLSDLDLSKNAISGSL------------------------------------------------------  230 (766)
Q Consensus       213 --------l~~L~~L~Ls~N~l~~~~------------------------------------------------------  230 (766)
                              +++|++|++++|++++..                                                      
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence                    556777777777766521                                                      


Q ss_pred             -----------------------------------------------------------CC-C-CCCCCCCEEECCCCCC
Q 004232          231 -----------------------------------------------------------PD-L-SSLGSLNVLNLSDNKL  249 (766)
Q Consensus       231 -----------------------------------------------------------p~-~-~~l~~L~~L~ls~N~l  249 (766)
                                                                                 |. + ..+++|++|++++|++
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l  346 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM  346 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence                                                                       00 0 2367888888988888


Q ss_pred             CCCCC------CCCCCCcEEEccCCcCccCCc--ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          250 DSNLP------KLPRGLVMAFLSNNSFSGEIP--KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       250 ~~~~p------~~~~~l~~l~ls~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                      ++.+|      .....|+.|++++|++++..+  ..++.+++|++|++++|+++++| ..+..+++|++|+|++|++++ 
T Consensus       347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~-  424 (549)
T 2z81_A          347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRV-  424 (549)
T ss_dssp             CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSC-
T ss_pred             ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-hhhcccccccEEECCCCCccc-
Confidence            77542      123567888888888876432  45777888888888888887544 456667777777777776652 


Q ss_pred             CCcc------------------CCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCCCc
Q 004232          322 LPKN------------------LNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNV  370 (766)
Q Consensus       322 ~p~~------------------~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~~~  370 (766)
                      +|..                  ...+++|+.|++++|+++ .+|. ...+++|+.|++++|.+++..
T Consensus       425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred             ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcC
Confidence            2221                  125778999999999998 6776 467888999999999988643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.5e-27  Score=253.30  Aligned_cols=226  Identities=20%  Similarity=0.205  Sum_probs=189.8

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEcc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN--TIPNWFDSLPSLTFLSMR  198 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~  198 (766)
                      +.++.++++++ .+|..+.  ++|++|+|++|+++...+..|.++++|++|+|++|.++.  ..|..+..+++|++|+|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45677777764 4555443  689999999999985545557899999999999999873  336677789999999999


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcc
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP--DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPK  276 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~  276 (766)
                      +|.++ .+|..+..+++|++|++++|.+++..+  .+..+++|++|++++|.++                     +..|.
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~  144 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------------------VAFNG  144 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE---------------------ECSTT
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC---------------------ccchh
Confidence            99988 477778899999999999999987664  4778888888887776554                     45667


Q ss_pred             cccCCCCCCEEEccCCcCCC-CCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCC
Q 004232          277 QYGQLNQLQQLDMSFNALRG-MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESD  355 (766)
Q Consensus       277 ~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~  355 (766)
                      .|+.+++|++|++++|.+++ ..|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            78889999999999999987 57778999999999999999999988999999999999999999999887778889999


Q ss_pred             CceeecCCCcCCCCcC
Q 004232          356 KRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       356 l~~l~l~~N~l~~~~~  371 (766)
                      |+.|++++|.+++..+
T Consensus       225 L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             CCEEECTTSCCCBCSS
T ss_pred             CCEeECCCCCCcccCH
Confidence            9999999999987544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=3e-27  Score=259.94  Aligned_cols=247  Identities=19%  Similarity=0.191  Sum_probs=203.4

Q ss_pred             CCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      .+.+|+.|++++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46889999999999977666668999999999999999998888899999999999999999999989999999999999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCC---------------
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRG---------------  259 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~---------------  259 (766)
                      +|++|+++...+..|..+++|++|+|++|.+++..|. +..+++|++|++++|++++........               
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            9999999965555579999999999999999988775 889999999999999998653332333               


Q ss_pred             ----CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEE
Q 004232          260 ----LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF  335 (766)
Q Consensus       260 ----l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L  335 (766)
                          ++.+++++|.++.. |.  ...++|+.|++++|++++.  +.+..+++|+.|+|++|.+++..|..+..+++|+.|
T Consensus       203 ~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                45555555555532 22  2246788888888888775  367788888888888888888778888888888888


Q ss_pred             eCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          336 DISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       336 ~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      ++++|++++ +|..+..+++|+.|++++|.++.
T Consensus       278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~  309 (390)
T 3o6n_A          278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH  309 (390)
T ss_dssp             ECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC
T ss_pred             ECCCCcCcc-cCcccCCCCCCCEEECCCCccee
Confidence            888888875 56666777888888888887763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.8e-27  Score=250.08  Aligned_cols=234  Identities=23%  Similarity=0.228  Sum_probs=192.6

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCc-CCCCCCcccCCCCCCCEE
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF-FNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L  195 (766)
                      .++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|. +....|..|.++++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3589999999999999888899999999999999999998889999999999999999997 777778899999999999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCc
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFS  271 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~  271 (766)
                      ++++|++++..|..+..+++|++|+|++|.+++..+. +..+++|++|++++|++++..+..   ...|+.+++++|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            9999999988889999999999999999999987765 788999999999999988655542   356778888888888


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCC
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS  351 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~  351 (766)
                      +..|..|+.+++|+.|++++|++++.++..+..+++|+.|+|++|.+....+.. .....++.++.+.|.+.+..|..+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence            777888888888888888888888877777778888888888888877543321 1112244455666777777776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.7e-27  Score=263.63  Aligned_cols=220  Identities=24%  Similarity=0.262  Sum_probs=199.6

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .+++|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++
T Consensus        81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            56777766666788999999999999999999999999999999999999999999877778999999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL--  256 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~--  256 (766)
                      ...+..|.++++|++|+|++|+..+.+| ..|..+++|++|+|++|++++ +|.+..+++|++|+|++|.+++..|..  
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  239 (452)
T 3zyi_A          161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFH  239 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred             eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCccccc
Confidence            8888899999999999999955444444 568999999999999999986 578999999999999999999876653  


Q ss_pred             -CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcc
Q 004232          257 -PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG  320 (766)
Q Consensus       257 -~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g  320 (766)
                       ..+|+.|++++|++++..|..|..+++|+.|+|++|++++.++..+..+++|+.|+|++|.+..
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence             3579999999999999999999999999999999999999999999999999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.9e-29  Score=265.54  Aligned_cols=228  Identities=23%  Similarity=0.322  Sum_probs=196.2

Q ss_pred             cccccccCCCCCCEEecccccc-cccCCcccc-------CCCCCCEEecccccCccCCCccC--CCCCCCCEEEccCCcC
Q 004232          109 SFVTTLARLTSLRVLSLVSLGI-WGSLPDKIH-------RLYSLEYLDLSSNFLFGSVPPKI--STMVKLQTLILDDNFF  178 (766)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~~~-------~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l  178 (766)
                      .+|..+...  |+.|+|++|.+ .+.+|..+.       ++++|++|+|++|++++.+|..+  ..+++|++|+|++|++
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            456656554  89999999999 567888776       89999999999999999999887  8999999999999999


Q ss_pred             CCCCCcccCCC-----CCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCC---CCC--CCCCCCCEEECCCCC
Q 004232          179 NNTIPNWFDSL-----PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL---PDL--SSLGSLNVLNLSDNK  248 (766)
Q Consensus       179 ~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~--~~l~~L~~L~ls~N~  248 (766)
                      ++. |..++.+     ++|++|+|++|++++..|..|+.+++|++|+|++|++.+.+   +.+  ..+++|++|++++|+
T Consensus       134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            987 8888877     99999999999999988899999999999999999987752   233  889999999999999


Q ss_pred             CCCC--CC-C---CCCCCcEEEccCCcCccCCc-ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          249 LDSN--LP-K---LPRGLVMAFLSNNSFSGEIP-KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       249 l~~~--~p-~---~~~~l~~l~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                      +++.  ++ .   ....|+.|++++|++++..| ..+..+++|++|+|++|+++.++ ..+.  ++|+.|+|++|++++.
T Consensus       213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SSCC--SEEEEEECCSSCCCSC
T ss_pred             CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-hhcc--CCceEEECCCCCCCCC
Confidence            9842  12 1   23689999999999999875 56777899999999999999554 4555  8999999999999976


Q ss_pred             CCccCCCCCCccEEeCcCCcccc
Q 004232          322 LPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       322 ~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                       |. +..+++|+.|++++|++++
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCC
Confidence             66 8899999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=3.7e-26  Score=255.95  Aligned_cols=215  Identities=23%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      ++++++|++|+|++|.+++. |  ++++++|++|+|++|++++ +|  ++.+++|++|++++|++++. |  ++++++|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~  151 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLT  151 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCC
T ss_pred             cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCC
Confidence            55666666666666666553 2  5666666666666666654 33  56666666666666666652 2  55566666


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      +|++++|+..+.+  .+..+++|+.|++++|++++. | +..+++|+.|++++|++++..-.-...|+.+++++|++++ 
T Consensus       152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-
T ss_pred             EEECCCCCccccc--ccccCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-
Confidence            6666666444444  255566666666666666552 3 5556666666666666655421223455666666666665 


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCC-------CCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCC
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLP-------NISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGL  346 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~  346 (766)
                      +|  ++.+++|+.|++++|++++.++..+.++.       +|+.|++++|.+.|.+|  +..+++|+.|++++|.+.+.+
T Consensus       227 ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred             cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence            44  55666666666666666665544433332       33444444444444443  223344444444444443333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.2e-26  Score=271.33  Aligned_cols=134  Identities=28%  Similarity=0.276  Sum_probs=122.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      +++++|+|++|.|++..|.+|.++++|++|||++|+|++..|..|.+|++|++|+|++|++++..|.+|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999988899999999999999999999888889999999999999999999888889999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCC-CCC-CCCCCCCCEEECCCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGS-LPD-LSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~-~~~l~~L~~L~ls~N~l~~  251 (766)
                      ++|++++..+..|+++++|++|+|++|.+++. +|. +..+++|++|++++|++++
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            99999988778899999999999999999864 444 6789999999999987743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=259.19  Aligned_cols=220  Identities=22%  Similarity=0.256  Sum_probs=199.0

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++.|.+....+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++
T Consensus        70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            46666666666678999999999999999999998899999999999999999999777778999999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLP-  257 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~-  257 (766)
                      ...+..|.++++|++|+|++|+..+.+| ..|.++++|++|+|++|+++ .+|.+..+++|++|+|++|++++..|... 
T Consensus       150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhc
Confidence            8888899999999999999955444444 57899999999999999998 56789999999999999999998777543 


Q ss_pred             --CCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcc
Q 004232          258 --RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG  320 (766)
Q Consensus       258 --~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g  320 (766)
                        .+|+.|+|++|++++..|..|..+++|+.|+|++|++++.++..|..+++|+.|+|++|.+..
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence              578999999999999999999999999999999999999999999999999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2.9e-26  Score=247.85  Aligned_cols=242  Identities=23%  Similarity=0.300  Sum_probs=178.7

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      +.++++|++|+|++|.+.. + +.|.++++|++|+|++|.+.+ +|. +..+++|++|++++|.....++. +..+++|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~  158 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN  158 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC
T ss_pred             hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCc
Confidence            7788888888888888765 3 358888888888888888864 343 77888888888888866554443 77888888


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCcEEEccCCcCcc
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLP-KLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~l~ls~N~l~~  272 (766)
                      +|++++|.+.+..+  +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ .....|+.+++++|++++
T Consensus       159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~  235 (347)
T 4fmz_A          159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD  235 (347)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC
Confidence            88888888775433  7778888888888888775443 7777788888888887766543 123567778888888776


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCC
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN  352 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~  352 (766)
                      ..+  +..+++|+.|++++|.+++.  +.+..+++|+.|++++|++++.  +.+..+++|+.|++++|++++..|..+..
T Consensus       236 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          236 LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            444  77778888888888887775  3577778888888888877753  34667777888888888887777777777


Q ss_pred             CCCCceeecCCCcCCCC
Q 004232          353 ESDKRVVKFRGNCLSSN  369 (766)
Q Consensus       353 ~~~l~~l~l~~N~l~~~  369 (766)
                      +++|+.+++++|.+++.
T Consensus       310 l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CTTCSEEECCSSSCCCC
T ss_pred             cccCCEEEccCCccccc
Confidence            77788888888877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.4e-26  Score=248.51  Aligned_cols=279  Identities=20%  Similarity=0.273  Sum_probs=230.2

Q ss_pred             CCEEEEEeCCCCCCCCCCCCcccc-ccccCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEeccc
Q 004232           73 NFITELKIIGDKPSNVGNFDGFAS-ANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSS  151 (766)
Q Consensus        73 ~~v~~l~l~~~~~~~~~~~~~~~~-~~~~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~  151 (766)
                      ..++.+++.+..+.....+.++.. ....++.|... .+ +.+.++++|++|+|++|.+.+.. . +..+++|++|++++
T Consensus        66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~-~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DI-SALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGA  141 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CC-GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTT
T ss_pred             CCccEEEccCCccccchhhhcCCcCCEEEccCCccc-Cc-hHHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCC
Confidence            357788887776554333322111 12245555433 34 36999999999999999997653 3 99999999999999


Q ss_pred             ccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC
Q 004232          152 NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP  231 (766)
Q Consensus       152 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  231 (766)
                      |...+.++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++.. . +..+++|+.|++++|.+++..+
T Consensus       142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~  216 (347)
T 4fmz_A          142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDITP  216 (347)
T ss_dssp             CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCCch
Confidence            97765555 49999999999999999986544  889999999999999998643 3 8899999999999999997665


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCC-CCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCe
Q 004232          232 DLSSLGSLNVLNLSDNKLDSNLP-KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISD  310 (766)
Q Consensus       232 ~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~  310 (766)
                       +..+++|++|++++|.+++..+ ....+|+.+++++|.+++.  ..+..+++|+.|++++|++++.  +.+..+++|+.
T Consensus       217 -~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~  291 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS  291 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             -hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence             8899999999999999987654 2246799999999999874  4689999999999999999997  35889999999


Q ss_pred             EEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          311 LNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       311 L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      |+|++|++++..|..+..+++|+.|++++|++++..|  +..+++|+.+++++|.++
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999989999999999999999999998777  788999999999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=9.3e-26  Score=252.51  Aligned_cols=221  Identities=29%  Similarity=0.423  Sum_probs=114.1

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .++++++|++|++++|.+.+ +|..+   .+|++|+|++|++++ +| .+.++++|++|++++|++++ +|...   ++|
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L  217 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL  217 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred             ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence            35555555555555555543 34322   355555555555554 33 35555555555555555554 33221   355


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~  272 (766)
                      ++|++++|+++ .+|. ++.+++|++|++++|++++. |.  .+++|++|++++|++++ +|..+..++.+++++|++++
T Consensus       218 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          218 ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSE
T ss_pred             cEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCc
Confidence            55555555555 4442 55556666666666665542 22  12455555555555554 34444555555555555554


Q ss_pred             --CCcccccCCCCCCEEEccCCcCCCCCccccCCC-CCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCC
Q 004232          273 --EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSL-PNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC  349 (766)
Q Consensus       273 --~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~  349 (766)
                        .+|      ++|+.|++++|++++.+     .+ ++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|. 
T Consensus       292 l~~~~------~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-  354 (454)
T 1jl5_A          292 LSELP------PNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-  354 (454)
T ss_dssp             ESCCC------TTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred             ccCcC------CcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence              122      23444444444443321     12 356666666666664 4443   355666666666666 3444 


Q ss_pred             CCCCCCCceeecCCCcCCC
Q 004232          350 LSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       350 ~~~~~~l~~l~l~~N~l~~  368 (766)
                        .+++++.+++++|.+++
T Consensus       355 --~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             --CCTTCCEEECCSSCCSS
T ss_pred             --hhhhccEEECCCCCCCc
Confidence              24556666666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=7.4e-26  Score=253.52  Aligned_cols=238  Identities=21%  Similarity=0.176  Sum_probs=194.9

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .++.+++|++|+|++|.+++. |  ++.+++|++|+|++|.+++. |  ++++++|++|+|++|++++ +|  ++.+++|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            578889999999999998874 4  88999999999999999864 4  8899999999999999987 44  8899999


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~  272 (766)
                      ++|++++|++++. |  ++.+++|++|++++|...+.+ .+..+++|++|++++|++++....-...|+.+++++|++++
T Consensus       130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC
T ss_pred             CEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCe
Confidence            9999999999874 3  788899999999999776666 57888999999999999988432334678899999999987


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCC-------CccEEeCcCCccccC
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGG-------KLVFFDISNNKLTGG  345 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~-------~L~~L~ls~N~l~g~  345 (766)
                      .   .++.+++|+.|++++|++++++   +..+++|+.|++++|++++..+..+..+.       +|+.|++++|.+.|.
T Consensus       206 ~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~  279 (457)
T 3bz5_A          206 L---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY  279 (457)
T ss_dssp             C---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             e---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence            5   3888999999999999999854   77889999999999999986655555544       566777788877777


Q ss_pred             CCCCCCCCCCCceeecCCCcCCCCcC
Q 004232          346 LPSCLSNESDKRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       346 ~p~~~~~~~~l~~l~l~~N~l~~~~~  371 (766)
                      +|  ++.+++|+.+++++|.+.+..+
T Consensus       280 ~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          280 FQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             EE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             cc--ccccccCCEEECCCCcccceec
Confidence            77  4577888999999888766544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.5e-26  Score=241.31  Aligned_cols=224  Identities=20%  Similarity=0.237  Sum_probs=185.3

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      +.++.+++++. .+|..+  .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            46777777775 456543  578999999999999877788999999999999999999888999999999999999999


Q ss_pred             c-CCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc
Q 004232          201 K-LAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       201 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      + ++...|..+..+++|++|+|++|.+++..|. +..+++|++|++++|++++                     ..+..|
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~~  149 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------------LPDDTF  149 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---------------------cCHhHh
Confidence            7 7777688899999999999999999987665 7888999999988887764                     334456


Q ss_pred             cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCce
Q 004232          279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRV  358 (766)
Q Consensus       279 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~  358 (766)
                      +.+++|+.|++++|++++.++..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.
T Consensus       150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence            77788888888888888877777888888888888888888777888888888888888888888766666777888888


Q ss_pred             eecCCCcCCC
Q 004232          359 VKFRGNCLSS  368 (766)
Q Consensus       359 l~l~~N~l~~  368 (766)
                      +++++|.+.+
T Consensus       230 L~l~~N~~~c  239 (285)
T 1ozn_A          230 LRLNDNPWVC  239 (285)
T ss_dssp             EECCSSCEEC
T ss_pred             EeccCCCccC
Confidence            8888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=8.5e-26  Score=254.43  Aligned_cols=236  Identities=27%  Similarity=0.367  Sum_probs=112.5

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      ++++++|++|+|++|.+.+..|  +.++++|++|+|++|.+.+ +| .+..+++|++|+++ |.+.+..  .+.++++|+
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~  180 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLE  180 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCC
T ss_pred             hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCC
Confidence            4455555555555554443322  4455555555555554442 22 13333333333332 1122111  144555555


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCc
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFS  271 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~  271 (766)
                      +|++++|++++.  ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+++. +.+  ...|+.+++++|.++
T Consensus       181 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred             EEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccc
Confidence            555555555432  234555555555555555554433 44455555555555555432 111  234555555555555


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCC
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS  351 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~  351 (766)
                      +..|  +..+++|+.|++++|.+++.++  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++..|  +.
T Consensus       257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred             cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence            4333  5555555555555555555443  4455555555555555554322  4445555555555555554443  34


Q ss_pred             CCCCCceeecCCCcCCC
Q 004232          352 NESDKRVVKFRGNCLSS  368 (766)
Q Consensus       352 ~~~~l~~l~l~~N~l~~  368 (766)
                      .+++|+.|++++|.+++
T Consensus       329 ~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             GCTTCCEEECCSSCCCC
T ss_pred             cCccCCEeECCCCccCC
Confidence            45555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=9.8e-26  Score=253.91  Aligned_cols=248  Identities=26%  Similarity=0.301  Sum_probs=147.7

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      ++.|... .++. +.++++|++|+|++|.+.+. | .+.++++|++|+++ |.+.+. + .+.++++|++|++++|.+++
T Consensus       119 L~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          119 LFNNQIT-DIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             CCSSCCC-CCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCC-CChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCC
Confidence            4444333 3343 89999999999999998763 3 36677777766665 344332 2 26666666666666666654


Q ss_pred             CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCC
Q 004232          181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-LPRG  259 (766)
Q Consensus       181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-~~~~  259 (766)
                      .  ..+..+++|++|++++|++++..|  ++.+++|+.|++++|.+++ ++.+..+++|++|++++|.+++..+- -...
T Consensus       192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  266 (466)
T 1o6v_A          192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTK  266 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence            3  235666666666666666665443  5556666666666666654 34455566666666666666554331 1244


Q ss_pred             CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          260 LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      |+.+++++|.+++..|  +..+++|+.|++++|++++.++  +..+++|+.|+|++|++++..|  +..+++|+.|++++
T Consensus       267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN  340 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred             CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence            5666666666665333  5556666666666666665544  4556666666666666655444  44555666666666


Q ss_pred             CccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          340 NKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       340 N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      |++++.  ..+..+++|+.+++++|.+++
T Consensus       341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          341 NKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             CccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            666543  245555566666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-27  Score=269.70  Aligned_cols=232  Identities=24%  Similarity=0.247  Sum_probs=169.9

Q ss_pred             CCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      .+++|+.|+|++|.+.+..|..|+++++|++|+|++|.+++.+|  |..+++|++|+|++|.+++..+     .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34489999999999998888899999999999999999987665  8999999999999998885432     3889999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCCC----CCCCcEEEccCCcC
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKL----PRGLVMAFLSNNSF  270 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~~----~~~l~~l~ls~N~l  270 (766)
                      ++++|.+++..+.   .+++|+.|+|++|.+++.+| .++.+++|++|+|++|.+++.+|..    ...|+.|+|++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999876554   35788999999999988766 4778888888888888887654431    24566667777766


Q ss_pred             ccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccc-cCCCCC
Q 004232          271 SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT-GGLPSC  349 (766)
Q Consensus       271 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~-g~~p~~  349 (766)
                      ++..+  +..+++|+.|+|++|.+++.+|. +..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.++ +.+|.+
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            65422  23466677777777777665553 6666667777777777664 5656666666677777776666 455555


Q ss_pred             CCCCCCCceeec
Q 004232          350 LSNESDKRVVKF  361 (766)
Q Consensus       350 ~~~~~~l~~l~l  361 (766)
                      +..++.++.+++
T Consensus       258 ~~~l~~L~~l~~  269 (487)
T 3oja_A          258 FSKNQRVQTVAK  269 (487)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HHhCCCCcEEec
Confidence            555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.1e-25  Score=251.97  Aligned_cols=241  Identities=22%  Similarity=0.262  Sum_probs=195.4

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCC-------------CEEecccccCccCCCccCCCCCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSL-------------EYLDLSSNFLFGSVPPKISTMVK  167 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L-------------~~L~Ls~N~l~~~~p~~~~~l~~  167 (766)
                      ++.|.. +.+|+++++|++|++|++++|.+.|.+|..++++.+|             ++|++++|.+++ +|..   .++
T Consensus        18 l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~   92 (454)
T 1jl5_A           18 RHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPH   92 (454)
T ss_dssp             -----------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTT
T ss_pred             cccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCC
Confidence            344444 7789999999999999999999999999999999875             999999999986 5542   378


Q ss_pred             CCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCC
Q 004232          168 LQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDN  247 (766)
Q Consensus       168 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N  247 (766)
                      |++|++++|.+++ +|..   +++|++|++++|++++ +|..   .++|++|++++|++++ +|.++.+++|++|++++|
T Consensus        93 L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           93 LESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             CSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSS
T ss_pred             CCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCC
Confidence            9999999999997 7754   4899999999999986 3432   2789999999999997 678999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCC
Q 004232          248 KLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN  327 (766)
Q Consensus       248 ~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~  327 (766)
                      ++++ +|..+.+|+.+++++|++++ +| .++.+++|+.|++++|++++.+. .   .++|+.|++++|.++ .+|. +.
T Consensus       164 ~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-~---~~~L~~L~l~~n~l~-~lp~-~~  234 (454)
T 1jl5_A          164 SLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-L---PLSLESIVAGNNILE-ELPE-LQ  234 (454)
T ss_dssp             CCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-C---CTTCCEEECCSSCCS-SCCC-CT
T ss_pred             cCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-C---cCcccEEECcCCcCC-cccc-cC
Confidence            9987 67777899999999999997 66 69999999999999999998654 2   258999999999998 7784 88


Q ss_pred             CCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          328 CGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       328 ~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      .+++|+.|++++|++++ +|..   .++++.+++++|.+++
T Consensus       235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred             CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence            89999999999999985 5553   3678999999998886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=8.8e-28  Score=256.44  Aligned_cols=238  Identities=23%  Similarity=0.248  Sum_probs=182.4

Q ss_pred             ccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 004232          112 TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS  191 (766)
Q Consensus       112 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  191 (766)
                      ..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|  +..+++|++|+|++|.+++..     ..++
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~  100 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPS  100 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCC
Confidence            445667789999999999988888889999999999999999886554  888999999999999887533     3488


Q ss_pred             CCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-C---CCCCcEEEcc
Q 004232          192 LTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPK-L---PRGLVMAFLS  266 (766)
Q Consensus       192 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~-~---~~~l~~l~ls  266 (766)
                      |++|++++|++++..+..   +++|++|++++|.+++..+ .+..+++|++|++++|.+++..+. +   ...|+.|+++
T Consensus       101 L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          101 IETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            999999999988655443   5778999999999988766 477788899999998888765443 1   2567778888


Q ss_pred             CCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccc-cC
Q 004232          267 NNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT-GG  345 (766)
Q Consensus       267 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~-g~  345 (766)
                      +|.+++. | ....+++|+.|++++|++++.++. +..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.++ +.
T Consensus       178 ~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          178 YNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             TSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             CCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcC
Confidence            8887754 2 223477788888888888776654 777788888888888877 46777777778888888888877 66


Q ss_pred             CCCCCCCCCCCceeecCC
Q 004232          346 LPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       346 ~p~~~~~~~~l~~l~l~~  363 (766)
                      +|..+..++.++.+++.+
T Consensus       254 ~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          254 LRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhccccceEEECCC
Confidence            666666677777777663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-25  Score=256.87  Aligned_cols=285  Identities=27%  Similarity=0.306  Sum_probs=209.2

Q ss_pred             CCCccCCCCCCCCCCCC---CccceEecCCCEEEEEeCCCCCCCCCCCCccccccccCCCcccCCcccccccCCCCCCEE
Q 004232           47 LEIWINHGADFCYISSS---TQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVL  123 (766)
Q Consensus        47 l~~W~~~~~~~C~~~~~---~~~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~L~~L  123 (766)
                      .++|... .+||.|.+.   -.....|....++.+++.++.+......-........+++|.+ ..+|.   .+++|++|
T Consensus        12 w~~W~~~-~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l-~~lp~---~l~~L~~L   86 (622)
T 3g06_A           12 WSAWRRA-APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNL-TSLPA---LPPELRTL   86 (622)
T ss_dssp             HHHHHHT-CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCC-SCCCC---CCTTCCEE
T ss_pred             HHHHHhc-CCcchhccccccCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCC-CCCCC---cCCCCCEE
Confidence            4568654 578877320   0011234344577888877665432210001111223444543 34555   57888888


Q ss_pred             ecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCC
Q 004232          124 SLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA  203 (766)
Q Consensus       124 ~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  203 (766)
                      +|++|.+++ +|.   .+++|++|+|++|++++ +|.   .+++|+.|+|++|++++ +|..   +++|++|+|++|+++
T Consensus        87 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           87 EVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             EECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             EcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence            888888864 555   67888888888888875 454   56788888888888875 5543   488889999999888


Q ss_pred             CCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCC
Q 004232          204 GPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQ  283 (766)
Q Consensus       204 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~  283 (766)
                      + +|.   .+++|+.|++++|.+++ +|  ..+++|+.|++++|.+++ +|..+.+|..|++++|.++. +|.   .+++
T Consensus       155 ~-l~~---~~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~-l~~---~~~~  222 (622)
T 3g06_A          155 S-LPA---LPSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPA---LPSG  222 (622)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CCC---CCTT
T ss_pred             C-cCC---ccCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccc-cCC---CCCC
Confidence            5 454   34678888999998886 44  556889999999999986 66667889999999999984 554   3578


Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCC
Q 004232          284 LQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       284 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~  363 (766)
                      |+.|++++|++++++    ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|++++
T Consensus       223 L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            999999999999866    45689999999999998 5676   5678999999999999 7888899999999999999


Q ss_pred             CcCCCC
Q 004232          364 NCLSSN  369 (766)
Q Consensus       364 N~l~~~  369 (766)
                      |.+++.
T Consensus       294 N~l~~~  299 (622)
T 3g06_A          294 NPLSER  299 (622)
T ss_dssp             CCCCHH
T ss_pred             CCCCCc
Confidence            998853

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-26  Score=250.05  Aligned_cols=247  Identities=19%  Similarity=0.180  Sum_probs=208.2

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .+++|...+..+..+.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus        58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  137 (353)
T 2z80_A           58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK  137 (353)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred             ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence            45555544444458999999999999999999999999999999999999999998765556999999999999999999


Q ss_pred             CCCC-cccCCCCCCCEEEccCc-cCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-
Q 004232          180 NTIP-NWFDSLPSLTFLSMRNN-KLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPK-  255 (766)
Q Consensus       180 ~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~-  255 (766)
                      ...+ ..|.++++|++|++++| .+++..|..+..+++|++|++++|.+++..| .+..+++|++|++++|.++...+. 
T Consensus       138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  217 (353)
T 2z80_A          138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF  217 (353)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH
T ss_pred             ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh
Confidence            6544 48999999999999999 4776677889999999999999999998766 488999999999999998643322 


Q ss_pred             --CCCCCcEEEccCCcCccCCccccc---CCCCCCEEEccCCcCCCC----CccccCCCCCCCeEEeecCcCcccCCcc-
Q 004232          256 --LPRGLVMAFLSNNSFSGEIPKQYG---QLNQLQQLDMSFNALRGM----PPPAIFSLPNISDLNLASNKFSGSLPKN-  325 (766)
Q Consensus       256 --~~~~l~~l~ls~N~l~~~~p~~~~---~l~~L~~L~ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~g~~p~~-  325 (766)
                        ...+|+.+++++|++++..+..+.   ....++.+++++|.+++.    +|..+..+++|+.|+|++|+++ .+|.. 
T Consensus       218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence              246899999999999987665443   467789999999998873    5667889999999999999999 56665 


Q ss_pred             CCCCCCccEEeCcCCccccCCC
Q 004232          326 LNCGGKLVFFDISNNKLTGGLP  347 (766)
Q Consensus       326 ~~~~~~L~~L~ls~N~l~g~~p  347 (766)
                      +..+++|+.|++++|.+++..|
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCC
Confidence            5889999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=8.1e-25  Score=227.88  Aligned_cols=181  Identities=26%  Similarity=0.310  Sum_probs=111.5

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            45677777777776666566777777777777777776544445566777777777777766655566666666777777


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcc
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPK  276 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~  276 (766)
                      ++|++++..|..|..+++|++|+|++|.+++..+. +..+++|++|++++|++++                     ..+.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------------~~~~  175 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR---------------------VPEG  175 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------CCTT
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---------------------eChh
Confidence            76666665555666666666666666666654443 4555555555555544432                     2233


Q ss_pred             cccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          277 QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       277 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      .|..+++|+.|++++|++++.++..+..+++|+.|+|++|.+.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            4555556666666666666555555555555666666655554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.5e-25  Score=232.44  Aligned_cols=205  Identities=25%  Similarity=0.226  Sum_probs=143.0

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46888888888888877778888888888888888888777778888888888888888888777788888888888888


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCC-CC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCc
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGS-LP-DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP  275 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p  275 (766)
                      ++|++++..+..+..+++|++|+|++|.+++. +| .+..+++|++|++++|++++                     ..+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~---------------------~~~  166 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---------------------IYC  166 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE---------------------ECG
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc---------------------CCH
Confidence            88888876666777788888888888877652 23 36666667666666665543                     223


Q ss_pred             ccccCCCCCC----EEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          276 KQYGQLNQLQ----QLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       276 ~~~~~l~~L~----~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      ..|..+.+|+    .|++++|.+++.++..+. ..+|+.|+|++|++++..+..+..+++|+.|++++|.+++
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            3333333333    566666666665554333 3356666666666665444445556666666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-24  Score=227.89  Aligned_cols=214  Identities=20%  Similarity=0.246  Sum_probs=186.6

Q ss_pred             cCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccC
Q 004232          133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQR  212 (766)
Q Consensus       133 ~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  212 (766)
                      .+|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.+
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            3555443  57999999999999877779999999999999999999888889999999999999999999888889999


Q ss_pred             CCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccC
Q 004232          213 ISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF  291 (766)
Q Consensus       213 l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~  291 (766)
                      +++|++|++++|.+++..+ .+..+++|++|++++|.+++.                    .+|..|+.+++|+.|++++
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------------------KLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------------CCCGGGGGCTTCCEEECCS
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------------------cCchhhccCCCCCEEECCC
Confidence            9999999999999998766 488889999998888876531                    3578899999999999999


Q ss_pred             CcCCCCCccccCCCCCCC----eEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          292 NALRGMPPPAIFSLPNIS----DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       292 N~l~~~~~~~~~~l~~L~----~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      |++++.++..+..+++|+    .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.+++++|.+.
T Consensus       159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            999999988888888877    899999999966555554 458999999999999877777899999999999999998


Q ss_pred             CC
Q 004232          368 SN  369 (766)
Q Consensus       368 ~~  369 (766)
                      +.
T Consensus       238 c~  239 (276)
T 2z62_A          238 CS  239 (276)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=4e-25  Score=230.43  Aligned_cols=210  Identities=23%  Similarity=0.309  Sum_probs=162.1

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+ + +.+..+++|++|+|++|.+++..|..|+++++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            35567778888888877753 33 47778888888888888765 2 367778888888888888877777777778888


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCc
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFS  271 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~  271 (766)
                      ++|+|++|++++..|..|..+++|++|+|++|.+++.++. +..+++|++|++++|+++                     
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------  170 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ---------------------  170 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC---------------------
Confidence            8888888888776666677778888888888877766654 567777777777666554                     


Q ss_pred             cCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCC
Q 004232          272 GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS  351 (766)
Q Consensus       272 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~  351 (766)
                      +..+..|+.+++|+.|++++|++++.++..+..+++|+.|+|++|.+.+..|       .|+.++++.|+++|.+|.+++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccc
Confidence            3455667888999999999999999998888999999999999998886544       688889999999999999887


Q ss_pred             CCC
Q 004232          352 NES  354 (766)
Q Consensus       352 ~~~  354 (766)
                      .+.
T Consensus       244 ~~~  246 (272)
T 3rfs_A          244 SVA  246 (272)
T ss_dssp             CBC
T ss_pred             ccC
Confidence            654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=5e-26  Score=242.86  Aligned_cols=236  Identities=19%  Similarity=0.232  Sum_probs=205.7

Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 004232          119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR  198 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  198 (766)
                      .++.++++.+.+...++..+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|  |..+++|++|+|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            46667888888877666777888899999999999998888899999999999999999987665  9999999999999


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCccCCc
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSGEIP  275 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~~~p  275 (766)
                      +|++++..     ..++|++|++++|.+++..+.  .+++|++|++++|++++..+..   ...|+.|++++|.+++..|
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            99998532     348999999999999986654  3688999999999999876643   3679999999999999877


Q ss_pred             ccc-cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCC
Q 004232          276 KQY-GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNES  354 (766)
Q Consensus       276 ~~~-~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~  354 (766)
                      ..+ ..+++|++|++++|++++.++  ...+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            777 479999999999999998854  3458999999999999995 5556888999999999999999 5788899999


Q ss_pred             CCceeecCCCcCC
Q 004232          355 DKRVVKFRGNCLS  367 (766)
Q Consensus       355 ~l~~l~l~~N~l~  367 (766)
                      +++.+++++|.+.
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            9999999999886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1e-25  Score=254.52  Aligned_cols=215  Identities=20%  Similarity=0.241  Sum_probs=191.4

Q ss_pred             CCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEE
Q 004232          140 RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDL  219 (766)
Q Consensus       140 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  219 (766)
                      .+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  |+.+++|++|+|++|.+++..+     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34489999999999999888999999999999999999998766  9999999999999999986432     3899999


Q ss_pred             EccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCccCCccccc-CCCCCCEEEccCCcCC
Q 004232          220 DLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSGEIPKQYG-QLNQLQQLDMSFNALR  295 (766)
Q Consensus       220 ~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~  295 (766)
                      +|++|.+++.++.  .+++|+.|+|++|.+++..|..   ...|+.|+|++|.+++..|..+. .+++|+.|+|++|.++
T Consensus       105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            9999999987664  4689999999999999887754   36789999999999998888886 8999999999999999


Q ss_pred             CCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          296 GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       296 ~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      +.++  +..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++++.+++++|.+.
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            9854  44699999999999999975 5558889999999999999996 7888999999999999999876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1e-23  Score=219.49  Aligned_cols=201  Identities=24%  Similarity=0.309  Sum_probs=145.7

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      ++.+++++++++. +|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4568888888864 665553  6789999999998877667888888899999988888876666778888888888888


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      |++++..+..|..+++|++|+|++|.+++..+. +..+++|++|++++|.+++                     ..+..|
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------------~~~~~~  153 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---------------------LPKGVF  153 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc---------------------cCHhHc
Confidence            888876666777888888888888888766554 5667777777666665542                     223345


Q ss_pred             cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       279 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      +.+++|+.|++++|++++.++..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            666777777777777777776666677777777777777765544456666666666666666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1e-23  Score=221.80  Aligned_cols=201  Identities=24%  Similarity=0.319  Sum_probs=101.2

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      +.++++|+.+++++|+++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+.  +.+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            455566666666666654 3343332  4566666666666555555566666666666666655543221  4555555


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~  272 (766)
                      +|+|++|+++ .+|..+..+++|++|+|++|++++.++. +..+++|++|+|++|++++                     
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------------------  138 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------  138 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence            5555555555 4455555555555555555555544432 4444444444444443332                     


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcc
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKL  342 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l  342 (766)
                      ..+..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++ .+|..+....+|+.++|++|.+
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            22233344445555555555555444444444455555555555544 3444443344444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=4.2e-24  Score=227.19  Aligned_cols=228  Identities=22%  Similarity=0.271  Sum_probs=175.3

Q ss_pred             CCCCEEeccccccccc-CCc--cccCCCCCCEEecccccCccCCCccC--CCCCCCCEEEccCCcCCCCCC----cccCC
Q 004232          118 TSLRVLSLVSLGIWGS-LPD--KIHRLYSLEYLDLSSNFLFGSVPPKI--STMVKLQTLILDDNFFNNTIP----NWFDS  188 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~-~p~--~~~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~  188 (766)
                      ..++.|.+.++.+... +..  .+..+++|++|+|++|.+.+..|..+  ..+++|++|+|++|.+++..|    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3477888887766432 111  13345779999999999999999888  899999999999999998666    44568


Q ss_pred             CCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCC---CCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCcEE
Q 004232          189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGS---LPD--LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMA  263 (766)
Q Consensus       189 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~--~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l  263 (766)
                      +++|++|+|++|++++..|..+..+++|++|+|++|++.+.   .+.  +..+++|++|+|++|+++..           
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-----------  212 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-----------  212 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-----------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-----------
Confidence            99999999999999988888999999999999999998752   222  36788888888888877520           


Q ss_pred             EccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCC---CCCCeEEeecCcCcccCCccCCCCCCccEEeCcCC
Q 004232          264 FLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSL---PNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN  340 (766)
Q Consensus       264 ~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N  340 (766)
                             .+..+..++.+++|++|||++|++++..|+.+..+   ++|++|+|++|+|+ .+|..+.  ++|+.|||++|
T Consensus       213 -------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N  282 (310)
T 4glp_A          213 -------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN  282 (310)
T ss_dssp             -------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC
T ss_pred             -------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC
Confidence                   00111135677888888888888888876666666   68888899888888 6777664  68888999999


Q ss_pred             ccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          341 KLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       341 ~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      ++++. |. +..+++|+.|++++|+++.
T Consensus       283 ~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          283 RLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88863 33 5667888888999888864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.6e-23  Score=220.27  Aligned_cols=205  Identities=22%  Similarity=0.237  Sum_probs=177.5

Q ss_pred             cccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCC
Q 004232          137 KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL  216 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  216 (766)
                      .+.++++|+++++++|.++ .+|..+.  ++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+ . ..+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence            4788999999999999997 5776665  689999999999998888899999999999999999986433 2 788999


Q ss_pred             CEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCC
Q 004232          217 SDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG  296 (766)
Q Consensus       217 ~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~  296 (766)
                      ++|+|++|+++..+..+..+++|++|++++|++++                     ..|..|..+++|+.|+|++|++++
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~---------------------l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS---------------------LPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC---------------------CCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc---------------------cCHHHHcCCCCCCEEECCCCCCCc
Confidence            99999999998655557788888888887776653                     445678899999999999999999


Q ss_pred             CCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          297 MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       297 ~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      .++..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+++ .+|..+.....++.+++.+|.+..
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99998999999999999999999666667788999999999999999 788888888899999999998864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.91  E-value=7e-26  Score=259.74  Aligned_cols=177  Identities=14%  Similarity=0.099  Sum_probs=116.5

Q ss_pred             ceecCCceeEEEEE-ecCCceEEEEEccCC----------hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSS----------KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~----------~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ..+.|++|.++.++ +..|+.+|||++...          .....++|.+|+++|+++ .|+||+++++++.+.+     
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~-----  315 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQ-----  315 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSS-----
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECC-----
Confidence            35667777666654 446899999999653          123457799999999999 7999999999998764     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..||||||++||+|.+.|.+..+   ++..   +|+.||+.||+|+|++   +||||||||+|||+++++.+||+||
T Consensus       316 ---~~yLVMEyv~G~~L~d~i~~~~~---l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DF  383 (569)
T 4azs_A          316 ---SGWLVMEKLPGRLLSDMLAAGEE---IDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDF  383 (569)
T ss_dssp             ---EEEEEEECCCSEEHHHHHHTTCC---CCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCC
T ss_pred             ---EEEEEEecCCCCcHHHHHHhCCC---CCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeec
Confidence               79999999999999999986543   5543   4889999999999998   8999999999999999999999999


Q ss_pred             CCCcccccccccc----cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCc
Q 004232          638 GLSIVSEDINSVG----GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSV  684 (766)
Q Consensus       638 Gla~~~~~~~~~~----~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p  684 (766)
                      |+|+.........    ++    .++.. ...+..++|+||.|++++++.+|..+
T Consensus       384 GlAr~~~~~~~~~~t~vGTp~YmAPE~l-~g~~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          384 GSIVTTPQDCSWPTNLVQSFFVFVNELF-AENKSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             TTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred             ccCeeCCCCCccccCceechhhccHHHh-CCCCCCcccccccccchhhhccccch
Confidence            9997654321110    00    01100 12234578999999998888776443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.7e-24  Score=224.18  Aligned_cols=222  Identities=21%  Similarity=0.274  Sum_probs=188.7

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +.++..+++..+.+....  .+..+++|+.|++++|.+.. + +.+..+++|++|+|++|.+++.  ..+.++++|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            344556677777665543  36788999999999999863 3 4588999999999999999863  4789999999999


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCc
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP  275 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p  275 (766)
                      |++|++++..|..+..+++|++|+|++|++++.++. +..+++|++|++++|++++                     ..|
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------------~~~  150 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---------------------LPK  150 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCT
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc---------------------cCH
Confidence            999999988888889999999999999999987776 6888999998888877653                     445


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCC
Q 004232          276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESD  355 (766)
Q Consensus       276 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~  355 (766)
                      ..|+.+++|+.|++++|++++.++..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..|       .
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~  223 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------G  223 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------T
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------H
Confidence            567889999999999999999999889999999999999999999888888999999999999999986544       6


Q ss_pred             CceeecCCCcCCCCcCC
Q 004232          356 KRVVKFRGNCLSSNVQN  372 (766)
Q Consensus       356 l~~l~l~~N~l~~~~~~  372 (766)
                      ++.+++..|.++|.+|.
T Consensus       224 l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             THHHHHHHHHTGGGBBC
T ss_pred             HHHHHHHHHhCCCcccC
Confidence            88899999999986654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.3e-23  Score=211.53  Aligned_cols=195  Identities=17%  Similarity=0.228  Sum_probs=134.7

Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEeccccc-CccCCCccCCCCCCCCEEEccC-CcCCCCCCcccCCCCCCCEEE
Q 004232          119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNF-LFGSVPPKISTMVKLQTLILDD-NFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +|++|+|++|++++..+..|.++++|++|+|++|. +++..+..|.++++|++|+|++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78889999999888777788889999999999886 7766666788888888888888 888877777888888888888


Q ss_pred             ccCccCCCCCCccccCCCCCC---EEEccCC-ccCCCCCC-CCCCCCCC-EEECCCCCCCCCCCCCCCCCcEEEccCCcC
Q 004232          197 MRNNKLAGPFPSSIQRISTLS---DLDLSKN-AISGSLPD-LSSLGSLN-VLNLSDNKLDSNLPKLPRGLVMAFLSNNSF  270 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~-~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l  270 (766)
                      +++|++++ +|. +..+++|+   +|++++| .+++..+. +..+++|+ +|++++|+++. +|                
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~----------------  172 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ----------------  172 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC----------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC----------------
Confidence            88888876 665 77777777   8888888 77765554 66777777 77777776652 11                


Q ss_pred             ccCCcccccCCCCCCEEEccCCc-CCCCCccccCCC-CCCCeEEeecCcCcccCCccCCCCCCccEEeCcCC
Q 004232          271 SGEIPKQYGQLNQLQQLDMSFNA-LRGMPPPAIFSL-PNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNN  340 (766)
Q Consensus       271 ~~~~p~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N  340 (766)
                          +..|.. ++|+.|++++|+ ++++++..|..+ ++|+.|+|++|++++ +|..  .+.+|+.|+++++
T Consensus       173 ----~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          173 ----GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ----TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             ----HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence                111222 455555555553 555555555555 555555555555552 3322  3445555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=223.93  Aligned_cols=202  Identities=18%  Similarity=0.218  Sum_probs=157.9

Q ss_pred             CCCCCCEEecccccccccCCccc--cCCCCCCEEecccccCccCCC----ccCCCCCCCCEEEccCCcCCCCCCcccCCC
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKI--HRLYSLEYLDLSSNFLFGSVP----PKISTMVKLQTLILDDNFFNNTIPNWFDSL  189 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~--~~L~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  189 (766)
                      .+++|++|+|++|.+.+..|..+  .++++|++|+|++|.+++..|    ..+..+++|++|+|++|.+++..|..|+++
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            45679999999999999999998  999999999999999998665    455689999999999999999999999999


Q ss_pred             CCCCEEEccCccCCCC--C--CccccCCCCCCEEEccCCccCCCCCC----CCCCCCCCEEECCCCCCCCCCCCCCCCCc
Q 004232          190 PSLTFLSMRNNKLAGP--F--PSSIQRISTLSDLDLSKNAISGSLPD----LSSLGSLNVLNLSDNKLDSNLPKLPRGLV  261 (766)
Q Consensus       190 ~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~l~~L~~L~ls~N~l~~~~p~~~~~l~  261 (766)
                      ++|++|+|++|++.+.  +  +..+..+++|++|+|++|+++...+.    +..+++|++|+|++|++++..|       
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------  241 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------  241 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-------
Confidence            9999999999998752  2  23347899999999999999743321    4678899999999988876533       


Q ss_pred             EEEccCCcCccCCcccccCC---CCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCc
Q 004232          262 MAFLSNNSFSGEIPKQYGQL---NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS  338 (766)
Q Consensus       262 ~l~ls~N~l~~~~p~~~~~l---~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls  338 (766)
                                    ..+..+   ++|++|+|++|+++.+|. .+.  ++|+.|+|++|++++. |. +..+++|+.|+++
T Consensus       242 --------------~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~  302 (310)
T 4glp_A          242 --------------PSAPRCMWSSALNSLNLSFAGLEQVPK-GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLD  302 (310)
T ss_dssp             --------------SCCSSCCCCTTCCCEECCSSCCCSCCS-CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECS
T ss_pred             --------------hhHHhccCcCcCCEEECCCCCCCchhh-hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECc
Confidence                          333333   577777777777775443 332  6777777777777753 32 4556777777777


Q ss_pred             CCccc
Q 004232          339 NNKLT  343 (766)
Q Consensus       339 ~N~l~  343 (766)
                      +|+++
T Consensus       303 ~N~l~  307 (310)
T 4glp_A          303 GNPFL  307 (310)
T ss_dssp             STTTS
T ss_pred             CCCCC
Confidence            77775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=1.1e-21  Score=226.40  Aligned_cols=229  Identities=25%  Similarity=0.297  Sum_probs=189.3

Q ss_pred             cCCCcccCCcccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       100 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++.|.+ ..+|..+.  ++|+.|+|++|.|+ .+|.   .+++|++|+|++|+|++ +|.   .+++|++|+|++|.++
T Consensus        46 ~ls~n~L-~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           46 NVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             ECCSSCC-SCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred             EecCCCc-CccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence            3444433 36777665  79999999999997 4665   67999999999999974 665   7899999999999998


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRG  259 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~  259 (766)
                      + +|.   .+++|+.|++++|++++ +|..   +++|++|+|++|.+++..+   .+++|+.|++++|.+++ +|..+.+
T Consensus       115 ~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~~~~~~  182 (622)
T 3g06_A          115 H-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LPMLPSG  182 (622)
T ss_dssp             C-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred             C-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-CcccCCC
Confidence            6 454   67899999999999985 6654   4899999999999987433   35789999999999987 5577789


Q ss_pred             CcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcC
Q 004232          260 LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISN  339 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~  339 (766)
                      |+.|++++|++++ +|..   +++|+.|++++|.++.++.    .+++|+.|+|++|+|++ +|   ..+++|+.|++++
T Consensus       183 L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          183 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG  250 (622)
T ss_dssp             CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             CcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence            9999999999996 5543   5789999999999998764    24889999999999996 66   4568899999999


Q ss_pred             CccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          340 NKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       340 N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      |+|+ .+|.   .+++|+.|++++|.++
T Consensus       251 N~L~-~lp~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          251 NRLT-SLPM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred             CCCC-cCCc---ccccCcEEeCCCCCCC
Confidence            9999 5666   5678999999999988

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=7.3e-23  Score=208.96  Aligned_cols=203  Identities=18%  Similarity=0.239  Sum_probs=170.5

Q ss_pred             cCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCc-CCCCCCcccCCCCCCCEEEccC-ccCCCCCCccc
Q 004232          133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF-FNNTIPNWFDSLPSLTFLSMRN-NKLAGPFPSSI  210 (766)
Q Consensus       133 ~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~  210 (766)
                      .+|. +.  .+|++|+|++|++++..+..|.++++|++|+|++|. ++...+..|.++++|++|++++ |++++..+..|
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 33  389999999999998777799999999999999997 8877777899999999999999 99998777889


Q ss_pred             cCCCCCCEEEccCCccCCCCCCCCCCCCCC---EEECCCC-CCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCC-
Q 004232          211 QRISTLSDLDLSKNAISGSLPDLSSLGSLN---VLNLSDN-KLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQ-  285 (766)
Q Consensus       211 ~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~---~L~ls~N-~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~-  285 (766)
                      ..+++|++|++++|.+++ +|.+..+++|+   +|++++| .+                     ++..+..|..+++|+ 
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l---------------------~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYM---------------------TSIPVNAFQGLCNETL  159 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTC---------------------CEECTTTTTTTBSSEE
T ss_pred             CCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcch---------------------hhcCcccccchhccee
Confidence            999999999999999997 56688787777   7766666 44                     444556788999999 


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCeEEeecCc-CcccCCccCCCC-CCccEEeCcCCccccCCCCCCCCCCCCceeecCC
Q 004232          286 QLDMSFNALRGMPPPAIFSLPNISDLNLASNK-FSGSLPKNLNCG-GKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       286 ~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~~-~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~  363 (766)
                      .|++++|+++.+++..+.. ++|+.|+|++|+ +++..+..+..+ .+|+.||+++|++++ +|..  .+.+++.|++++
T Consensus       160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN  235 (239)
T ss_dssp             EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred             EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence            9999999999777666655 899999999995 987667788888 999999999999995 4443  566788888776


Q ss_pred             C
Q 004232          364 N  364 (766)
Q Consensus       364 N  364 (766)
                      +
T Consensus       236 ~  236 (239)
T 2xwt_C          236 T  236 (239)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=6.6e-22  Score=203.46  Aligned_cols=178  Identities=28%  Similarity=0.312  Sum_probs=116.2

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      .+.++++++.+. .+|..+.  ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            455666666664 3554443  4677777777777766666777777777777777777776666677777777777777


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      |++++..+..|..+++|++|+|++|.+++..+. +..+++|++|+|++|++++                     ..+..|
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------------~~~~~~  151 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS---------------------IPAGAF  151 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc---------------------cCHHHc
Confidence            777766666667777777777777777655544 4556666666655554432                     233345


Q ss_pred             cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       279 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                      +.+++|+.|+|++|++++.++..+..+++|+.|+|++|.+++.
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5666666666666666666666666666666666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8.8e-22  Score=202.50  Aligned_cols=179  Identities=23%  Similarity=0.314  Sum_probs=146.5

Q ss_pred             CCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEcc
Q 004232          143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLS  222 (766)
Q Consensus       143 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  222 (766)
                      +.+++++++|.++ .+|..+.  ++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            5678999999987 5776665  588999999999998888889999999999999999998888888889999999999


Q ss_pred             CCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccc
Q 004232          223 KNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPA  301 (766)
Q Consensus       223 ~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~  301 (766)
                      +|++++.++. +..+++|++|+|++|++++                     ..+..|+.+++|+.|+|++|++++.++..
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS---------------------LPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCC---------------------cChhHhccCCcccEEECcCCcCCccCHHH
Confidence            9998876654 5777888888777776653                     33445677888888888888888888877


Q ss_pred             cCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccC
Q 004232          302 IFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGG  345 (766)
Q Consensus       302 ~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~  345 (766)
                      |..+++|+.|+|++|++++..|..+..+++|+.|++++|.+++.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            88888888888888888877777778888888888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.4e-22  Score=215.04  Aligned_cols=195  Identities=24%  Similarity=0.402  Sum_probs=137.3

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      +..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+ +++ +..+++|++|+|++|.+++. | .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence            4567788888888888754 44 57888888888888888875 444 88888888888888888753 3 577888888


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      +|+|++|++++ +|. +..+++|++|+|++|.+++..+ +..+++|++|++++|.+++                      
T Consensus       111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~----------------------  165 (308)
T 1h6u_A          111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD----------------------  165 (308)
T ss_dssp             EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC----------------------
T ss_pred             EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC----------------------
Confidence            88888888875 333 7788888888888888876544 7777778888777776653                      


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      ++. +..+++|+.|++++|++++.++  +..+++|+.|+|++|++++..|  +..+++|+.|++++|.+++
T Consensus       166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            222 5566666666666666666554  5566666666666666664432  5556666666666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.7e-23  Score=227.47  Aligned_cols=245  Identities=18%  Similarity=0.212  Sum_probs=193.6

Q ss_pred             CCCcccCCcccccccCCCCCCEEecccccccccCC----ccccCCC-CCCEEecccccCccCCCccCCCC-----CCCCE
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLP----DKIHRLY-SLEYLDLSSNFLFGSVPPKISTM-----VKLQT  170 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~  170 (766)
                      ++.|...+.+|..+...++|++|+|++|.+.+..+    ..|.+++ +|++|+|++|.+++..+..+..+     ++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            45555666777777888889999999999988777    7788998 89999999999988878777775     99999


Q ss_pred             EEccCCcCCCCCCccc----CCC-CCCCEEEccCccCCCCCCcccc----C-CCCCCEEEccCCccCCCCCC-----CCC
Q 004232          171 LILDDNFFNNTIPNWF----DSL-PSLTFLSMRNNKLAGPFPSSIQ----R-ISTLSDLDLSKNAISGSLPD-----LSS  235 (766)
Q Consensus       171 L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~Ls~N~l~~~~p~-----~~~  235 (766)
                      |+|++|.+++..+..+    ..+ ++|++|+|++|++++..+..+.    . .++|++|+|++|.++.....     +..
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA  164 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHT
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhc
Confidence            9999999998777644    444 8999999999999877665543    3 36999999999999853321     344


Q ss_pred             CC-CCCEEECCCCCCCCCCCC--------CCCCCcEEEccCCcCccC----CcccccC-CCCCCEEEccCCcCCCCCc--
Q 004232          236 LG-SLNVLNLSDNKLDSNLPK--------LPRGLVMAFLSNNSFSGE----IPKQYGQ-LNQLQQLDMSFNALRGMPP--  299 (766)
Q Consensus       236 l~-~L~~L~ls~N~l~~~~p~--------~~~~l~~l~ls~N~l~~~----~p~~~~~-l~~L~~L~ls~N~l~~~~~--  299 (766)
                      ++ +|++|+|++|++++..+.        .+..|+.|+|++|.+++.    ++..+.. .++|+.|+|++|.+++..+  
T Consensus       165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence            44 899999999999765542        235899999999999873    4555655 4599999999999998765  


Q ss_pred             --cccCCCCCCCeEEeecCcCccc-------CCccCCCCCCccEEeCcCCccccC
Q 004232          300 --PAIFSLPNISDLNLASNKFSGS-------LPKNLNCGGKLVFFDISNNKLTGG  345 (766)
Q Consensus       300 --~~~~~l~~L~~L~L~~N~l~g~-------~p~~~~~~~~L~~L~ls~N~l~g~  345 (766)
                        ..+..+++|+.|+|++|.+.+.       ++..+..+++|+.||+++|++...
T Consensus       245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence              3456788999999999995533       234567788899999999998765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.3e-24  Score=238.67  Aligned_cols=243  Identities=20%  Similarity=0.252  Sum_probs=173.0

Q ss_pred             ccccccCCCCCCEEecccccccccC----CccccCCCCCCEEecccc---cCccCCCccC-------CCCCCCCEEEccC
Q 004232          110 FVTTLARLTSLRVLSLVSLGIWGSL----PDKIHRLYSLEYLDLSSN---FLFGSVPPKI-------STMVKLQTLILDD  175 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~L~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~  175 (766)
                      ++..+..+++|+.|+|++|.+....    +..|..+++|++|+|++|   ++.+.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4566778888999999998887763    344778888999988885   4555666555       6788888888888


Q ss_pred             CcCCC----CCCcccCCCCCCCEEEccCccCCCCCCccc----cCC---------CCCCEEEccCCccC-CCCC----CC
Q 004232          176 NFFNN----TIPNWFDSLPSLTFLSMRNNKLAGPFPSSI----QRI---------STLSDLDLSKNAIS-GSLP----DL  233 (766)
Q Consensus       176 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~l---------~~L~~L~Ls~N~l~-~~~p----~~  233 (766)
                      |.++.    .+|..+.++++|++|+|++|.+++..+..+    ..+         ++|++|+|++|.++ +.++    .+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            88887    467777888888888888888864433333    333         78888888888876 3344    24


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCC----CCCccccCCCCCCC
Q 004232          234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALR----GMPPPAIFSLPNIS  309 (766)
Q Consensus       234 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~----~~~~~~~~~l~~L~  309 (766)
                      ..+++|++|++++|+++..                .+...+|..+..+++|+.|+|++|.++    +.+|..+..+++|+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~----------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPE----------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHH----------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             HhCCCcCEEECcCCCCCHh----------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            5666777777777765410                000123446677788888888888875    55566777788888


Q ss_pred             eEEeecCcCccc----CCccC--CCCCCccEEeCcCCcccc----CCCCCC-CCCCCCceeecCCCcCCC
Q 004232          310 DLNLASNKFSGS----LPKNL--NCGGKLVFFDISNNKLTG----GLPSCL-SNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       310 ~L~L~~N~l~g~----~p~~~--~~~~~L~~L~ls~N~l~g----~~p~~~-~~~~~l~~l~l~~N~l~~  368 (766)
                      .|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|.+++
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            888888888765    45555  337788888888888887    467666 557788888888888874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=6.7e-22  Score=209.86  Aligned_cols=209  Identities=22%  Similarity=0.329  Sum_probs=176.4

Q ss_pred             EEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCcc
Q 004232          122 VLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNK  201 (766)
Q Consensus       122 ~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  201 (766)
                      .+.+..+.+...++  +.++++|++|++++|.+.. +| .+..+++|++|+|++|.+++..+  +.++++|++|+|++|+
T Consensus        23 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             HHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence            34455555554433  5678899999999999974 55 68999999999999999986544  9999999999999999


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCC
Q 004232          202 LAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQL  281 (766)
Q Consensus       202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l  281 (766)
                      +++.  +.+..+++|++|+|++|.+++. +.+..+++|++|++++|.+++                      ++. ++.+
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~----------------------~~~-l~~l  150 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN----------------------ISP-LAGL  150 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCC----------------------CGG-GGGC
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCc----------------------Ccc-ccCC
Confidence            9863  3689999999999999999874 558889999999998887753                      222 7789


Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeec
Q 004232          282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKF  361 (766)
Q Consensus       282 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l  361 (766)
                      ++|+.|++++|++++.++  +..+++|+.|+|++|++++..+  +..+++|+.|++++|++++..|  +..+++|+.+++
T Consensus       151 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l  224 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence            999999999999998776  8999999999999999986543  7889999999999999997664  788999999999


Q ss_pred             CCCcCCC
Q 004232          362 RGNCLSS  368 (766)
Q Consensus       362 ~~N~l~~  368 (766)
                      ++|.+++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            9999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=7.5e-24  Score=230.35  Aligned_cols=247  Identities=19%  Similarity=0.152  Sum_probs=201.7

Q ss_pred             EEecccccccccCCccccCCCCCCEEecccccCccCCC----ccCCCCC-CCCEEEccCCcCCCCCCcccCCC-----CC
Q 004232          122 VLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP----PKISTMV-KLQTLILDDNFFNNTIPNWFDSL-----PS  191 (766)
Q Consensus       122 ~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~  191 (766)
                      .++|+.|+++|.+|..+...++|++|||++|.+++..+    ..+.+++ +|++|+|++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999999999988888889999999999987776    7788898 99999999999998888777765     99


Q ss_pred             CCEEEccCccCCCCCCcccc----CC-CCCCEEEccCCccCCCCCC-----CCC-CCCCCEEECCCCCCCCCCC------
Q 004232          192 LTFLSMRNNKLAGPFPSSIQ----RI-STLSDLDLSKNAISGSLPD-----LSS-LGSLNVLNLSDNKLDSNLP------  254 (766)
Q Consensus       192 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~-----~~~-l~~L~~L~ls~N~l~~~~p------  254 (766)
                      |++|+|++|++++..+..+.    .+ ++|++|+|++|.+++..+.     +.. .++|++|+|++|.++..-.      
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999999987777544    44 8999999999999876553     344 3699999999999985322      


Q ss_pred             --CCCCCCcEEEccCCcCccCCccccc----CC-CCCCEEEccCCcCCCCC----ccccCC-CCCCCeEEeecCcCcccC
Q 004232          255 --KLPRGLVMAFLSNNSFSGEIPKQYG----QL-NQLQQLDMSFNALRGMP----PPAIFS-LPNISDLNLASNKFSGSL  322 (766)
Q Consensus       255 --~~~~~l~~l~ls~N~l~~~~p~~~~----~l-~~L~~L~ls~N~l~~~~----~~~~~~-l~~L~~L~L~~N~l~g~~  322 (766)
                        ..+..|+.|+|++|++++..+..+.    .+ ++|+.|||++|.++...    +..+.. .++|+.|+|++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence              2345899999999999988776554    44 69999999999998843    334444 459999999999998754


Q ss_pred             C----ccCCCCCCccEEeCcCCccccC-------CCCCCCCCCCCceeecCCCcCCC
Q 004232          323 P----KNLNCGGKLVFFDISNNKLTGG-------LPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       323 p----~~~~~~~~L~~L~ls~N~l~g~-------~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +    ..+..+++|+.|++++|.+++.       ++..+..++.++.+++++|.+..
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            4    3456778999999999995533       34467788889999999998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=1e-21  Score=223.95  Aligned_cols=184  Identities=27%  Similarity=0.396  Sum_probs=122.8

Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 004232          119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR  198 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  198 (766)
                      +|+.|+|++|++++ +|..+.  ++|++|+|++|+|+ .+|   ..+++|++|+|++|.|++ +|. +.+  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            68888888888876 776553  78888899888887 566   457888888888888887 666 655  88888888


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      +|+|++ +|.   .+++|+.|+|++|.+++ +|.  .+++|++|+|++|++++ +|.+..+|+.|+|++|+|+ .+|. |
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCC-chhh-H
Confidence            888886 665   57888888888888886 444  56778888888887766 3334445555555555555 3444 3


Q ss_pred             cCCCCC-------CEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccC
Q 004232          279 GQLNQL-------QQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNL  326 (766)
Q Consensus       279 ~~l~~L-------~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~  326 (766)
                      ..  +|       +.|+|++|+|+.+| ..++.+++|+.|+|++|+|++.+|..+
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             C----------CCEEEECCSSCCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            32  44       55555555555433 234445555555555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.2e-24  Score=236.75  Aligned_cols=217  Identities=18%  Similarity=0.244  Sum_probs=174.6

Q ss_pred             ccCCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCC---cCCCCCCccc-------CCCCCCCEEEc
Q 004232          132 GSLPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDN---FFNNTIPNWF-------DSLPSLTFLSM  197 (766)
Q Consensus       132 ~~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L  197 (766)
                      ..++..+..+++|++|+|++|.+++.    ++..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            35777889999999999999999865    3445789999999999996   4455666655       78999999999


Q ss_pred             cCccCCC----CCCccccCCCCCCEEEccCCccCCCCCC-----CCCC---------CCCCEEECCCCCCCCCCCCCCCC
Q 004232          198 RNNKLAG----PFPSSIQRISTLSDLDLSKNAISGSLPD-----LSSL---------GSLNVLNLSDNKLDSNLPKLPRG  259 (766)
Q Consensus       198 ~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~l---------~~L~~L~ls~N~l~~~~p~~~~~  259 (766)
                      ++|++++    .+|..+..+++|++|+|++|.++...+.     +..+         ++|++|++++|+++.        
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------  173 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------  173 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence            9999987    4777888999999999999998643221     2233         677777777776641        


Q ss_pred             CcEEEccCCcCccCCc---ccccCCCCCCEEEccCCcCC--C---CCccccCCCCCCCeEEeecCcCc----ccCCccCC
Q 004232          260 LVMAFLSNNSFSGEIP---KQYGQLNQLQQLDMSFNALR--G---MPPPAIFSLPNISDLNLASNKFS----GSLPKNLN  327 (766)
Q Consensus       260 l~~l~ls~N~l~~~~p---~~~~~l~~L~~L~ls~N~l~--~---~~~~~~~~l~~L~~L~L~~N~l~----g~~p~~~~  327 (766)
                                  +.+|   ..+..+++|+.|++++|+++  |   ..+..+..+++|+.|+|++|.++    +.+|..+.
T Consensus       174 ------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~  241 (386)
T 2ca6_A          174 ------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  241 (386)
T ss_dssp             ------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             ------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence                        2334   56778899999999999998  3   34447888999999999999996    67888889


Q ss_pred             CCCCccEEeCcCCccccC----CCCCC--CCCCCCceeecCCCcCCC
Q 004232          328 CGGKLVFFDISNNKLTGG----LPSCL--SNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       328 ~~~~L~~L~ls~N~l~g~----~p~~~--~~~~~l~~l~l~~N~l~~  368 (766)
                      .+++|+.|+|++|.+++.    +|..+  +.+++|+.|++++|.+++
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            999999999999999876    56655  348899999999999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=2.7e-21  Score=220.52  Aligned_cols=187  Identities=24%  Similarity=0.407  Sum_probs=161.2

Q ss_pred             CCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEcc
Q 004232          143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLS  222 (766)
Q Consensus       143 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  222 (766)
                      +|+.|+|++|++++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|++|+|++|+|++ +|. +.+  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            89999999999987 787664  89999999999999 677   568999999999999997 777 665  99999999


Q ss_pred             CCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCcccc
Q 004232          223 KNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI  302 (766)
Q Consensus       223 ~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~  302 (766)
                      +|.+++ +|.  .+++|++|+|++|++++ +|..+.+|+.|+|++|+|++ +|. |.  ++|+.|+|++|+|+.+++  +
T Consensus       129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~--~  198 (571)
T 3cvr_A          129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA--V  198 (571)
T ss_dssp             SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC--C
T ss_pred             CCcCCC-CCC--cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh--H
Confidence            999998 555  78999999999999987 66677889999999999997 777 66  899999999999997665  5


Q ss_pred             CCCCCC-------CeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCC
Q 004232          303 FSLPNI-------SDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNE  353 (766)
Q Consensus       303 ~~l~~L-------~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~  353 (766)
                      ..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            54  77       99999999998 688888889999999999999999888766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.5e-21  Score=194.71  Aligned_cols=161  Identities=24%  Similarity=0.245  Sum_probs=135.9

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            57999999999999887888999999999999999999777777899999999999999999887788999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcc
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPK  276 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~  276 (766)
                      ++|++++..+..+..+++|++|+|++|.+++.++. +..+++|++|++++|.+.+..|    .++.++++.|+++|.+|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT----TTHHHHHHHHHCTTTBBC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC----CHHHHHHHHHhCCceeec
Confidence            99999987777789999999999999999987775 7889999999999998765433    344555555555555555


Q ss_pred             cccCCC
Q 004232          277 QYGQLN  282 (766)
Q Consensus       277 ~~~~l~  282 (766)
                      .++.++
T Consensus       184 ~~~~l~  189 (208)
T 2o6s_A          184 SAGSVA  189 (208)
T ss_dssp             TTSSBC
T ss_pred             cCcccc
Confidence            555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=6e-22  Score=214.27  Aligned_cols=220  Identities=18%  Similarity=0.123  Sum_probs=152.2

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCC-ccCCCCCCCCE-EEccCCcCCCCCCcccCCCCCCCEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP-PKISTMVKLQT-LILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      ++|+.|+|++|+|+...+.+|.+|++|++|+|++|++.+.+| ..|.++++|++ +.+++|+++...|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            578999999999987777789999999999999999877666 46788998876 5777899998889999999999999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccC-CccCCCCCC-CCCCC-CCCEEECCCCCCCCCCCCCC--CCCcEEEccC-Cc
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSK-NAISGSLPD-LSSLG-SLNVLNLSDNKLDSNLPKLP--RGLVMAFLSN-NS  269 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~-~~~l~-~L~~L~ls~N~l~~~~p~~~--~~l~~l~ls~-N~  269 (766)
                      ++++|++++..+..+....++..|++++ |++....+. +..+. .+++|+|++|+++...+...  ..+..+++++ |.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            9999999977777777778888999876 455543332 45543 57788888888875444432  2355556653 44


Q ss_pred             CccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCc
Q 004232          270 FSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNK  341 (766)
Q Consensus       270 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~  341 (766)
                      ++...+..|..+++|+.|||++|+|+.+|+..+.+   |+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            44333345666666666666666666666544433   3333333332223455 25555666666665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.7e-23  Score=224.85  Aligned_cols=202  Identities=22%  Similarity=0.255  Sum_probs=140.8

Q ss_pred             ccccCC--CCCCEEecccccccccCCccccCCCCCCEEecccccCccC-CCccCCCCCCCCEEEccCCcCCCCCCcccCC
Q 004232          112 TTLARL--TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGS-VPPKISTMVKLQTLILDDNFFNNTIPNWFDS  188 (766)
Q Consensus       112 ~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  188 (766)
                      ..+..+  ++|+.|++++|.+.+..|. +..+++|++|+|++|.+++. +|..+..+++|++|+|++|.+++..|..++.
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            345556  7889999999999887766 56789999999999988765 7888889999999999999988888888888


Q ss_pred             CCCCCEEEccCc-cCCC-CCCccccCCCCCCEEEccCC-ccCCC-CCC-CCCCC-CCCEEECCCC--CCC-CCCCCC---
Q 004232          189 LPSLTFLSMRNN-KLAG-PFPSSIQRISTLSDLDLSKN-AISGS-LPD-LSSLG-SLNVLNLSDN--KLD-SNLPKL---  256 (766)
Q Consensus       189 l~~L~~L~L~~N-~l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~-~~~l~-~L~~L~ls~N--~l~-~~~p~~---  256 (766)
                      +++|++|+|++| .+++ .+|..+..+++|++|+|++| .+++. ++. +..++ +|++|++++|  .++ +.+|..   
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            999999999999 6765 36677888899999999999 88753 333 56778 8888888888  343 212211   


Q ss_pred             CCCCcEEEccCCc-CccCCcccccCCCCCCEEEccCCcCCCCCcc---ccCCCCCCCeEEeecC
Q 004232          257 PRGLVMAFLSNNS-FSGEIPKQYGQLNQLQQLDMSFNALRGMPPP---AIFSLPNISDLNLASN  316 (766)
Q Consensus       257 ~~~l~~l~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~~L~L~~N  316 (766)
                      ..+|+.|++++|. +++..+..+..+++|+.|++++|.  +..+.   .+..+++|+.|+|++|
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence            2344555555555 444444455555555555555553  22222   3444555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=2.2e-24  Score=242.37  Aligned_cols=259  Identities=17%  Similarity=0.180  Sum_probs=158.0

Q ss_pred             cccccccCCCCCCEEecccccccccCCcccc-----CCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCC
Q 004232          109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIH-----RLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                      .++..+.++++|++|+|++|.+.+..+..+.     .+++|++|+|++|++++.    ++..+..+++|++|+|++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            3456667777777777777776544333222     245677777777776653    2445556677777777777665


Q ss_pred             CCCCcccC-----CCCCCCEEEccCccCCCC----CCccccCCCCCCEEEccCCccCCCC-----CC-CCCCCCCCEEEC
Q 004232          180 NTIPNWFD-----SLPSLTFLSMRNNKLAGP----FPSSIQRISTLSDLDLSKNAISGSL-----PD-LSSLGSLNVLNL  244 (766)
Q Consensus       180 ~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~-~~~l~~L~~L~l  244 (766)
                      ...+..+.     .+++|++|+|++|++++.    ++..+..+++|++|+|++|.++...     +. +..+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            44333332     255777777777777653    4556666777777777777665421     11 234667777777


Q ss_pred             CCCCCCCC----CCCC---CCCCcEEEccCCcCccCCcccccC-----CCCCCEEEccCCcCCCC----CccccCCCCCC
Q 004232          245 SDNKLDSN----LPKL---PRGLVMAFLSNNSFSGEIPKQYGQ-----LNQLQQLDMSFNALRGM----PPPAIFSLPNI  308 (766)
Q Consensus       245 s~N~l~~~----~p~~---~~~l~~l~ls~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~~----~~~~~~~l~~L  308 (766)
                      ++|.++..    ++..   ...|+.+++++|.+++..+..+..     .++|+.|++++|.+++.    .+..+..+++|
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            77776642    2221   245677777777776543333332     25777777777777654    23445556777


Q ss_pred             CeEEeecCcCcccCCccCCC-----CCCccEEeCcCCcccc----CCCCCCCCCCCCceeecCCCcCC
Q 004232          309 SDLNLASNKFSGSLPKNLNC-----GGKLVFFDISNNKLTG----GLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       309 ~~L~L~~N~l~g~~p~~~~~-----~~~L~~L~ls~N~l~g----~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      +.|+|++|.+++..+..+..     .++|+.|++++|++++    .+|..+..+++|+.+++++|.++
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            77777777776543333321     4577777777777765    56666666677777777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=9.5e-23  Score=219.08  Aligned_cols=244  Identities=18%  Similarity=0.193  Sum_probs=199.6

Q ss_pred             CCEEecccccccccCCccccCC--CCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCC-CCcccCCCCCCCEEE
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRL--YSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNT-IPNWFDSLPSLTFLS  196 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~  196 (766)
                      ++.|++++|.+.   |..+..+  ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            678999999876   5677888  8999999999999876655 67899999999999999876 888899999999999


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCC-ccCCC-CCC-CCCCCCCCEEECCCC-CCCCC-CCC----CCCCCcEEEccC
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKN-AISGS-LPD-LSSLGSLNVLNLSDN-KLDSN-LPK----LPRGLVMAFLSN  267 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~-~~~l~~L~~L~ls~N-~l~~~-~p~----~~~~l~~l~ls~  267 (766)
                      |++|++++..|..+..+++|++|+|++| .+++. ++. +..+++|++|++++| .+++. ++.    ++.+|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            9999999888999999999999999999 67752 444 678899999999999 88753 232    233899999999


Q ss_pred             C--cCc-cCCcccccCCCCCCEEEccCCc-CCCCCccccCCCCCCCeEEeecCc-CcccCCccCCCCCCccEEeCcCCcc
Q 004232          268 N--SFS-GEIPKQYGQLNQLQQLDMSFNA-LRGMPPPAIFSLPNISDLNLASNK-FSGSLPKNLNCGGKLVFFDISNNKL  342 (766)
Q Consensus       268 N--~l~-~~~p~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~~~~L~~L~ls~N~l  342 (766)
                      |  .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|+|++|. ++......+..+++|+.|++++| +
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i  283 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V  283 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence            9  566 5678888999999999999999 777777789999999999999996 32221225778999999999998 3


Q ss_pred             ccCCCCCCCCC-CCCceeecCCCcCCCCcC
Q 004232          343 TGGLPSCLSNE-SDKRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       343 ~g~~p~~~~~~-~~l~~l~l~~N~l~~~~~  371 (766)
                      +.   ..+..+ ..+..|++++|.+++..+
T Consensus       284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          284 PD---GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CT---TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CH---HHHHHHHhhCcceEEecccCccccC
Confidence            32   123323 236777899999987543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.5e-20  Score=187.39  Aligned_cols=160  Identities=24%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECC
Q 004232          167 KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLS  245 (766)
Q Consensus       167 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls  245 (766)
                      +|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++.++. +..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            444444444444433333344444444444444444433333344444444555544444443332 3444455555444


Q ss_pred             CCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCcc
Q 004232          246 DNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKN  325 (766)
Q Consensus       246 ~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~  325 (766)
                      +|++++                     ..+..|..+++|+.|++++|++++.++..+..+++|+.|+|++|.+.+.    
T Consensus       109 ~N~l~~---------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----  163 (208)
T 2o6s_A          109 TNQLQS---------------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----  163 (208)
T ss_dssp             SSCCCC---------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----
T ss_pred             CCcCcc---------------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----
Confidence            444332                     2223345555666666666666666555566666666666666655543    


Q ss_pred             CCCCCCccEEeCcCCccccCCCCCCCCCC
Q 004232          326 LNCGGKLVFFDISNNKLTGGLPSCLSNES  354 (766)
Q Consensus       326 ~~~~~~L~~L~ls~N~l~g~~p~~~~~~~  354 (766)
                         +..|+.|+++.|+++|.+|.+++++.
T Consensus       164 ---~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          164 ---CPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ---TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ---CCCHHHHHHHHHhCCceeeccCcccc
Confidence               23566666666666666666665443

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.84  E-value=7.5e-21  Score=198.72  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=114.3

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChh------------------hhHHHHHHHHHHHHhCCC
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK------------------YTVRNLKLRLDLLAKLRH  538 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~~~~e~~~l~~l~H  538 (766)
                      .+......|++.+.||+|+||.||+|+..+|+.||||.++....                  .....+.+|+++|++++ 
T Consensus        84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-  162 (282)
T 1zar_A           84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-  162 (282)
T ss_dssp             HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence            34444455777799999999999999997799999999964321                  23567899999999999 


Q ss_pred             CCcccccceeecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       539 pniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                       | +++.+++...         ..++||||+++|+|.+ +..         .....++.+++.||+|||+.   +|+|||
T Consensus       163 -~-~~v~~~~~~~---------~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrD  218 (282)
T 1zar_A          163 -G-LAVPKVYAWE---------GNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGD  218 (282)
T ss_dssp             -T-SSSCCEEEEE---------TTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred             -C-CCcCeEEecc---------ceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCC
Confidence             5 7777765432         4699999999999998 532         12346999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      |||+|||++ ++.+||+|||+++..
T Consensus       219 lkp~NILl~-~~~vkl~DFG~a~~~  242 (282)
T 1zar_A          219 LSQYNVLVS-EEGIWIIDFPQSVEV  242 (282)
T ss_dssp             CSTTSEEEE-TTEEEECCCTTCEET
T ss_pred             CCHHHEEEE-CCcEEEEECCCCeEC
Confidence            999999999 999999999998643

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.84  E-value=5.7e-22  Score=225.97  Aligned_cols=173  Identities=15%  Similarity=0.188  Sum_probs=124.0

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCCh--------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .+.||+|+||.||+|+. .+..+|+|+.....        ....+++.+|++++++++||||+++..++...+       
T Consensus       341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~-------  412 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD-------  412 (540)
T ss_dssp             -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT-------
T ss_pred             CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC-------
Confidence            56899999999999954 47788998764321        112456899999999999999997776666543       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++||||+++|+|.+++.+           +..++.|+++||+|||+.   +|+||||||+|||++.  .+||+|||+
T Consensus       413 -~~~lVmE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGl  475 (540)
T 3en9_A          413 -NKRIMMSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGL  475 (540)
T ss_dssp             -TTEEEEECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTT
T ss_pred             -ccEEEEECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECcc
Confidence             46999999999999999864           457899999999999997   8999999999999998  999999999


Q ss_pred             Ccccccccc-----------cccCCCC--CCcc----cCCCCCCCEeehhHHHHHHhcCCCcc
Q 004232          640 SIVSEDINS-----------VGGKQED--PNSW----EMTKLEDDVFSFGFMLLESVAGPSVA  685 (766)
Q Consensus       640 a~~~~~~~~-----------~~~~~~~--~~~~----~~~~~~~DV~SfGvil~ElltG~~p~  685 (766)
                      ++.......           ..++..+  |..+    ..++..+|+||..+-..|.+.++.++
T Consensus       476 a~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          476 GKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             CEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             CEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            977644211           0111111  1111    12334568888887777777666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.9e-20  Score=202.43  Aligned_cols=236  Identities=17%  Similarity=0.127  Sum_probs=180.5

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCC-cccCCCCCCCE-EEcc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIP-NWFDSLPSLTF-LSMR  198 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~L~  198 (766)
                      ++++-++++++ .+|..+  .++|++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|.. +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777888886 567655  3689999999999987666789999999999999999977665 56899998775 6777


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCC-CCCCCCCCC----CCCCCcEEEccCCcCcc
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSD-NKLDSNLPK----LPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~-N~l~~~~p~----~~~~l~~l~ls~N~l~~  272 (766)
                      +|+++...|..|..+++|++|++++|++++..+. +....++..|++.+ |++....+.    ....++.++|++|+|+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            8999988899999999999999999999876653 45666788888865 556543332    23457789999999985


Q ss_pred             CCcccccCCCCCCEEEcc-CCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCC
Q 004232          273 EIPKQYGQLNQLQQLDMS-FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLS  351 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~  351 (766)
                       +|.......+|+.|+++ +|.++.+++..|..+++|+.|+|++|+|+...+..+   ..|+.|.+.++.--..+|. +.
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~  243 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LE  243 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TT
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-ch
Confidence             44444456689999997 477888888888999999999999999984433334   4555665554433336664 67


Q ss_pred             CCCCCceeecCCC
Q 004232          352 NESDKRVVKFRGN  364 (766)
Q Consensus       352 ~~~~l~~l~l~~N  364 (766)
                      ++++|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            7888888887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=7e-24  Score=238.25  Aligned_cols=258  Identities=20%  Similarity=0.191  Sum_probs=134.4

Q ss_pred             ccccccCCCCCCEEecccccccccCCccc-cCCC----CCCEEecccccCcc----CCCccCCCCCCCCEEEccCCcCCC
Q 004232          110 FVTTLARLTSLRVLSLVSLGIWGSLPDKI-HRLY----SLEYLDLSSNFLFG----SVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~L~----~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      ++..+..+++|++|+|++|.+....+..+ ..+.    +|++|+|++|.++.    .+|..+..+++|++|+|++|.++.
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            44555666666666666666654333322 2333    46666666666652    345666666666666666666553


Q ss_pred             CCCcc-----cCCCCCCCEEEccCccCCCC----CCccccCCCCCCEEEccCCccCCCCCC-C-----CCCCCCCEEECC
Q 004232          181 TIPNW-----FDSLPSLTFLSMRNNKLAGP----FPSSIQRISTLSDLDLSKNAISGSLPD-L-----SSLGSLNVLNLS  245 (766)
Q Consensus       181 ~~p~~-----~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~-----~~l~~L~~L~ls  245 (766)
                      ..+..     +..+++|++|+|++|++++.    ++..+..+++|++|+|++|.++...+. +     ..+++|++|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence            32222     12345566666666666542    244445556666666666665432111 1     124456666666


Q ss_pred             CCCCCCC----CCCC---CCCCcEEEccCCcCccCC-----cccccCCCCCCEEEccCCcCCCC----CccccCCCCCCC
Q 004232          246 DNKLDSN----LPKL---PRGLVMAFLSNNSFSGEI-----PKQYGQLNQLQQLDMSFNALRGM----PPPAIFSLPNIS  309 (766)
Q Consensus       246 ~N~l~~~----~p~~---~~~l~~l~ls~N~l~~~~-----p~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~l~~L~  309 (766)
                      +|.+++.    ++..   ...|+.+++++|.+++..     +..+..+++|+.|++++|+++..    ++..+..+++|+
T Consensus       208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred             CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence            6665542    1211   244566666666655421     22223455666666666666543    233444456666


Q ss_pred             eEEeecCcCcccCCccCC-----CCCCccEEeCcCCccccC----CCCCCCCCCCCceeecCCCcCC
Q 004232          310 DLNLASNKFSGSLPKNLN-----CGGKLVFFDISNNKLTGG----LPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       310 ~L~L~~N~l~g~~p~~~~-----~~~~L~~L~ls~N~l~g~----~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      .|+|++|.+++..+..+.     ..++|+.|++++|.+++.    +|..+..+++|+.|++++|.++
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            666666665433222221     124566666666665543    3334444555666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=2e-20  Score=215.62  Aligned_cols=174  Identities=26%  Similarity=0.346  Sum_probs=93.8

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      +..|++|+.|+|++|.+.. +| .|..|++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence            3445555555555555533 22 35555555555555555554322  5555555555555555543 22 455555555


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      .|+|++|++++.  +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.++                     +.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~---------------------~~  168 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS---------------------DI  168 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC---------------------CC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC---------------------Cc
Confidence            555555555531  2345555555555555555543 44444555555544444433                     23


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                      .|  +..+++|+.|+|++|+|++++  .+..+++|+.|+|++|++++.
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECC
T ss_pred             hh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCC
Confidence            33  666677777777777777652  466677777777777776643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.82  E-value=1.5e-21  Score=230.68  Aligned_cols=189  Identities=17%  Similarity=0.201  Sum_probs=73.0

Q ss_pred             CChHHHHHHHHHHHcCCCC--CCCCCccCCCCCCCCCCCCCccceEecCCCEEEEEeCCCCCCCCCCCCccccccccCCC
Q 004232           26 LQSSQTQVLLQLRKHLEYP--KQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSE  103 (766)
Q Consensus        26 ~~~~~~~aLl~~k~~~~~~--~~l~~W~~~~~~~C~~~~~~~~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~  103 (766)
                      ....++++|+++..++..+  ..-..|.......+.|     .++.+...+++.+++.++.....               
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~l~L~~n~~~~~---------------  188 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTA-----TNSAVSTPLTPKIELFANGKDEA---------------  188 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccC-----CCceecCCccceEEeeCCCCCcc---------------
Confidence            3456788999998876322  1234564432334454     35677666777777654432220               


Q ss_pred             cccCCcccccccCCCCCCEEecccccccc---------cCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEcc
Q 004232          104 NFSIDSFVTTLARLTSLRVLSLVSLGIWG---------SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD  174 (766)
Q Consensus       104 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~---------~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  174 (766)
                             +.     ..|+.++|+.|.|.+         ..|+.|..+.+|+.|+|++|.+. .+|..+.++++|++|+|+
T Consensus       189 -------~~-----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls  255 (727)
T 4b8c_D          189 -------NQ-----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLN  255 (727)
T ss_dssp             ---------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCT
T ss_pred             -------hh-----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEee
Confidence                   11     112333333333321         34555666666666666666665 455555566666666666


Q ss_pred             CCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCC
Q 004232          175 DNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKL  249 (766)
Q Consensus       175 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l  249 (766)
                      +|.|+ .+|..|++|++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+..++.++.|++|++|+|++|.|
T Consensus       256 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          256 GNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            66665 55555666666666666666665 455556656666666665555543322344455544444444433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=2.9e-19  Score=180.94  Aligned_cols=134  Identities=28%  Similarity=0.280  Sum_probs=123.9

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|.+.+..|..|.++++|++|+|++|+|.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            78999999999999999999999999999999999998766677899999999999999999888888999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSN  252 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~  252 (766)
                      ++|+|+ .+|..+..+++|++|+|++|++++..+. +..+++|+.|++++|.++..
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999999 7899999999999999999999987765 78899999999999988754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.4e-19  Score=190.20  Aligned_cols=171  Identities=27%  Similarity=0.347  Sum_probs=79.1

Q ss_pred             cCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      ..+++|+.|++++|.+... | .+..+++|++|+|++|++++..|  +.++++|++|+|++|.+++ +| .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            3444555555555555332 2 24555555555555555543222  5555555555555555543 12 2445555555


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~  274 (766)
                      |+|++|++++.  +.+..+++|+.|+|++|.+++. +.+..+++|++|++++|++++                     ..
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~---------------------~~  172 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD---------------------IV  172 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---------------------CG
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc---------------------ch
Confidence            55555554432  2344444455555544444432 334444444444444433321                     11


Q ss_pred             cccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      |  +..+++|+.|++++|.+++.+  .+..+++|+.|++++|+++
T Consensus       173 ~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          173 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEE
T ss_pred             h--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCccc
Confidence            1  444555555555555555432  2444555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.1e-19  Score=209.53  Aligned_cols=195  Identities=21%  Similarity=0.308  Sum_probs=158.4

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +..+..++|..+.+...++  +..|.+|+.|+|++|.+.. +| .+..|++|+.|+|++|.+++..|  +..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3445556677777765544  5788899999999999864 44 58889999999999999987655  88999999999


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcc
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPK  276 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~  276 (766)
                      |++|++++ +| .+..+++|+.|+|++|.+++ ++.+..+++|+.|+|++|.+++                      + .
T Consensus        94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~----------------------l-~  147 (605)
T 1m9s_A           94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD----------------------I-T  147 (605)
T ss_dssp             CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCC----------------------C-G
T ss_pred             CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCC----------------------c-h
Confidence            99999985 33 68889999999999999986 4678888889988888887753                      1 4


Q ss_pred             cccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCC
Q 004232          277 QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP  347 (766)
Q Consensus       277 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p  347 (766)
                      .++.+++|+.|+|++|++++.+|  +..+++|+.|+|++|+|++. | .+..+.+|+.|+|++|.+++...
T Consensus       148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCC
T ss_pred             hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcc
Confidence            57788899999999999998877  88899999999999999864 3 57888999999999999886533

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=8.9e-20  Score=191.77  Aligned_cols=190  Identities=23%  Similarity=0.334  Sum_probs=156.2

Q ss_pred             CCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 004232          119 SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR  198 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  198 (766)
                      ++..+.+..+.+.+..+  +..+++|++|++++|.+.. +| .+..+++|++|+|++|++++..|  +.++++|++|+|+
T Consensus        25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            34445566666655433  5678999999999999975 44 48889999999999999987554  8999999999999


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY  278 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~  278 (766)
                      +|++++ + +.+..+++|++|+|++|.+++ ++.+..+++|++|++++|++++                      + ..+
T Consensus        99 ~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~----------------------~-~~l  152 (291)
T 1h6t_A           99 ENKVKD-L-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD----------------------I-TVL  152 (291)
T ss_dssp             SSCCCC-G-GGGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC----------------------C-GGG
T ss_pred             CCcCCC-C-hhhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCc----------------------c-hhh
Confidence            999986 3 348899999999999999986 4678888888888888887753                      2 457


Q ss_pred             cCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       279 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      +.+++|+.|++++|++++.++  +..+++|+.|+|++|.+++ +| .+..+++|+.|++++|.++.
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            788999999999999999876  8899999999999999985 44 37888999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.3e-19  Score=193.48  Aligned_cols=174  Identities=25%  Similarity=0.291  Sum_probs=108.8

Q ss_pred             EEecccccccccCCccccCCCCCCEEecccccCccCCCccCC-CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          122 VLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS-TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       122 ~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      .+++++|++.. +|..+.  ..++.|+|++|+|++..+..+. ++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            45555555533 444332  2466666666666665555555 6666666666666666666666666666667777666


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccc-
Q 004232          201 KLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY-  278 (766)
Q Consensus       201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~-  278 (766)
                      +|++..+..|..+++|++|+|++|++++..|. +..+++|+.|+|++|++++.                     .+..| 
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l---------------------~~~~~~  157 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF---------------------PVELIK  157 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC---------------------CGGGTC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee---------------------CHHHhc
Confidence            66665555666666666666666666655443 56666666666666655431                     11122 


Q ss_pred             --cCCCCCCEEEccCCcCCCCCccccCCCCC--CCeEEeecCcCc
Q 004232          279 --GQLNQLQQLDMSFNALRGMPPPAIFSLPN--ISDLNLASNKFS  319 (766)
Q Consensus       279 --~~l~~L~~L~ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~  319 (766)
                        ..+++|+.|||++|+|+++++..+..+++  |+.|+|++|.+.
T Consensus       158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence              45677778888888887777766666666  367777777775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.5e-18  Score=174.44  Aligned_cols=150  Identities=23%  Similarity=0.327  Sum_probs=81.0

Q ss_pred             EEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCc
Q 004232          146 YLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNA  225 (766)
Q Consensus       146 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  225 (766)
                      .+++++|.++ .+|..+.  ++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            3444444443 2343332  345555555555554444455555555555555555555555555555555555555555


Q ss_pred             cCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCC
Q 004232          226 ISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFS  304 (766)
Q Consensus       226 l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  304 (766)
                      ++...+. +..+++|++|+|++|++++                     ..|..|..+++|+.|+|++|++++.++..|..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~---------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINC---------------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCE---------------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence            5543333 3445555555554444332                     23445555666666666666666666666666


Q ss_pred             CCCCCeEEeecCcCc
Q 004232          305 LPNISDLNLASNKFS  319 (766)
Q Consensus       305 l~~L~~L~L~~N~l~  319 (766)
                      +++|+.|+|++|.+.
T Consensus       151 l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTCCEEECCSSCEE
T ss_pred             CCCCCEEEeCCCCcC
Confidence            666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.4e-18  Score=174.11  Aligned_cols=134  Identities=28%  Similarity=0.360  Sum_probs=76.3

Q ss_pred             CCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEEC
Q 004232          166 VKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNL  244 (766)
Q Consensus       166 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~l  244 (766)
                      ++|++|+|++|.+++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++|++++..+. +..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            4455555555555544455555555555555555555443334445555555555555555544433 345555555555


Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          245 SDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       245 s~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                      ++|+++                      .+|..+..+++|+.|+|++|+|++.++..+..+++|+.|+|++|.+.+.
T Consensus       120 s~N~l~----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLT----------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCC----------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccc----------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            555443                      2445556666777777777777777666666777777777777776644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=4.5e-19  Score=192.45  Aligned_cols=176  Identities=26%  Similarity=0.245  Sum_probs=142.5

Q ss_pred             CEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccC
Q 004232          145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD-SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSK  223 (766)
Q Consensus       145 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  223 (766)
                      +.+++++|++. .+|..+.  ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            68999999997 4777665  4589999999999988888887 999999999999999988888899999999999999


Q ss_pred             CccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCcccc
Q 004232          224 NAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAI  302 (766)
Q Consensus       224 N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~  302 (766)
                      |+|++..+. +..+++|++|+|++|+++                     +..|..|..+++|+.|+|++|+|+++++..|
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~---------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIV---------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCC---------------------EECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCccc---------------------EECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            999876664 778888888888777664                     3456778889999999999999999887766


Q ss_pred             ---CCCCCCCeEEeecCcCcccCCccCCCCCC--ccEEeCcCCcccc
Q 004232          303 ---FSLPNISDLNLASNKFSGSLPKNLNCGGK--LVFFDISNNKLTG  344 (766)
Q Consensus       303 ---~~l~~L~~L~L~~N~l~g~~p~~~~~~~~--L~~L~ls~N~l~g  344 (766)
                         ..+++|+.|+|++|+|++..+..+..+..  ++.|+|++|.+..
T Consensus       157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence               56888999999999988554455555554  3667787777763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.2e-18  Score=175.08  Aligned_cols=45  Identities=27%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcc
Q 004232          276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSG  320 (766)
Q Consensus       276 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g  320 (766)
                      ..|..+++|+.|+|++|++++.+|..|..+++|+.|+|++|.+++
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            334444455555555555555544455555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=5.6e-22  Score=227.24  Aligned_cols=203  Identities=19%  Similarity=0.189  Sum_probs=130.6

Q ss_pred             cCCCCCCEEecccccccccCCccccCCCCCCEEeccccc-------------CccCCCccCCCCCCCCEEE-ccCCcCCC
Q 004232          115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNF-------------LFGSVPPKISTMVKLQTLI-LDDNFFNN  180 (766)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~  180 (766)
                      ..+++|+.|+|++|.+. .+|+.+++|++|+.|++++|.             +.+.+|..++++++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            45666666666666663 556666666666666665553             3334444444444454444 333322  


Q ss_pred             CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q 004232          181 TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGL  260 (766)
Q Consensus       181 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l  260 (766)
                               .+|..+.+++|.++.. |.     ..|+.|+|++|.|++ +|.++.+++|+.|+|++|.|+          
T Consensus       423 ---------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~----------  476 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR----------  476 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC----------
T ss_pred             ---------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcCccccccCcEeecCccccc----------
Confidence                     1233333444444422 11     246777777777776 445667777777776666554          


Q ss_pred             cEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccC-CccCCCCCCccEEeCcC
Q 004232          261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL-PKNLNCGGKLVFFDISN  339 (766)
Q Consensus       261 ~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~~~~L~~L~ls~  339 (766)
                                  .+|..|+.+++|+.|+|++|+|+++ | .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++
T Consensus       477 ------------~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          477 ------------ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             ------------CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             ------------ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence                        4677788888888888888888885 3 6888888888888888888776 88888888888888888


Q ss_pred             CccccCCCCCC---CCCCCCceee
Q 004232          340 NKLTGGLPSCL---SNESDKRVVK  360 (766)
Q Consensus       340 N~l~g~~p~~~---~~~~~l~~l~  360 (766)
                      |.+++.+|...   ..+++|+.|+
T Consensus       543 N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          543 NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcCCCCccHHHHHHHHCcccCccC
Confidence            88887655321   2255666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.5e-18  Score=172.80  Aligned_cols=133  Identities=22%  Similarity=0.258  Sum_probs=124.6

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|+.|+|++|.|.+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            57999999999999988889999999999999999999988999999999999999999999777777899999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~  250 (766)
                      ++|++++..|..|..+++|++|+|++|++++..+. +..+++|++|+|++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999999999999999999999999988775 888999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=7.9e-19  Score=173.36  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             cCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      +.+++|+.|++++|.+. .+| .+..+++|++|++++|.+.  .++.+..+++|++|+|++|.+++..|..|+.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44555556666655554 344 3555555555555555442  2234555555555555555555544555555555555


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCc
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNA  225 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  225 (766)
                      |+|++|++++..|..+..+++|++|+|++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            5555555554445555555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=7.6e-19  Score=181.74  Aligned_cols=171  Identities=22%  Similarity=0.292  Sum_probs=119.7

Q ss_pred             CCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      ++.++..++++.|.+.+..  .+..+++|++|++++|.++ .+| .+..+++|++|+|++|++++..|  +.++++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            4566777778888776543  4778888888888888886 355 67778888888888888876544  7788888888


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCc
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP  275 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p  275 (766)
                      +|++|++++ +|....  ++|+.|+|++|++++ ++.+..+++|++|++++|++++                      +|
T Consensus        91 ~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~----------------------~~  144 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS----------------------IV  144 (263)
T ss_dssp             ECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB----------------------CG
T ss_pred             ECCCCccCC-cCcccc--CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC----------------------Ch
Confidence            888888775 333222  777777777777775 3556677777777776666542                      22


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCccc
Q 004232          276 KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS  321 (766)
Q Consensus       276 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~  321 (766)
                       .++.+++|+.|++++|++++.  ..+..+++|+.|+|++|.+++.
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             456677777777777777776  4566677777777777777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=3.9e-18  Score=171.47  Aligned_cols=133  Identities=23%  Similarity=0.237  Sum_probs=122.1

Q ss_pred             CCCEEecccccccccCC-ccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          119 SLRVLSLVSLGIWGSLP-DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p-~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      .++.|+|++|.+++..| ..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            46899999999998865 46899999999999999999888889999999999999999999988889999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~  251 (766)
                      ++|++++..|..|..+++|++|+|++|++++..|. +..+++|++|++++|.+..
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            99999999999999999999999999999988664 8889999999999998765

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.76  E-value=1.1e-18  Score=179.86  Aligned_cols=138  Identities=13%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             CCcCCceecCCceeEEEEEe-cCCce--EEEEEccCChh------------------------hhHHHHHHHHHHHHhCC
Q 004232          485 FDMSAIMGEGSYGKLYKGRL-ENGTS--VAIRCLPSSKK------------------------YTVRNLKLRLDLLAKLR  537 (766)
Q Consensus       485 f~~~~~lG~G~fg~Vy~~~~-~~g~~--vAvK~l~~~~~------------------------~~~~~~~~e~~~l~~l~  537 (766)
                      |++.+.||+|+||.||+|+. .+|+.  ||||+++....                        .....+.+|+.+|++++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999997 68999  99998754311                        11236788999999998


Q ss_pred             CCCcccccceeecCCCCCCcCcceEEEEEEccCC-C----ChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCC
Q 004232          538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSN-G----NFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLH-TGVI  611 (766)
Q Consensus       538 Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~-G----sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~  611 (766)
                      |+++.-...+...          ..+|||||+.+ |    +|.++...      .++.....++.+++.||.||| +.  
T Consensus       129 ~~~i~~p~~~~~~----------~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~--  190 (258)
T 1zth_A          129 EAGVSVPQPYTYM----------KNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA--  190 (258)
T ss_dssp             HTTCCCCCEEEEE----------TTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS--
T ss_pred             hCCCCCCeEEEcC----------CCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC--
Confidence            8865222212111          35899999952 5    56554432      123356788999999999999 76  


Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                       +|+||||||+|||++.  .+||+|||+|...
T Consensus       191 -givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          191 -ELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             -CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             -CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence             8999999999999998  9999999998653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=4.2e-18  Score=168.11  Aligned_cols=154  Identities=19%  Similarity=0.305  Sum_probs=120.5

Q ss_pred             cccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCC
Q 004232          137 KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL  216 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  216 (766)
                      ....+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..+++|
T Consensus        39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            3477888999999999997 566 6889999999999999664  34578889999999999999988788888889999


Q ss_pred             CEEEccCCccCCCCC-CCCCCCCCCEEECCCCC-CCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcC
Q 004232          217 SDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNK-LDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNAL  294 (766)
Q Consensus       217 ~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l  294 (766)
                      ++|+|++|.+++..| .+..+++|++|++++|. ++                      .+| .+..+++|+.|++++|++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~----------------------~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT----------------------DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC----------------------CCG-GGGGCSSCCEEECTTBCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc----------------------ccH-hhcCCCCCCEEECCCCCC
Confidence            999999998887444 37778888888888776 43                      233 467778888888888888


Q ss_pred             CCCCccccCCCCCCCeEEeecCcCc
Q 004232          295 RGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       295 ~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      ++.+  .+..+++|+.|++++|++.
T Consensus       172 ~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          172 HDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCCT--TGGGCSSCCEEEECBC---
T ss_pred             cChH--HhccCCCCCEEEeeCcccC
Confidence            8755  5677788888888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=4.1e-18  Score=176.25  Aligned_cols=177  Identities=19%  Similarity=0.287  Sum_probs=136.4

Q ss_pred             ccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCcccc
Q 004232          132 GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQ  211 (766)
Q Consensus       132 ~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  211 (766)
                      ..+|+.  ++.++..++++.|.+++ ++ .+..+++|++|++++|.++. +| .+..+++|++|+|++|++++..|  +.
T Consensus        11 ~~~pd~--~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~   82 (263)
T 1xeu_A           11 QVFPDP--GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LK   82 (263)
T ss_dssp             HHCCSH--HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             HhCCCH--HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hc
Confidence            344543  56677888888888864 33 57788888888888888874 45 67788888888888888886444  88


Q ss_pred             CCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccC
Q 004232          212 RISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSF  291 (766)
Q Consensus       212 ~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~  291 (766)
                      .+++|++|+|++|++++ +|.+.. ++|++|++++|+++                     + +| .++.+++|+.|++++
T Consensus        83 ~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~---------------------~-~~-~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELR---------------------D-TD-SLIHLKNLEILSIRN  137 (263)
T ss_dssp             TCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCS---------------------B-SG-GGTTCTTCCEEECTT
T ss_pred             cCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCccC---------------------C-Ch-hhcCcccccEEECCC
Confidence            88888888888888876 344433 66777766666554                     2 23 478899999999999


Q ss_pred             CcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccC
Q 004232          292 NALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGG  345 (766)
Q Consensus       292 N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~  345 (766)
                      |++++.+  .+..+++|+.|+|++|++++.  ..+..+.+|+.|++++|.+++.
T Consensus       138 N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          138 NKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999874  588899999999999999876  6678888999999999998855

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=8.8e-19  Score=206.91  Aligned_cols=219  Identities=17%  Similarity=0.065  Sum_probs=119.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCC-----EEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLE-----YLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      +.++.|+|..|.+... |..+.....|.     .++++.|++. ..|..+..+.+|+.|+|++|.+. .+|..+.++++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4578888888888663 44332222222     2333444443 56788999999999999999998 678777799999


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcC
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSF  270 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l  270 (766)
                      ++|+|++|+|+ .+|..|++|++|++|+|++|.|+..++.++.|++|++|+|++|.|+.....+  ..+|+.|+|++|.|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            99999999999 8999999999999999999999955456899999999999999997433333  35789999999999


Q ss_pred             ccCCcccccCCCC-CCEEEccCCcCCCCCccccCCCCCCCeEEeecC--------cCcccCCccCCCCCCccEEeCcCCc
Q 004232          271 SGEIPKQYGQLNQ-LQQLDMSFNALRGMPPPAIFSLPNISDLNLASN--------KFSGSLPKNLNCGGKLVFFDISNNK  341 (766)
Q Consensus       271 ~~~~p~~~~~l~~-L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~g~~p~~~~~~~~L~~L~ls~N~  341 (766)
                      ++.+|..+..+.. +..|+|++|.+++.+|.      .|..|++++|        .|.+..+..+..+..+....+++|.
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni  402 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT  402 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------C
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence            9999988866532 23478999999998885      4556677776        3444444445566667778888888


Q ss_pred             cccCC
Q 004232          342 LTGGL  346 (766)
Q Consensus       342 l~g~~  346 (766)
                      +.+..
T Consensus       403 l~~~~  407 (727)
T 4b8c_D          403 LCQHY  407 (727)
T ss_dssp             CCGGG
T ss_pred             ccccc
Confidence            76443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=5.2e-19  Score=202.58  Aligned_cols=172  Identities=19%  Similarity=0.227  Sum_probs=107.8

Q ss_pred             CCCcccCCcccccccCCCCCCEEeccccc-------------ccccCCccccCCCCCCEEe-cccccCccCCCc------
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVSLG-------------IWGSLPDKIHRLYSLEYLD-LSSNFLFGSVPP------  160 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~L~~L~~L~-Ls~N~l~~~~p~------  160 (766)
                      ++.|.+ ..+|+++++|++|+.|++++|.             +.+.+|..+++|++|+.|+ ++.|.+.. ++.      
T Consensus       356 Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n  433 (567)
T 1dce_A          356 LSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLEN  433 (567)
T ss_dssp             CCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHH
T ss_pred             CChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhhhhhhcc
Confidence            444433 4789999999999999998775             6788889999999999999 66664421 110      


Q ss_pred             cCCC--CCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCC
Q 004232          161 KIST--MVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGS  238 (766)
Q Consensus       161 ~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~  238 (766)
                      .+..  ...|+.|+|++|.+++ +|. |+++++|+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +|.++.+++
T Consensus       434 ~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~  509 (567)
T 1dce_A          434 SVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPR  509 (567)
T ss_dssp             HHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSS
T ss_pred             cccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCC
Confidence            0000  0135666666666664 454 666666666666666666 556666666666666666666665 345555555


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC-cccccCCCCCCEEEccCCcCCCCCc
Q 004232          239 LNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI-PKQYGQLNQLQQLDMSFNALRGMPP  299 (766)
Q Consensus       239 L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~~  299 (766)
                      |++|+|++|++++                     .. |..|+.+++|+.|+|++|.+++.+|
T Consensus       510 L~~L~Ls~N~l~~---------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          510 LQELLLCNNRLQQ---------------------SAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCEEECCSSCCCS---------------------SSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CcEEECCCCCCCC---------------------CCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5555555544432                     22 5556666666666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.2e-16  Score=157.01  Aligned_cols=129  Identities=25%  Similarity=0.300  Sum_probs=99.4

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCc-cCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP-KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      +.+++++|++ +.+|..+..  +|++|+|++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5677777777 456665543  788888888888765554 377888888888888888887788888888888888888


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCC
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSN  252 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~  252 (766)
                      |+|++..|..|..+++|++|+|++|++++.+|. +..+++|++|+|++|.+++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            888877777788888888888888888877664 67788888888888777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=5e-17  Score=155.94  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             CCCCCCEEeccccccc-ccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          116 RLTSLRVLSLVSLGIW-GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~-~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      ..++|+.|+|++|.+. +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+.++++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4478999999999998 78999999999999999999999865  78999999999999999999888998989999999


Q ss_pred             EEccCccCCCCC-CccccCCCCCCEEEccCCccCCCCC----CCCCCCCCCEEECCCCCCCC
Q 004232          195 LSMRNNKLAGPF-PSSIQRISTLSDLDLSKNAISGSLP----DLSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       195 L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~l~~L~~L~ls~N~l~~  251 (766)
                      |+|++|++++.. +..+..+++|+.|+|++|.+++..+    .+..+++|++|++++|.+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999998642 2789999999999999999998777    58899999999999998754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=2.5e-17  Score=161.85  Aligned_cols=113  Identities=24%  Similarity=0.286  Sum_probs=107.1

Q ss_pred             CCCEEecccccccccCCc-cccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          119 SLRVLSLVSLGIWGSLPD-KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       119 ~L~~L~L~~n~l~~~~p~-~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      +|++|+|++|.+.+..|. .|+++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            899999999999887775 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP  231 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  231 (766)
                      ++|++++.+|..|..+++|++|+|++|.+++..+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999999999999999999999997655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=2.5e-19  Score=207.68  Aligned_cols=130  Identities=14%  Similarity=0.116  Sum_probs=70.1

Q ss_pred             ccCCCCCCEEeccccccccc----CCccccCCCCCCEEecccccCc----cCCCccCCCCCCCCEEEccCCcCCCCCCcc
Q 004232          114 LARLTSLRVLSLVSLGIWGS----LPDKIHRLYSLEYLDLSSNFLF----GSVPPKISTMVKLQTLILDDNFFNNTIPNW  185 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~----~p~~~~~L~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  185 (766)
                      ..++++|++|+|++|.+.+.    ++..+.++++|++|+|++|.++    +.++..+.++++|++|+|++|.+.+ +|..
T Consensus       160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~  238 (592)
T 3ogk_B          160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF  238 (592)
T ss_dssp             HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred             HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence            34667777777777766554    3334556666666777666665    2233444556666666666665543 2333


Q ss_pred             cC---------------------------CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-C-CCCC
Q 004232          186 FD---------------------------SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-D-LSSL  236 (766)
Q Consensus       186 ~~---------------------------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~-~~~l  236 (766)
                      +.                           .+++|+.|+++++. .+.+|..+..+++|++|+|++|.+++... . +..+
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~  317 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC  317 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence            33                           33333334333322 23455556666777777777776543221 1 2444


Q ss_pred             CCCCEEECC
Q 004232          237 GSLNVLNLS  245 (766)
Q Consensus       237 ~~L~~L~ls  245 (766)
                      ++|++|+++
T Consensus       318 ~~L~~L~L~  326 (592)
T 3ogk_B          318 PNLEVLETR  326 (592)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCCEEecc
Confidence            445555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=2.2e-16  Score=151.33  Aligned_cols=108  Identities=21%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             CCCCCCEEecccccCc-cCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCE
Q 004232          140 RLYSLEYLDLSSNFLF-GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD  218 (766)
Q Consensus       140 ~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  218 (766)
                      ..++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3477899999999987 67888888888999999999988865  67888888888888888888777777777888888


Q ss_pred             EEccCCccCCCC--CCCCCCCCCCEEECCCCCC
Q 004232          219 LDLSKNAISGSL--PDLSSLGSLNVLNLSDNKL  249 (766)
Q Consensus       219 L~Ls~N~l~~~~--p~~~~l~~L~~L~ls~N~l  249 (766)
                      |+|++|.+++..  +.+..+++|++|++++|.+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            888888877643  3355555555555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=6.2e-17  Score=151.93  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=116.4

Q ss_pred             CCCCCCEEeccccccc-ccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          116 RLTSLRVLSLVSLGIW-GSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~-~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      ..++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++.  ..+.++++|++|+|++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 88999999999999999999999865  78999999999999999999889999989999999


Q ss_pred             EEccCccCCCC-CCccccCCCCCCEEEccCCccCCCCC----CCCCCCCCCEEECCC
Q 004232          195 LSMRNNKLAGP-FPSSIQRISTLSDLDLSKNAISGSLP----DLSSLGSLNVLNLSD  246 (766)
Q Consensus       195 L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~l~~L~~L~ls~  246 (766)
                      |++++|++++. .|..+..+++|++|++++|.+++..+    .+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999874 45889999999999999999998776    378899999998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=3.4e-18  Score=198.18  Aligned_cols=265  Identities=11%  Similarity=0.013  Sum_probs=189.1

Q ss_pred             CCcccCCcccccccCC--CCCCEEeccccc-cc-ccCCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEc
Q 004232          102 SENFSIDSFVTTLARL--TSLRVLSLVSLG-IW-GSLPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLIL  173 (766)
Q Consensus       102 ~~n~~~~~~~~~l~~l--~~L~~L~L~~n~-l~-~~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L  173 (766)
                      +.+...+..+..++.+  .+|++|+|++|. +. ..++..+.++++|++|+|++|.+++.    ++..+.++++|++|+|
T Consensus       120 ~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L  199 (592)
T 3ogk_B          120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF  199 (592)
T ss_dssp             ESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEEC
T ss_pred             eccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEe
Confidence            3343334444556553  459999999886 21 12334455899999999999998765    4445678899999999


Q ss_pred             cCCcCCC----CCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCC----CCCCCCCCCCCCEEECC
Q 004232          174 DDNFFNN----TIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG----SLPDLSSLGSLNVLNLS  245 (766)
Q Consensus       174 ~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~l~~L~~L~ls  245 (766)
                      ++|.+++    .++..+.++++|++|+|++|.+.+ +|..+..+++|+.|+++.+....    ....+..+++|+.|+++
T Consensus       200 ~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (592)
T 3ogk_B          200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS  278 (592)
T ss_dssp             TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred             eccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence            9999983    455567789999999999999986 77889999999999998643321    11246778899999998


Q ss_pred             CCCCCCCCCCC---CCCCcEEEccCCcCccCCc-ccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEee-------
Q 004232          246 DNKLDSNLPKL---PRGLVMAFLSNNSFSGEIP-KQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA-------  314 (766)
Q Consensus       246 ~N~l~~~~p~~---~~~l~~l~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~-------  314 (766)
                      ++.. +.+|..   ..+|+.|++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|+.|+|+       
T Consensus       279 ~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~  357 (592)
T 3ogk_B          279 YMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG  357 (592)
T ss_dssp             TCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred             ccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence            8632 334433   3478999999999876543 456889999999998443333344444567889999999       


Q ss_pred             ----cCcCccc-CCccCCCCCCccEEeCcCCccccCCCCCCCC-CCCCceeecC----CCcCCC
Q 004232          315 ----SNKFSGS-LPKNLNCGGKLVFFDISNNKLTGGLPSCLSN-ESDKRVVKFR----GNCLSS  368 (766)
Q Consensus       315 ----~N~l~g~-~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~-~~~l~~l~l~----~N~l~~  368 (766)
                          .|.+++. ++.....+++|+.|+++.|++++..+..+.. +++|+.|++.    .|.+++
T Consensus       358 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             TSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             cccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence                3666543 2222345788999999888888766655554 7788888885    556654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=3.5e-15  Score=144.33  Aligned_cols=132  Identities=26%  Similarity=0.294  Sum_probs=99.6

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      .+.+++++|++.. +|..+  .++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4567777777743 45433  36788888888888766666678888888888888888877667778888888888888


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCC
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLP  254 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p  254 (766)
                      |++++..+..+..+++|++|+|++|.+++.++. +..+++|++|++++|.+++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888876666778888888888888888866655 4678888888888887766443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.4e-15  Score=146.61  Aligned_cols=126  Identities=25%  Similarity=0.284  Sum_probs=88.6

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      +++++++|++. .+|..+.  ++|++|+|++|+|+ .+|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35666666664 4554432  46777777777775 56677777777777777777777766677777777777777777


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCC
Q 004232          201 KLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~  250 (766)
                      +|++..|..|..+++|++|+|++|.+++..+. +..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77776666777777777777777777765554 666777777777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.8e-16  Score=144.77  Aligned_cols=129  Identities=20%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             CCCCCCEEecccccCc-cCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCE
Q 004232          140 RLYSLEYLDLSSNFLF-GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD  218 (766)
Q Consensus       140 ~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  218 (766)
                      ..++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++.  ..++++++|++|+|++|++++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3478999999999998 78999999999999999999999976  78999999999999999999888988888999999


Q ss_pred             EEccCCccCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCc---ccccCCCCCCEEEccC
Q 004232          219 LDLSKNAISGSL--PDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP---KQYGQLNQLQQLDMSF  291 (766)
Q Consensus       219 L~Ls~N~l~~~~--p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p---~~~~~l~~L~~L~ls~  291 (766)
                      |++++|.+++..  +.+..+++|++|++++|.+++                     ..+   ..++.+++|+.||+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~---------------------~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN---------------------LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG---------------------STTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc---------------------hHHHHHHHHHHCCCcccccCCC
Confidence            999999998743  568889999999888877653                     333   4678888999988864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=7.1e-15  Score=144.30  Aligned_cols=128  Identities=18%  Similarity=0.285  Sum_probs=109.6

Q ss_pred             CEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          240 NVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       240 ~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +++++++|.++..+..++..++.|++++|+++ .+|..|..+++|+.|+|++|+++++++..|.++++|+.|+|++|+|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            45666666665444445566777777777776 67889999999999999999999999999999999999999999999


Q ss_pred             ccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          320 GSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       320 g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +..|..|..+++|+.|+|++|++++..+..+..+++|+.+++++|.+.+
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888899999999999999999997777788999999999999998874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.6e-15  Score=162.27  Aligned_cols=193  Identities=13%  Similarity=0.134  Sum_probs=115.3

Q ss_pred             CCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccC---CCCC--CCCCCCCC
Q 004232          165 MVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAIS---GSLP--DLSSLGSL  239 (766)
Q Consensus       165 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p--~~~~l~~L  239 (766)
                      +++|+.|+|.+ .++..-+.+|.++++|+.|++.+|.++...+..|..+.++..+.+..+...   ..+.  .+.++.+|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66666666666 565555556666666666666666666555556666555555554442210   0000  12222222


Q ss_pred             C--------------------------EEECCCCCCCCCCC---CCCCCCcEEEccCCcCccCCcccccCCCCCCEEEcc
Q 004232          240 N--------------------------VLNLSDNKLDSNLP---KLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMS  290 (766)
Q Consensus       240 ~--------------------------~L~ls~N~l~~~~p---~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls  290 (766)
                      +                          .+.+.++-....+.   ....+|+.++|++|+++...+..|.++++|+.|+|+
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            2                          22222211000000   013456777777777776666677777788888887


Q ss_pred             CCcCCCCCccccCCCCCCC-eEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceee
Q 004232          291 FNALRGMPPPAIFSLPNIS-DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVK  360 (766)
Q Consensus       291 ~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~  360 (766)
                      +| ++.+.+..|.++++|+ .+++.+ +++..-+..|..+.+|+.+++++|+++...+..|.++++|+.+.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77 7777777777777787 777777 56645556777777788888877777766666777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.2e-14  Score=140.40  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=102.7

Q ss_pred             CEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          240 NVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       240 ~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +.+++++|.++.....++..++.+++++|++++..+..|+.+++|++|++++|++++.++..+..+++|+.|+|++|+++
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence            45555555555444445556666677777777666667888899999999999999888888889999999999999999


Q ss_pred             ccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          320 GSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       320 g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +..+..+..+.+|+.|++++|++++..+..+..+++|+.+++++|.+.+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7777778888999999999999987666667888899999999998875

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.59  E-value=3.4e-15  Score=160.09  Aligned_cols=145  Identities=12%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             CCCcCCceecCCceeEEEEEecCCceEEEEEccCChh--------------hhHHHHHHHHHHHHhCCCCCcccccceee
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKK--------------YTVRNLKLRLDLLAKLRHPHLVCLLGHCI  549 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--------------~~~~~~~~e~~~l~~l~Hpniv~l~g~~~  549 (766)
                      -|++.+.||+|+||.||+|...+|+.||||+++....              ........++++.+...|+|+++++....
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3888999999999999999988999999998753210              00112222223333333444444432211


Q ss_pred             cCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCC
Q 004232          550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH  629 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~  629 (766)
                      ... .+ +.....+|||||+++++|.++...         .....++.|++.+|.|||+.   +||||||||.|||++++
T Consensus       176 ~vp-~p-~~~~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~d  241 (397)
T 4gyi_A          176 PVP-EP-IAQSRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREE  241 (397)
T ss_dssp             SCC-CE-EEEETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEE
T ss_pred             CCC-ee-eeccCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCC
Confidence            100 00 000123799999999998765421         12345788999999999997   89999999999999877


Q ss_pred             C----------cEEEecCCCCcc
Q 004232          630 R----------IAKLSDYGLSIV  642 (766)
Q Consensus       630 ~----------~~kl~DFGla~~  642 (766)
                      +          .+.|.||+-+..
T Consensus       242 gd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          242 KDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             ECSSCTTSEEEEEEECCCTTCEE
T ss_pred             CCcccccccccceEEEEeCCccc
Confidence            6          388999997643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=2.6e-15  Score=145.16  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=113.5

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCC-CCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLY-SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPS  191 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  191 (766)
                      .+.++.+|+.|+|++|.+.. +|. +..+. +|++|+|++|.+++.  +.|..+++|++|+|++|.+++..|..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            46788999999999999985 465 55555 999999999999875  68999999999999999999776666799999


Q ss_pred             CCEEEccCccCCCCCCc--cccCCCCCCEEEccCCccCCCCCC----CCCCCCCCEEECCCCCCC
Q 004232          192 LTFLSMRNNKLAGPFPS--SIQRISTLSDLDLSKNAISGSLPD----LSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       192 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~l~~L~~L~ls~N~l~  250 (766)
                      |++|+|++|+++ .+|.  .+..+++|+.|++++|.++...+.    +..+++|++|++++|.+.
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999996 5666  789999999999999999865443    778999999999988653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=2.3e-17  Score=162.98  Aligned_cols=129  Identities=25%  Similarity=0.303  Sum_probs=78.0

Q ss_pred             ccCCCCCCEEecccccccccCCc------cccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPD------KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFD  187 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~------~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  187 (766)
                      +.....++.++++.+.+.|.+|.      .|..+++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            55566777777777777777776      67777777777777777764 55 6666666666666666666 4555555


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC--CCCCCCCCCEEECCCC
Q 004232          188 SLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP--DLSSLGSLNVLNLSDN  247 (766)
Q Consensus       188 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~ls~N  247 (766)
                      .+++|++|+|++|++++ +| .+..+++|++|+|++|.+++..+  .+..+++|++|++++|
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            55666666666666654 33 45555566666666655553221  2334444444444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=8.5e-15  Score=141.50  Aligned_cols=109  Identities=21%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             cccCCCCCCEEecccccCccCCCccCCCCC-CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCC
Q 004232          137 KIHRLYSLEYLDLSSNFLFGSVPPKISTMV-KLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST  215 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  215 (766)
                      .+.++.+|++|+|++|.++. +|. +..+. +|++|+|++|.+++.  ..|..+++|++|+|++|++++..|..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            46677788888888888863 443 44444 777777777777754  56677777777777777777544444466677


Q ss_pred             CCEEEccCCccCCCCC--CCCCCCCCCEEECCCCCC
Q 004232          216 LSDLDLSKNAISGSLP--DLSSLGSLNVLNLSDNKL  249 (766)
Q Consensus       216 L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~ls~N~l  249 (766)
                      |++|+|++|.++...+  .+..+++|++|++++|.+
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence            7777777666643222  244444455544444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=4.7e-17  Score=160.67  Aligned_cols=154  Identities=25%  Similarity=0.319  Sum_probs=104.4

Q ss_pred             ccCCCCCCEEecccccCccCCCc------cCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCcccc
Q 004232          138 IHRLYSLEYLDLSSNFLFGSVPP------KISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQ  211 (766)
Q Consensus       138 ~~~L~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  211 (766)
                      +....+++.++++.|.++|.+|.      .+..+++|++|+|++|.+++ +| .+.++++|++|++++|+++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45556677777777777776665      67777777777777777775 55 6777777777777777776 5666666


Q ss_pred             CCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCc--ccccCCCCCCEEEc
Q 004232          212 RISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIP--KQYGQLNQLQQLDM  289 (766)
Q Consensus       212 ~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p--~~~~~l~~L~~L~l  289 (766)
                      .+++|++|+|++|++++ +|.+..+++|++|++++|++++                      +|  ..+..+++|++|++
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~----------------------~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN----------------------WGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCC----------------------HHHHHHHTTTTTCSEEEE
T ss_pred             cCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCc----------------------hhHHHHHhcCCCCCEEEe
Confidence            66777777777777775 4456666777777776665542                      11  35666777777777


Q ss_pred             cCCcCCCCCccc----------cCCCCCCCeEEeecCcCc
Q 004232          290 SFNALRGMPPPA----------IFSLPNISDLNLASNKFS  319 (766)
Q Consensus       290 s~N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~  319 (766)
                      ++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            777776665532          56667777665  55554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=2.7e-16  Score=182.15  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=15.3

Q ss_pred             CCCCCEEEccCCcCCCCCccccC-CCCCCCeEEee
Q 004232          281 LNQLQQLDMSFNALRGMPPPAIF-SLPNISDLNLA  314 (766)
Q Consensus       281 l~~L~~L~ls~N~l~~~~~~~~~-~l~~L~~L~L~  314 (766)
                      +++|+.|+++.|.+++.....+. .+++|+.|+|+
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            44455554444444433332332 24455555555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=8.7e-14  Score=133.54  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=62.2

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccC
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  199 (766)
                      .+.|++++|++.. +|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3456666666643 444432  5566666666666655555566666666666666666655555556666666666666


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCccCCC
Q 004232          200 NKLAGPFPSSIQRISTLSDLDLSKNAISGS  229 (766)
Q Consensus       200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  229 (766)
                      |+|++..+..|..+++|++|+|++|.++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            666654444555556666666666555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=4.6e-14  Score=150.87  Aligned_cols=218  Identities=13%  Similarity=0.084  Sum_probs=157.9

Q ss_pred             CCCCCEEeccccccc--------------------ccCCccccC--------CCCCCEEecccccCccCCCccCCCCCCC
Q 004232          117 LTSLRVLSLVSLGIW--------------------GSLPDKIHR--------LYSLEYLDLSSNFLFGSVPPKISTMVKL  168 (766)
Q Consensus       117 l~~L~~L~L~~n~l~--------------------~~~p~~~~~--------L~~L~~L~Ls~N~l~~~~p~~~~~l~~L  168 (766)
                      +++|+.|||++|.+.                    ..-+..|.+        +++|+.|+|.+ +++..-+..|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            788999999999987                    222346778        99999999998 8887777889999999


Q ss_pred             CEEEccCCcCCCCCCcccCCCCCCCEEEccCccC----CCCCCccccCCCCCC-EEEccCCc------------------
Q 004232          169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLS-DLDLSKNA------------------  225 (766)
Q Consensus       169 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~-~L~Ls~N~------------------  225 (766)
                      +.|+|++|.+....+..|.++.++..+.+..+..    ...-+..|.++..|+ .+++....                  
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999999888888999988888887766322    222223344444444 22222110                  


Q ss_pred             --cCCCCC-----CC-CCCCCCCEEECCCCCCCCCCCCCC---CCCcEEEccCCcCccCCcccccCCCCCC-EEEccCCc
Q 004232          226 --ISGSLP-----DL-SSLGSLNVLNLSDNKLDSNLPKLP---RGLVMAFLSNNSFSGEIPKQYGQLNQLQ-QLDMSFNA  293 (766)
Q Consensus       226 --l~~~~p-----~~-~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~l~ls~N~l~~~~p~~~~~l~~L~-~L~ls~N~  293 (766)
                        +.+.+.     .+ ..+++|+.|+|++|+++...+..+   .+|+.++|.+| ++..-+..|.++++|+ .|++.+ +
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence              000000     00 125677777777776654433332   35677777776 6656677899999999 999998 8


Q ss_pred             CCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeC
Q 004232          294 LRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI  337 (766)
Q Consensus       294 l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~l  337 (766)
                      ++.+.+..|.+|++|+.|++++|+++..-+..|..+.+|+.++.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88888899999999999999999999777778999999998863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.48  E-value=1e-16  Score=185.71  Aligned_cols=252  Identities=14%  Similarity=0.087  Sum_probs=143.2

Q ss_pred             ccCCCCCCEEeccccc--ccc-cCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCc-------------
Q 004232          114 LARLTSLRVLSLVSLG--IWG-SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF-------------  177 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~--l~~-~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------  177 (766)
                      ...+++|+.|+|++|.  +.. .++..+.++++|++|+|++|...+.+|..+..+++|++|+++.+.             
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            3466677777777765  211 112223445777777777762222255555566666666544331             


Q ss_pred             -------------CC----CCCCcccCCCCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCC-CCCCC-CCCC
Q 004232          178 -------------FN----NTIPNWFDSLPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISG-SLPDL-SSLG  237 (766)
Q Consensus       178 -------------l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~-~~p~~-~~l~  237 (766)
                                   +.    ..+|..+..+++|++|+|++|.+++... ..+..+++|+.|++++| ++. .++.+ ..++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                         11    1233344467888888888888664322 23457788888888877 321 12222 2467


Q ss_pred             CCCEEECCC---------CCCCCCC----CCCCCCCcEEEccCCcCccCCccccc-CCCCCCEEEcc--C----CcCCCC
Q 004232          238 SLNVLNLSD---------NKLDSNL----PKLPRGLVMAFLSNNSFSGEIPKQYG-QLNQLQQLDMS--F----NALRGM  297 (766)
Q Consensus       238 ~L~~L~ls~---------N~l~~~~----p~~~~~l~~l~ls~N~l~~~~p~~~~-~l~~L~~L~ls--~----N~l~~~  297 (766)
                      +|++|++++         |.+++..    .....+|+.+.++.|.+++..+..+. .+++|+.|+++  +    |.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            788887733         3333210    01124567777777777765555554 47778888877  3    555543


Q ss_pred             Ccc-----ccCCCCCCCeEEeecCcCcccCCccCCC-CCCccEEeCcCCccccCCCCCC-CCCCCCceeecCCCcCC
Q 004232          298 PPP-----AIFSLPNISDLNLASNKFSGSLPKNLNC-GGKLVFFDISNNKLTGGLPSCL-SNESDKRVVKFRGNCLS  367 (766)
Q Consensus       298 ~~~-----~~~~l~~L~~L~L~~N~l~g~~p~~~~~-~~~L~~L~ls~N~l~g~~p~~~-~~~~~l~~l~l~~N~l~  367 (766)
                      +..     .+..+++|+.|+|++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            321     244567777777766 555443333433 5667777777777765433333 34566777777777663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.9e-13  Score=131.64  Aligned_cols=106  Identities=22%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      +.+++++|++ +.+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4556666665 34554443  56666666666666555666666666666666666666554445566666666666666


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCccCCC
Q 004232          201 KLAGPFPSSIQRISTLSDLDLSKNAISGS  229 (766)
Q Consensus       201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  229 (766)
                      +|++..+..|..+++|++|+|++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            66644444455566666666666655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.9e-13  Score=129.85  Aligned_cols=107  Identities=21%  Similarity=0.264  Sum_probs=70.4

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcC
Q 004232          239 LNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF  318 (766)
Q Consensus       239 L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  318 (766)
                      .+.+++++|.++..+..++..++.|+|++|+|++..|..|+.+++|++|+|++|+|+++++..|..+++|++|+|++|+|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            34556666655543334445555666666666666666777777777777777777777776667777777777777777


Q ss_pred             cccCCccCCCCCCccEEeCcCCccccC
Q 004232          319 SGSLPKNLNCGGKLVFFDISNNKLTGG  345 (766)
Q Consensus       319 ~g~~p~~~~~~~~L~~L~ls~N~l~g~  345 (766)
                      ++..+..+..+.+|+.|+|++|.+++.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            765555666677777777777766643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=7.5e-13  Score=127.45  Aligned_cols=104  Identities=22%  Similarity=0.289  Sum_probs=57.5

Q ss_pred             CEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          240 NVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       240 ~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +.+++++|+++..++.++..++.|+|++|+|++..|..|+.+++|++|+|++|+|+++++..|..+++|+.|+|++|+|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            44555555554333333444445555555555555555666666666666666666665555555666666666666665


Q ss_pred             ccCCccCCCCCCccEEeCcCCccc
Q 004232          320 GSLPKNLNCGGKLVFFDISNNKLT  343 (766)
Q Consensus       320 g~~p~~~~~~~~L~~L~ls~N~l~  343 (766)
                      +..+..+..+++|+.|+|++|.+.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             eeCHHHhccccCCCEEEeCCCCcc
Confidence            443434555555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=1.5e-11  Score=134.51  Aligned_cols=239  Identities=12%  Similarity=0.114  Sum_probs=148.8

Q ss_pred             CCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       117 l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +..++.+.+.+ .+..+-+.+|.+. +|+.++|..| +...-..+|.++ +|+.+.|.+ .+...-+..|.++++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            35555555543 3444444556654 5777776655 544444555553 577777664 45545556667777777777


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCCC--CCCCcEEEccCCcCccC
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKL--PRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~~--~~~l~~l~ls~N~l~~~  273 (766)
                      |.+|+++......|. .++|+.+.|..| ++.... .|.++++|+.+++..| ++..-...  ..+|+.+.+ .|.++..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I  262 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNI  262 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEE
Confidence            777666643334444 466777776643 332211 2566667777776654 22111111  135666666 3445555


Q ss_pred             CcccccCCCCCCEEEccCCcCC-----CCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCC
Q 004232          274 IPKQYGQLNQLQQLDMSFNALR-----GMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPS  348 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~  348 (766)
                      -+..|.++++|+.+++.+|.+.     .+.+..|.+|++|+.++|. |.++..-...|..+.+|+.++|.+| ++..-+.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            5677888888888888887765     4666778888888888888 4466444567777888888888655 6655566


Q ss_pred             CCCCCCCCceeecCCCcCC
Q 004232          349 CLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       349 ~~~~~~~l~~l~l~~N~l~  367 (766)
                      .+.++ +|+.+.+.+|.+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCC
T ss_pred             hCCCC-CCCEEEEcCCCCc
Confidence            77777 8888888887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=6.1e-11  Score=129.70  Aligned_cols=240  Identities=10%  Similarity=0.052  Sum_probs=185.2

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .|.++ +|+.+.|..+ +..+-+.+|.++ +|+.++|.. .+...-+..|.++.+|+.++|++|.++......|. ..+|
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L  205 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI  205 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence            56675 7999999776 766667788884 799999986 67766778899999999999999999976667776 6899


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCC
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNN  268 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N  268 (766)
                      +.+.|.+| ++..-...|.++++|+.++|..| ++..-. .|.+ .+|+.+.+. |.++..-+..   ..+|+.+.+.+|
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence            99999855 77666778999999999999876 432222 2555 789999994 4444322222   357899999888


Q ss_pred             cCc-----cCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccc
Q 004232          269 SFS-----GEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLT  343 (766)
Q Consensus       269 ~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~  343 (766)
                      .+.     ..-+..|..+++|+.+++. |.++.+....|.+|++|+.+.|..| ++..-+..|..+ +|+.+++++|.+.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            775     3456789999999999999 5688888899999999999999665 665556788888 9999999999887


Q ss_pred             cCCCCCCCCCC-CCceeecCCC
Q 004232          344 GGLPSCLSNES-DKRVVKFRGN  364 (766)
Q Consensus       344 g~~p~~~~~~~-~l~~l~l~~N  364 (766)
                      ...+..+..++ .+..+.+..|
T Consensus       359 ~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          359 QVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             BCCCSSCCCSCTTCCEEEECGG
T ss_pred             ccccccccCCCCCccEEEeCHH
Confidence            65555555553 4555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=4.7e-12  Score=136.16  Aligned_cols=101  Identities=20%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             ecccc-cccccCCccccCCCCCCEEeccc-ccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCcc
Q 004232          124 SLVSL-GIWGSLPDKIHRLYSLEYLDLSS-NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNK  201 (766)
Q Consensus       124 ~L~~n-~l~~~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  201 (766)
                      +++++ ++++ +|. |..+++|++|+|++ |+|.+..|..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44444 4432 444 55555555555553 55544444445555555555555555555444445555555555555555


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccC
Q 004232          202 LAGPFPSSIQRISTLSDLDLSKNAIS  227 (766)
Q Consensus       202 l~~~~p~~~~~l~~L~~L~Ls~N~l~  227 (766)
                      |++..|..|..++ |+.|+|++|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            5433333333332 444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.4e-11  Score=132.54  Aligned_cols=105  Identities=23%  Similarity=0.158  Sum_probs=93.0

Q ss_pred             CEEecccc-cCccCCCccCCCCCCCCEEEccC-CcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEcc
Q 004232          145 EYLDLSSN-FLFGSVPPKISTMVKLQTLILDD-NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLS  222 (766)
Q Consensus       145 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  222 (766)
                      ..++++++ +|+ .+|. |..+++|++|+|++ |.|++..|..|++|++|++|+|++|+|++..|..|.+|++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45789988 887 4888 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCEEECCCCCCCC
Q 004232          223 KNAISGSLPDLSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       223 ~N~l~~~~p~~~~l~~L~~L~ls~N~l~~  251 (766)
                      +|+|++.++.......|+.|+|++|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccC
Confidence            99999877764433349999999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.4e-13  Score=149.23  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=50.3

Q ss_pred             CCCCEEecccccccccCCccccC-----CCCCCEEecccccCccCCCccC-CCCCCCCEEEccCCcCCCCCCccc-----
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHR-----LYSLEYLDLSSNFLFGSVPPKI-STMVKLQTLILDDNFFNNTIPNWF-----  186 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~-----L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----  186 (766)
                      ++|+.|+|++|.++......|..     .++|++|||++|.++......+ ..+.+|++|+|++|.++..-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666666665433322222     2466666666666543222222 234455556666555543222222     


Q ss_pred             CCCCCCCEEEccCccCCC----CCCccccCCCCCCEEEccCCcc
Q 004232          187 DSLPSLTFLSMRNNKLAG----PFPSSIQRISTLSDLDLSKNAI  226 (766)
Q Consensus       187 ~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l  226 (766)
                      ...++|++|+|++|.|+.    .++..+..+++|++|+|++|.+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l  195 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL  195 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence            233445555555555432    1222233444444444444444

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.16  E-value=7.8e-11  Score=121.23  Aligned_cols=149  Identities=16%  Similarity=0.100  Sum_probs=112.4

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCC
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~  555 (766)
                      .+......|.....+|.|+++.||+.... +..+++|............+.+|+.+++.+. |..+.++++++.+.+   
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~---   83 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG---   83 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT---
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCC---
Confidence            34455567888888898999999999754 6789999986532222346888999999884 667778888877643   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-------------------------
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV-------------------------  610 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------  610 (766)
                           ..|+||||++|.++.+.+..        ......++.+++++++.||+..                         
T Consensus        84 -----~~~lv~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (263)
T 3tm0_A           84 -----WSNLLMSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDL  150 (263)
T ss_dssp             -----EEEEEEECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTC
T ss_pred             -----ceEEEEEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccc
Confidence                 67999999999999875321        1123467888999999999811                         


Q ss_pred             -------------------------------CCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          611 -------------------------------IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       611 -------------------------------~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                                                     .+.++|+|+++.||+++++..+.|.||+.+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          151 ADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             SCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                                           13589999999999998766677999998743

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=9.4e-13  Score=142.73  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=48.4

Q ss_pred             CCCCCEEecccccCccCCCccCC-----CCCCCCEEEccCCcCCCCCCccc-CCCCCCCEEEccCccCCCCCCccc----
Q 004232          141 LYSLEYLDLSSNFLFGSVPPKIS-----TMVKLQTLILDDNFFNNTIPNWF-DSLPSLTFLSMRNNKLAGPFPSSI----  210 (766)
Q Consensus       141 L~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~----  210 (766)
                      +++|++|+|++|.++......+.     ...+|++|+|++|.++..-...+ ..+++|+.|+|++|+++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35688888888887643333222     22577777777777654322222 234566777777776654322222    


Q ss_pred             -cCCCCCCEEEccCCccC
Q 004232          211 -QRISTLSDLDLSKNAIS  227 (766)
Q Consensus       211 -~~l~~L~~L~Ls~N~l~  227 (766)
                       ...++|+.|+|++|.++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             HSTTCCCCEEECCSSCCH
T ss_pred             HhcCCccceeeCCCCCCC
Confidence             12455556666555554

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.03  E-value=3.6e-10  Score=115.82  Aligned_cols=139  Identities=16%  Similarity=0.113  Sum_probs=98.9

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCc--ccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL--VCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpni--v~l~g~~~~~~~~~~~~~  559 (766)
                      ..++.+..+.+.|..+.||+....+|..+++|.....   ....+.+|+.+++.+.+.++  .+++++..+.+       
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~-------   88 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAG-------   88 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSS-------
T ss_pred             cCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCC-------
Confidence            3445544444466679999998777888999987654   22457789999988865454  45777665442       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----------------------------
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV-----------------------------  610 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------  610 (766)
                       ..++||||+++.++.  ...      .+   ...++.++++.++.||+..                             
T Consensus        89 -~~~~v~e~i~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (264)
T 1nd4_A           89 -RDWLLLGEVPGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQD  156 (264)
T ss_dssp             -CEEEEEECCSSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTT
T ss_pred             -CCEEEEEecCCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccch
Confidence             579999999998884  211      11   2356677788888888642                             


Q ss_pred             --------------------------CCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          611 --------------------------IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       611 --------------------------~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                                                .+.++|+|++|.||+++++..++|.|||.+..
T Consensus       157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          157 DLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             SCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             hhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                                      12389999999999998876678999998744

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.82  E-value=5.3e-08  Score=106.34  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCc---------------
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF---------------  177 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---------------  177 (766)
                      +|.++++|+.+.|.. .+..+-..+|.++++|+.++|..| +...-...|.++.+|+.+.+..+-               
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence            345555555555543 243333445555555555555433 332233344445554444433220               


Q ss_pred             ------CCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCC
Q 004232          178 ------FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN  224 (766)
Q Consensus       178 ------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  224 (766)
                            ....-...|.++++|+.+.+.++- ...-...|.++++|+.+++..|
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC
Confidence                  011112345566666666665442 2233344555666666665544

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.82  E-value=1e-08  Score=110.48  Aligned_cols=145  Identities=15%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEcc--CCh-hhhHHHHHHHHHHHHhCC--CCCcccccceeecCCCCCCcCcceE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLP--SSK-KYTVRNLKLRLDLLAKLR--HPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~--~~~-~~~~~~~~~e~~~l~~l~--Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .+.++.|.++.||+....+ ..+++|+..  ... ......+.+|..+++.+.  +..+.++++++.+...     ....
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~-----~g~~  116 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV-----IGRA  116 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT-----TSSC
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc-----cCCe
Confidence            4568999999999998765 567788775  332 123456888999999887  4557788888765421     1246


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--------------------------------
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV--------------------------------  610 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--------------------------------  610 (766)
                      ++||||+++..+.+...     ..++..++..++.++++.|+.||+..                                
T Consensus       117 ~~vme~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (359)
T 3dxp_A          117 FYIMEFVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET  191 (359)
T ss_dssp             EEEEECCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence            89999999988754221     22677888889999999999999731                                


Q ss_pred             -----------------------CCCcccCCCCCCceEEcCCCc--EEEecCCCCccc
Q 004232          611 -----------------------IPGFFNNRVKTNNILLNEHRI--AKLSDYGLSIVS  643 (766)
Q Consensus       611 -----------------------~~~ivHrdlk~~NILld~~~~--~kl~DFGla~~~  643 (766)
                                             .+.++|+|+++.||+++.++.  +.|.||+.+...
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                   246899999999999997653  689999998653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=4.5e-10  Score=120.68  Aligned_cols=82  Identities=18%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             ccCCCCCCEEecccccCc---------cCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCc
Q 004232          138 IHRLYSLEYLDLSSNFLF---------GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPS  208 (766)
Q Consensus       138 ~~~L~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  208 (766)
                      +..+++|+.|.+..+...         +.++..+..+++|+.|.|++|.-. .+|. + .+++|++|+|..|.++.....
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            444556666665443221         122333344555555555554211 1222 2 245555555555554322222


Q ss_pred             ccc--CCCCCCEEEcc
Q 004232          209 SIQ--RISTLSDLDLS  222 (766)
Q Consensus       209 ~~~--~l~~L~~L~Ls  222 (766)
                      .+.  .+++|+.|+|+
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            222  45555555553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.74  E-value=8.4e-08  Score=104.75  Aligned_cols=220  Identities=13%  Similarity=0.070  Sum_probs=141.7

Q ss_pred             CccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCC
Q 004232          135 PDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIS  214 (766)
Q Consensus       135 p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  214 (766)
                      ..+|.++++|+.+++..+. ...-...|.++.+|+.+.+..| +...-...|.+++.|+.+.+..+...  +.......+
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~  230 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT  230 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence            4578888888888887553 3345567888888888888776 55455667888888888887766432  233344456


Q ss_pred             CCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCC
Q 004232          215 TLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFN  292 (766)
Q Consensus       215 ~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~--~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N  292 (766)
                      +|+.+.+..+.-.-.-..+..+..|+.+.+..+...  .....-...+..+....+.+   ....|..+.+|+.+.+..+
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc
Confidence            777777754322111123566777777777665432  10111123344444443332   2345777888888888654


Q ss_pred             cCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCC
Q 004232          293 ALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGN  364 (766)
Q Consensus       293 ~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N  364 (766)
                       ++.+....|.++.+|+.++|..+ ++..-...|..+.+|+.+++..| ++..-...+.++.+|+.+.+..+
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence             66666777888888888888654 55344557778888888888776 66555667788888888877654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=2e-09  Score=115.57  Aligned_cols=87  Identities=14%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             ccccccCCCCCCEEecccccc---------cccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 004232          110 FVTTLARLTSLRVLSLVSLGI---------WGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l---------~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      +..++.++++|+.|.+..+..         .+.++..+..+++|+.|+|++|.-. .+++ +. +++|++|+|..|.++.
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCH
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCCh
Confidence            345677888999999866532         1235566788999999999988411 2444 43 8999999999888764


Q ss_pred             CCCcccC--CCCCCCEEEccC
Q 004232          181 TIPNWFD--SLPSLTFLSMRN  199 (766)
Q Consensus       181 ~~p~~~~--~l~~L~~L~L~~  199 (766)
                      .....+.  .+++|++|+|+.
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEEC
T ss_pred             HHHHHHHHccCCCCcEEEEec
Confidence            3333333  799999999864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.66  E-value=1.9e-08  Score=105.78  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=115.7

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCc--ccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHL--VCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpni--v~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      .+.++.|....||+..    ..+++|.....  .....+.+|.++|+.+. +..+  .+.+++....+     .....|+
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~-----~~~~~~~   93 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSE-----TYQMSFA   93 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCS-----SCSCSCE
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCC-----CCCcceE
Confidence            3568999999999863    46788876432  34567889999998874 3332  23333322211     0113488


Q ss_pred             EEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-----------------------------------
Q 004232          565 VYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG-----------------------------------  609 (766)
Q Consensus       565 v~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----------------------------------  609 (766)
                      ||||++|.++......     .++..++..++.++++.++.||+.                                   
T Consensus        94 vm~~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
T 3sg8_A           94 GFTKIKGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGP  168 (304)
T ss_dssp             EEECCCCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHH
T ss_pred             EEcccCCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcc
Confidence            9999999888653321     255666777777777777777751                                   


Q ss_pred             --------------------CCCCcccCCCCCCceEEcC--CCcEEEecCCCCcccccccccccCCC-----CC------
Q 004232          610 --------------------VIPGFFNNRVKTNNILLNE--HRIAKLSDYGLSIVSEDINSVGGKQE-----DP------  656 (766)
Q Consensus       610 --------------------~~~~ivHrdlk~~NILld~--~~~~kl~DFGla~~~~~~~~~~~~~~-----~~------  656 (766)
                                          ..+.++|+|+++.||++++  ...+.|.||+.+...+.....+....     .+      
T Consensus       169 ~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~  248 (304)
T 3sg8_A          169 QMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKI  248 (304)
T ss_dssp             HHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHH
Confidence                                1245799999999999998  45688999999865432111110000     00      


Q ss_pred             -CcccCCC---------CCCCEeehhHHHHHHhcCCCccc
Q 004232          657 -NSWEMTK---------LEDDVFSFGFMLLESVAGPSVAA  686 (766)
Q Consensus       657 -~~~~~~~---------~~~DV~SfGvil~ElltG~~p~~  686 (766)
                       ..+....         ...+.|++|.++|++.+|..++.
T Consensus       249 l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          249 LNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence             0001111         01478999999999999987653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.54  E-value=3.7e-06  Score=91.61  Aligned_cols=130  Identities=9%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             cccCCCCCCEEeccccc---ccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCC
Q 004232          113 TLARLTSLRVLSLVSLG---IWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSL  189 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~---l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  189 (766)
                      +|.++++|+.+.+..|.   +..+-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|..+
T Consensus        82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c  159 (394)
T 4gt6_A           82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC  159 (394)
T ss_dssp             TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence            56777777777776553   43334456777777777666544 44344456677777777777643 333444566677


Q ss_pred             CCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCC
Q 004232          190 PSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSD  246 (766)
Q Consensus       190 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~  246 (766)
                      .+|+.+.+..+ ++..-...|. ...|+.+.+..+...-....+..+.+|.......
T Consensus       160 ~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~  214 (394)
T 4gt6_A          160 YSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDS  214 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred             cccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccc
Confidence            77777777654 3322223333 3456666665443221122344555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=8.3e-09  Score=105.27  Aligned_cols=67  Identities=24%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             cCCCCCCEEecccccCcc--CCCccCCCCCCCCEEEccCCcCCCCCCcccCCCC--CCCEEEccCccCCCCCC
Q 004232          139 HRLYSLEYLDLSSNFLFG--SVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLP--SLTFLSMRNNKLAGPFP  207 (766)
Q Consensus       139 ~~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p  207 (766)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|+|++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            344555555555555544  2233344455555555555555432  1122222  44444444444444333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=6.7e-09  Score=105.94  Aligned_cols=104  Identities=19%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             ccCCCCCCE--EecccccCc---cCCCccCCCCCCCCEEEccCCcCCC--CCCcccCCCCCCCEEEccCccCCCCCCccc
Q 004232          138 IHRLYSLEY--LDLSSNFLF---GSVPPKISTMVKLQTLILDDNFFNN--TIPNWFDSLPSLTFLSMRNNKLAGPFPSSI  210 (766)
Q Consensus       138 ~~~L~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~  210 (766)
                      |...+.|..  ++++.|+..   +.++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence            455555665  677777432   2222223568899999999999988  5567778899999999999999865  334


Q ss_pred             cCCC--CCCEEEccCCccCCCCCC--------CCCCCCCCEEE
Q 004232          211 QRIS--TLSDLDLSKNAISGSLPD--------LSSLGSLNVLN  243 (766)
Q Consensus       211 ~~l~--~L~~L~Ls~N~l~~~~p~--------~~~l~~L~~L~  243 (766)
                      ..++  +|++|+|++|.+++.+|.        +..+++|+.||
T Consensus       215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4444  899999999998876663        45677888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=2.2e-08  Score=96.94  Aligned_cols=118  Identities=12%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             ccccccCCCCCCEEecccc-ccccc----CCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCCC
Q 004232          110 FVTTLARLTSLRVLSLVSL-GIWGS----LPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFNN  180 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n-~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  180 (766)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...++|++|+|++|.|+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445777888999999888 77532    445566778888888888887532    33445556778888888887764


Q ss_pred             C----CCcccCCCCCCCEEEc--cCccCCCC----CCccccCCCCCCEEEccCCccC
Q 004232          181 T----IPNWFDSLPSLTFLSM--RNNKLAGP----FPSSIQRISTLSDLDLSKNAIS  227 (766)
Q Consensus       181 ~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  227 (766)
                      .    +...+...++|++|+|  ++|.++..    +...+...++|++|+|++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    3445566677777777  66776532    2233444566777777766653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.29  E-value=5.4e-05  Score=81.73  Aligned_cols=240  Identities=9%  Similarity=0.004  Sum_probs=129.6

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      +|.++++|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+..+ +...-...|.+. +|
T Consensus        64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l  137 (379)
T 4h09_A           64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SV  137 (379)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CC
T ss_pred             HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccccccccc-ee
Confidence            5778888888888643 555555567776 5777766543 43223333433 47888877654 222222333333 34


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCC------------------------------------CCCCCCCC
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG------------------------------------SLPDLSSL  236 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------------------------------~~p~~~~l  236 (766)
                      +.+.+..+ ++..-...|..+..|+.+.+..+....                                    ....+...
T Consensus       138 ~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~  216 (379)
T 4h09_A          138 KRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYG  216 (379)
T ss_dssp             CEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTC
T ss_pred             eeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccc
Confidence            44444332 222333445555666655554432210                                    00112334


Q ss_pred             CCCCEEECCCCCCCCCCCC---CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEe
Q 004232          237 GSLNVLNLSDNKLDSNLPK---LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNL  313 (766)
Q Consensus       237 ~~L~~L~ls~N~l~~~~p~---~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L  313 (766)
                      .+|+.+.+..+- ...-..   -...|..+.+..+ ++..-...|.++.+|+.+.+..+ ++.+....|.++++|+.+.+
T Consensus       217 ~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          217 KNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             cccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            445555443321 100000   1123455555433 33333456667777777777543 55556667777788888888


Q ss_pred             ecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCC
Q 004232          314 ASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       314 ~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~  363 (766)
                      .+|.++..-...|..+.+|+.++|.++ ++..-...+.++++|+.+.+..
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            777776444556777777888877654 5544455677777777766644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.27  E-value=3.4e-05  Score=83.96  Aligned_cols=244  Identities=10%  Similarity=0.076  Sum_probs=153.5

Q ss_pred             cccCCC-CCCEEecccccccccCCccccCCCCCCEEeccccc---CccCCCccCCCCCCCCEEEccCCcCCCCCCcccCC
Q 004232          113 TLARLT-SLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNF---LFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDS  188 (766)
Q Consensus       113 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  188 (766)
                      +|.++. .|+.+.+..+ ++.+-..+|.++.+|+.+.++.|.   ++..-..+|.++.+|+.+.+.++ ++..-...|.+
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            566774 5999999754 666667889999999999998874   55444677889999999888765 55455677899


Q ss_pred             CCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCC-CCCCCCCCCEEECCCCCCCC--CCCCCCCCCcEEEc
Q 004232          189 LPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP-DLSSLGSLNVLNLSDNKLDS--NLPKLPRGLVMAFL  265 (766)
Q Consensus       189 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~l~l  265 (766)
                      +.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++..-. .|. ...|+.+.+..+-..-  ....-...+.....
T Consensus       136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             hcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecc
Confidence            999999999754 34345567889999999999765 321111 233 3578888775542210  00000001111100


Q ss_pred             c---------------------------C---------CcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCC
Q 004232          266 S---------------------------N---------NSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNIS  309 (766)
Q Consensus       266 s---------------------------~---------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~  309 (766)
                      .                           .         +.++..-...|..+.+|+.+.+..+. ..+....|.++++|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~  291 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQ  291 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccc
Confidence            0                           0         11111123356677778888776543 334455677777787


Q ss_pred             eEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCC
Q 004232          310 DLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGN  364 (766)
Q Consensus       310 ~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N  364 (766)
                      .+.+. +.++..-...|..+.+|+.+++..| ++..-...+.++.+|+.+.+..+
T Consensus       292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          292 DIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             cccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            77775 3454333446677777888777654 55444566777777777776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=1.1e-07  Score=92.14  Aligned_cols=118  Identities=13%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             cCCccccCCCCCCEEecccc-cCcc----CCCccCCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEEccCccCC
Q 004232          133 SLPDKIHRLYSLEYLDLSSN-FLFG----SVPPKISTMVKLQTLILDDNFFNNT----IPNWFDSLPSLTFLSMRNNKLA  203 (766)
Q Consensus       133 ~~p~~~~~L~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  203 (766)
                      .+...+...++|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...++|++|+|++|.|+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34456778899999999999 8853    2445667788999999999998642    3344556688999999999987


Q ss_pred             CC----CCccccCCCCCCEEEc--cCCccCCCC-----CCCCCCCCCCEEECCCCCCC
Q 004232          204 GP----FPSSIQRISTLSDLDL--SKNAISGSL-----PDLSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       204 ~~----~p~~~~~l~~L~~L~L--s~N~l~~~~-----p~~~~l~~L~~L~ls~N~l~  250 (766)
                      ..    +...+...++|++|+|  ++|.++..-     ..+...++|++|+|++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            43    3456677788999999  778886421     12445577888888888653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.12  E-value=2.5e-05  Score=81.89  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=86.7

Q ss_pred             CceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCC---CcccccceeecCCCCCCcCcceEEEE
Q 004232          489 AIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP---HLVCLLGHCIDGGGRDDYAVNKVFLV  565 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hp---niv~l~g~~~~~~~~~~~~~~~~~lv  565 (766)
                      +.++.|....||+.    |..+++|....  ......+.+|.++|+.+.+.   .+-+.++++....       ...++|
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~-------g~~~~v   91 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSD-------GNPFVG   91 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTT-------SCEEEE
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCC-------CceEEE
Confidence            45788988899987    56677887432  23456789999999998753   2344555554222       246899


Q ss_pred             EEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------------------------------------
Q 004232          566 YEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG------------------------------------  609 (766)
Q Consensus       566 ~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------------------------------------  609 (766)
                      |||++|..+......     .++..++..++.++++.|+.||+.                                    
T Consensus        92 ~e~i~G~~l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~  166 (306)
T 3tdw_A           92 YRKVQGQILGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDE  166 (306)
T ss_dssp             EECCCSEECHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             EeccCCeECchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccch
Confidence            999999887652110     022223333333333333333321                                    


Q ss_pred             ---------------------CCCCcccCCCCCCceEEcC---CCc-EEEecCCCCcc
Q 004232          610 ---------------------VIPGFFNNRVKTNNILLNE---HRI-AKLSDYGLSIV  642 (766)
Q Consensus       610 ---------------------~~~~ivHrdlk~~NILld~---~~~-~kl~DFGla~~  642 (766)
                                           ..+.++|+|+++.||+++.   ++. +.|.||+.+..
T Consensus       167 ~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          167 SLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             hhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                                 2346799999999999987   355 58999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.96  E-value=0.00053  Score=73.83  Aligned_cols=241  Identities=10%  Similarity=0.038  Sum_probs=145.8

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      ++....+|+.+.+.. +++.+-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            455667788888864 566666678999999999999754 665556677776 7888888755 44444455655 489


Q ss_pred             CEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCC----------------C---
Q 004232          193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSN----------------L---  253 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~----------------~---  253 (766)
                      +.+.+..+- +..-...|.+. +|..+.+..+--.-....+....+++.+.+..+.....                .   
T Consensus       116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             SEEECCTTC-CEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             ccccCCCcc-ccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            999997653 32233344443 57766665442211122356677777776655432110                0   


Q ss_pred             --------CC-----------CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEee
Q 004232          254 --------PK-----------LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLA  314 (766)
Q Consensus       254 --------p~-----------~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~  314 (766)
                              |.           ....+..+.+..+ +...-...|..+.+|+.+.+..+ ++.+....|.++.+|+.+.+.
T Consensus       194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~  271 (379)
T 4h09_A          194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY  271 (379)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence                    00           0012233333221 22223345566677777777654 555556667777777777775


Q ss_pred             cCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCC
Q 004232          315 SNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRG  363 (766)
Q Consensus       315 ~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~  363 (766)
                      .+ +...-...|..+.+|+.+++.++.++..-...+.++.+|+.+.+..
T Consensus       272 ~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          272 AK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            44 4423334566777788888877777655566777777777777654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.82  E-value=0.00011  Score=75.23  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=86.5

Q ss_pred             ceecCCce-eEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcceEEEEE
Q 004232          490 IMGEGSYG-KLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       490 ~lG~G~fg-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      .+..|..| .||+.... ++..+.+|+-...   ....+.+|...|+.+. +--+-++++++.+++        ..++||
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~--------~~~lvm   99 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPD--------DAWLLT   99 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETT--------EEEEEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECC--------eEEEEE
Confidence            45556555 69987754 4567888876533   3456788999888774 222455677777653        579999


Q ss_pred             EccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhc--------------------------------------
Q 004232          567 EFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT--------------------------------------  608 (766)
Q Consensus       567 Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~--------------------------------------  608 (766)
                      |++++.++.+......       ..+..++.+++..|+-||+                                      
T Consensus       100 e~l~G~~~~~~~~~~~-------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEYP-------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN  172 (272)
T ss_dssp             ECCCSEEHHHHHHHCG-------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred             EeeCCccccccccCCH-------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence            9999987765432110       1112233333344444442                                      


Q ss_pred             -------------C----CCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          609 -------------G----VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       609 -------------~----~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                                   .    ..+.++|+|+.+.||++++++.+-|.||+.+..
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI  223 (272)
T ss_dssp             TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence                         1    112379999999999999877777999998744

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.70  E-value=5.4e-05  Score=81.03  Aligned_cols=82  Identities=7%  Similarity=0.069  Sum_probs=52.7

Q ss_pred             Cce-ecCCceeEEEEEec-------CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCC-C--CCcccccceeecCCCC
Q 004232          489 AIM-GEGSYGKLYKGRLE-------NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLR-H--PHLVCLLGHCIDGGGR  554 (766)
Q Consensus       489 ~~l-G~G~fg~Vy~~~~~-------~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~-H--pniv~l~g~~~~~~~~  554 (766)
                      +.| +.|....+|+....       ++..+++|......   ......+.+|..+++.+. +  -.+.++++++.+... 
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~-  104 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV-  104 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT-
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc-
Confidence            456 78889999998764       25678888765432   101245677888887774 2  245567776654320 


Q ss_pred             CCcCcceEEEEEEccCCCChh
Q 004232          555 DDYAVNKVFLVYEFMSNGNFR  575 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~  575 (766)
                          ....++||||+++..+.
T Consensus       105 ----~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          105 ----LGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             ----TSSCEEEEECCCCBCCC
T ss_pred             ----cCCceEEEEecCCCChh
Confidence                02358999999987664

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.59  E-value=0.00032  Score=76.15  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             CCceecCCceeEEEEEec-CCceEEEEEccCChh-------hhHHHHHHHHHHHHhCCC--CCcc-cccceeecCCCCCC
Q 004232          488 SAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-------YTVRNLKLRLDLLAKLRH--PHLV-CLLGHCIDGGGRDD  556 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~~~~e~~~l~~l~H--pniv-~l~g~~~~~~~~~~  556 (766)
                      .+.+|.|.++.||+++.. ++..++||.......       ....++..|.++++.+..  |..+ +++.+  +.+    
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~----  108 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTE----  108 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETT----
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCC----
Confidence            357899999999999754 467899997653211       123456778888887742  3444 44433  221    


Q ss_pred             cCcceEEEEEEccCCC
Q 004232          557 YAVNKVFLVYEFMSNG  572 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~G  572 (766)
                          ..++||||+++.
T Consensus       109 ----~~~lvmE~l~g~  120 (397)
T 2olc_A          109 ----MAVTVMEDLSHL  120 (397)
T ss_dssp             ----TTEEEECCCTTS
T ss_pred             ----ccEEEEEeCCCc
Confidence                348999999874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.42  E-value=3.1e-05  Score=73.17  Aligned_cols=82  Identities=10%  Similarity=0.086  Sum_probs=32.8

Q ss_pred             CCCEEecccccCccCCCccCCCCCCCCEEEccCCc-CCCCCCcccCCC----CCCCEEEccCcc-CCCCCCccccCCCCC
Q 004232          143 SLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF-FNNTIPNWFDSL----PSLTFLSMRNNK-LAGPFPSSIQRISTL  216 (766)
Q Consensus       143 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L  216 (766)
                      +|+.|||+++.++..--..+.++++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34445555444432222233444444444444442 222111112222    245555555542 332111233445555


Q ss_pred             CEEEccCC
Q 004232          217 SDLDLSKN  224 (766)
Q Consensus       217 ~~L~Ls~N  224 (766)
                      +.|+|+++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.38  E-value=0.00091  Score=70.67  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +.++|+|+++.||+++.++.+.|.||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            579999999999999877889999999764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.28  E-value=0.00071  Score=69.90  Aligned_cols=76  Identities=20%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             cCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCC---CcccccceeecCCCCCCcCcceEE
Q 004232          487 MSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP---HLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hp---niv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      -...+|.|..+.||+.+..+|+.|.+|+-..........|.+|...|+.+.-.   -+.+++++  +.          -+
T Consensus        19 ~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~----------~~   86 (288)
T 3f7w_A           19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD----------RT   86 (288)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET----------TE
T ss_pred             EEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--cC----------ce
Confidence            34678999999999999999999999987654433345678899888877422   12333332  21          27


Q ss_pred             EEEEccCCCCh
Q 004232          564 LVYEFMSNGNF  574 (766)
Q Consensus       564 lv~Ey~~~GsL  574 (766)
                      +||||++.+..
T Consensus        87 lv~e~l~~~~~   97 (288)
T 3f7w_A           87 LAMEWVDERPP   97 (288)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEEeecccCC
Confidence            99999987654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.15  E-value=8.7e-05  Score=70.13  Aligned_cols=84  Identities=10%  Similarity=0.060  Sum_probs=63.4

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEeccccc-CccCCCccCCCC----CCCCEEEccCCc-CCCCCCcccCCCCC
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNF-LFGSVPPKISTM----VKLQTLILDDNF-FNNTIPNWFDSLPS  191 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~  191 (766)
                      .+|+.|||+++.++..-=..+.++++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999998865533557899999999999995 543322335554    379999999985 66433345678999


Q ss_pred             CCEEEccCcc
Q 004232          192 LTFLSMRNNK  201 (766)
Q Consensus       192 L~~L~L~~N~  201 (766)
                      |++|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.87  E-value=0.008  Score=62.64  Aligned_cols=138  Identities=12%  Similarity=0.164  Sum_probs=88.1

Q ss_pred             CCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC---CCCcccccceeecCCCCCCcCcceEEE
Q 004232          488 SAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR---HPHLVCLLGHCIDGGGRDDYAVNKVFL  564 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~---Hpniv~l~g~~~~~~~~~~~~~~~~~l  564 (766)
                      .+.|+.|.+..+|+.... +..+++|.....   ....+.+|...|+.+.   ...+.++++++...+        ..++
T Consensus        41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g--------~~~l  108 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQG--------HSFL  108 (312)
T ss_dssp             EEEECCSSSSEEEEEESS-SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSS--------EEEE
T ss_pred             eEEeCCccceeeeEEEEC-CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCC--------ceEE
Confidence            356899999999998764 567778876533   3466888988888773   355677777766542        5799


Q ss_pred             EEEccCCCChhh-----------hhhcCCC-C------------------CCCCHHHHH-----HHHHH-----------
Q 004232          565 VYEFMSNGNFRT-----------HISENTP-G------------------KVLNWSERL-----AVLIG-----------  598 (766)
Q Consensus       565 v~Ey~~~GsL~~-----------~l~~~~~-~------------------~~l~~~~~~-----~i~~~-----------  598 (766)
                      ||||+++..+..           .+|.... .                  -.-+|....     .-..+           
T Consensus       109 vme~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~  188 (312)
T 3jr1_A          109 LLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGN  188 (312)
T ss_dssp             EEECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSC
T ss_pred             EEEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            999999876521           2333211 0                  012565322     11111           


Q ss_pred             ---HHHH-HHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          599 ---VAKA-VQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       599 ---ia~g-L~yLH~-~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                         +... ...|.. ...|.++|+|+.+.|++++.++ +.|.||.
T Consensus       189 ~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          189 IDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             HHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence               1111 233432 2346899999999999999887 8899984

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=96.70  E-value=0.0057  Score=66.76  Aligned_cols=31  Identities=10%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +.++|+|+++.||+++.++ ++|.||+.+...
T Consensus       232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            4799999999999998776 999999988653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0034  Score=56.27  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=27.8

Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777777777777777777777778888887764

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.55  E-value=0.008  Score=62.81  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=86.8

Q ss_pred             cCHHHHHHHhcCCCcC-----CceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCC--ccccc
Q 004232          473 FTLEELKEATNNFDMS-----AIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH--LVCLL  545 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~-----~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpn--iv~l~  545 (766)
                      ++.+++......|.+.     +.|+.|....+|+....+| .+++|......  ..+.+..|+.++..+....  +.+++
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~   83 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPL   83 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCccc
Confidence            4556666666666552     2356688889999987766 56788876521  1234556777766653212  22232


Q ss_pred             ceeecCCCCCCc-CcceEEEEEEccCCCChhh--------------hhhcCC-----CC----CCCCHHHHHHH------
Q 004232          546 GHCIDGGGRDDY-AVNKVFLVYEFMSNGNFRT--------------HISENT-----PG----KVLNWSERLAV------  595 (766)
Q Consensus       546 g~~~~~~~~~~~-~~~~~~lv~Ey~~~GsL~~--------------~l~~~~-----~~----~~l~~~~~~~i------  595 (766)
                      ..   .++.... .....++++||++|..+..              .+|...     +.    ....|.....-      
T Consensus        84 ~~---~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  160 (322)
T 2ppq_A           84 PR---KDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERAD  160 (322)
T ss_dssp             CB---TTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGG
T ss_pred             CC---CCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHH
Confidence            21   0100000 0024689999999865421              122110     00    00124432111      


Q ss_pred             ------HHHHHHHHHHHhcC----CCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          596 ------LIGVAKAVQFLHTG----VIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       596 ------~~~ia~gL~yLH~~----~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                            ...+.+.+++++..    ..+.++|+|+.+.||+++++..+.|.||+.+.
T Consensus       161 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          161 EVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             GTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence                  11244555666532    23478999999999999987666899998764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.53  E-value=0.0005  Score=66.18  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             cccCCCCCCEEecccc-cccc----cCCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCCCC--
Q 004232          113 TLARLTSLRVLSLVSL-GIWG----SLPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFNNT--  181 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n-~l~~----~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--  181 (766)
                      .+.+-+.|+.|+|++| .|..    .+-+.+..-+.|+.|+|++|.|...    +...+..=+.|++|+|+.|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4556678888888875 6632    2344566777888888888887532    223334456778888888877632  


Q ss_pred             --CCcccCCCCCCCEEEccCcc---CCC----CCCccccCCCCCCEEEccCCc
Q 004232          182 --IPNWFDSLPSLTFLSMRNNK---LAG----PFPSSIQRISTLSDLDLSKNA  225 (766)
Q Consensus       182 --~p~~~~~l~~L~~L~L~~N~---l~~----~~p~~~~~l~~L~~L~Ls~N~  225 (766)
                        +-..+..-+.|+.|+|++|.   +..    .+-..+..=++|+.|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence              22334455567777776542   221    122223334566666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.44  E-value=0.0039  Score=55.84  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             EEECCCCCCC--CCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcC
Q 004232          241 VLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNAL  294 (766)
Q Consensus       241 ~L~ls~N~l~--~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l  294 (766)
                      .++.+++.++  ..+..++.+++.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444444444  22223444444455555554444444444444455555444443

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.22  E-value=0.014  Score=60.30  Aligned_cols=30  Identities=13%  Similarity=0.037  Sum_probs=25.2

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      +.++|+|+.+.||+ ..++.+.+.||..+..
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            46899999999999 5667789999988754

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.17  E-value=0.087  Score=54.91  Aligned_cols=145  Identities=10%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             ceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCC--CcccccceeecCCCCCCc-CcceEEEEE
Q 004232          490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHP--HLVCLLGHCIDGGGRDDY-AVNKVFLVY  566 (766)
Q Consensus       490 ~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hp--niv~l~g~~~~~~~~~~~-~~~~~~lv~  566 (766)
                      .++ |....||+....+|+.+++|...... .....+..|..+++.+...  .+.+++..  ++.  ... .....+++|
T Consensus        33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~--~g~--~~~~~~g~~~~l~  106 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAF--NGQ--TLLNHQGFYFAVF  106 (328)
T ss_dssp             EEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCB--TTB--SCEEETTEEEEEE
T ss_pred             eec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeec--CCc--EEEEECCEEEEEE
Confidence            456 77889999887778788899886331 1234566677777766321  23444433  111  000 012468899


Q ss_pred             EccCCCChhh--------------hhhcC---CC---CCCCCHHHH----HHH---------------HHHHHHHHHHHh
Q 004232          567 EFMSNGNFRT--------------HISEN---TP---GKVLNWSER----LAV---------------LIGVAKAVQFLH  607 (766)
Q Consensus       567 Ey~~~GsL~~--------------~l~~~---~~---~~~l~~~~~----~~i---------------~~~ia~gL~yLH  607 (766)
                      ||+++..+..              .+|..   .+   ....++...    ..+               ...+...++.+.
T Consensus       107 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (328)
T 1zyl_A          107 PSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVT  186 (328)
T ss_dssp             ECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            9999855321              01211   00   111233211    000               001112223332


Q ss_pred             c----CCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          608 T----GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       608 ~----~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      .    ...+.++|+|+++.||+++ + .+.|.||+.+..
T Consensus       187 ~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          187 AHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             HHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             HHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            1    1234679999999999999 4 899999987643

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.84  E-value=0.035  Score=58.27  Aligned_cols=33  Identities=12%  Similarity=0.099  Sum_probs=27.7

Q ss_pred             CCCcccCCCCCCceEEcCC----CcEEEecCCCCccc
Q 004232          611 IPGFFNNRVKTNNILLNEH----RIAKLSDYGLSIVS  643 (766)
Q Consensus       611 ~~~ivHrdlk~~NILld~~----~~~kl~DFGla~~~  643 (766)
                      .+.++|||+.+.||+++.+    ..+.|.||+.+...
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            3478999999999999874    67999999987543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.62  E-value=0.0031  Score=60.66  Aligned_cols=112  Identities=12%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             cccCCCCCCEEecccc-cCcc----CCCccCCCCCCCCEEEccCCcCCC----CCCcccCCCCCCCEEEccCccCCCC--
Q 004232          137 KIHRLYSLEYLDLSSN-FLFG----SVPPKISTMVKLQTLILDDNFFNN----TIPNWFDSLPSLTFLSMRNNKLAGP--  205 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~--  205 (766)
                      .+.+-+.|++|+|++| .|..    .+-..+..-+.|+.|+|++|.+..    .+...+..-+.|++|+|++|+|+..  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4556778999999985 6642    133445666788888888888763    2233344557788888888887632  


Q ss_pred             --CCccccCCCCCCEEEccCCcc---CCC----CC-CCCCCCCCCEEECCCCC
Q 004232          206 --FPSSIQRISTLSDLDLSKNAI---SGS----LP-DLSSLGSLNVLNLSDNK  248 (766)
Q Consensus       206 --~p~~~~~l~~L~~L~Ls~N~l---~~~----~p-~~~~l~~L~~L~ls~N~  248 (766)
                        +-..+..-+.|+.|+|++|..   ...    +. .+..-+.|+.|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence              122344445688888875422   210    00 12334566777776553

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=95.56  E-value=0.04  Score=60.15  Aligned_cols=72  Identities=21%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             CceecCCceeEEEEEecC--------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCc-ccccceeecCCCCCCcCc
Q 004232          489 AIMGEGSYGKLYKGRLEN--------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL-VCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpni-v~l~g~~~~~~~~~~~~~  559 (766)
                      ..|+.|-...||+....+        +..+.+|+.....  ....+.+|..+++.+...++ .++++.+.  +       
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~-------  147 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFS--G-------  147 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T-------
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C-------
Confidence            457888889999998753        4678888874321  11344578888887743334 45555432  1       


Q ss_pred             ceEEEEEEccCCCCh
Q 004232          560 NKVFLVYEFMSNGNF  574 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL  574 (766)
                         .+|+||+++.++
T Consensus       148 ---g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 ---GRLEEYIPSRPL  159 (429)
T ss_dssp             ---EEEECCCCEEEC
T ss_pred             ---CEEEEEeCCccc
Confidence               389999986444

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=94.96  E-value=0.045  Score=58.39  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             CceecCCceeEEEEEecC---------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcc-cccceeecCCCCCCcC
Q 004232          489 AIMGEGSYGKLYKGRLEN---------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV-CLLGHCIDGGGRDDYA  558 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv-~l~g~~~~~~~~~~~~  558 (766)
                      ..++.|....+|+....+         +..+.+|........ ......|..+++.+....++ ++++..  .+      
T Consensus        39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~~------  109 (369)
T 3c5i_A           39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--NG------  109 (369)
T ss_dssp             EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--TT------
T ss_pred             EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--CC------
Confidence            356778888999988654         257888876543221 11235677777766433333 455432  21      


Q ss_pred             cceEEEEEEccCCCCh
Q 004232          559 VNKVFLVYEFMSNGNF  574 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL  574 (766)
                          ++||||+++..+
T Consensus       110 ----~~v~e~i~G~~l  121 (369)
T 3c5i_A          110 ----GRIEEWLYGDPL  121 (369)
T ss_dssp             ----EEEEECCCSEEC
T ss_pred             ----cEEEEEecCCcC
Confidence                689999997543

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=94.96  E-value=0.11  Score=57.01  Aligned_cols=73  Identities=15%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             CceecCCceeEEEEEecC-CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCc-ccccceeecCCCCCCcCcceEEEEE
Q 004232          489 AIMGEGSYGKLYKGRLEN-GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL-VCLLGHCIDGGGRDDYAVNKVFLVY  566 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpni-v~l~g~~~~~~~~~~~~~~~~~lv~  566 (766)
                      +.|+.|-...+|+....+ +..+.+|+........ -...+|..+++.+...++ .++++++  .+          .+||
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~--~~----------G~v~  180 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFF--TN----------GRIE  180 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEE--TT----------EEEE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEe--CC----------eEEE
Confidence            467788889999998765 4678888764322111 112578888888865555 3566654  21          2599


Q ss_pred             EccCCCCh
Q 004232          567 EFMSNGNF  574 (766)
Q Consensus       567 Ey~~~GsL  574 (766)
                      ||+++.++
T Consensus       181 e~I~G~~l  188 (458)
T 2qg7_A          181 EFMDGYAL  188 (458)
T ss_dssp             ECCCSEEC
T ss_pred             EeeCCccC
Confidence            99997554

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=94.65  E-value=0.13  Score=55.00  Aligned_cols=141  Identities=18%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             CceecCCceeEEEEEecC--------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCc-ccccceeecCCCCCCcCc
Q 004232          489 AIMGEGSYGKLYKGRLEN--------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL-VCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpni-v~l~g~~~~~~~~~~~~~  559 (766)
                      +.+..|-...+|+....+        +..+.+|+.... ......+.+|..+++.+.-..+ -++++++.  +       
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~-------  125 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E-------  125 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T-------
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C-------
Confidence            456678888899988642        467888875332 1234556688888877742222 44555442  1       


Q ss_pred             ceEEEEEEccCCCChhhh-----------------hhcCCC--CCCCC--HHHHHHHHHHH-------------------
Q 004232          560 NKVFLVYEFMSNGNFRTH-----------------ISENTP--GKVLN--WSERLAVLIGV-------------------  599 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~-----------------l~~~~~--~~~l~--~~~~~~i~~~i-------------------  599 (766)
                         -+||||+++..+..-                 ||....  .+...  |.+..+...++                   
T Consensus       126 ---g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l  202 (379)
T 3feg_A          126 ---GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSL  202 (379)
T ss_dssp             ---EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTH
T ss_pred             ---ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHH
Confidence               289999998655311                 121110  11222  23322222221                   


Q ss_pred             HHHHHHH----hcC-CCCCcccCCCCCCceEEcCC----CcEEEecCCCCcc
Q 004232          600 AKAVQFL----HTG-VIPGFFNNRVKTNNILLNEH----RIAKLSDYGLSIV  642 (766)
Q Consensus       600 a~gL~yL----H~~-~~~~ivHrdlk~~NILld~~----~~~kl~DFGla~~  642 (766)
                      ...+..|    ... ....++|+|+.+.||+++.+    +.+.+.||..+..
T Consensus       203 ~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          203 KDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            1123333    221 22468999999999999876    6899999988743

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=92.90  E-value=0.52  Score=49.37  Aligned_cols=32  Identities=9%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +.++|+|+.+.||++++++.+.|.||+.+...
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~  237 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA  237 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence            46899999999999998788999999877543

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=89.43  E-value=0.67  Score=50.11  Aligned_cols=30  Identities=27%  Similarity=0.443  Sum_probs=25.9

Q ss_pred             CCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          612 PGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       612 ~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ..++|+|+.+.||+ +.++.+.+.||-.+..
T Consensus       262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~  291 (424)
T 3mes_A          262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSAI  291 (424)
T ss_dssp             EEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence            35899999999999 7788999999988743

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=86.92  E-value=0.092  Score=57.78  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=18.9

Q ss_pred             cCCceecCCceeEEEEEecC-CceEEE------EEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeec
Q 004232          487 MSAIMGEGSYGKLYKGRLEN-GTSVAI------RCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCID  550 (766)
Q Consensus       487 ~~~~lG~G~fg~Vy~~~~~~-g~~vAv------K~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~  550 (766)
                      +.+.+|   ||.||+|.+.. ..+|||      |..+...  ......+.+|..+++..+|||+++.++|...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            445666   99999999864 468888      7665432  2234567888999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	766
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	9e-34
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	6e-33
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-33
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-32
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-31
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-31
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	9e-31
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-30
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-30
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-30
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-30
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-29
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-29
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-28
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-27
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-27
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-27
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-27
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	6e-27
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-27
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-26
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-26
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-26
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	6e-26
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-25
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-25
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-25
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	9e-25
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-24
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-24
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-24
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-24
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-23
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-23
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-23
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	7e-23
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-22
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	5e-22
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-22
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-21
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-21
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-21
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-21
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-21
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-19
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-19
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-18
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-18
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	5e-18
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	6e-18
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	9e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-17
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	4e-16
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-14
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-14
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	9e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-12
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 9e-34
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 30/275 (10%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G+G +G +  G    G  VA++C+      T +       ++ +LRH +LV
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLV 63

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            LLG  ++  G        +++V E+M+ G+   ++       VL     L   + V +A
Sbjct: 64  QLLGVIVEEKGG-------LYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEA 115

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEMT 662
           +++L       F +  +   N+L++E  +AK+SD+GL+  +      G       + E  
Sbjct: 116 MEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEAL 172

Query: 663 KLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATS 717
           + +      DV+SFG +L E  +   V              +  ++   R+     M   
Sbjct: 173 REKKFSTKSDVWSFGILLWEIYSFGRV----------PYPRIPLKDVVPRVEKGYKMDAP 222

Query: 718 SLESLSIVISIANKCICSESWSRPSFEDILWNLQY 752
                + V  +   C   ++  RPSF  +   L++
Sbjct: 223 DGCPPA-VYEVMKNCWHLDAAMRPSFLQLREQLEH 256

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 6e-33
 Identities = 48/286 (16%), Positives = 113/286 (39%), Gaps = 34/286 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G GS+G +YKG+     +V +  + +     ++  K  + +L K RH +++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
             +G+             ++ +V ++    +   H+            + + +    A+ 
Sbjct: 68  LFMGYSTA---------PQLAIVTQWCEGSSLYHHLHII--ETKFEMIKLIDIARQTAQG 116

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE-----DPN 657
           + +LH        +  +K+NNI L+E    K+ D+GL+ V    +     ++        
Sbjct: 117 MDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWM 173

Query: 658 SWEMTKLED--------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
           + E+ +++D        DV++FG +L E + G      +  +              +  +
Sbjct: 174 APEVIRMQDKNPYSFQSDVYAFGIVLYELMTG------QLPYSNINNRDQIIFMVGRGYL 227

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ 755
            P +    S    + +  +  +C+  +   RP F  IL +++  A+
Sbjct: 228 SPDLSKVRSNCPKA-MKRLMAECLKKKRDERPLFPQILASIELLAR 272

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 7e-33
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
               +   +G G +G+++ G     T VA++ L      +        +L+ +L+H  LV
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLV 71

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L                 ++++ E+M NG+    +   +  K L  ++ L +   +A+ 
Sbjct: 72  RLYAVVTQ---------EPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEG 121

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED------INSVGGKQEDP 656
           + F+       + +  ++  NIL+++    K++D+GL+ + ED        +    +   
Sbjct: 122 MAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTA 178

Query: 657 NSWEMTKLED---DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
                        DV+SFG +L E V    +              + + E  Q L     
Sbjct: 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP----------YPGMTNPEVIQNLERGYR 228

Query: 714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           M          +  +   C       RP+F+ +   L+
Sbjct: 229 MVRPDNCPEE-LYQLMRLCWKERPEDRPTFDYLRSVLE 265

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 2e-32
 Identities = 52/278 (18%), Positives = 104/278 (37%), Gaps = 34/278 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
            +      +G G +G +  G+      VAI+ +      +         ++  L H  LV
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLV 62

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L G C             +F++ E+M+NG    ++            + L +   V +A
Sbjct: 63  QLYGVCTKQR--------PIFIITEYMANGCLLNYL--REMRHRFQTQQLLEMCKDVCEA 112

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED------INSVGGKQEDP 656
           +++L       F +  +   N L+N+  + K+SD+GLS    D      + S    +  P
Sbjct: 113 MEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP 169

Query: 657 NSWEMTKLED---DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
               M        D+++FG ++ E  +            +   +   + E  + +   + 
Sbjct: 170 PEVLMYSKFSSKSDIWAFGVLMWEIYSLG----------KMPYERFTNSETAEHIAQGLR 219

Query: 714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           +    L S   V +I   C   ++  RP+F+ +L N+ 
Sbjct: 220 LYRPHLASEK-VYTIMYSCWHEKADERPTFKILLSNIL 256

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (308), Expect = 1e-31
 Identities = 61/310 (19%), Positives = 121/310 (39%), Gaps = 51/310 (16%)

Query: 473 FTLEELKEATNNFDMSA---------IMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK 519
           FT E+  EA   F             ++G G +G++  G L    +    VAI+ L S  
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 520 -KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI 578
            +   R+      ++ +  HP+++ L G               V ++ EFM NG+  + +
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS--------TPVMIITEFMENGSLDSFL 118

Query: 579 SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG 638
            +N         + + +L G+A  +++L       + +  +   NIL+N + + K+SD+G
Sbjct: 119 RQND--GQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFG 173

Query: 639 LSIVSED------INSVGGKQE-----DPNSWEMTKLED--DVFSFGFMLLESVAGPSVA 685
           LS   ED        S  G +       P + +  K     DV+S+G ++ E ++     
Sbjct: 174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS----- 228

Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFED 745
                + +     + +Q+    +     +    ++  S +  +   C   +   RP F  
Sbjct: 229 -----YGERPYWDMTNQDVINAIEQDYRL-PPPMDCPSALHQLMLDCWQKDRNHRPKFGQ 282

Query: 746 ILWNLQYAAQ 755
           I+  L    +
Sbjct: 283 IVNTLDKMIR 292

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 3e-31
 Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 34/282 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           +       +G G +G ++ G   N   VAI+ +      +  +     +++ KL HP LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLV 63

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L G C++           + LV+EFM +G    ++       +      L + + V + 
Sbjct: 64  QLYGVCLEQA--------PICLVFEFMEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEG 113

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE-------D 655
              +         +  +   N L+ E+++ K+SD+G++    D                 
Sbjct: 114 ---MAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS 170

Query: 656 PNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
           P  +  ++   + DV+SFG ++ E  +      +     +   + +       RL  P +
Sbjct: 171 PEVFSFSRYSSKSDVWSFGVLMWEVFSE----GKIPYENRSNSEVVEDISTGFRLYKPRL 226

Query: 714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ 755
            +T        V  I N C       RP+F  +L  L   A+
Sbjct: 227 ASTH-------VYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 9e-31
 Identities = 45/296 (15%), Positives = 111/296 (37%), Gaps = 42/296 (14%)

Query: 492 GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDG 551
           G+G +G++++G+   G  VA++   S ++ +    +  +     LRH +++  +      
Sbjct: 12  GKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFR-EAEIYQTVMLRHENILGFIAADNK- 68

Query: 552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVI 611
              D+    +++LV ++  +G+   +++  T    +     + + +  A  +  LH  ++
Sbjct: 69  ---DNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIV 121

Query: 612 -----PGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQED----------- 655
                P   +  +K+ NIL+ ++    ++D GL++  +          +           
Sbjct: 122 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 181

Query: 656 ---PNSWEMTKLEDD----VFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
               +S  M   E      +++ G +  E     S+      +     D + S    + +
Sbjct: 182 EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 241

Query: 709 VDPVVM---------ATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ 755
              V              S E+L ++  I  +C  +   +R +   I   L   +Q
Sbjct: 242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 2e-30
 Identities = 54/278 (19%), Positives = 113/278 (40%), Gaps = 32/278 (11%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPH 540
           ++++   +G GSYG+  K R   +G  +  + L      +   + L   ++LL +L+HP+
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGV 599
           +V      ID           +++V E+   G+  + I++ T   + L+    L V+  +
Sbjct: 65  IVRYYDRIIDRTN------TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL 118

Query: 600 AKAVQFLH--TGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDP 656
             A++  H  +       +  +K  N+ L+  +  KL D+GL+ I++ D +        P
Sbjct: 119 TLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTP 178

Query: 657 NSWEMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
                 ++         D++S G +L E  A                 + + +E   ++ 
Sbjct: 179 YYMSPEQMNRMSYNEKSDIWSLGCLLYELCAL-----------MPPFTAFSQKELAGKIR 227

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           +          S  +   I  + +  + + RPS E+IL
Sbjct: 228 EGKFRRIPYRYSDEL-NEIITRMLNLKDYHRPSVEEIL 264

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 3e-30
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 477 ELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLA 534
           ELK+  ++F+  + +G G+ G ++K     +G  +A + +    K  +RN  +R L +L 
Sbjct: 2   ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           +   P++V   G     G        ++ +  E M  G+    + +      +       
Sbjct: 60  ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGR---IPEQILGK 108

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGK 652
           V I V K + +L         +  VK +NIL+N     KL D+G+S  ++    NS  G 
Sbjct: 109 VSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT 166

Query: 653 QE--DPNSWEMTKL--EDDVFSFGFMLLESVAG 681
           +    P   + T    + D++S G  L+E   G
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (298), Expect = 4e-30
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 36/274 (13%)

Query: 485 FDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYT---VRNLKLRLDLLAKLRHPH 540
           F     +G GS+G +Y  R + N   VAI+ +  S K +    +++   +  L KLRHP+
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
            +   G  +          +  +LV E+              P   L   E  AV  G  
Sbjct: 77  TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 125

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG-----KQED 655
           + + +LH+       +  VK  NILL+E  + KL D+G + +    NS  G       E 
Sbjct: 126 QGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEV 182

Query: 656 PNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
             + +  + +   DV+S G   +E               +  L ++N+      +     
Sbjct: 183 ILAMDEGQYDGKVDVWSLGITCIELAER-----------KPPLFNMNAMSALYHIAQNES 231

Query: 714 MATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
            A  S        +  + C+      RP+ E +L
Sbjct: 232 PALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL 265

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (296), Expect = 4e-30
 Identities = 56/293 (19%), Positives = 112/293 (38%), Gaps = 34/293 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
            +  M   +G G YG++Y+G   +   +VA++ L       V        ++ +++HP+L
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNL 75

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V LLG C              +++ EFM+ GN   ++ E    + ++    L +   ++ 
Sbjct: 76  VQLLGVCTREP--------PFYIITEFMTYGNLLDYLRECNRQE-VSAVVLLYMATQISS 126

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSW 659
           A+++L       F +  +   N L+ E+ + K++D+GLS  +  +   +  G +      
Sbjct: 127 AMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT 183

Query: 660 EMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV 712
               L         DV++FG +L E             +   +L  +        L++  
Sbjct: 184 APESLAYNKFSIKSDVWAFGVLLWEIATY-----GMSPYPGIDLSQV------YELLEKD 232

Query: 713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETADNEQR 765
                       V  +   C       RPSF +I    +   Q    +D  ++
Sbjct: 233 YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEK 285

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-29
 Identities = 50/280 (17%), Positives = 101/280 (36%), Gaps = 37/280 (13%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPH 540
            + +++   +G+G++GK+YK +  E     A + + +  +  + +  + +D+LA   HP+
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V LL              N ++++ EF + G     + E    + L  S+   V     
Sbjct: 71  IVKLLDAFYYE--------NNLWILIEFCAGGAVDAVMLEL--ERPLTESQIQVVCKQTL 120

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS-----VGGKQED 655
            A+ +LH        +  +K  NIL       KL+D+G+S  +          +G     
Sbjct: 121 DALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWM 177

Query: 656 PNSWEMTKLED--------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR 707
                M +           DV+S G  L+E                  +    ++     
Sbjct: 178 APEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN---PMRVLLKIAKSEPPT 234

Query: 708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           L  P   +++             KC+     +R +   +L
Sbjct: 235 LAQPSRWSSN-------FKDFLKKCLEKNVDARWTTSQLL 267

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  117 bits (293), Expect = 1e-29
 Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 60/315 (19%)

Query: 475 LEELKEATNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKL 528
           L  L+   NN +    +GEG++G++++ R       E  T VA++ L       ++    
Sbjct: 5   LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64

Query: 529 R-LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---- 583
           R   L+A+  +P++V LLG C  G          + L++E+M+ G+    +   +P    
Sbjct: 65  REAALMAEFDNPNIVKLLGVCAVG--------KPMCLLFEYMAYGDLNEFLRSMSPHTVC 116

Query: 584 -----------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILL 626
                               L+ +E+L +   VA  + +L       F +  + T N L+
Sbjct: 117 SLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLV 173

Query: 627 NEHRIAKLSDYGLS--IVSEDINSVGGKQ------EDPNSWEMTKL--EDDVFSFGFMLL 676
            E+ + K++D+GLS  I S D     G          P S    +   E DV+++G +L 
Sbjct: 174 GENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLW 233

Query: 677 ESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSE 736
           E  +             +    +  +E    + D  ++A      L  + ++   C    
Sbjct: 234 EIFSY----------GLQPYYGMAHEEVIYYVRDGNILACPENCPLE-LYNLMRLCWSKL 282

Query: 737 SWSRPSFEDILWNLQ 751
              RPSF  I   LQ
Sbjct: 283 PADRPSFCSIHRILQ 297

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 1e-28
 Identities = 56/278 (20%), Positives = 109/278 (39%), Gaps = 34/278 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
            +  +   +G+G +G+++ G     T VAI+ L      +         ++ KLRH  LV
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLV 75

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L     +           +++V E+MS G+    +   T GK L   + + +   +A  
Sbjct: 76  QLYAVVSE---------EPIYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASG 125

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS------VGGKQEDP 656
           + ++       + +  ++  NIL+ E+ + K++D+GL+ + ED             +   
Sbjct: 126 MAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 182

Query: 657 NSWEMTKLED---DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV 713
               +        DV+SFG +L E           G   +E LD +  + G +    P  
Sbjct: 183 PEAALYGRFTIKSDVWSFGILLTELTTK-GRVPYPGMVNREVLDQV--ERGYRMPCPPEC 239

Query: 714 MATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
             +        +  +  +C   E   RP+FE +   L+
Sbjct: 240 PES--------LHDLMCQCWRKEPEERPTFEYLQAFLE 269

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-27
 Identities = 60/292 (20%), Positives = 120/292 (41%), Gaps = 46/292 (15%)

Query: 474 TLEELKEATNNFDMS------AIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL 526
            LE+L+   +  D          +G+G+ G +Y    +  G  VAIR +   ++     +
Sbjct: 5   ILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELI 64

Query: 527 KLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
              + ++ + ++P++V  L   + G        +++++V E+++ G+    ++E      
Sbjct: 65  INEILVMRENKNPNIVNYLDSYLVG--------DELWVVMEYLAGGSLTDVVTETCM--- 113

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDI 646
            +  +  AV     +A++FLH+       +  +K++NILL      KL+D+G        
Sbjct: 114 -DEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE 169

Query: 647 NSVGGKQEDPNSW---EMTKLED-----DVFSFGFMLLESVAG--PSVAARKGQFLQEEL 696
            S          W   E+   +      D++S G M +E + G  P +     + L    
Sbjct: 170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY--- 226

Query: 697 DSLNSQEGRQRLVDPVVMATSSLESLS-IVISIANKCICSESWSRPSFEDIL 747
             L +  G   L +P        E LS I     N+C+  +   R S +++L
Sbjct: 227 --LIATNGTPELQNP--------EKLSAIFRDFLNRCLDMDVEKRGSAKELL 268

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-27
 Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 37/278 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKY-TVRNLKLRLDLLAKLRHPH 540
            ++D+   +GEG+YG++          +VA++ +   +      N+K  + +   L H +
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V   GH  +G        N  +L  E+ S G     I  +     +   +       + 
Sbjct: 65  VVKFYGHRREG--------NIQYLFLEYCSGGELFDRIEPDIG---MPEPDAQRFFHQLM 113

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE------ 654
             V +LH     G  +  +K  N+LL+E    K+SD+GL+ V    N      +      
Sbjct: 114 AGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 170

Query: 655 --DPNSWEMTKLED---DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV 709
              P   +  +      DV+S G +L   +AG     +     QE     +  + ++  +
Sbjct: 171 YVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE----YSDWKEKKTYL 226

Query: 710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           +P     S+  +L       +K +     +R +  DI 
Sbjct: 227 NPWKKIDSAPLAL------LHKILVENPSARITIPDIK 258

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  112 bits (280), Expect = 2e-27
 Identities = 50/275 (18%), Positives = 114/275 (41%), Gaps = 32/275 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
           +++D+   +G G++G +++      G + A + + +  +     ++  +  ++ LRHP L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           V L     D         N++ ++YEFMS G     +++      ++  E +  +  V K
Sbjct: 86  VNLHDAFEDD--------NEMVMIYEFMSGGELFEKVADE--HNKMSEDEAVEYMRQVCK 135

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHR--IAKLSDYGLSIVSEDINSVGGKQEDPN-- 657
            +  +H      + +  +K  NI+    R    KL D+GL+   +   SV          
Sbjct: 136 GLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA 192

Query: 658 SWEMTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV 712
           + E+ + +      D++S G +    ++G  ++   G+   E L ++ S +     +D  
Sbjct: 193 APEVAEGKPVGYYTDMWSVGVLSYILLSG--LSPFGGENDDETLRNVKSCDWN---MDDS 247

Query: 713 VMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
             +  S +    +     K + ++  +R +    L
Sbjct: 248 AFSGISEDGKDFI----RKLLLADPNTRMTIHQAL 278

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 4e-27
 Identities = 52/292 (17%), Positives = 108/292 (36%), Gaps = 41/292 (14%)

Query: 476 EELKEATNNFDMSAI-MGEGSYGKLYKGRL---ENGTSVAIRCL-PSSKKYTVRNLKLRL 530
           ++L    +N  ++ I +G G++G + +G     +    VAI+ L   ++K     +    
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 531 DLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWS 590
            ++ +L +P++V L+G C             + LV E    G     +      + +  S
Sbjct: 61  QIMHQLDNPYIVRLIGVCQA---------EALMLVMEMAGGGPLHKFLVGK--REEIPVS 109

Query: 591 ERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG 650
               +L  V+  +++L       F +  +   N+LL     AK+SD+GLS      +S  
Sbjct: 110 NVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY 166

Query: 651 GKQE---------DPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSL 699
             +           P      K     DV+S+G  + E+++          + Q+    +
Sbjct: 167 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALS----------YGQKPYKKM 216

Query: 700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
              E    +     M          + ++ + C   +   RP F  +   ++
Sbjct: 217 KGPEVMAFIEQGKRMECPPECPPE-LYALMSDCWIYKWEDRPDFLTVEQRMR 267

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 5e-27
 Identities = 50/287 (17%), Positives = 108/287 (37%), Gaps = 44/287 (15%)

Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS---KKYTVRNL 526
           R + LE       +F++   +G+G +G +Y  R  ++   +A++ L  +   K      L
Sbjct: 1   RQWALE-------DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 53

Query: 527 KLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKV 586
           +  +++ + LRHP+++ L G+  D          +V+L+ E+   G     + + +    
Sbjct: 54  RREVEIQSHLRHPNILRLYGYFHDA--------TRVYLILEYAPLGTVYRELQKLSK--- 102

Query: 587 LNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED- 645
            +       +  +A A+ + H+       +  +K  N+LL      K++D+G S+ +   
Sbjct: 103 FDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 159

Query: 646 --INSVGGKQEDPNSWEMTKLED---DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLN 700
                 G     P      ++ D   D++S G +  E + G      K  F         
Sbjct: 160 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG------KPPFEANTYQETY 213

Query: 701 SQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
            +  R     P  +             + ++ +      RP   ++L
Sbjct: 214 KRISRVEFTFPDFVTEG-------ARDLISRLLKHNPSQRPMLREVL 253

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 6e-27
 Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 33/268 (12%)

Query: 492 GEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           G GS+  +YKG   E    VA   L   K  K   +  K   ++L  L+HP++V      
Sbjct: 18  GRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSW 77

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
                        + LV E M++G  +T++      KV+      +    + K +QFLHT
Sbjct: 78  ESTVKGKKC----IVLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT 130

Query: 609 GVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSIVSED--INSVGGKQE--DPNSWEMTK 663
              P   +  +K +NI +       K+ D GL+ +       +V G  E   P   EM +
Sbjct: 131 RT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAP---EMYE 186

Query: 664 ----LEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSL 719
                  DV++FG  +LE          +  +     +  N+ +  +R+   V  A+   
Sbjct: 187 EKYDESVDVYAFGMCMLEMATS------EYPY----SECQNAAQIYRRVTSGVKPASFDK 236

Query: 720 ESLSIVISIANKCICSESWSRPSFEDIL 747
            ++  V  I   CI      R S +D+L
Sbjct: 237 VAIPEVKEIIEGCIRQNKDERYSIKDLL 264

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 7e-27
 Identities = 65/309 (21%), Positives = 122/309 (39%), Gaps = 47/309 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENG---TSVAIRCL-PSSKKYTVRNLKLRLDLLAKL-R 537
           N+     ++GEG++G++ K R++        AI+ +   + K   R+    L++L KL  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISE-------------NTPG 584
           HP+++ LLG C   G         ++L  E+  +GN    + +             N+  
Sbjct: 70  HPNIINLLGACEHRG--------YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 121

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
             L+  + L     VA+ + +L       F +  +   NIL+ E+ +AK++D+GLS   E
Sbjct: 122 STLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE 178

Query: 645 DINSVGGKQEDPNSWEMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELD 697
                   +       +  L         DV+S+G +L E V+                 
Sbjct: 179 VYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSL----------GGTPYC 228

Query: 698 SLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ 757
            +   E  ++L     +          V  +  +C   + + RPSF  IL +L    + +
Sbjct: 229 GMTCAELYEKLPQGYRLEKPLNCDDE-VYDLMRQCWREKPYERPSFAQILVSLNRMLEER 287

Query: 758 ETADNEQRF 766
           +T  N   +
Sbjct: 288 KTYVNTTLY 296

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 1e-26
 Identities = 57/294 (19%), Positives = 112/294 (38%), Gaps = 41/294 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTS-----VAIRCLPSSKKYTVRNLKLR-LDLLAKL 536
           +      ++G G +G++YKG L+  +      VAI+ L +      R   L    ++ + 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 537 RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVL 596
            H +++ L G               + ++ E+M NG     + E       +  + + +L
Sbjct: 67  SHHNIIRLEGVISKY--------KPMMIITEYMENGALDKFLREK--DGEFSVLQLVGML 116

Query: 597 IGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE-- 654
            G+A  +++L       + +  +   NIL+N + + K+SD+GLS V ED           
Sbjct: 117 RGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG 173

Query: 655 -------DPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR 705
                   P +    K     DV+SFG ++ E +              E      S    
Sbjct: 174 KIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYG-----------ERPYWELSNHEV 222

Query: 706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQET 759
            + ++      + ++  S +  +  +C   E   RP F DI+  L    +  ++
Sbjct: 223 MKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 276

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-26
 Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 41/291 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLR 537
              ++   +GEG +G +++G          +VAI+   +    +VR   L+    + +  
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HPH+V L+G   +         N V+++ E  + G  R+ +        L+ +  +    
Sbjct: 67  HPHIVKLIGVITE---------NPVWIIMELCTLGELRSFLQVRKYS--LDLASLILYAY 115

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDIN----SVGGKQ 653
            ++ A+ +L +     F +  +   N+L++ +   KL D+GLS   ED      S G   
Sbjct: 116 QLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLP 172

Query: 654 EDPNSWEMTKLED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
               + E           DV+ FG  + E +        K     +  D +   E  +RL
Sbjct: 173 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHG----VKPFQGVKNNDVIGRIENGERL 228

Query: 709 VDPVVMATSSLESLS-IVISIANKCICSESWSRPSFEDILWNLQYAAQVQE 758
             P         +    + S+  KC   +   RP F ++   L    + ++
Sbjct: 229 PMP--------PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK 271

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 2e-26
 Identities = 54/302 (17%), Positives = 106/302 (35%), Gaps = 54/302 (17%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAK 535
           N       +G G++GK+ +         +   +VA++ L  S   T R   +  L +L+ 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN------------- 581
           L  H ++V LLG C  GG           ++ E+   G+    +                
Sbjct: 83  LGNHMNIVNLLGACTIGG--------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 582 --TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
                  L+  + L+    VAK + FL +       +  +   NILL   RI K+ D+GL
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGL 191

Query: 640 SIVSEDINS-------VGGKQEDPNSWEMTKLED---DVFSFGFMLLESVAGPSVAARKG 689
           +   ++ ++           +          +     DV+S+G  L E  +         
Sbjct: 192 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG------- 244

Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN 749
                    +       +++       S   + + +  I   C  ++   RP+F+ I+  
Sbjct: 245 ---SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL 301

Query: 750 LQ 751
           ++
Sbjct: 302 IE 303

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 6e-26
 Identities = 57/279 (20%), Positives = 106/279 (37%), Gaps = 40/279 (14%)

Query: 490 IMGEGSYGKLYKGRLENGTS----VAIRCL-PSSKKYTVRNLKLRLDLLAKLRHPHLVCL 544
           ++G G +G +Y G L +        A++ L   +    V        ++    HP+++ L
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 93

Query: 545 LGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQ 604
           LG C+   G          +V  +M +G+ R  I   T        + +   + VAK ++
Sbjct: 94  LGICLRSEG-------SPLVVLPYMKHGDLRNFIRNETHN--PTVKDLIGFGLQVAKGMK 144

Query: 605 FLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDPNSWEMT 662
           FL       F +  +   N +L+E    K++D+GL+  +  ++ +SV  K       +  
Sbjct: 145 FLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWM 201

Query: 663 KLED----------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV 712
            LE           DV+SFG +L E +                 D        +RL+ P 
Sbjct: 202 ALESLQTQKFTTKSDVWSFGVLLWELMTR----GAPPYPDVNTFDITVYLLQGRRLLQPE 257

Query: 713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
                       +  +  KC   ++  RPSF +++  + 
Sbjct: 258 YCPDP-------LYEVMLKCWHPKAEMRPSFSELVSRIS 289

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  103 bits (259), Expect = 3e-25
 Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 49/289 (16%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR---------LDLL 533
           N++   I+G G    + +          A++ +  +   +    +++         +D+L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 534 AKLR-HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSER 592
            K+  HP+++ L                  FLV++ M  G    +++E      L+  E 
Sbjct: 64  RKVSGHPNIIQLKDTYETN--------TFFFLVFDLMKKGELFDYLTEKVT---LSEKET 112

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV---SEDINSV 649
             ++  + + +  LH        +  +K  NILL++    KL+D+G S      E +  V
Sbjct: 113 RKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 169

Query: 650 GGKQED--PNSWEMTKLED--------DVFSFGFMLLESVAG-PSVAARKGQFLQEELDS 698
            G      P   E +  ++        D++S G ++   +AG P    RK   +   +  
Sbjct: 170 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI-- 227

Query: 699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
                G  +   P     S       V  + ++ +  +   R + E+ L
Sbjct: 228 ---MSGNYQFGSPEWDDYSDT-----VKDLVSRFLVVQPQKRYTAEEAL 268

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 42/283 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPS---SKKYTVRNLKLRLDLLAK 535
            +  +   +G+GS+G + +G  +       SVA++CL     S+   + +    ++ +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
           L H +L+ L G  +            + +V E    G+    + ++              
Sbjct: 68  LDHRNLIRLYGVVLTP---------PMKMVTELAPLGSLLDRLRKH--QGHFLLGTLSRY 116

Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQE- 654
            + VA+ + +L +     F +  +   N+LL    + K+ D+GL       +     QE 
Sbjct: 117 AVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEH 173

Query: 655 --------DPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG 704
                    P S +        D + FG  L E               QE    LN  + 
Sbjct: 174 RKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYG----------QEPWIGLNGSQI 223

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
             ++           +    + ++  +C   +   RP+F  + 
Sbjct: 224 LHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 266

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (259), Expect = 5e-25
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 29/281 (10%)

Query: 476 EELKEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLL 533
           ++ ++  + +D   ++G G++ ++           VAI+C+               + +L
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 534 AKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            K++HP++V L      G          ++L+ + +S G     I E          +  
Sbjct: 62  HKIKHPNIVALDDIYESG--------GHLYLIMQLVSGGELFDRIVEKGF---YTERDAS 110

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED---INSVG 650
            ++  V  AV++LH   I              L+E     +SD+GLS + +    +++  
Sbjct: 111 RLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTAC 170

Query: 651 GKQE--DPNSWEMTKLED--DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
           G      P            D +S G +    + G         F  E    L  Q  + 
Sbjct: 171 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG------YPPFYDENDAKLFEQILKA 224

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
                        +S    I      +  +   R + E  L
Sbjct: 225 EYEFDSPYWDDISDSAKDFIR---HLMEKDPEKRFTCEQAL 262

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 9e-25
 Identities = 54/298 (18%), Positives = 112/298 (37%), Gaps = 55/298 (18%)

Query: 471 RSFTLEELKEATNNFDMSAIMGEGSYGKLYKGRLEN---GTSVAIRCLP--SSKKYTVRN 525
           +  TLE+ +           +G G++G + KG  +      +VA++ L   ++       
Sbjct: 6   KLLTLEDKE-----------LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDE 54

Query: 526 LKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
           L    +++ +L +P++V ++G C               LV E    G    ++ +N    
Sbjct: 55  LLAEANVMQQLDNPYIVRMIGICEA---------ESWMLVMEMAELGPLNKYLQQNRH-- 103

Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED 645
            +     + ++  V+  +++L       F +  +   N+LL     AK+SD+GLS     
Sbjct: 104 -VKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 159

Query: 646 INSVGGKQ------------EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ 693
             +    Q            E  N ++ +  + DV+SFG ++ E+ +          + Q
Sbjct: 160 DENYYKAQTHGKWPVKWYAPECINYYKFSS-KSDVWSFGVLMWEAFS----------YGQ 208

Query: 694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           +    +   E    L     M   +      +  + N C   +  +RP F  +   L+
Sbjct: 209 KPYRGMKGSEVTAMLEKGERMGCPAGCPRE-MYDLMNLCWTYDVENRPGFAAVELRLR 265

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 57/307 (18%), Positives = 111/307 (36%), Gaps = 59/307 (19%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSSKKYTVRNLKLR-LDLLAK 535
            N +   ++G G++GK+                VA++ L      + R   +  L ++ +
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 536 L-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI---------------- 578
           L  H ++V LLG C   G         ++L++E+   G+   ++                
Sbjct: 97  LGSHENIVNLLGACTLSG--------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYEN 148

Query: 579 ----SENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL 634
                E     VL + + L     VAK ++FL         +  +   N+L+   ++ K+
Sbjct: 149 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKI 205

Query: 635 SDYGLS--IVSEDINSVGGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVAGPSV 684
            D+GL+  I+S+    V G    P  W         +  ++ DV+S+G +L E  +    
Sbjct: 206 CDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSL--- 262

Query: 685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFE 744
                 +       +       +L+           +   +  I   C   +S  RPSF 
Sbjct: 263 --GVNPY-----PGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFP 315

Query: 745 DILWNLQ 751
           ++   L 
Sbjct: 316 NLTSFLG 322

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-24
 Identities = 44/279 (15%), Positives = 112/279 (40%), Gaps = 33/279 (11%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR 537
           KE    + ++  +G G +G +++     +  +   + +       V  +K  + +L   R
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVL-VKKEISILNIAR 59

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           H +++ L                ++ +++EF+S  +    I+ +     LN  E ++ + 
Sbjct: 60  HRNILHLHESFESM--------EELVMIFEFISGLDIFERINTS--AFELNEREIVSYVH 109

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR--IAKLSDYGLSIVSEDINSVGGKQED 655
            V +A+QFLH+       +  ++  NI+    R    K+ ++G +   +  ++       
Sbjct: 110 QVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTA 166

Query: 656 PNSWEMTKLED-------DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
           P  +     +        D++S G ++   ++G  +     +  Q+ ++++ + E     
Sbjct: 167 PEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG--INPFLAETNQQIIENIMNAEYT--- 221

Query: 709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
            D       S+E++  V    ++ +  E  SR +  + L
Sbjct: 222 FDEEAFKEISIEAMDFV----DRLLVKERKSRMTASEAL 256

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  102 bits (254), Expect = 5e-24
 Identities = 42/275 (15%), Positives = 102/275 (37%), Gaps = 32/275 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
           + +D+   +G G++G +++      G     + + +        +K  + ++ +L HP L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           + L     D          ++ L+ EF+S G     I+       ++ +E +  +    +
Sbjct: 89  INLHDAFEDK--------YEMVLILEFLSGGELFDRIAAE--DYKMSEAEVINYMRQACE 138

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHR--IAKLSDYGLSIVSEDINSVGGKQEDPN-- 657
            ++ +H        +  +K  NI+    +    K+ D+GL+        V          
Sbjct: 139 GLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFA 195

Query: 658 SWEMTKLE-----DDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV 712
           + E+   E      D+++ G +    ++G           +++L++L + +      D  
Sbjct: 196 APEIVDREPVGFYTDMWAIGVLGYVLLSG-----LSPFAGEDDLETLQNVKRCDWEFDED 250

Query: 713 VMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
             ++ S E+   +       +  E   R +  D L
Sbjct: 251 AFSSVSPEAKDFI----KNLLQKEPRKRLTVHDAL 281

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (253), Expect = 7e-24
 Identities = 45/213 (21%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAK 535
           N+F +  I+G G +G++Y  R  + G   A++CL   +      +    N ++ L L++ 
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
              P +VC+               +K+  + + M+ G+   H+S++      + ++    
Sbjct: 64  GDCPFIVCMSYAFHTP--------DKLSFILDLMNGGDLHYHLSQHGVF---SEADMRFY 112

Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV---SEDINSVGGK 652
              +   ++ +H           +K  NILL+EH   ++SD GL+      +   SVG  
Sbjct: 113 AAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH 169

Query: 653 QEDPNSWEMTKL----EDDVFSFGFMLLESVAG 681
                      +      D FS G ML + + G
Sbjct: 170 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 202

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 28/217 (12%)

Query: 479 KEATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSS---KKYTVRNLKLRLDLLA 534
           K+   +F    I+GEGS+  +   R L      AI+ L      K+  V  +    D+++
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLA 594
           +L HP  V L     D          K++    +  NG    +I +       + +    
Sbjct: 64  RLDHPFFVKLYFTFQDD--------EKLYFGLSYAKNGELLKYIRKIGS---FDETCTRF 112

Query: 595 VLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED------INS 648
               +  A+++LH   I    +  +K  NILLNE    +++D+G + V          NS
Sbjct: 113 YTAEIVSALEYLHGKGI---IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS 169

Query: 649 VGGKQE--DPNSWEMTKL--EDDVFSFGFMLLESVAG 681
             G  +   P            D+++ G ++ + VAG
Sbjct: 170 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 206

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (246), Expect = 2e-23
 Identities = 49/293 (16%), Positives = 109/293 (37%), Gaps = 46/293 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAK 535
               MS  +G+GS+G +Y+G        E  T VAI+ +  +     R   L    ++ +
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-------SENTPGKVLN 588
               H+V LLG    G            ++ E M+ G+ ++++       + N      +
Sbjct: 80  FNCHHVVRLLGVVSQG--------QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 131

Query: 589 WSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS 648
            S+ + +   +A  + +L+      F +  +   N ++ E    K+ D+G++    + + 
Sbjct: 132 LSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY 188

Query: 649 VGGKQEDPNSWEMTKLE----------DDVFSFGFMLLESVAGPSVAARKGQFLQEELDS 698
                +          E           DV+SFG +L E                     
Sbjct: 189 YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----------YQG 238

Query: 699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           L++++  + +++  ++         ++  +   C       RPSF +I+ +++
Sbjct: 239 LSNEQVLRFVMEGGLLDKPDNCP-DMLFELMRMCWQYNPKMRPSFLEIISSIK 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (248), Expect = 3e-23
 Identities = 46/290 (15%), Positives = 109/290 (37%), Gaps = 35/290 (12%)

Query: 484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV 542
           ++  + ++G GS+G +Y+ +L ++G  VAI+ +   K++  R L++    + KL H ++V
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQI----MRKLDHCNIV 76

Query: 543 CLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKA 602
            L       G + D     + LV +++    +R     +   + L        +  + ++
Sbjct: 77  RLRYFFYSSGEKKDE--VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 134

Query: 603 VQFLHTGVIPGFFNNRVKTNNILLNEH-RIAKLSDYGLSIVSEDINSVGGKQEDPNSWEM 661
           + ++H+    G  +  +K  N+LL+    + KL D+G +                     
Sbjct: 135 LAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP 191

Query: 662 TKLED--------DVFSFGFMLLESVAG-------------PSVAARKGQFLQEELDSLN 700
             +          DV+S G +L E + G               +    G   +E++  +N
Sbjct: 192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN 251

Query: 701 SQEGRQRLVDPVVMATSSLESLSI---VISIANKCICSESWSRPSFEDIL 747
                 +         + +         I++ ++ +     +R +  +  
Sbjct: 252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEAC 301

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 7e-23
 Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 28/269 (10%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHC 548
           ++G G  GK+ +          A++ L    K   R ++L        + PH+V ++   
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCPKAR-REVELHWRAS---QCPHIVRIVDVY 74

Query: 549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHT 608
            +           + +V E +  G   + I +    +     E   ++  + +A+Q+LH+
Sbjct: 75  ENLYAGRKC----LLIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHS 129

Query: 609 GVIPGFFNNRVKTNNILLNEHR---IAKLSDYGLSIVSEDINSVGGKQEDPN--SWEMTK 663
             I    +  VK  N+L    R   I KL+D+G +  +   NS+      P   + E+  
Sbjct: 130 INIA---HRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG 186

Query: 664 LED-----DVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSS 718
            E      D++S G ++   + G                    + G+    +P     S 
Sbjct: 187 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE 246

Query: 719 LESLSIVISIANKCICSESWSRPSFEDIL 747
                 V  +    + +E   R +  + +
Sbjct: 247 E-----VKMLIRNLLKTEPTQRMTITEFM 270

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (237), Expect = 3e-22
 Identities = 49/302 (16%), Positives = 116/302 (38%), Gaps = 55/302 (18%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL--------ENGTSVAIRCL-PSSKKYTVRNLKLRLDLL 533
           +   +   +GEG++G++                T VA++ L   + +  + +L   ++++
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 534 AKL-RHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-------------S 579
             + +H +++ LLG C             ++++ E+ S GN R ++              
Sbjct: 73  KMIGKHKNIINLLGACTQD--------GPLYVIVEYASKGNLREYLQARRPPGLEYSYNP 124

Query: 580 ENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL 639
            + P + L+  + ++    VA+ +++L +       +  +   N+L+ E  + K++D+GL
Sbjct: 125 SHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGL 181

Query: 640 SIVSEDINSVGGKQEDPNSWEMTKLED----------DVFSFGFMLLESVAGPSVAARKG 689
           +     I+            +    E           DV+SFG +L E            
Sbjct: 182 ARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTL-----GGS 236

Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN 749
            +       +  +E  + L +   M   S  +   +  +   C  +    RP+F+ ++ +
Sbjct: 237 PY-----PGVPVEELFKLLKEGHRMDKPSNCTNE-LYMMMRDCWHAVPSQRPTFKQLVED 290

Query: 750 LQ 751
           L 
Sbjct: 291 LD 292

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 5e-22
 Identities = 59/304 (19%), Positives = 109/304 (35%), Gaps = 51/304 (16%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR------LENGTSVAIRCLP--SSKKYTVRNLKLRLDLLA 534
           +   +   +G G++G++ +             +VA++ L   ++       +     L+ 
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 535 KLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHI-------------SEN 581
              H ++V LLG C   G         + ++ EF   GN  T++              E+
Sbjct: 73  IGHHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 125

Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS- 640
                L     +     VAK ++FL +       +  +   NILL+E  + K+ D+GL+ 
Sbjct: 126 LYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLAR 182

Query: 641 -IVSEDINSVGGKQEDPNSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQF 691
            I  +      G    P  W   +         + DV+SFG +L E  +  + +   G  
Sbjct: 183 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA-SPYPGVK 241

Query: 692 LQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
           + EE      +  R R  D              +      C   E   RP+F +++ +L 
Sbjct: 242 IDEEFCRRLKEGTRMRAPDYTTPE---------MYQTMLDCWHGEPSQRPTFSELVEHLG 292

Query: 752 YAAQ 755
              Q
Sbjct: 293 NLLQ 296

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 6e-22
 Identities = 54/287 (18%), Positives = 113/287 (39%), Gaps = 41/287 (14%)

Query: 485 FDMSAIMGEGSYGKLYKGRL-----ENGTSVAIRCL-PSSKKYTVRNLKLRLDLLAKLRH 538
           F    ++G G++G +YKG       +    VAI+ L  ++     + +     ++A + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           PH+  LLG C+            V L+ + M  G    ++ E+     +     L   + 
Sbjct: 71  PHVCRLLGICLTS---------TVQLITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQ 119

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS--IVSEDINSVGGKQEDP 656
           +AK + +L         +  +   N+L+   +  K++D+GL+  + +E+        + P
Sbjct: 120 IAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVP 176

Query: 657 NSWEMTKL--------EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL 708
             W   +         + DV+S+G  + E +           F  +  D + + E    L
Sbjct: 177 IKWMALESILHRIYTHQSDVWSYGVTVWELMT----------FGSKPYDGIPASEISSIL 226

Query: 709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ 755
                +    + ++  V  I  KC   ++ SRP F +++      A+
Sbjct: 227 EKGERLPQPPICTID-VYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 2e-21
 Identities = 55/306 (17%), Positives = 108/306 (35%), Gaps = 41/306 (13%)

Query: 473 FTLEELKEAT----NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL--PSSKKYTVRN 525
           F  +E+ +        +     +G G+YG +        G  VAI+ L  P   +   + 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 526 LKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGK 585
               L LL  +RH +++ LL         DD      +LV  FM  G     + ++    
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDD--FTDFYLVMPFM--GTDLGKLMKHEK-- 117

Query: 586 VLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSE 644
            L       ++  + K ++++H     G  +  +K  N+ +NE    K+ D+GL+     
Sbjct: 118 -LGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQADS 173

Query: 645 DINSVGGKQ-----EDPNSWEMTKLEDDVFSFGFMLLESVAG-------------PSVAA 686
           ++      +     E   +W       D++S G ++ E + G               +  
Sbjct: 174 EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMK 233

Query: 687 RKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVIS-----IANKCICSESWSRP 741
             G    E +  L S E +  +     +      S+    S     +  K +  ++  R 
Sbjct: 234 VTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRV 293

Query: 742 SFEDIL 747
           +  + L
Sbjct: 294 TAGEAL 299

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 2e-21
 Identities = 53/288 (18%), Positives = 102/288 (35%), Gaps = 44/288 (15%)

Query: 490 IMGEGSYGKLYKGR-LENGTSVAIRCLP-----SSKKYTVRNLKLRLDLLAKLRHPHLVC 543
            +GEG +  +YK R       VAI+ +       +K    R     + LL +L HP+++ 
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIG 64

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
           LL              + + LV++FM                VL  S   A ++   + +
Sbjct: 65  LLDAFGHK--------SNISLVFDFMETDLEVIIKDN---SLVLTPSHIKAYMLMTLQGL 113

Query: 604 QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSED-----INSVGGKQ----E 654
           ++LH   I    +  +K NN+LL+E+ + KL+D+GL+           + V  +     E
Sbjct: 114 EYLHQHWI---LHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPE 170

Query: 655 DPNSWEMTKLEDDVFSFGFMLLESVAGP-------------SVAARKGQFLQEELDSLNS 701
                 M  +  D+++ G +L E +                 +    G   +E+   + S
Sbjct: 171 LLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCS 230

Query: 702 QEGRQRLVD-PVVMATSSLESLSI-VISIANKCICSESWSRPSFEDIL 747
                     P +       +    ++ +          +R +    L
Sbjct: 231 LPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQAL 278

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 92.1 bits (228), Expect = 3e-21
 Identities = 49/286 (17%), Positives = 101/286 (35%), Gaps = 35/286 (12%)

Query: 482 TNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP---SSKKYTVRNLKLRLDLLAKLR 537
           ++ +++  I+G G   +++  R L     VA++ L    +         +      A L 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HP +V +          +  A    ++V E++     R  +    P   +     + V+ 
Sbjct: 66  HPAIVAVYDTGEA----ETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIA 118

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ---- 653
              +A+ F H     G  +  VK  NI+++     K+ D+G++    D  +   +     
Sbjct: 119 DACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI 175

Query: 654 -----EDPNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ 706
                  P       +    DV+S G +L E + G      +  F  +   S+  Q  R+
Sbjct: 176 GTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG------EPPFTGDSPVSVAYQHVRE 229

Query: 707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRP-SFEDILWNLQ 751
             + P          L  V+    K +     +R  +  ++  +L 
Sbjct: 230 DPIPPSARHEGLSADLDAVVL---KALAKNPENRYQTAAEMRADLV 272

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-21
 Identities = 45/300 (15%), Positives = 109/300 (36%), Gaps = 41/300 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHP 539
           + ++  A +G+G++G+++K R  + G  VA++ +   + K+         + +L  L+H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           ++V L+  C       +     ++LV++F  +       +          SE   V+  +
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK---FTLSEIKRVMQML 126

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN-- 657
              + ++H        +  +K  N+L+    + KL+D+GL+       +    +      
Sbjct: 127 LNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV 183

Query: 658 -----SWEMTKLED------DVFSFGFMLLESVAGPS-------------VAARKGQFLQ 693
                  E+   E       D++  G ++ E                   ++   G    
Sbjct: 184 TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP 243

Query: 694 EELDSLNSQEGRQRLVDPVVMATSSLESLSIV------ISIANKCICSESWSRPSFEDIL 747
           E   ++++ E  ++L           + L         + + +K +  +   R   +D L
Sbjct: 244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDAL 303

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 6e-21
 Identities = 50/300 (16%), Positives = 104/300 (34%), Gaps = 43/300 (14%)

Query: 480 EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR-LDLLAKLR 537
           +    +   + +GEG+YG +       N   VAI+ +   +  T     LR + +L + R
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 64

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           H +++ +                 V+LV   M   +    +        L+       L 
Sbjct: 65  HENIIGINDIIRAPTIEQM---KDVYLVTHLM-GADLYKLLKTQH----LSNDHICYFLY 116

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ---- 653
            + + ++++H+       +  +K +N+LLN     K+ D+GL+ V++  +   G      
Sbjct: 117 QILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173

Query: 654 --------EDPNSWEMTKLEDDVFSFGFMLLESVAG-------------PSVAARKGQFL 692
                   E   + +      D++S G +L E ++                +    G   
Sbjct: 174 ATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 233

Query: 693 QEELDSLNSQEGRQRLVDPVVMATSSLESLSIVIS-----IANKCICSESWSRPSFEDIL 747
           QE+L+ + + + R  L+            L          + +K +      R   E  L
Sbjct: 234 QEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 293

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 1e-20
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 27/212 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLD----LLAKLR 537
            +F +  ++G+GS+GK++     +     AI+ L         +++  +     L     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 538 HPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLI 597
           HP L  +                 +F V E+++ G+   HI         + S       
Sbjct: 62  HPFLTHMFCTFQTKE--------NLFFVMEYLNGGDLMYHIQSCHK---FDLSRATFYAA 110

Query: 598 GVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPN 657
            +   +QFLH+    G     +K +NILL++    K++D+G+   +   ++         
Sbjct: 111 EIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTP 167

Query: 658 SW--------EMTKLEDDVFSFGFMLLESVAG 681
            +        +      D +SFG +L E + G
Sbjct: 168 DYIAPEILLGQKYNHSVDWWSFGVLLYEMLIG 199

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 4e-19
 Identities = 53/285 (18%), Positives = 101/285 (35%), Gaps = 45/285 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR------LDLLAK 535
           + +D    +G G +  + K R    G   A + +   +  + R    R      + +L +
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 536 LRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAV 595
           ++HP+++ L     +           V L+ E ++ G     ++E      L   E    
Sbjct: 70  IQHPNVITLHEVYENK--------TDVILILELVAGGELFDFLAEKES---LTEEEATEF 118

Query: 596 LIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEH----RIAKLSDYGLSIVSEDINSVGG 651
           L  +   V +LH+  I  F    +K  NI+L +        K+ D+GL+   +  N    
Sbjct: 119 LKQILNGVYYLHSLQIAHFD---LKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKN 175

Query: 652 KQEDPN--SWEMTKLED-----DVFSFGFMLLESVAG--PSVAARKGQFLQEELDSLNSQ 702
               P   + E+   E      D++S G +    ++G  P +   K + L       N  
Sbjct: 176 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLA------NVS 229

Query: 703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
                  D     TS+L           + +  +   R + +D L
Sbjct: 230 AVNYEFEDEYFSNTSAL-----AKDFIRRLLVKDPKKRMTIQDSL 269

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 6e-19
 Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 47/307 (15%)

Query: 470 CRSFTLEELKEATNNFDMSAIMGEGSYGKLYKGR--LENGTSVAIRCLPSSK------KY 521
           CR+            ++  A +GEG+YGK++K R     G  VA++ +            
Sbjct: 3   CRA---------DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLS 53

Query: 522 TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISEN 581
           T+R + + L  L    HP++V L   C       +    K+ LV+E +            
Sbjct: 54  TIREVAV-LRHLETFEHPNVVRLFDVCTVSRTDRE---TKLTLVFEHVDQDLTTYLDKVP 109

Query: 582 TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI 641
            PG  +       ++  + + + FLH+       +  +K  NIL+      KL+D+GL+ 
Sbjct: 110 EPG--VPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLAR 164

Query: 642 VSEDINSVGGKQEDPNSWEMTKLED-------DVFSFGFMLLESVAG------------- 681
           +     ++              L         D++S G +  E                 
Sbjct: 165 IYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQL 224

Query: 682 PSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLS-IVISIANKCICSESWSR 740
             +    G   +E+     +   +             +  +  +   +  KC+      R
Sbjct: 225 GKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKR 284

Query: 741 PSFEDIL 747
            S    L
Sbjct: 285 ISAYSAL 291

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.9 bits (212), Expect = 7e-19
 Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 23/208 (11%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP---SSKKYTVRNLKLRLDLLAKLRH 538
            +F +   +G GS+G+++  R   NG   A++ L      +   V +      +L+ + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P ++ + G   D          ++F++ +++  G   + + ++       +   +A    
Sbjct: 64  PFIIRMWGTFQDA--------QQIFMIMDYIEGGELFSLLRKSQR-----FPNPVAKFY- 109

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNS 658
            A+    L            +K  NILL+++   K++D+G +    D+        D  +
Sbjct: 110 AAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIA 169

Query: 659 WEMTK-----LEDDVFSFGFMLLESVAG 681
            E+          D +SFG ++ E +AG
Sbjct: 170 PEVVSTKPYNKSIDWWSFGILIYEMLAG 197

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.6 bits (208), Expect = 1e-18
 Identities = 44/292 (15%), Positives = 95/292 (32%), Gaps = 41/292 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPH 540
             +     +GEG+YG +YK +   G + A++ +   K  +         + +L +L+H +
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V L                ++ LV+E +     +           L      + L+ + 
Sbjct: 62  IVKLYDVIHTK--------KRLVLVFEHLDQDLKKLLDVCEGG---LESVTAKSFLLQLL 110

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-IVSEDINSVGGKQEDPNSW 659
             + + H        +  +K  N+L+N     K++D+GL+      +     +       
Sbjct: 111 NGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYR 167

Query: 660 EMTKLED--------DVFSFGFMLLESVAG-----------PSVAARKGQFLQEELDSLN 700
               L          D++S G +  E V G             +   +        +  N
Sbjct: 168 APDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN 227

Query: 701 SQEGRQRLVDPVVMATSSLESLSIVIS-----IANKCICSESWSRPSFEDIL 747
             E  +   +  V      ES    +      + +K +  +   R + +  L
Sbjct: 228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQAL 279

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 56/298 (18%), Positives = 100/298 (33%), Gaps = 53/298 (17%)

Query: 484 NFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHPH 540
           NF     +GEG+YG +YK R    G  VA++ +   +  +         + LL +L HP+
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           +V LL              NK++LV+EF+     +   +    G  +      + L  + 
Sbjct: 63  IVKLLDVIHTE--------NKLYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLL 112

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ------- 653
           + + F H+  +    +  +K  N+L+N     KL+D+GL+            +       
Sbjct: 113 QGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 169

Query: 654 --EDPNSWEMTKLEDDVFSFGFMLLESVAG----------------------PSVAARKG 689
             E     +      D++S G +  E V                        P      G
Sbjct: 170 APEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPG 229

Query: 690 QFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
                +      +  RQ     V        SL       ++ +  +   R S +  L
Sbjct: 230 VTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSL------LSQMLHYDPNKRISAKAAL 281

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.0 bits (204), Expect = 5e-18
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 39/288 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
           N + +   +G GS+G +Y G  +  G  VAI+      K+    L +   +   ++    
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVG 64

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           +  +  C   G       +   +V E +           +      +    L +   +  
Sbjct: 65  IPTIRWCGAEG-------DYNVMVMELLGPSLEDLFNFCSRK---FSLKTVLLLADQMIS 114

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL---SDYGLSIVSEDINSVGGKQEDPNS 658
            ++++H+     F +  VK +N L+   +   L    D+GL+    D  +        N 
Sbjct: 115 RIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENK 171

Query: 659 WEMTKLE---------------DDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQE 703
                                 DD+ S G++L+    G S+  +  +   +        E
Sbjct: 172 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLG-SLPWQGLKAATKRQKYERISE 230

Query: 704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQ 751
            +      V+      E      +  N C       +P +  +    +
Sbjct: 231 KKMSTPIEVLCKGYPSE----FATYLNFCRSLRFDDKPDYSYLRQLFR 274

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 83.7 bits (206), Expect = 5e-18
 Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 29/210 (13%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPH 540
           +++ +   +G G Y ++++   + N   V ++ L   KK  ++     + +L  LR  P+
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR---EIKILENLRGGPN 91

Query: 541 LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVA 600
           ++ L     D   R         LV+E ++N +F+         + L   +    +  + 
Sbjct: 92  IITLADIVKDPVSRTPA------LVFEHVNNTDFKQLY------QTLTDYDIRFYMYEIL 139

Query: 601 KAVQFLHTGVIPGFFNNRVKTNNILL-NEHRIAKLSDYGLSIV----SEDINSVGGKQ-- 653
           KA+ + H+    G  +  VK +N+++ +EHR  +L D+GL+       E    V  +   
Sbjct: 140 KALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFK 196

Query: 654 --EDPNSWEMTKLEDDVFSFGFMLLESVAG 681
             E    ++M     D++S G ML   +  
Sbjct: 197 GPELLVDYQMYDYSLDMWSLGCMLASMIFR 226

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 6e-18
 Identities = 52/307 (16%), Positives = 114/307 (37%), Gaps = 41/307 (13%)

Query: 472 SFTLEELK----EATNNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNL 526
           +F  +EL     E    +   + +G G+YG +      + G  VA++ L    +  +   
Sbjct: 3   TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAK 62

Query: 527 KLR--LDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPG 584
           +    L LL  ++H +++ LL         +++  N V+LV   M               
Sbjct: 63  RTYRELRLLKHMKHENVIGLLDVFTPARSLEEF--NDVYLVTHLMGADLNNIV-----KC 115

Query: 585 KVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSE 644
           + L       ++  + + ++++H+       +  +K +N+ +NE    K+ D+GL+  ++
Sbjct: 116 QKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLARHTD 172

Query: 645 DINS------VGGKQEDPNSWEMTKLEDDVFSFGFMLLESVAG-------------PSVA 685
           D  +           E   +W       D++S G ++ E + G               + 
Sbjct: 173 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLIL 232

Query: 686 ARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVIS-----IANKCICSESWSR 740
              G    E L  ++S+  R  +     M   +  ++ I  +     +  K +  +S  R
Sbjct: 233 RLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKR 292

Query: 741 PSFEDIL 747
            +    L
Sbjct: 293 ITAAQAL 299

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 82.2 bits (202), Expect = 9e-18
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 43/304 (14%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHL 541
            ++ +   +GEGS+G +++G  L N   VAI+  P  ++     L+        L     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEP--RRSDAPQLRDEYRTYKLLAGCTG 62

Query: 542 VCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAK 601
           +  + +    G  +        LV + +              G+  +          +  
Sbjct: 63  IPNVYYFGQEGLHN-------VLVIDLLGPSLEDLLDLC---GRKFSVKTVAMAAKQMLA 112

Query: 602 AVQFLHTGVIPGFFNNRVKTNNILLNE-----HRIAKLSDYGLSIVSEDINSVGGKQED- 655
            VQ +H           +K +N L+         +  + D+G+     D  +        
Sbjct: 113 RVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE 169

Query: 656 ------------PNSWEMTKL--EDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNS 701
                        N+    +    DD+ + G + +  + G         +   +  +   
Sbjct: 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG------SLPWQGLKAATNKQ 223

Query: 702 QEGRQRLVDPVVMATSSLESLSI-VISIANKCICSESWSRPSFEDILWNLQYAAQVQETA 760
           +  R                         +        + P ++ +        +   T 
Sbjct: 224 KYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT 283

Query: 761 DNEQ 764
           ++E 
Sbjct: 284 EDEN 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 1e-17
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 7/256 (2%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF 177
               +L L +  I          L +L  L L +N +    P   + +VKL+ L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLG 237
                     +L  L        K+     + + ++  +        +          + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 238 SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
            L+ + ++D  + +    LP  L    L  N  +         LN L +L +SFN++  +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 298 PPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG------GLPSCLS 351
              ++ + P++ +L+L +NK         +    +    + NN ++         P   +
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 352 NESDKRVVKFRGNCLS 367
            ++    V    N + 
Sbjct: 270 KKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 26/256 (10%)

Query: 133 SLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL 192
            +P  +        LDL +N +          +  L TLIL +N  +   P  F  L  L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 193 TFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSN 252
             L +  N+L        + +  L   +     +  S+ +  +   +  L          
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL---------- 131

Query: 253 LPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLN 312
                        +    SG     +  + +L  + ++   +  +P       P++++L+
Sbjct: 132 -----------GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELH 177

Query: 313 LASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSSNVQN 372
           L  NK +     +L     L    +S N ++      L+N    R +    N L      
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

Query: 373 QHPESYCFEVRTERNQ 388
                Y   V    N 
Sbjct: 238 LADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 24/115 (20%), Positives = 41/115 (35%)

Query: 238 SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM 297
            L V+  SD  L+     LP    +  L NN  +      +  L  L  L +  N +  +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 298 PPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN 352
            P A   L  +  L L+ N+      K      +L   +    K+   + + L+ 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 11/153 (7%)

Query: 104 NFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKIS 163
             S          +  L  + +    I  ++P  +    SL  L L  N +       + 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLK 192

Query: 164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSK 223
            +  L  L L  N  +        + P L  L + NNKL    P  +     +  + L  
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHN 251

Query: 224 NAISG-------SLPDLSSLGSLNVLNLSDNKL 249
           N IS             +   S + ++L  N +
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 9e-06
 Identities = 37/247 (14%), Positives = 83/247 (33%), Gaps = 11/247 (4%)

Query: 7   NLLLLLCLSWSLFPLGTHQLQSSQTQVLLQLR--KHLEYPKQLEIWINHGADFCYISSST 64
           NL  L+ ++  +  +             L L   +  E P+++   +          +  
Sbjct: 56  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

Query: 65  QVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLAR--LTSLRV 122
           + ++    N +  +++  +   + G  +G       LS     D+ +TT+ +    SL  
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 175

Query: 123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI 182
           L L    I       +  L +L  L LS N +       ++    L+  +  +N     +
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE-LHLNNNKLVKV 234

Query: 183 PNWFDSLPSLTFLSMRNNKLAG------PFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
           P        +  + + NN ++         P    + ++ S + L  N +       S+ 
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 237 GSLNVLN 243
             + V  
Sbjct: 295 RCVYVRA 301

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 3e-17
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 26/211 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRH 538
           N+FD   ++G+G++GK+   R    G   A++ L       K  V +      +L   RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P L  L               +++  V E+ + G    H+S                   
Sbjct: 65  PFLTALKYAFQTH--------DRLCFVMEYANGGELFFHLSRERV---FTEERARFYGAE 113

Query: 599 VAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS-----VGGKQ 653
           +  A+++LH+          +K  N++L++    K++D+GL        +      G  +
Sbjct: 114 IVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPE 170

Query: 654 EDPNSWEMTKLED---DVFSFGFMLLESVAG 681
                           D +  G ++ E + G
Sbjct: 171 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 201

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 9e-17
 Identities = 51/283 (18%), Positives = 96/283 (33%), Gaps = 51/283 (18%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLR------LDLLAK 535
           + + +  ++G G +G +Y G  + +   VAI+ +   +      L         + LL K
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 536 LRHPH--LVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNG-NFRTHISENTPGKVLNWSER 592
           +      ++ LL              +   L+ E      +    I+E      L     
Sbjct: 64  VSSGFSGVIRLLDWFERP--------DSFVLILERPEPVQDLFDFITERGA---LQEELA 112

Query: 593 LAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLSIVSED--INSV 649
            +    V +AV+  H     G  +  +K  NIL++ +R   KL D+G   + +D      
Sbjct: 113 RSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDF 169

Query: 650 GGKQ-----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG 704
            G +     E             V+S G +L + V G        + ++ ++        
Sbjct: 170 DGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFF------ 223

Query: 705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDIL 747
           RQR+                   +   C+      RP+FE+I 
Sbjct: 224 RQRVSSE-------------CQHLIRWCLALRPSDRPTFEEIQ 253

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 3e-16
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 14/203 (6%)

Query: 139 HRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR 198
            +L +LE L  ++N +    P  I  +  L  L L+ N           SL +LT L + 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL--KDIGTLASLTNLTDLDLA 249

Query: 199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPR 258
           NN+++   P  +  ++ L++L L  N IS   P        N+    +   D +     +
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 259 GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKF 318
            L    L  N+ S   P     L +LQ+L  + N +      ++ +L NI+ L+   N+ 
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363

Query: 319 SGSLP-KNLNCGGKLVFFDISNN 340
           S   P  NL    ++    +++ 
Sbjct: 364 SDLTPLANLT---RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 169 QTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           ++LI  +N  ++  P       +L  LS+  N+L      ++  ++ L+DLDL+ N IS 
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 255

Query: 229 SLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD 288
            L  LS L  L  L L  N++  N+  L     +  L  N    E       L  L  L 
Sbjct: 256 -LAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP 347
           + FN +  + P  + SL  +  L  A+NK S     +L     + +    +N+++   P
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNF 177
           T+L  LSL    +       +  L +L  LDL++N +    P  +S + KL  L L  N 
Sbjct: 219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 178 FNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLG 237
            +N  P     L +LT L +  N+      S I  +  L+ L L  N IS   P +SSL 
Sbjct: 275 ISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 238 SLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNA 293
            L  L  ++NK+   S+L  L   +      +N  S   P     L ++ QL ++  A
Sbjct: 330 KLQRLFFANNKVSDVSSLANLTN-INWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 8e-11
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 27/176 (15%)

Query: 70  CQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLG 129
                + EL + G++  ++G      +       N  I +    L+ LT L  L L +  
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 274

Query: 130 IWGSLP--------------------DKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQ 169
           I    P                      I  L +L YL L  N +    P  +S++ KLQ
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 170 TLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNA 225
            L   +N    +  +   +L ++ +LS  +N+++   P  +  ++ ++ L L+  A
Sbjct: 333 RLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 43/237 (18%), Positives = 83/237 (35%), Gaps = 15/237 (6%)

Query: 111 VTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQT 170
             +   L  +  L    LGI     D +  L +L  ++ S+N L    P  +  + KL  
Sbjct: 37  TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL 230
           +++++N   +  P    +        +            ++ ++ L+ L+LS N IS   
Sbjct: 93  ILMNNNQIADITPLANLT----NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148

Query: 231 PDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMS 290
                     +   +       L  L     +   SN            +L  L+ L  +
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIAT 205

Query: 291 FNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLP 347
            N +  + P  I    N+ +L+L  N+        L     L   D++NN+++   P
Sbjct: 206 NNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 74/326 (22%), Positives = 132/326 (40%), Gaps = 24/326 (7%)

Query: 29  SQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQDNFITELKIIGDKPSNV 88
              Q LLQ++K L  P  L  W     D C   + T + + C            D  +  
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSW-LPTTDCC---NRTWLGVLC------------DTDTQT 49

Query: 89  GNFDGFASANASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLD 148
              +    +  +L + + I S +  L  L  L +  + +L     +P  I +L  L YL 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--IPPAIAKLTQLHYLY 107

Query: 149 LSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPS 208
           ++   + G++P  +S +  L TL    N  + T+P    SLP+L  ++   N+++G  P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 209 SIQRISTLS-DLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSN 267
           S    S L   + +S+N ++G +P   +  +L  ++LS N L+ +   L          +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 268 NSFSGEIPKQYGQLNQLQQL--DMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKN 325
            + +                  D+  N + G  P  +  L  +  LN++ N   G +P+ 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 326 LNCGGKLVFFDISNNKLTGG--LPSC 349
            N   +      +NNK   G  LP+C
Sbjct: 288 GNL-QRFDVSAYANNKCLCGSPLPAC 312

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 4e-16
 Identities = 51/296 (17%), Positives = 104/296 (35%), Gaps = 47/296 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLP--SSKKYTVRNLKLRLDLLAKLRHP 539
             ++    +GEG+YG ++K +  E    VA++ +      +    +    + LL +L+H 
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           ++V L                K+ LV+EF      +   S N     L+     + L  +
Sbjct: 62  NIVRLHDVLHSD--------KKLTLVFEFCDQDLKKYFDSCN---GDLDPEIVKSFLFQL 110

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDPNSW 659
            K + F H        +  +K  N+L+N +   KL+++GL+            +     +
Sbjct: 111 LKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWY 167

Query: 660 EMTKLED---------DVFSFGFMLLESVAGPS--------------VAARKGQFLQEEL 696
               +           D++S G +  E                    +    G   +E+ 
Sbjct: 168 RPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQW 227

Query: 697 DSLNSQEGRQRLVDPVVMATSSLESLSIVIS-----IANKCICSESWSRPSFEDIL 747
            S+      +    P+  AT+SL ++   ++     +    +      R S E+ L
Sbjct: 228 PSMTKLPDYKPY--PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCL--PSSKKYTVRNLKLRLDLLAKLRHP 539
             +     +G G+ G +          +VAI+ L  P   +   +     L L+  + H 
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 540 HLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGV 599
           +++ LL         +++    V+LV E M     +    E              +L  +
Sbjct: 77  NIISLLNVFTPQKTLEEF--QDVYLVMELMDANLCQVIQMELD------HERMSYLLYQM 128

Query: 600 AKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS-------IVSEDINSVGGK 652
              ++ LH+    G  +  +K +NI++      K+ D+GL+       +++  + +   +
Sbjct: 129 LCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYR 185

Query: 653 QEDPNSWEMTKLEDDVFSFGFMLLESVAG 681
             +       K   D++S G ++ E V  
Sbjct: 186 APEVILGMGYKENVDIWSVGCIMGEMVRH 214

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 37/210 (17%), Positives = 86/210 (40%), Gaps = 27/210 (12%)

Query: 483 NNFDMSAIMGEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRL---DLLAKLRH 538
           + FD    +G GS+G++   +  E+G   A++ L   K   ++ ++  L    +L  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 539 PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIG 598
           P LV L     D         + +++V E+++ G   +H+         +          
Sbjct: 101 PFLVKLEFSFKD--------NSNLYMVMEYVAGGEMFSHLRRIGR---FSEPHARFYAAQ 149

Query: 599 VAKAVQFLHT-GVIPGFFNNR-VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQEDP 656
           +    ++LH+  +I      R +K  N+L+++    +++D+G +   +          + 
Sbjct: 150 IVLTFEYLHSLDLI-----YRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEA 204

Query: 657 NSWEMTKLED-----DVFSFGFMLLESVAG 681
            + E+   +      D ++ G ++ E  AG
Sbjct: 205 LAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 9e-14
 Identities = 46/219 (21%), Positives = 82/219 (37%), Gaps = 34/219 (15%)

Query: 483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLP----SSKKYTVRNLKLRLDLLA 534
            NF++  ++G G+YGK++  R     + G   A++ L       K  T  + +    +L 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 535 KLRH-PHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERL 593
            +R  P LV L                K+ L+ ++++ G   TH+S+          E  
Sbjct: 84  HIRQSPFLVTLHYAFQTE--------TKLHLILDYINGGELFTHLSQRER---FTEHEVQ 132

Query: 594 AVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGGKQ 653
             +  +  A++ LH     G     +K  NILL+ +    L+D+GLS       +     
Sbjct: 133 IYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYD 189

Query: 654 EDPNSWEMTKLED-----------DVFSFGFMLLESVAG 681
                  M                D +S G ++ E + G
Sbjct: 190 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTG 228

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 6/186 (3%)

Query: 114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLIL 173
              L  L  L L   G+    P     L +L+YL L  N L          +  L  L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 174 DDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISG-SLPD 232
             N  ++     F  L SL  L +  N++A   P + + +  L  L L  N +S      
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 233 LSSLGSLNVLNLSDNKL--DSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMS 290
           L+ L +L  L L+DN    D     L   L     S++     +P+   +L       ++
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLA 277

Query: 291 FNALRG 296
            N L+G
Sbjct: 278 ANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 34/173 (19%), Positives = 58/173 (33%)

Query: 100 SLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVP 159
            L      +        L +L+ L L    +     D    L +L +L L  N +     
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 160 PKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDL 219
                +  L  L+L  N   +  P+ F  L  L  L +  N L+     ++  +  L  L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 220 DLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG 272
            L+ N              L     S +++  +LP+   G  +  L+ N   G
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 61/298 (20%), Positives = 96/298 (32%), Gaps = 32/298 (10%)

Query: 58  CYISSSTQVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLARL 117
           C   +  +V  +C    +    +    P+              L  N        +    
Sbjct: 6   CVCYNEPKVTTSCPQQGLQA--VPVGIPAASQRIF--------LHGNRISHVPAASFRAC 55

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPP-KISTMVKLQTLILDDN 176
            +L +L L S  +          L  LE LDLS N    SV P     + +L TL LD  
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
                 P  F  L +L +L +++N L      + + +  L+ L L  N IS         
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--- 172

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRG 296
                           L  L        L  N  +   P  +  L +L  L +  N L  
Sbjct: 173 -------------FRGLHSL----DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 297 MPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNES 354
           +P  A+  L  +  L L  N +     +       L  F  S++++   LP  L+   
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 20/165 (12%)

Query: 490 IMGEGSYGKLYKGRLENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPHLVC 543
           +MGEG    ++    E      ++            K       L   +LA     +   
Sbjct: 7   LMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFR 66

Query: 544 LLGHCIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAV 603
            L           YA     ++ E +                         VL  + + V
Sbjct: 67  ALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRV----------RVENPDEVLDMILEEV 116

Query: 604 QFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINS 648
              +   I    +  +   N+L++E  I  + D+  S+   +   
Sbjct: 117 AKFYHRGI---VHGDLSQYNVLVSEEGI-WIIDFPQSVEVGEEGW 157

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 21/226 (9%)

Query: 492 GEGSYGKLYKGR-LENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCID 550
           G G +  ++  + + N T VA++ +   K YT    +  + LL ++             +
Sbjct: 22  GWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT-EAAEDEIKLLQRVNDADNTKEDSMGAN 80

Query: 551 GGGR-----DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQF 605
              +     +    N V +V  F   G     + +    + +       +   +   + +
Sbjct: 81  HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY 140

Query: 606 LHTGVIPGFFNNRVKTNNILLNE----HRIAKLSDYGLSIVSEDINSVGGKQEDPNSWEM 661
           +H     G  +  +K  N+L+        + ++    L              +       
Sbjct: 141 MHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSP 198

Query: 662 TKLED-------DVFSFGFMLLESVAG-PSVAARKGQFLQEELDSL 699
             L         D++S   ++ E + G       +G    ++ D +
Sbjct: 199 EVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHI 244

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY 278
           L L+   ++  L  L  L  +  L+LS N+L +  P L     +  L  +  + E     
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFS-LPNISDLNLASNKFSG 320
             L +LQ+L +  N L+           P +  LNL  N    
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 146 YLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGP 205
            L L+   L  +V   +  ++ +  L L     +N +     +L +L  L +        
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASDNAL 55

Query: 206 F-PSSIQRISTLSDLDLSKNAISG--SLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLV 261
                +  +  L +L L  N +    ++  L S   L +LNL  N L      +   L 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLA 113

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLP 254
           L + +  L       ++++  ++ LDLS N +    P L++L  L VL  SDN L++   
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 255 KLPRGLVMAF-LSNNSF-SGEIPKQYGQLNQLQQLDMSFNALRGMP---PPAIFSLPNIS 309
                 +    L NN        +      +L  L++  N+L             LP++S
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 310 DL 311
            +
Sbjct: 121 SI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNN 180
           RVL L    +  ++   + +L  + +LDLS N L   +PP ++ +  L+ L   DN   N
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 181 TIPNWFDSLPSLTFLSMRNNKLAG-PFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSL 239
                         L + NN+L        +     L  L+L  N++         L  +
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 173 LDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD 232
              N  +N I +  D  PSL  L++ NNKL    P+   R   L  L  S N ++  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPE 321

Query: 233 LSSLGSLNVLNLSDNKLDSNLPKLPRGL 260
           L    +L  L++  N L    P +P  +
Sbjct: 322 L--PQNLKQLHVEYNPL-REFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL 256
              N  +    S      +L +L++S N +   LP  +    L  L  S N L + +P+L
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP--ALPPRLERLIASFNHL-AEVPEL 322

Query: 257 PRGLVMAFLSNNSFSGEIPKQYGQLNQLQ 285
           P+ L    +  N    E P     +  L+
Sbjct: 323 PQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 262 MAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGS 321
                 N+ S EI         L++L++S N L  +P       P +  L  + N  +  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA-E 318

Query: 322 LPKNLNCGGKLVFFDISNNKLTG--GLPSCLSN 352
           +P+       L    +  N L     +P  + +
Sbjct: 319 VPELP---QNLKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 149 LSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPS 208
              N     +         L+ L + +N     +P      P L  L    N LA   P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAE-VPE 321

Query: 209 SIQRISTLSDLDLSKNAISGSLPDL-SSLGSLNVLN 243
             Q    L  L +  N +    PD+  S+  L + +
Sbjct: 322 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 4e-05
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 138 IHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM 197
                SLE L++S+N L   +P       +L+ LI   N     +P   +   +L  L +
Sbjct: 280 CDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHL-AEVP---ELPQNLKQLHV 331

Query: 198 RNNKLAGPFPSSIQRISTL 216
             N L   FP   + +  L
Sbjct: 332 EYNPLRE-FPDIPESVEDL 349

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 5/204 (2%)

Query: 116 RLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDD 175
           ++ S   ++     +  +LP  + +      L LS N L+      +    +L  L LD 
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 176 -NFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLS 234
                  +      L +L     +   L     +           +   +   G+L  L 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 235 SLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNAL 294
            L  L +       L   L      L    L+NN+ +         L  L  L +  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 295 RGMPPPAIFSLPNISDLNLASNKF 318
             + P   F    +    L  N +
Sbjct: 185 YTI-PKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 5/207 (2%)

Query: 137 KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS 196
           ++ ++ S   ++     L  ++PP +        L L +N               LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSD-NKLDSNLPK 255
           +   +L          +    DL  ++      L       ++  ++ +    L     +
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 256 LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS 315
               L   +L  N      P       +L++L ++ N L  +P   +  L N+  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 316 NKFSGSLPKNLNCGGKLVFFDISNNKL 342
           N    ++PK       L F  +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 46/215 (21%), Positives = 65/215 (30%), Gaps = 32/215 (14%)

Query: 58  CYISSST-QVNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFVTTLAR 116
           C +S     + + C    +T   +  D P +             LSEN      + TL  
Sbjct: 4   CEVSKVASHLEVNCDKRNLTA--LPPDLPKDTTILH--------LSENLLYTFSLATLMP 53

Query: 117 LTSLRVLSLVSL---------------------GIWGSLPDKIHRLYSLEYLDLSSNFLF 155
            T L  L+L                            SLP     L +L  LD+S N L 
Sbjct: 54  YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 156 GSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRIST 215
                 +  + +LQ L L  N      P      P L  LS+ NN L       +  +  
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 216 LSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLD 250
           L  L L +N++            L    L  N   
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG--EIPK 276
           LDL        L   +    LN  +     L      +P  L+   LSNN      ++  
Sbjct: 27  LDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPE-LLSLNLSNNRLYRLDDMSS 85

Query: 277 QYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLN 327
              +   L+ L++S N L+            + +L L  N  S +      
Sbjct: 86  IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 220 DLSKNAISGSLPDLSSL--GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQ 277
           +L    +      +S    GS   L+L   + D +L      + +     +S +  +   
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--NIDVVLNRRSSMAATLRII 60

Query: 278 YGQLNQLQQLDMSFNALRGMP--PPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFF 335
              + +L  L++S N L  +      +   PN+  LNL+ N+       +   G KL   
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120

Query: 336 DISNNKLTGGLPS 348
            +  N L+     
Sbjct: 121 WLDGNSLSDTFRD 133

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 118 TSLRVLSLVSLGI----WGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVK-----L 168
           + LRVL L    +      SL   +   +SL  LDLS+N L  +   ++   V+     L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 169 QTLILDDNFFNNTIPNWFDSL----PSLTFLS 196
           + L+L D +++  + +   +L    PSL  +S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)

Query: 175 DNFFNNTIPNWFDSLPSLTFLSMRNNKL----AGPFPSSIQRISTLSDLDLSKNAISGSL 230
           D                L  L + +  +         +++    +L +LDLS N +  + 
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 231 PDL------SSLGSLNVLNLSDNKLDSNLPKLPRGL 260
                         L  L L D      +    + L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-04
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 143 SLEYLDLSSNFLFGSVPPKISTMVK-LQTLILDDNFFNN----TIPNWFDSLPSLTFLSM 197
            ++ LD+    L  +   ++  +++  Q + LDD          I +     P+L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 198 RNNKLAGPFPSSIQRI-----STLSDLDLS 222
           R+N+L       + +        +  L L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 205 PFPSSIQRISTLSDLDLSKNAISG----SLPD-LSSLGSLNVLNLSDNKLD--------S 251
                 Q  S L  L L+   +S     SL   L +  SL  L+LS+N L          
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 252 NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQ 283
           ++ +    L    L +  +S E+  +   L +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 102 SENFSIDSFVTTLARLTSLRVLSLVSLGI----WGSLPDKIHRLYSLEYLDLSSNFLFGS 157
            E  S   +   L  L   +V+ L   G+       +   +    +L  L+L SN L   
Sbjct: 11  CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70

Query: 158 VPPKISTMV-----KLQTLILDDNFFNNTIPNWF 186
               +   +     K+Q L L +           
Sbjct: 71  GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 19/262 (7%)

Query: 113 TLARLTSLRVLSLVSLGIWGSLP-DKIHRLYSLEYLDLSSNFLFGSVPPKI-STMVKLQT 170
              RL S  V++      +   P  +    + ++++DLS++ +  S    I S   KLQ 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 171 LILDDNFFNNTIPNWFDSLPSLTFLSMR--NNKLAGPFPSSIQRISTLSDLDLSKNAISG 228
           L L+    ++ I N      +L  L++   +        + +   S L +L+LS      
Sbjct: 76  LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 229 SLPDLSSLG-----------SLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQ 277
                 ++            S    NL  + L + + + P  + +    +     +  ++
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 278 YGQLNQLQQLDMSF-NALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFD 336
           + QLN LQ L +S    +       +  +P +  L +      G+L         L    
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---Q 252

Query: 337 ISNNKLTGGLPSCLSNESDKRV 358
           I+ +  T      + N+ ++ +
Sbjct: 253 INCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 242 LNLSDNKLDSNLPK--LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP 299
           L+L+   L  ++    L +G++      +     + +      ++Q +D+S + +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTL 63

Query: 300 PAIFS-LPNISDLNLASNKFSGSLPKNLNCGGKLVFFD 336
             I S    + +L+L   + S  +   L     LV  +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKL-DSNL 253
           L +    L       +     ++     ++ +   L +  S   +  ++LS++ +  S L
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 254 PKLPRG---LVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFN 292
             +      L    L     S  I     + + L +L++S  
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 147 LDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL-AGP 205
           LDL+   L   V  ++ +   +       +F +  +   F S   +  + + N+ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 206 FPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLN 243
               + + S L +L L    +S  + + L+   +L  LN
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 231 PDLSSLGSLNVLNLSDNKLDS---NLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQL 287
           PD       + L  + +       +LP       +   +         +    L +L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 288 DMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKL 342
            +  + LR + P A    P +S LNL+ N    SL      G  L    +S N L
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 1/154 (0%)

Query: 118 TSLRVLSLVSLGIWGSLPDKIHRLYS-LEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
                L L    +     D +      L  L+L  N L G  P        +Q L L +N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSL 236
                    F  L  L  L++ +N+++   P S + +++L+ L+L+ N  + +       
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 237 GSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSF 270
             L   +L+        P   R + +  L ++ F
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 117 LTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN 176
               R L L    I   + +    L   + +D S N +          + +L+TL++++N
Sbjct: 17  AVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNN 73

Query: 177 FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD---- 232
                      +LP LT L + NN L                          +       
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 233 -LSSLGSLNVLNLSD 246
            +  +  + VL+   
Sbjct: 134 VIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 214 STLSDLDLSKNAISGSLPDL-SSLGSLNVLNLSDNKLD--SNLPKLPRGLVMAFLSNNSF 270
               +LDL    I   + +L ++L   + ++ SDN++      P L R L    ++NN  
Sbjct: 18  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR-LKTLLVNNNRI 75

Query: 271 SGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP 323
                     L  L +L ++ N+L  +      +                +  
Sbjct: 76  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 146 YLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGP 205
            L L+ N +        +     +  + D+N       + F        L +   ++   
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 206 FPSSIQRISTLSDLDLSKNAISGSLPDL 233
               ++ +  L             LP L
Sbjct: 217 PSYGLENLKKLRARSTYNL---KKLPTL 241

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 17/242 (7%)

Query: 99  ASLSENFSIDSFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV 158
            S+++  +I+  +     L +   ++     +  ++      L  +  L      +  + 
Sbjct: 1   GSITQPTAINV-IFPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TT 55

Query: 159 PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSD 218
              +  +  L  L L DN   +       +L  +T L +  N L      +  +     D
Sbjct: 56  IEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113

Query: 219 LDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQY 278
           L  ++      L  LS+L  L +    D    +N+  L     + +LS  +         
Sbjct: 114 LTSTQITDVTPLAGLSNLQVLYL----DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL 169

Query: 279 GQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLP-KNLNCGGKLVFFDI 337
             L++L  L    N +  + P  + SLPN+ +++L +N+ S   P  N +    L    +
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTS---NLFIVTL 224

Query: 338 SN 339
           +N
Sbjct: 225 TN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	766
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.5
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.62
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.56
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.32
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.05
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	94.03

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=392.66  Aligned_cols=247  Identities=23%  Similarity=0.415  Sum_probs=185.5

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||+||+|++.+++.||||+++... ...++|.+|++++++++|||||+++|+|.+.+        ..
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~--------~~   75 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA--------PI   75 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--------SC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCC--------ce
Confidence            4688889999999999999999888999999997643 33578999999999999999999999998763        67


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|.+++....  ..++|..+..++.|||.||+|||+.   +|+||||||+|||+|+++.+||+|||+++.
T Consensus        76 ~lv~E~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          76 CLVFEFMEHGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             EEEEECCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             EEEEEecCCCcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchhee
Confidence            99999999999999987543  3588999999999999999999997   899999999999999999999999999976


Q ss_pred             ccccccccc--C-C----CCC--CcccCCCCCCCEeehhHHHHHHhcC-CCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVGG--K-Q----EDP--NSWEMTKLEDDVFSFGFMLLESVAG-PSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~~--~-~----~~~--~~~~~~~~~~DV~SfGvil~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      .........  . +    ..|  .....++.++|||||||++|||+|+ ++|+....  .......+.. .  .+...|.
T Consensus       151 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~--~~~~~~~i~~-~--~~~~~p~  225 (263)
T d1sm2a_         151 VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NSEVVEDIST-G--FRLYKPR  225 (263)
T ss_dssp             --------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC--HHHHHHHHHH-T--CCCCCCT
T ss_pred             ccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC--HHHHHHHHHh-c--CCCCCcc
Confidence            543221110  0 0    011  1123456789999999999999996 44443222  1222222211 1  1111221


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .   .+    ..+.+++.+||+.||++||||+||+++|+++++
T Consensus       226 ~---~~----~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         226 L---AS----THVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             T---SC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             c---cC----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence            1   11    347789999999999999999999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-47  Score=393.41  Aligned_cols=251  Identities=20%  Similarity=0.366  Sum_probs=188.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|++.  ..||||+++..  .....+.|.+|+++|++++|||||+++|++.++        
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~--------   76 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP--------   76 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS--------
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc--------
Confidence            467889999999999999999865  35999998643  345578899999999999999999999998653        


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .+++|||||++|+|.+++....  ..++|..++.++.|||+||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        77 -~~~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGl  150 (276)
T d1uwha_          77 -QLAIVTQWCEGSSLYHHLHIIE--TKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGL  150 (276)
T ss_dssp             -SCEEEEECCCEEEHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCC
T ss_pred             -EEEEEEecCCCCCHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccc
Confidence             4799999999999999997543  3489999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccc------cccCC--CCCCc-----ccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcc
Q 004232          640 SIVSEDINS------VGGKQ--EDPNS-----WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       640 a~~~~~~~~------~~~~~--~~~~~-----~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      |+.......      ..++.  ..|..     ...++.++|||||||++|||+||+.||......  ..+..........
T Consensus       151 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~--~~~~~~~~~~~~~  228 (276)
T d1uwha_         151 ATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIFMVGRGYLS  228 (276)
T ss_dssp             SCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHHTSCC
T ss_pred             eeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChH--HHHHHHHhcCCCC
Confidence            976532211      11111  11111     123466889999999999999999998743221  1111111111111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .... ......+    ..+.+|+.+||+.||++||||+||+++|+.+.+
T Consensus       229 p~~~-~~~~~~~----~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         229 PDLS-KVRSNCP----KAMKRLMAECLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             CCGG-GSCTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             Ccch-hccccch----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            0000 1111122    347789999999999999999999999998864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-47  Score=397.45  Aligned_cols=250  Identities=23%  Similarity=0.408  Sum_probs=183.0

Q ss_pred             CCCcCCceecCCceeEEEEEec-CC---ceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NG---TSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      +|++.++||+|+||+||+|+.. ++   ..||||++... .....++|.+|+++|++++|||||+++|+|.+++      
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~------  100 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST------  100 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS------
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC------
Confidence            3556689999999999999864 23   36999998654 3445678999999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+++|||||++|+|.+++....  ..++|.++..++.|||+||+|||+.   +|+||||||+|||+|.++++||+|||
T Consensus       101 --~~~iv~Ey~~~g~L~~~~~~~~--~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG  173 (299)
T d1jpaa_         101 --PVMIITEFMENGSLDSFLRQND--GQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFG  173 (299)
T ss_dssp             --SCEEEEECCTTEEHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-
T ss_pred             --EEEEEEEecCCCcceeeecccc--CCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcc
Confidence              6899999999999999887543  3489999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc----cC-CCCCCc--------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccC
Q 004232          639 LSIVSEDINSVG----GK-QEDPNS--------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       639 la~~~~~~~~~~----~~-~~~~~~--------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +|+.........    .. ...+..        ...++.++|||||||++|||+| |+.||.....  .+....+.. +.
T Consensus       174 la~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~--~~~~~~i~~-~~  250 (299)
T d1jpaa_         174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN--QDVINAIEQ-DY  250 (299)
T ss_dssp             ----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHT-TC
T ss_pred             cceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCH--HHHHHHHHc-CC
Confidence            997654321110    00 001111        1345667899999999999998 8999864332  222222211 11


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      ...  .|   ...    ...+.+|+.+||+.||++||||+||++.|+++.+.++
T Consensus       251 ~~~--~~---~~~----~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p~  295 (299)
T d1jpaa_         251 RLP--PP---MDC----PSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNPN  295 (299)
T ss_dssp             CCC--CC---TTC----CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             CCC--CC---ccc----hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcChh
Confidence            111  11   111    2347789999999999999999999999999876543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-46  Score=387.65  Aligned_cols=248  Identities=21%  Similarity=0.403  Sum_probs=189.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||+||+|++++++.||||+++... ...++|.+|+++|++++|||||+++|+|.++         .
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~---------~   81 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQE---------P   81 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---------S
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccC---------C
Confidence            46788889999999999999999888999999997543 3356799999999999999999999988653         4


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|.+++.... ...++|..++.++.|||+||+|||+.   +|+||||||+|||+++++.+||+|||+|+
T Consensus        82 ~~iv~Ey~~~g~L~~~~~~~~-~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~  157 (272)
T d1qpca_          82 IYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLAR  157 (272)
T ss_dssp             CEEEEECCTTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eEEEEEeCCCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceE
Confidence            699999999999999876432 23489999999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccc--cCCCC-----CC--cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          642 VSEDINSVG--GKQED-----PN--SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       642 ~~~~~~~~~--~~~~~-----~~--~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ...+.....  .....     |.  ....++.++|||||||++|||+||..|+..... .......+.. .  .+...| 
T Consensus       158 ~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~-~~~~~~~i~~-~--~~~~~p-  232 (272)
T d1qpca_         158 LIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-NPEVIQNLER-G--YRMVRP-  232 (272)
T ss_dssp             ECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHT-T--CCCCCC-
T ss_pred             EccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC-HHHHHHHHHh-c--CCCCCc-
Confidence            654322111  11111     11  113355689999999999999997655442221 1222222211 1  111111 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                        ...+    ..+.+|+.+||+.||++||||+||+++|+..-
T Consensus       233 --~~~~----~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         233 --DNCP----EELYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             --TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --ccCh----HHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence              1112    23778999999999999999999999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-46  Score=391.73  Aligned_cols=251  Identities=23%  Similarity=0.398  Sum_probs=192.9

Q ss_pred             HhcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          481 ATNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       481 ~~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ..++|++.+.||+|+||+||+|+.. +|+.||||+++... ...++|.+|+++|++++|||||+++|+|.+.+       
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~-------   86 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-------   86 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-------
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCC-------
Confidence            3567888999999999999999975 58899999997543 34578999999999999999999999998753       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|||||++|+|.+++.+.. ...++|..+..++.|||.||+|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        87 -~~~iv~E~~~~g~l~~~l~~~~-~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~  161 (287)
T d1opja_          87 -PFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL  161 (287)
T ss_dssp             -SCEEEEECCTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCC
T ss_pred             -eeEEEeecccCcchHHHhhhcc-ccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccc
Confidence             6799999999999999997643 34689999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc--cC-C----CCC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          640 SIVSEDINSVG--GK-Q----EDP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       640 a~~~~~~~~~~--~~-~----~~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      |+.........  .. +    ..|  .....++.++|||||||++|||+||..|+..... ... +......+...+.  
T Consensus       162 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~-~~~-~~~~i~~~~~~~~--  237 (287)
T d1opja_         162 SRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-LSQ-VYELLEKDYRMER--  237 (287)
T ss_dssp             TTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC-HHH-HHHHHHTTCCCCC--
T ss_pred             eeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch-HHH-HHHHHhcCCCCCC--
Confidence            97654322111  00 0    111  1224566789999999999999998766543221 111 1111111111111  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      |   ...+    ..+.+|+.+||+.||.+||||+||++.|+.+.+
T Consensus       238 ~---~~~~----~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         238 P---EGCP----EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred             C---ccch----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            1   1122    247789999999999999999999999987654

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-45  Score=375.90  Aligned_cols=244  Identities=23%  Similarity=0.400  Sum_probs=191.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|++.+.||+|+||+||+|+++++..||||.++.... ..++|.+|+.++++++|||||+++|+|.+.+        .+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~--------~~   74 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR--------PI   74 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSS--------SE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCC--------ce
Confidence            57899999999999999999998888999999976543 3468999999999999999999999998753        68


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++||||+++|+|..++....  ..+++..+.+++.|+|+||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        75 ~iv~Ey~~~g~l~~~~~~~~--~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          75 FIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             EEEEECCTTEEHHHHHHSGG--GCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             EEEEEccCCCcHHHhhhccc--cCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhhee
Confidence            99999999999999876543  3488999999999999999999997   899999999999999999999999999976


Q ss_pred             ccccccccc-CCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          643 SEDINSVGG-KQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       643 ~~~~~~~~~-~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ......... ....+..|        ..++.++|||||||++|||+| |+.||......  +....+.. .  .+...|.
T Consensus       150 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~--~~~~~i~~-~--~~~~~p~  224 (258)
T d1k2pa_         150 VLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQ-G--LRLYRPH  224 (258)
T ss_dssp             CSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHT-T--CCCCCCT
T ss_pred             ccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH--HHHHHHHh-C--CCCCCcc
Confidence            443221111 11111112        345668999999999999998 78888644322  22222221 1  1122222


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      .   .+    ..+.+++.+||+.||++||||+||++.|++
T Consensus       225 ~---~~----~~l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         225 L---AS----EKVYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             T---CC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             c---cc----HHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence            1   11    347799999999999999999999999864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=381.58  Aligned_cols=247  Identities=21%  Similarity=0.357  Sum_probs=188.5

Q ss_pred             cCCCcCCc-eecCCceeEEEEEec---CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAI-MGEGSYGKLYKGRLE---NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~-lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|.+.+. ||+|+||+||+|.+.   ++..||||+++.. .....++|.+|+++|++++|||||+++|+|.++      
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~------   81 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE------   81 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS------
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC------
Confidence            45666664 999999999999753   4567999999754 345568899999999999999999999998753      


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .+|+|||||++|+|.+++....  ..+++..+..++.|||+||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus        82 ---~~~lvmE~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DF  153 (285)
T d1u59a_          82 ---ALMLVMEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDF  153 (285)
T ss_dssp             ---SEEEEEECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCC
T ss_pred             ---eEEEEEEeCCCCcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccc
Confidence               4799999999999999886542  3589999999999999999999997   8999999999999999999999999


Q ss_pred             CCCccccccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          638 GLSIVSEDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       638 Gla~~~~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      |+|+........   ......+..|        ..++.++|||||||++|||+| |+.||......  +....+. .+..
T Consensus       154 Gla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~--~~~~~i~-~~~~  230 (285)
T d1u59a_         154 GLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIE-QGKR  230 (285)
T ss_dssp             TTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHH-TTCC
T ss_pred             hhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH--HHHHHHH-cCCC
Confidence            999765432211   1111111122        234568899999999999998 89998743321  2222221 1111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .++.     ...+    ..+.+|+.+||+.||++||||.+|++.|+....
T Consensus       231 ~~~p-----~~~~----~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         231 MECP-----PECP----PELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             CCCC-----TTCC----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCC-----CcCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            1111     1122    246789999999999999999999999987654

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-45  Score=383.12  Aligned_cols=255  Identities=23%  Similarity=0.381  Sum_probs=187.4

Q ss_pred             cCCCcCCceecCCceeEEEEEecCC-----ceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENG-----TSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g-----~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      +.|+..++||+|+||+||+|++...     ..||||+++.. .....++|.+|+++|++++|||||+++|+|.+.+    
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~----   82 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK----   82 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC----
Confidence            3577789999999999999987532     47999999654 3344567999999999999999999999998753    


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++|||||.+|++.+++.+..  ..++|.+++.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus        83 ----~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~D  153 (283)
T d1mqba_          83 ----PMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSD  153 (283)
T ss_dssp             ----SEEEEEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred             ----ceEEEEEecccCcchhhhhccc--ccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcc
Confidence                6899999999999999886543  3589999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc----c-CC----CCC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSVG----G-KQ----EDP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~~----~-~~----~~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+|+.........    . .+    ..|  .....++.++|||||||++|||+||..|+..... .......+. ....
T Consensus       154 FGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~-~~~~~~~i~-~~~~  231 (283)
T d1mqba_         154 FGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS-NHEVMKAIN-DGFR  231 (283)
T ss_dssp             CCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-HHHHHHHHH-TTCC
T ss_pred             cchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCC-HHHHHHHHh-ccCC
Confidence            99997653321110    0 00    011  1123456689999999999999997666543221 112222221 1111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhccccc
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQETAD  761 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~~~~  761 (766)
                      ...  |   ..    ....+.+|+.+||+.||++||||.||+++|+.+.+.++...
T Consensus       232 ~~~--~---~~----~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p~~l~  278 (283)
T d1mqba_         232 LPT--P---MD----CPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLK  278 (283)
T ss_dssp             CCC--C---TT----CBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGG
T ss_pred             CCC--c---hh----hHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCccccc
Confidence            111  1   11    12347789999999999999999999999999887655443

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-45  Score=375.61  Aligned_cols=250  Identities=22%  Similarity=0.388  Sum_probs=186.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||.||+|++. |+.||||+++...  ..+++.+|++++++++|||||+++|+|.++.       +.
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-------~~   75 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEK-------GG   75 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC---------C
T ss_pred             HHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecC-------Cc
Confidence            356788899999999999999984 7899999997643  3467999999999999999999999997643       25


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +++||||+++|+|.+++.+.. ...++|..+++++.|||.||+|||+.   +|+||||||+||+++.++.+|++|||+++
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~  151 (262)
T d1byga_          76 LYIVTEYMAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK  151 (262)
T ss_dssp             CEEEECCCTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             EEEEEeccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccce
Confidence            799999999999999997542 12489999999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccccCC---CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccccccC
Q 004232          642 VSEDINSVGGKQ---EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMA  715 (766)
Q Consensus       642 ~~~~~~~~~~~~---~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  715 (766)
                      ............   ..|  .....++.++|||||||++|||+| |+.|+........  ...+.. ....++     ..
T Consensus       152 ~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~--~~~i~~-~~~~~~-----~~  223 (262)
T d1byga_         152 EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVEK-GYKMDA-----PD  223 (262)
T ss_dssp             ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH--HHHHTT-TCCCCC-----CT
T ss_pred             ecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHH--HHHHHc-CCCCCC-----Cc
Confidence            654332211111   111  112456778999999999999999 6777654332211  111111 111111     11


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhc
Q 004232          716 TSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQ  757 (766)
Q Consensus       716 ~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~  757 (766)
                      ..+    ..+.+|+.+||+.||.+||||.||+++|++++..+
T Consensus       224 ~~~----~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~~~  261 (262)
T d1byga_         224 GCP----PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE  261 (262)
T ss_dssp             TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cCC----HHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHhCC
Confidence            112    34778999999999999999999999999987643

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=374.54  Aligned_cols=239  Identities=22%  Similarity=0.349  Sum_probs=181.0

Q ss_pred             CceecCCceeEEEEEec---CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEE
Q 004232          489 AIMGEGSYGKLYKGRLE---NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVF  563 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~  563 (766)
                      +.||+|+||+||+|.+.   .++.||||+++..  .....++|.+|+++|++++|||||+++|+|.++         ..+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~---------~~~   83 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE---------SWM   83 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS---------SEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC---------CEE
Confidence            46999999999999864   3568999999653  233467899999999999999999999998653         478


Q ss_pred             EEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCccc
Q 004232          564 LVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVS  643 (766)
Q Consensus       564 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~  643 (766)
                      +||||+++|+|.+++++..   .++|..++.++.|||.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        84 lvmE~~~~g~L~~~l~~~~---~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~  157 (277)
T d1xbba_          84 LVMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL  157 (277)
T ss_dssp             EEEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEcCCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhc
Confidence            9999999999999998653   489999999999999999999997   8999999999999999999999999999765


Q ss_pred             cccccc---ccCCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCccccccc
Q 004232          644 EDINSV---GGKQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       644 ~~~~~~---~~~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      ......   ......+..|        ..++.++|||||||++|||+| |+.||......  +....+. .+...+.  |
T Consensus       158 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~--~~~~~i~-~~~~~~~--p  232 (277)
T d1xbba_         158 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLE-KGERMGC--P  232 (277)
T ss_dssp             CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHH-TTCCCCC--C
T ss_pred             cccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH--HHHHHHH-cCCCCCC--C
Confidence            332111   1111111122        224458899999999999998 89998743321  1111121 1111111  1


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                         ...+    ..+.+|+.+||+.||++||||+||+++|+..-
T Consensus       233 ---~~~~----~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         233 ---AGCP----REMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             ---TTCC----HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             ---cccC----HHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence               1112    24678999999999999999999999998753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=371.42  Aligned_cols=239  Identities=19%  Similarity=0.350  Sum_probs=187.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||++....   ....+.+.+|+++|++++|||||++++++.+.+      
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~------   79 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT------   79 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS------
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC------
Confidence            57899999999999999999964 68999999986432   233577899999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++|||||++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        80 --~~~ivmEy~~~g~L~~~l~~~~---~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG  151 (263)
T d2j4za1          80 --RVYLILEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFG  151 (263)
T ss_dssp             --EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             --EEEEEEeecCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccc
Confidence              7899999999999999997653   389999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc--cc----CCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          639 LSIVSEDINSV--GG----KQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       639 la~~~~~~~~~--~~----~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      +|+........  .+    ..++......++.++|||||||++|||+||+.||.....  ...+..+....  ..+  | 
T Consensus       152 ~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~--~~~--p-  224 (263)
T d2j4za1         152 WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--QETYKRISRVE--FTF--P-  224 (263)
T ss_dssp             SCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHTTC--CCC--C-
T ss_pred             eeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH--HHHHHHHHcCC--CCC--C-
Confidence            99765432211  11    111111224467799999999999999999999964322  22222222111  111  1 


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ...+    ..+.+++.+||+.||++|||++||++
T Consensus       225 --~~~s----~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         225 --DFVT----EGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             --TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --ccCC----HHHHHHHHHHccCCHhHCcCHHHHHc
Confidence              1112    23678999999999999999999975

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-44  Score=380.45  Aligned_cols=255  Identities=22%  Similarity=0.349  Sum_probs=194.0

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceee
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCI  549 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~  549 (766)
                      +++...++|++.+.||+|+||+||+|++.      +++.||||+++... ....++|.+|+++|++++||||++++|+|.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            44456788999999999999999999864      45789999997543 344678999999999999999999999998


Q ss_pred             cCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHhc
Q 004232          550 DGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP---------------------GKVLNWSERLAVLIGVAKAVQFLHT  608 (766)
Q Consensus       550 ~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~yLH~  608 (766)
                      +.+        ..++||||+++|+|.++++....                     ...++|..++.++.|+|.||+|||+
T Consensus        87 ~~~--------~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~  158 (301)
T d1lufa_          87 VGK--------PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE  158 (301)
T ss_dssp             SSS--------SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC--------ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence            753        67999999999999999865321                     2348899999999999999999999


Q ss_pred             CCCCCcccCCCCCCceEEcCCCcEEEecCCCCcccccccccc---cCCC-------CCCcccCCCCCCCEeehhHHHHHH
Q 004232          609 GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVG---GKQE-------DPNSWEMTKLEDDVFSFGFMLLES  678 (766)
Q Consensus       609 ~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~---~~~~-------~~~~~~~~~~~~DV~SfGvil~El  678 (766)
                      .   +|+||||||+|||+|.++++||+|||+|+...+.....   ....       +......++.++|||||||++|||
T Consensus       159 ~---~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~el  235 (301)
T d1lufa_         159 R---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI  235 (301)
T ss_dssp             T---TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             C---CeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHH
Confidence            7   89999999999999999999999999997543321111   1111       111123567789999999999999


Q ss_pred             hcCC-CccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          679 VAGP-SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       679 ltG~-~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ++|. +|+.....  .+....+.. +...++.     ...+    ..+.+|+.+||+.||++||||.||+++|+++.
T Consensus       236 l~~~~~p~~~~~~--~e~~~~v~~-~~~~~~p-----~~~~----~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         236 FSYGLQPYYGMAH--EEVIYYVRD-GNILACP-----ENCP----LELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             HTTTCCTTTTSCH--HHHHHHHHT-TCCCCCC-----TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HccCCCCCCCCCH--HHHHHHHHc-CCCCCCC-----ccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            9996 45553222  222222221 1111111     1112    34788999999999999999999999999874

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=373.10  Aligned_cols=241  Identities=21%  Similarity=0.359  Sum_probs=187.4

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+        .
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--------~   91 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD--------E   91 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT--------E
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECC--------E
Confidence            4699999999999999999985 579999999997655555678999999999999999999999998764        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      +|+|||||++|+|.+++.+.    .+++.+...++.||+.||+|||+.   +|+||||||+|||++.++++||+|||+|+
T Consensus        92 ~~ivmEy~~gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~  164 (293)
T d1yhwa1          92 LWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (293)
T ss_dssp             EEEEEECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEEecCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhhe
Confidence            89999999999999988653    388999999999999999999997   89999999999999999999999999997


Q ss_pred             cccccccc-c---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          642 VSEDINSV-G---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       642 ~~~~~~~~-~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      ........ .   ++.    ++......++.++|||||||++|||+||+.||......  .....+.... ...+..+. 
T Consensus       165 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~~~~~~-~~~~~~~~-  240 (293)
T d1yhwa1         165 QITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL--RALYLIATNG-TPELQNPE-  240 (293)
T ss_dssp             ECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHHC-SCCCSSGG-
T ss_pred             eeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH--HHHHHHHhCC-CCCCCCcc-
Confidence            65322111 1   111    11111234567899999999999999999999743321  1111111111 11111111 


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ..+    ..+.+++.+||+.||.+|||++|+++
T Consensus       241 --~~s----~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         241 --KLS----AIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             --GSC----HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             --cCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence              111    23678999999999999999999975

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=376.72  Aligned_cols=249  Identities=22%  Similarity=0.381  Sum_probs=187.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++|++.+.||+|+||+||+|+.++++.||||+++... ...+.|.+|+.+|++++|||||+++|+|.+.         .
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~---------~   85 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE---------P   85 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS---------S
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecC---------C
Confidence            35788999999999999999999888899999997543 3457899999999999999999999998643         4


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|+|..++.... ...++|.+++.++.+||.||+|||+.   +|+||||||+|||+|+++++||+|||+|+
T Consensus        86 ~~lv~Ey~~~g~l~~~~~~~~-~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~  161 (285)
T d1fmka3          86 IYIVTEYMSKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLAR  161 (285)
T ss_dssp             CEEEECCCTTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             eEEEEEecCCCchhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhh
Confidence            799999999999998886532 23489999999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccc-cCC------CCCC--cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          642 VSEDINSVG-GKQ------EDPN--SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       642 ~~~~~~~~~-~~~------~~~~--~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      ......... ...      ..|.  ....++.++|||||||++|||+||..|+..... ..+.+..+.. ....+     
T Consensus       162 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~-~~~~~~~i~~-~~~~~-----  234 (285)
T d1fmka3         162 LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVLDQVER-GYRMP-----  234 (285)
T ss_dssp             --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHT-TCCCC-----
T ss_pred             hccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC-HHHHHHHHHh-cCCCC-----
Confidence            653221111 000      0111  124566789999999999999997666543222 2222222211 11111     


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....+    ..+.+++.+||+.||++||+|++|+++|+....
T Consensus       235 ~~~~~~----~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~  273 (285)
T d1fmka3         235 CPPECP----ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT  273 (285)
T ss_dssp             CCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTS
T ss_pred             CCcccC----HHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhc
Confidence            111122    247789999999999999999999999998654

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-44  Score=369.59  Aligned_cols=243  Identities=22%  Similarity=0.322  Sum_probs=181.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++... ....+++.+|+++|++++|||||++++++.+.+       
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~-------   76 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGN-------   76 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETT-------
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCc-------
Confidence            35789999999999999999986 479999999987543 233567899999999999999999999998864       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..|+||||+++|+|.+++.+.   ..+++.+...++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        77 -~~~ivmEy~~gg~L~~~l~~~---~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~  149 (271)
T d1nvra_          77 -IQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL  149 (271)
T ss_dssp             -EEEEEEECCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred             -eeEEEEeccCCCcHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchh
Confidence             789999999999999999754   3489999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccc------cccCC--CCCCc--ccC-CCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          640 SIVSEDINS------VGGKQ--EDPNS--WEM-TKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       640 a~~~~~~~~------~~~~~--~~~~~--~~~-~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      |+.......      ..++.  ..|..  ... .+.++||||+||++|||+||+.||.......... ........   .
T Consensus       150 a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~-~~~~~~~~---~  225 (271)
T d1nvra_         150 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-SDWKEKKT---Y  225 (271)
T ss_dssp             CEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHH-HHHHTTCT---T
T ss_pred             heeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHH-HHHhcCCC---C
Confidence            976432111      01111  11111  112 2346899999999999999999997543322221 11111110   0


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+  ....+    ..+.+|+.+||+.||++|||++||++
T Consensus       226 ~~~--~~~~s----~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         226 LNP--WKKID----SAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             STT--GGGSC----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CCc--cccCC----HHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            010  01111    23668899999999999999999864

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=377.56  Aligned_cols=243  Identities=22%  Similarity=0.325  Sum_probs=187.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+        .
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~--------~   83 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN--------N   83 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETT--------E
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC--------e
Confidence            4688889999999999999986 478999999998766666778999999999999999999999998764        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++|||||++|+|.+++.+..  ..+++.++..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+
T Consensus        84 ~~lvmEy~~~g~L~~~~~~~~--~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          84 LWILIEFCAGGAVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhh
Confidence            899999999999999886543  3489999999999999999999997   89999999999999999999999999996


Q ss_pred             cccccc----ccccCC--CCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          642 VSEDIN----SVGGKQ--EDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       642 ~~~~~~----~~~~~~--~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ......    ...++.  ..|.       ....++.++|||||||++|||+||+.||.......  .+..+.... ...+
T Consensus       159 ~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~--~~~~i~~~~-~~~~  235 (288)
T d2jfla1         159 KNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR--VLLKIAKSE-PPTL  235 (288)
T ss_dssp             ECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG--HHHHHHHSC-CCCC
T ss_pred             ccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH--HHHHHHcCC-CCCC
Confidence            543211    111111  1111       12335678999999999999999999987543221  111221111 1111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ..+.   ..+    ..+.+|+.+||+.||++|||++|+++
T Consensus       236 ~~~~---~~s----~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         236 AQPS---RWS----SNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             SSGG---GSC----HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             Cccc---cCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1111   111    23678999999999999999999975

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-44  Score=382.02  Aligned_cols=249  Identities=22%  Similarity=0.380  Sum_probs=185.5

Q ss_pred             hcCCCcCCceecCCceeEEEEEecC------CceEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLEN------GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~~------g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||+||+|+...      ...||||.+... .....+.+.+|+.+|+++ +|||||+++|+|.+.+ 
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~-  114 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG-  114 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC-
Confidence            4678899999999999999998642      236999998654 334456789999999998 8999999999998764 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC--------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP--------------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPG  613 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~--------------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  613 (766)
                             ..++|||||++|+|.+++++...                    ...++|..++.++.||+.||+|||+.   +
T Consensus       115 -------~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~  184 (325)
T d1rjba_         115 -------PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---S  184 (325)
T ss_dssp             -------SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             -------eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence                   68999999999999999976431                    13489999999999999999999997   8


Q ss_pred             cccCCCCCCceEEcCCCcEEEecCCCCccccccccc---cc---CC--CCC--CcccCCCCCCCEeehhHHHHHHhc-CC
Q 004232          614 FFNNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSV---GG---KQ--EDP--NSWEMTKLEDDVFSFGFMLLESVA-GP  682 (766)
Q Consensus       614 ivHrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~---~~---~~--~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~  682 (766)
                      |+||||||+|||++.++.+||+|||+|+........   ..   +.  ..|  .....++.++|||||||++|||+| |+
T Consensus       185 IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~  264 (325)
T d1rjba_         185 CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV  264 (325)
T ss_dssp             EEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred             eeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCC
Confidence            999999999999999999999999999765432211   00   10  011  112456678999999999999998 89


Q ss_pred             CccccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 004232          683 SVAARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQY  752 (766)
Q Consensus       683 ~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~  752 (766)
                      .||.......  .+..+...+...+.  |   ...+    ..+.+|+.+||+.||++||||+||+++|..
T Consensus       265 ~Pf~~~~~~~--~~~~~~~~~~~~~~--p---~~~~----~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         265 NPYPGIPVDA--NFYKLIQNGFKMDQ--P---FYAT----EEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             CSSTTCCCSH--HHHHHHHTTCCCCC--C---TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             CCCCCCCHHH--HHHHHHhcCCCCCC--C---CcCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence            9986433211  11122211111111  1   1112    247789999999999999999999999863

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-44  Score=372.35  Aligned_cols=248  Identities=23%  Similarity=0.324  Sum_probs=178.8

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+.+.+|+++|++++|||||++++++.+...      
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~------   77 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTN------   77 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC---------
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCC------
Confidence            6799999999999999999985 579999999986543  3446779999999999999999999999876431      


Q ss_pred             ceEEEEEEccCCCChhhhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCCCCCceEEcCCCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENT-PGKVLNWSERLAVLIGVAKAVQFLHTGV--IPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                      +.+|+|||||++|+|.+++.+.. ....+++.....++.|++.||+|||+..  ..+|+||||||+|||++.++.+||+|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            35899999999999999986431 2345899999999999999999999852  12599999999999999999999999


Q ss_pred             CCCCccccccccc----ccCCC--CC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          637 YGLSIVSEDINSV----GGKQE--DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       637 FGla~~~~~~~~~----~~~~~--~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      ||+|+........    .++..  .|  .....++.++|||||||++|||+||+.||.....  .+....+.. .....+
T Consensus       158 FG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~--~~~~~~i~~-~~~~~~  234 (269)
T d2java1         158 FGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIRE-GKFRRI  234 (269)
T ss_dssp             HHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHH-TCCCCC
T ss_pred             ccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH--HHHHHHHHc-CCCCCC
Confidence            9999765432211    11111  11  1123456789999999999999999999864322  222222211 111111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                           ....+    ..+.+|+.+||+.||.+|||++|+++
T Consensus       235 -----~~~~s----~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         235 -----PYRYS----DELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             -----CTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -----CcccC----HHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                 11122    23678999999999999999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-43  Score=365.02  Aligned_cols=245  Identities=23%  Similarity=0.299  Sum_probs=182.4

Q ss_pred             CcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          486 DMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++.+.||+|+||+||+|+.. +++.||+|++...  .....+.+.+|+++|++++|||||++++++.+....    ...+
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~----~~~~   87 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKG----KKCI   87 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSS----CEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecccc----CCEE
Confidence            55668999999999999864 6889999998654  344567899999999999999999999998763211    1368


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc-CCCcEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN-EHRIAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld-~~~~~kl~DFGla~  641 (766)
                      ++||||+++|+|.+++.+..   .+++.....++.||++||+|||++. ++|+||||||+|||++ +++.+||+|||+|+
T Consensus        88 ~ivmE~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~  163 (270)
T d1t4ha_          88 VLVTELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  163 (270)
T ss_dssp             EEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEeCCCCCcHHHHHhccc---cccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence            99999999999999997653   4889999999999999999999863 2499999999999996 57899999999997


Q ss_pred             cccccccc--ccCCC--CCC-cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccccCC
Q 004232          642 VSEDINSV--GGKQE--DPN-SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVVMAT  716 (766)
Q Consensus       642 ~~~~~~~~--~~~~~--~~~-~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  716 (766)
                      ........  .++..  .|. ....++.++|||||||++|||+||+.||...... ......+.. .......+    ..
T Consensus       164 ~~~~~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~-~~~~~~i~~-~~~~~~~~----~~  237 (270)
T d1t4ha_         164 LKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNA-AQIYRRVTS-GVKPASFD----KV  237 (270)
T ss_dssp             GCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-HHHHHHHTT-TCCCGGGG----GC
T ss_pred             eccCCccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccH-HHHHHHHHc-CCCCcccC----cc
Confidence            64432211  11111  111 1234677899999999999999999999643221 111222211 11111111    11


Q ss_pred             CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          717 SSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       717 ~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+    ..+.+|+.+||+.||++|||++|+++
T Consensus       238 ~~----~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         238 AI----PEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             CC----HHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CC----HHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            12    23678999999999999999999975

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-43  Score=368.49  Aligned_cols=245  Identities=22%  Similarity=0.351  Sum_probs=185.1

Q ss_pred             CCceecCCceeEEEEEecC----CceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          488 SAIMGEGSYGKLYKGRLEN----GTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      .++||+|+||+||+|++.+    ...||||+++.. .....++|.+|+++|++++|||||+++|+|.+.+       ...
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-------~~~  104 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE-------GSP  104 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETT-------TEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecC-------Cce
Confidence            4689999999999999643    236999999753 4555688999999999999999999999998754       368


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ++|||||++|+|.+++....  ..+++..+++++.|+|.||.|+|+.   +|+||||||+|||+|+++.+||+|||+++.
T Consensus       105 ~lv~E~~~~g~l~~~~~~~~--~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         105 LVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD  179 (311)
T ss_dssp             EEEEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCC
T ss_pred             EEEEEEeecCchhhhhcccc--ccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhh
Confidence            99999999999999887543  3478899999999999999999997   899999999999999999999999999976


Q ss_pred             cccccccccC----CCCCC--------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccc
Q 004232          643 SEDINSVGGK----QEDPN--------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVD  710 (766)
Q Consensus       643 ~~~~~~~~~~----~~~~~--------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d  710 (766)
                      ..........    ...+.        ....++.++|||||||++|||+||+.|+..... ..+....+. .+.  +...
T Consensus       180 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~-~~~~~~~i~-~g~--~~~~  255 (311)
T d1r0pa_         180 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDITVYLL-QGR--RLLQ  255 (311)
T ss_dssp             TTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHH-TTC--CCCC
T ss_pred             ccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC-HHHHHHHHH-cCC--CCCC
Confidence            5332111100    00111        123456789999999999999998877653221 111111111 111  1112


Q ss_pred             ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          711 PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      |.   ..+    ..+.+|+.+||+.||++||+|.||++.|+.+.+
T Consensus       256 p~---~~~----~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~  293 (311)
T d1r0pa_         256 PE---YCP----DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  293 (311)
T ss_dssp             CT---TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cc---cCc----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            21   111    247789999999999999999999999999875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-43  Score=373.06  Aligned_cols=253  Identities=25%  Similarity=0.443  Sum_probs=188.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc--eEEEEEccCC-hhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT--SVAIRCLPSS-KKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~-~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.++||+|+||+||+|++. +|.  .||||+++.. .....++|.+|+++|+++ +|||||+++|+|.+.+     
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~-----   84 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRG-----   84 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETT-----
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCC-----
Confidence            57888899999999999999865 444  5888888643 334567899999999998 7999999999998764     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcC-------------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCce
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISEN-------------TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNI  624 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~-------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NI  624 (766)
                         ..++||||+++|+|.+++++.             .....++|..+..++.|||+||.|+|+.   +|+||||||+||
T Consensus        85 ---~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NI  158 (309)
T d1fvra_          85 ---YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNI  158 (309)
T ss_dssp             ---EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred             ---eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceE
Confidence               789999999999999999754             1234689999999999999999999997   899999999999


Q ss_pred             EEcCCCcEEEecCCCCcccccccccccCCCC-----C--CcccCCCCCCCEeehhHHHHHHhcCCC-ccccCccchHHHH
Q 004232          625 LLNEHRIAKLSDYGLSIVSEDINSVGGKQED-----P--NSWEMTKLEDDVFSFGFMLLESVAGPS-VAARKGQFLQEEL  696 (766)
Q Consensus       625 Lld~~~~~kl~DFGla~~~~~~~~~~~~~~~-----~--~~~~~~~~~~DV~SfGvil~ElltG~~-p~~~~~~~~~~~~  696 (766)
                      |++.++.+||+|||+++..............     |  .....++.++|||||||++|||++|.. |+...  ...+..
T Consensus       159 L~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~--~~~~~~  236 (309)
T d1fvra_         159 LVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM--TCAELY  236 (309)
T ss_dssp             EECGGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHH
T ss_pred             EEcCCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC--CHHHHH
Confidence            9999999999999999654332211111101     1  111345568999999999999999865 55422  222222


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhhcc
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQVQE  758 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~~~  758 (766)
                      ..+.. +...+  .|   ...+    ..+.+|+.+||+.||++||||+||++.|+.+.+-+.
T Consensus       237 ~~i~~-~~~~~--~~---~~~~----~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         237 EKLPQ-GYRLE--KP---LNCD----DEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             HHGGG-TCCCC--CC---TTBC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHh-cCCCC--CC---ccCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence            22221 11111  11   1111    347789999999999999999999999999886443

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-44  Score=368.19  Aligned_cols=246  Identities=18%  Similarity=0.321  Sum_probs=180.4

Q ss_pred             cCCCcCCceecCCceeEEEEEec--C--CceEEEEEccCC---hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE--N--GTSVAIRCLPSS---KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~--~--g~~vAvK~l~~~---~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      ++|++.+.||+|+||.||+|++.  +  ...||||+++..   .....++|.+|+.+|++++|||||+++|+|.++    
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~----   83 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP----   83 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec----
Confidence            56888999999999999999863  2  247899998654   234467899999999999999999999999764    


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEe
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLS  635 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~  635 (766)
                           ..++||||+++|++.+++..+.  ..+++..++.++.|||.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        84 -----~~~lv~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~  153 (273)
T d1u46a_          84 -----PMKMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIG  153 (273)
T ss_dssp             -----SCEEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEEC
T ss_pred             -----chheeeeeecCcchhhhhhccc--CCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeec
Confidence                 4689999999999998876543  3489999999999999999999997   89999999999999999999999


Q ss_pred             cCCCCccccccccccc---CCCCCCcc--------cCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhccc
Q 004232          636 DYGLSIVSEDINSVGG---KQEDPNSW--------EMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQE  703 (766)
Q Consensus       636 DFGla~~~~~~~~~~~---~~~~~~~~--------~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~  703 (766)
                      |||+++..........   ....+..|        ..++.++|||||||++|||+| |+.||....  ..+....+....
T Consensus       154 DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~--~~~~~~~i~~~~  231 (273)
T d1u46a_         154 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN--GSQILHKIDKEG  231 (273)
T ss_dssp             CCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHHHHHHHHTSC
T ss_pred             cchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcC--HHHHHHHHHhCC
Confidence            9999976533221110   11111122        234457899999999999998 899986432  222223332222


Q ss_pred             CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 004232          704 GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYA  753 (766)
Q Consensus       704 ~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~  753 (766)
                      ...+.     ....+    ..+.+|+.+||+.||++||||.||++.|+++
T Consensus       232 ~~~~~-----~~~~~----~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         232 ERLPR-----PEDCP----QDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCCCC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCC-----ccccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            11111     11112    2377899999999999999999999999875

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-43  Score=365.25  Aligned_cols=249  Identities=19%  Similarity=0.336  Sum_probs=182.2

Q ss_pred             hcCCCcCCceecCCceeEEEEEec----CCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE----NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .++|++.+.||+|+||+||+|+..    .+..||||.++... ....+.+.+|+++|++++|||||+++|+|.+.     
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~-----   80 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN-----   80 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----
Confidence            357888999999999999999864    24579999986543 34467899999999999999999999998643     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++||||+++|++.+++....  ..+++..++.++.||++||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        81 ----~~~iv~E~~~~g~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~D  151 (273)
T d1mp8a_          81 ----PVWIIMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGD  151 (273)
T ss_dssp             ----SCEEEEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred             ----eEEEEEEeccCCcHHhhhhccC--CCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEcc
Confidence                5799999999999999876543  3589999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc-cCCCCCCc--------ccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCcc
Q 004232          637 YGLSIVSEDINSVG-GKQEDPNS--------WEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGRQ  706 (766)
Q Consensus       637 FGla~~~~~~~~~~-~~~~~~~~--------~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~  706 (766)
                      ||+|+......... .....+..        ...++.++|||||||++|||+| |..|+........  ...+.. ....
T Consensus       152 fG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~--~~~i~~-~~~~  228 (273)
T d1mp8a_         152 FGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--IGRIEN-GERL  228 (273)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HHHHHT-TCCC
T ss_pred             chhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHH--HHHHHc-CCCC
Confidence            99997654321111 11111111        1345668999999999999998 7888864332211  111111 1111


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          707 RLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       707 ~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      .+     ....+    ..+.+|+.+||+.||.+||||.||++.|+.+.+-
T Consensus       229 ~~-----~~~~~----~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         229 PM-----PPNCP----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             CC-----CTTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC-----CCCCC----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            11     11122    2477899999999999999999999999988653

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=376.56  Aligned_cols=194  Identities=21%  Similarity=0.298  Sum_probs=161.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|+++|++++|||||+++++|.+.+       
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~-------   77 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDG-------   77 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSS-------
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-------
Confidence            46799999999999999999996 47999999998754 3344678999999999999999999999998764       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .+++|||||++|+|.+++.+..   .+++.....++.|++.||.|||+.+  +|+||||||+|||++.++++||+|||+
T Consensus        78 -~~~iVmEy~~gg~L~~~l~~~~---~l~~~~~~~~~~qil~aL~yLH~~~--~IiHRDiKP~NILl~~~~~vkl~DFGl  151 (322)
T d1s9ja_          78 -EISICMEHMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGV  151 (322)
T ss_dssp             -EEEEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             -EEEEEEEcCCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHhC--CEEccccCHHHeeECCCCCEEEeeCCC
Confidence             7899999999999999997653   3899999999999999999999732  799999999999999999999999999


Q ss_pred             Ccccccccc--cccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccC
Q 004232          640 SIVSEDINS--VGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARK  688 (766)
Q Consensus       640 a~~~~~~~~--~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~  688 (766)
                      |+...+...  ..++.    ++......++.++||||+||++|||+||+.||...
T Consensus       152 a~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         152 SGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             CHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             ccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            976433211  11111    11112245778999999999999999999998643

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-44  Score=374.57  Aligned_cols=259  Identities=16%  Similarity=0.318  Sum_probs=185.8

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      ++|.+.+.||+|+||.||+|++ +|+.||||+++.... .....+.|+..+++++|||||+++|+|.+.+..    ...+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~-~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~----~~~~   76 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGT----WTQL   76 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSS----SEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCc----ceEE
Confidence            3466778999999999999997 589999999865432 122234456666788999999999999876421    2368


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGV-----IPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                      ++|||||++|+|.+++++.    .++|..++.++.++|.||+|+|+..     .++|+||||||+|||+|+++.+||+||
T Consensus        77 ~lv~Ey~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DF  152 (303)
T d1vjya_          77 WLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  152 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCC
T ss_pred             EEEEecccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEec
Confidence            9999999999999999864    3899999999999999999999741     358999999999999999999999999


Q ss_pred             CCCcccccccccc-----cCCCCCC-----ccc--------CCCCCCCEeehhHHHHHHhcCCCccccCccc--------
Q 004232          638 GLSIVSEDINSVG-----GKQEDPN-----SWE--------MTKLEDDVFSFGFMLLESVAGPSVAARKGQF--------  691 (766)
Q Consensus       638 Gla~~~~~~~~~~-----~~~~~~~-----~~~--------~~~~~~DV~SfGvil~ElltG~~p~~~~~~~--------  691 (766)
                      |+++.........     .....+.     ...        .++.++|||||||++|||+||..|+......        
T Consensus       153 Gl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~  232 (303)
T d1vjya_         153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  232 (303)
T ss_dssp             TTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred             CccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcc
Confidence            9997653322110     0001111     111        1234689999999999999998876432211        


Q ss_pred             ----hHHHHhhhhcccCccccccccccCC-CCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          692 ----LQEELDSLNSQEGRQRLVDPVVMAT-SSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       692 ----~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                          ............    ..+|.+... ...+....+.+|+.+||+.||++||||.||+++|+++.+
T Consensus       233 ~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  297 (303)
T d1vjya_         233 PSDPSVEEMRKVVCEQ----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             CSSCCHHHHHHHHTTS----CCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhcc----ccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence                111111111111    112211111 122455668899999999999999999999999998864

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-43  Score=370.13  Aligned_cols=240  Identities=24%  Similarity=0.311  Sum_probs=185.6

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .|+..+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||+++|++.+.+       
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~-------   88 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREH-------   88 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT-------
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECC-------
Confidence            488889999999999999985 578999999986543   344577999999999999999999999998763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..|+|||||++|++..++....   .+++..+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        89 -~~~iv~E~~~~g~l~~~~~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~  161 (309)
T d1u5ra_          89 -TAWLVMEYCLGSASDLLEVHKK---PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGS  161 (309)
T ss_dssp             -EEEEEEECCSEEHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTT
T ss_pred             -EEEEEEEecCCCchHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeeccc
Confidence             7899999999999987765543   489999999999999999999997   899999999999999999999999999


Q ss_pred             CcccccccccccCCC--CCC-----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDINSVGGKQE--DPN-----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~~~~~~~~--~~~-----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+.........++..  .|.     ....++.++|||||||++|||++|+.||.....  ...+..+.... ...+..  
T Consensus       162 a~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~--~~~~~~i~~~~-~~~~~~--  236 (309)
T d1u5ra_         162 ASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNE-SPALQS--  236 (309)
T ss_dssp             CBSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSC-CCCCSC--
T ss_pred             ccccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCC-CCCCCC--
Confidence            976544332222211  111     112356789999999999999999999864322  22222222111 111111  


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        ...+    ..+.+++.+||+.||.+|||++|+++
T Consensus       237 --~~~s----~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         237 --GHWS----EYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             --TTSC----HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             --CCCC----HHHHHHHHHHCcCChhHCcCHHHHHh
Confidence              1112    23778999999999999999999975

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-43  Score=369.42  Aligned_cols=247  Identities=21%  Similarity=0.336  Sum_probs=185.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCc----eEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGT----SVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDD  556 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~  556 (766)
                      .+|++.++||+|+||+||+|++. +|+    .||||+++.. .....++|.+|+++|++++|||||+++|+|.++     
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-----   83 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   83 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-----
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----
Confidence            46899999999999999999864 443    6899988654 334567899999999999999999999999874     


Q ss_pred             cCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEec
Q 004232          557 YAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSD  636 (766)
Q Consensus       557 ~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~D  636 (766)
                          ..++++||+.+|+|.+++....  ..++|..++.++.|||.||+|||++   +|+||||||+|||++.++++||+|
T Consensus        84 ----~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~D  154 (317)
T d1xkka_          84 ----TVQLITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITD  154 (317)
T ss_dssp             ----SEEEEEECCTTCBHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECC
T ss_pred             ----CeeEEEEeccCCcccccccccc--cCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeec
Confidence                4689999999999999887653  3589999999999999999999997   899999999999999999999999


Q ss_pred             CCCCcccccccccc--c----CC--CCC--CcccCCCCCCCEeehhHHHHHHhc-CCCccccCccchHHHHhhhhcccCc
Q 004232          637 YGLSIVSEDINSVG--G----KQ--EDP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAARKGQFLQEELDSLNSQEGR  705 (766)
Q Consensus       637 FGla~~~~~~~~~~--~----~~--~~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~  705 (766)
                      ||+|+.........  .    +.  ..|  .....++.++|||||||++|||+| |+.|+.........  ..+ ..+..
T Consensus       155 FGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~--~~i-~~~~~  231 (317)
T d1xkka_         155 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEIS--SIL-EKGER  231 (317)
T ss_dssp             CSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHH--HHH-HHTCC
T ss_pred             cccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHH--HHH-HcCCC
Confidence            99997653321110  0    00  011  112345678999999999999999 78887643322211  111 11111


Q ss_pred             cccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          706 QRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       706 ~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                        ...|.   ..    ...+.+|+.+||+.||.+||||.||++.|+.+.+
T Consensus       232 --~~~p~---~~----~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         232 --LPQPP---IC----TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             --CCCCT---TB----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --CCCCc---cc----CHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence              11111   11    1347789999999999999999999999987753

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-43  Score=367.89  Aligned_cols=259  Identities=22%  Similarity=0.325  Sum_probs=183.3

Q ss_pred             HHHHHhcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCccccccee
Q 004232          477 ELKEATNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHC  548 (766)
Q Consensus       477 ~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~  548 (766)
                      +++...++|++.+.||+|+||+||+|+..      +++.||||+++... ....+.+.+|+.++.++ +|||||.+++++
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            33334567999999999999999999853      35689999997543 34456788888888777 689999999998


Q ss_pred             ecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 004232          549 IDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFF  615 (766)
Q Consensus       549 ~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  615 (766)
                      .+.+       ..+++|||||++|+|.++++....             ...++|.++..++.||++||+|||+.   +|+
T Consensus        87 ~~~~-------~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iv  156 (299)
T d1ywna1          87 TKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI  156 (299)
T ss_dssp             CSTT-------SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred             ccCC-------CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCc
Confidence            7654       357999999999999999975321             23488999999999999999999997   899


Q ss_pred             cCCCCCCceEEcCCCcEEEecCCCCccccccccccc--CC-CC-----C--CcccCCCCCCCEeehhHHHHHHhcCC-Cc
Q 004232          616 NNRVKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG--KQ-ED-----P--NSWEMTKLEDDVFSFGFMLLESVAGP-SV  684 (766)
Q Consensus       616 Hrdlk~~NILld~~~~~kl~DFGla~~~~~~~~~~~--~~-~~-----~--~~~~~~~~~~DV~SfGvil~ElltG~-~p  684 (766)
                      ||||||+|||+++++++||+|||+|+..........  .. ..     |  .....++.++|||||||++|||+||. .|
T Consensus       157 HrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p  236 (299)
T d1ywna1         157 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP  236 (299)
T ss_dssp             CSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             CCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCC
Confidence            999999999999999999999999976433221110  00 11     1  11234567899999999999999975 56


Q ss_pred             cccCccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHhh
Q 004232          685 AARKGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQV  756 (766)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~~  756 (766)
                      +......  ..+......+...+..+     ..+    ..+.+++.+||+.||++||||+||+++|+.+.|.
T Consensus       237 ~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~----~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         237 YPGVKID--EEFCRRLKEGTRMRAPD-----YTT----PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             STTCCCS--HHHHHHHHHTCCCCCCT-----TCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHH--HHHHHHHhcCCCCCCCc-----cCC----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            6532211  11111111121111111     111    2377899999999999999999999999998764

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.1e-43  Score=366.71  Aligned_cols=244  Identities=19%  Similarity=0.310  Sum_probs=175.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec-CCceEEEEEccCChh-hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKK-YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      .+.|++.+.||+|+||+||+|+.. +|+.||||++..... ...+.+.+|+++|++++|||||++++++.+.+       
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~-------   80 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGG-------   80 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSS-------
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-------
Confidence            356899999999999999999864 689999999975432 33466889999999999999999999998763       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEec
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKLSD  636 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---~~~~~kl~D  636 (766)
                       .+|+|||||++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||+.   +++.+||+|
T Consensus        81 -~~~lvmE~~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~D  153 (307)
T d1a06a_          81 -HLYLIMQLVSGGELFDRIVEKG---FYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISD  153 (307)
T ss_dssp             -EEEEEECCCCSCBHHHHHHTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECC
T ss_pred             -EEEEEEeccCCCcHHHhhhccc---CCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEec
Confidence             7899999999999999997643   489999999999999999999997   899999999999995   578999999


Q ss_pred             CCCCcccccccccc---cCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          637 YGLSIVSEDINSVG---GKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       637 FGla~~~~~~~~~~---~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      ||+|+.........   ++.    |+......++.++|||||||++|||+||+.||......  .....+....  ....
T Consensus       154 FG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~--~~~~~i~~~~--~~~~  229 (307)
T d1a06a_         154 FGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA--KLFEQILKAE--YEFD  229 (307)
T ss_dssp             C------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHTTC--CCCC
T ss_pred             cceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH--HHHHHHhccC--CCCC
Confidence            99997654322111   111    11112234677899999999999999999999743321  2222222111  1111


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .+ .....+    ..+.+++.+||+.||++|||++|+++
T Consensus       230 ~~-~~~~~s----~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         230 SP-YWDDIS----DSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TT-TTTTSC----HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             Cc-cccCCC----HHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            11 111112    23678999999999999999999976

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.8e-42  Score=370.85  Aligned_cols=246  Identities=19%  Similarity=0.305  Sum_probs=189.7

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++........+.+.+|+++|++++|||||++++++.+.+        
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~--------   96 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN--------   96 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT--------
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--------
Confidence            46799999999999999999986 479999999998776666788999999999999999999999998763        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN--EHRIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld--~~~~~kl~DFG  638 (766)
                      .+|+|||||++|+|.+++.+..  ..+++.....++.||+.||+|||+.   +|+||||||+|||++  .++.+||+|||
T Consensus        97 ~~~ivmE~~~gg~L~~~l~~~~--~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG  171 (350)
T d1koaa2          97 EMVMIYEFMSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG  171 (350)
T ss_dssp             EEEEEECCCCSCBHHHHHTCTT--SCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCT
T ss_pred             EEEEEEEcCCCCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecc
Confidence            7899999999999999986432  3489999999999999999999997   899999999999996  45789999999


Q ss_pred             CCcccccccccccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +|+.............++       .....++.++||||+||++|||+||+.||....  ..+.+..+.....  .. ++
T Consensus       172 ~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~--~~~~~~~i~~~~~--~~-~~  246 (350)
T d1koaa2         172 LTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN--DDETLRNVKSCDW--NM-DD  246 (350)
T ss_dssp             TCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHTCC--CS-CC
T ss_pred             hheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCC--HHHHHHHHHhCCC--CC-Cc
Confidence            997654332211111111       112345668999999999999999999996432  2222222222111  11 11


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ......+    ..+.+++.+||+.||++|||++|+++.
T Consensus       247 ~~~~~~s----~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         247 SAFSGIS----EDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             GGGGGCC----HHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             ccccCCC----HHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1111112    236789999999999999999999763

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-42  Score=361.59  Aligned_cols=243  Identities=20%  Similarity=0.323  Sum_probs=186.2

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh------hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK------KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRD  555 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~------~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~  555 (766)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++...      ....+.+.+|+++|++++|||||++++++.+.+   
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~---   86 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKT---   86 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSS---
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC---
Confidence            5689999999999999999996 579999999986432      123678999999999999999999999998763   


Q ss_pred             CcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC----c
Q 004232          556 DYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR----I  631 (766)
Q Consensus       556 ~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~----~  631 (766)
                           .+|+|||||++|+|.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++    .
T Consensus        87 -----~~~iv~E~~~gg~L~~~i~~~~---~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~  155 (293)
T d1jksa_          87 -----DVILILELVAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPR  155 (293)
T ss_dssp             -----EEEEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCC
T ss_pred             -----EEEEEEEcCCCccccchhcccc---ccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccc
Confidence                 7899999999999999997653   489999999999999999999997   899999999999998776    5


Q ss_pred             EEEecCCCCcccccccccccCCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          632 AKLSDYGLSIVSEDINSVGGKQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +|++|||+|+..............+       .....++.++|||||||++|||+||+.||.....  .+.+..+.... 
T Consensus       156 vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~~~~~i~~~~-  232 (293)
T d1jksa_         156 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLANVSAVN-  232 (293)
T ss_dssp             EEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHTTC-
T ss_pred             eEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH--HHHHHHHHhcC-
Confidence            9999999997654332211111111       1123467789999999999999999999974332  22222221111 


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       .....+ .....+    ..+.+++.+||+.||++|||++||++
T Consensus       233 -~~~~~~-~~~~~s----~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         233 -YEFEDE-YFSNTS----ALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             -CCCCHH-HHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -CCCCch-hcCCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence             111111 111111    23678999999999999999999975

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=2.4e-42  Score=370.15  Aligned_cols=244  Identities=17%  Similarity=0.262  Sum_probs=188.2

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+        .
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--------~  100 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKY--------E  100 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSS--------E
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC--------E
Confidence            5799999999999999999985 579999999998766666778899999999999999999999998753        7


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc--CCCcEEEecCCC
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN--EHRIAKLSDYGL  639 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld--~~~~~kl~DFGl  639 (766)
                      +|+|||||++|+|.+++.+..  ..+++.+...++.||+.||+|||+.   +|+||||||+|||++  .++.+||+|||+
T Consensus       101 ~~ivmE~~~gg~L~~~~~~~~--~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGl  175 (352)
T d1koba_         101 MVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGL  175 (352)
T ss_dssp             EEEEEECCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTT
T ss_pred             EEEEEEcCCCChHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeeccc
Confidence            899999999999998876542  3489999999999999999999997   899999999999998  568999999999


Q ss_pred             Cccccccccc---ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccccccc
Q 004232          640 SIVSEDINSV---GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPV  712 (766)
Q Consensus       640 a~~~~~~~~~---~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~  712 (766)
                      |+........   .++.    ++......++.++||||+||++|||+||+.||.....  ...+..+....  .... +.
T Consensus       176 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~~~--~~~~-~~  250 (352)
T d1koba_         176 ATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCD--WEFD-ED  250 (352)
T ss_dssp             CEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCC--CCCC-SS
T ss_pred             ceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCCC-cc
Confidence            9765432211   1111    1111123456788999999999999999999974332  22222222111  1111 11


Q ss_pred             ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          713 VMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      .....+    ..+.+|+.+||+.||.+|||++|+++
T Consensus       251 ~~~~~s----~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         251 AFSSVS----PEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cccCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111112    23678999999999999999999975

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-43  Score=364.32  Aligned_cols=240  Identities=19%  Similarity=0.283  Sum_probs=185.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||++++++.+.+      
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~------   81 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE------   81 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS------
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC------
Confidence            5699999999999999999986 579999999986532   234577999999999999999999999998753      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|+||||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||
T Consensus        82 --~~~ivmEy~~gg~L~~~~~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG  153 (288)
T d1uu3a_          82 --KLYFGLSYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG  153 (288)
T ss_dssp             --EEEEEECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             --EEEEEEEccCCCCHHHhhhccC---CCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccc
Confidence              7899999999999999987654   389999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccc------cccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCcccc
Q 004232          639 LSIVSEDINS------VGGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRL  708 (766)
Q Consensus       639 la~~~~~~~~------~~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~  708 (766)
                      +|+.......      ..++.    ++......++.++||||+||++|||+||+.||......  .....+....  ..+
T Consensus       154 ~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~--~~~~~i~~~~--~~~  229 (288)
T d1uu3a_         154 TAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEY--LIFQKIIKLE--YDF  229 (288)
T ss_dssp             TCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHTTC--CCC
T ss_pred             cceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHH--HHHHHHHcCC--CCC
Confidence            9976532111      01111    11111234567899999999999999999999743321  2222222111  111


Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          709 VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       709 ~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .     ...+    ..+.+|+.+||+.||.+|||++|+...
T Consensus       230 p-----~~~s----~~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         230 P-----EKFF----PKARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             C-----TTCC----HHHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             C-----ccCC----HHHHHHHHHHccCCHhHCcCHHHHcCC
Confidence            1     1112    236789999999999999999997543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-42  Score=360.48  Aligned_cols=251  Identities=21%  Similarity=0.397  Sum_probs=186.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEec--------CCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE--------NGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDG  551 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~  551 (766)
                      .++|++.+.||+|+||.||+|+..        ++..||||+++... .....++.+|...+.++ +|||||+++|+|.+.
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            467888899999999999999853        23579999997643 34467888999999888 899999999999875


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTP-------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                      +        ..++||||+++|+|.+++.....             ...+++.+++.++.|+|.||+|||+.   +|+|||
T Consensus        92 ~--------~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrD  160 (299)
T d1fgka_          92 G--------PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRD  160 (299)
T ss_dssp             S--------SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred             C--------eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeee
Confidence            3        68999999999999999975532             24589999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCccccccccccc---CCC-----CC--CcccCCCCCCCEeehhHHHHHHhc-CCCcccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG---KQE-----DP--NSWEMTKLEDDVFSFGFMLLESVA-GPSVAAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~---~~~-----~~--~~~~~~~~~~DV~SfGvil~Ellt-G~~p~~~  687 (766)
                      |||+|||++.++.+||+|||+++..........   ...     .|  .....++.++|||||||++|||+| |..|+..
T Consensus       161 iKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~  240 (299)
T d1fgka_         161 LAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG  240 (299)
T ss_dssp             CSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             ecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCC
Confidence            999999999999999999999976543321111   000     01  112456778999999999999998 6777753


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ....  ..+..+. .+...+.  |   ...+    ..+.+|+.+||+.||.+||||+||+++|+.+.+
T Consensus       241 ~~~~--~~~~~i~-~~~~~~~--p---~~~~----~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         241 VPVE--ELFKLLK-EGHRMDK--P---SNCT----NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             CCHH--HHHHHHH-TTCCCCC--C---SSCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCHH--HHHHHHH-cCCCCCC--C---ccch----HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence            3321  2222221 1111111  1   1112    237789999999999999999999999998865

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4.5e-42  Score=355.95  Aligned_cols=243  Identities=19%  Similarity=0.270  Sum_probs=185.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---------hhhHHHHHHHHHHHHhCC-CCCcccccceeecC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---------KYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDG  551 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---------~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~  551 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...         ....+.+.+|+.+|++++ |||||++++++.+.
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5789999999999999999985 579999999986532         122456889999999997 99999999999876


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCc
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRI  631 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~  631 (766)
                      +        .+|+|||||++|+|.+++++..   .+++.....++.||++||+|||+.   +|+||||||+|||++.++.
T Consensus        83 ~--------~~~ivmE~~~~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~  148 (277)
T d1phka_          83 T--------FFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMN  148 (277)
T ss_dssp             S--------EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred             c--------ceEEEEEcCCCchHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCC
Confidence            4        7899999999999999997654   489999999999999999999997   8999999999999999999


Q ss_pred             EEEecCCCCccccccccccc---CC--CCCC--------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhh
Q 004232          632 AKLSDYGLSIVSEDINSVGG---KQ--EDPN--------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDS  698 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~~---~~--~~~~--------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~  698 (766)
                      +||+|||+++..........   +.  ..|.        ....++.++||||+||++|||+||+.||......  .....
T Consensus       149 ~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~--~~~~~  226 (277)
T d1phka_         149 IKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM--LMLRM  226 (277)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHH
T ss_pred             eEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHH--HHHHH
Confidence            99999999976543221111   10  0111        0122456789999999999999999999754322  11222


Q ss_pred             hhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          699 LNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       699 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      +....  .+...+.. ...+    ..+.+++.+||+.||++|||++||++
T Consensus       227 i~~~~--~~~~~~~~-~~~s----~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         227 IMSGN--YQFGSPEW-DDYS----DTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             HHHTC--CCCCTTTG-GGSC----HHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HHhCC--CCCCCccc-ccCC----HHHHHHHHHHccCChhHCcCHHHHHc
Confidence            22111  11111111 1112    24778999999999999999999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-42  Score=365.23  Aligned_cols=251  Identities=22%  Similarity=0.343  Sum_probs=189.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEe------cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhC-CCCCcccccceeecCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL------ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGG  553 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~  553 (766)
                      .++|++.+.||+|+||.||+|++      .+++.||||+++... .....++.+|+.+++++ +|||||+++|+|.+.. 
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~-  100 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG-  100 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC-
Confidence            46788899999999999999985      346789999997543 44566799999999999 6999999999998763 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCC---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTP---------------GKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNR  618 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~---------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrd  618 (766)
                             ..++|||||++|+|.+++++...               ...+++..+..++.|||.||+|||+.   +++|||
T Consensus       101 -------~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrD  170 (311)
T d1t46a_         101 -------PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRD  170 (311)
T ss_dssp             -------SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred             -------EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeecc
Confidence                   57999999999999999976431               22588999999999999999999997   899999


Q ss_pred             CCCCceEEcCCCcEEEecCCCCccccccccccc---CCCCC-------CcccCCCCCCCEeehhHHHHHHhcCCCc-ccc
Q 004232          619 VKTNNILLNEHRIAKLSDYGLSIVSEDINSVGG---KQEDP-------NSWEMTKLEDDVFSFGFMLLESVAGPSV-AAR  687 (766)
Q Consensus       619 lk~~NILld~~~~~kl~DFGla~~~~~~~~~~~---~~~~~-------~~~~~~~~~~DV~SfGvil~ElltG~~p-~~~  687 (766)
                      |||+||+++.++.+|++|||+++..........   ....+       .....++.++|||||||++|||+|+..| +..
T Consensus       171 LKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~  250 (311)
T d1t46a_         171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG  250 (311)
T ss_dssp             CSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred             cccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999976543221110   00011       1123456789999999999999995444 433


Q ss_pred             CccchHHHHhhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 004232          688 KGQFLQEELDSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAA  754 (766)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~  754 (766)
                      ....  ..+..+........  .+   ...+    ..+.+|+.+||+.||.+||||+||+++|+++.
T Consensus       251 ~~~~--~~~~~~i~~~~~~~--~~---~~~~----~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i  306 (311)
T d1t46a_         251 MPVD--SKFYKMIKEGFRML--SP---EHAP----AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (311)
T ss_dssp             CCSS--HHHHHHHHHTCCCC--CC---TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCHH--HHHHHHHhcCCCCC--Cc---cccc----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhh
Confidence            2221  11222222111111  11   1111    34778999999999999999999999999865

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-42  Score=362.88  Aligned_cols=251  Identities=19%  Similarity=0.287  Sum_probs=189.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEec------CCceEEEEEccCC-hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRLE------NGTSVAIRCLPSS-KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.+.||+|+||+||+|++.      +++.||||+++.. .......|.+|++++++++|||||+++|+|...+  
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~--   96 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ--   96 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS--
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC--
Confidence            467888899999999999999863      3678999999754 3344567899999999999999999999997653  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcC-------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISEN-------TPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~-------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                            ..++|||||++|+|.+++...       .....++|..+.+++.++|+||.|||+.   +|+||||||+|||+|
T Consensus        97 ------~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld  167 (308)
T d1p4oa_          97 ------PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVA  167 (308)
T ss_dssp             ------SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEEC
T ss_pred             ------ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeec
Confidence                  679999999999999987642       1223478999999999999999999997   899999999999999


Q ss_pred             CCCcEEEecCCCCccccccccc--ccCC-CCC-------CcccCCCCCCCEeehhHHHHHHhcCC-CccccCccchHHHH
Q 004232          628 EHRIAKLSDYGLSIVSEDINSV--GGKQ-EDP-------NSWEMTKLEDDVFSFGFMLLESVAGP-SVAARKGQFLQEEL  696 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~~~~~~--~~~~-~~~-------~~~~~~~~~~DV~SfGvil~ElltG~-~p~~~~~~~~~~~~  696 (766)
                      +++++||+|||+|+........  .... ..+       .....++.++|||||||++|||+||. .|+..  ....+..
T Consensus       168 ~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~--~~~~~~~  245 (308)
T d1p4oa_         168 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG--LSNEQVL  245 (308)
T ss_dssp             TTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTT--SCHHHHH
T ss_pred             CCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCC--CCHHHHH
Confidence            9999999999999765432211  1111 011       11234556889999999999999995 55542  2222222


Q ss_pred             hhhhcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          697 DSLNSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       697 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      ..+.. +......     ...+    ..+.+++.+||+.||++||||+||+++|+...+
T Consensus       246 ~~i~~-~~~~~~p-----~~~~----~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         246 RFVME-GGLLDKP-----DNCP----DMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HHHHT-TCCCCCC-----TTCC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHh-CCCCCCc-----ccch----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            22222 1111111     1111    347889999999999999999999999987654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.2e-41  Score=357.59  Aligned_cols=297  Identities=26%  Similarity=0.415  Sum_probs=250.6

Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCCCccCCCCCCCCCCCCCccceEecC----CCEEEEEeCCCCCCCCCCCCcccccccc
Q 004232           25 QLQSSQTQVLLQLRKHLEYPKQLEIWINHGADFCYISSSTQVNITCQD----NFITELKIIGDKPSNVGNFDGFASANAS  100 (766)
Q Consensus        25 ~~~~~~~~aLl~~k~~~~~~~~l~~W~~~~~~~C~~~~~~~~gv~C~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~~  100 (766)
                      .|.++|++||++||+++.+|..+++|..+ +|||.-   .|.||+|+.    .+|++|++.+..+.+.            
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~-~d~C~~---~w~gv~C~~~~~~~~v~~L~L~~~~l~g~------------   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNR---TWLGVLCDTDTQTYRVNNLDLSGLNLPKP------------   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTT-SCTTTT---CSTTEEECCSSSCCCEEEEEEECCCCSSC------------
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCCC-CCCCCC---cCCCeEEeCCCCcEEEEEEECCCCCCCCC------------
Confidence            48899999999999999998889999865 799951   135799963    3799999987654431            


Q ss_pred             CCCcccCCcccccccCCCCCCEEeccc-ccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCC
Q 004232          101 LSENFSIDSFVTTLARLTSLRVLSLVS-LGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFN  179 (766)
Q Consensus       101 l~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  179 (766)
                             ..+|+++++|++|++|+|++ |+++|.+|+.|++|++|++|+|++|++.+..|..+..+.+|+.+++++|.+.
T Consensus        66 -------~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          66 -------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             -------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             -------CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccc
Confidence                   23677899999999999986 8899999999999999999999999999988988999999999999999999


Q ss_pred             CCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCC-CEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC
Q 004232          180 NTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL-SDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLP  257 (766)
Q Consensus       180 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~  257 (766)
                      +.+|..++++++|+++++++|.++|.+|..+..+..+ +.+++++|++++..|. +..+. +..                
T Consensus       139 ~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~----------------  201 (313)
T d1ogqa_         139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF----------------  201 (313)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE----------------
T ss_pred             ccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccc----------------
Confidence            9999999999999999999999999999988888776 7888888888877664 33332 223                


Q ss_pred             CCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeC
Q 004232          258 RGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI  337 (766)
Q Consensus       258 ~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~l  337 (766)
                           +++++|.+.+.+|..++.+++|+.|++++|.+.+.+| .+..+++|+.|+|++|+|+|.+|+.+..+++|++|||
T Consensus       202 -----l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         202 -----VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             -----EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             -----ccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence                 4455566677888888899999999999999988776 6888899999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCCCCceeecCCCc-CCC
Q 004232          338 SNNKLTGGLPSCLSNESDKRVVKFRGNC-LSS  368 (766)
Q Consensus       338 s~N~l~g~~p~~~~~~~~l~~l~l~~N~-l~~  368 (766)
                      ++|+|+|.+|. ++++++|+.+++++|+ ++|
T Consensus       276 s~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         276 SFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             cCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            99999999985 5778889999999985 565

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-41  Score=357.14  Aligned_cols=240  Identities=20%  Similarity=0.265  Sum_probs=186.4

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+.+|++++|||||++++++.+.+     
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~-----   78 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHD-----   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSS-----
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecccc-----
Confidence            46799999999999999999985 579999999997542   234677899999999999999999999998764     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         .+|+|||||++|+|.+++.+..   .++......++.|++.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus        79 ---~~~iv~ey~~gg~L~~~~~~~~---~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DF  149 (337)
T d1o6la_          79 ---RLCFVMEYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDF  149 (337)
T ss_dssp             ---EEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             ---ccccceeccCCCchhhhhhccc---CCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeec
Confidence               7999999999999999998754   378888899999999999999998   8999999999999999999999999


Q ss_pred             CCCcccccccc----c-c---cCCCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINS----V-G---GKQEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~----~-~---~~~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |+|+.......    . +   +..++......++.++||||+||++|||+||+.||......  .....+....  ..+ 
T Consensus       150 G~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~--~~~~~i~~~~--~~~-  224 (337)
T d1o6la_         150 GLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--RLFELILMEE--IRF-  224 (337)
T ss_dssp             TTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC--CCC-
T ss_pred             ccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHH--HHHHHHhcCC--CCC-
Confidence            99975432111    1 1   11122222345677899999999999999999998754322  2122221111  111 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPS-----FEDILW  748 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~  748 (766)
                       |   ...+    ..+.+|+.+|++.||.+||+     +.||++
T Consensus       225 -p---~~~s----~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         225 -P---RTLS----PEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             -C---TTSC----HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             -C---ccCC----HHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence             1   1122    23678999999999999995     677765

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-41  Score=352.64  Aligned_cols=239  Identities=21%  Similarity=0.336  Sum_probs=186.1

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+.+|++++|||||++++++.+.+      
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~------   77 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ------   77 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS------
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCC------
Confidence            5799999999999999999996 569999999986532   234678999999999999999999999998764      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        .+|+|||||++|++..++....   .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        78 --~~~ivmE~~~gg~l~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG  149 (316)
T d1fota_          78 --QIFMIMDYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFG  149 (316)
T ss_dssp             --EEEEEECCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCS
T ss_pred             --eeeeEeeecCCccccccccccc---cccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCc
Confidence              7899999999999999887654   377888889999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-ccCCC--CC--CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDINSV-GGKQE--DP--NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~~~-~~~~~--~~--~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      +|+........ .++..  .|  .....++.++||||+||++|||+||+.||.....  ......+....  ..+  |  
T Consensus       150 ~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~~~--~~~--p--  221 (316)
T d1fota_         150 FAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--MKTYEKILNAE--LRF--P--  221 (316)
T ss_dssp             SCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHCC--CCC--C--
T ss_pred             cceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH--HHHHHHHHcCC--CCC--C--
Confidence            99776443221 11111  11  1223467789999999999999999999975332  22222222111  111  1  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                       ...+    ..+.+++.+|++.||.+||     |++|+++
T Consensus       222 -~~~s----~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         222 -PFFN----EDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             -TTSC----HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             -CCCC----HHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence             1112    2367889999999999996     8888875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.7e-41  Score=349.49  Aligned_cols=253  Identities=16%  Similarity=0.225  Sum_probs=189.7

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||++++++.+.+..    
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~----   82 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA----   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSS----
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCC----
Confidence            5689999999999999999985 579999999997542   34456799999999999999999999998865311    


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....|+||||+++|+|.+++....   .+++.+...++.||+.||+|||+.   +|+||||||+|||++.++..|++|||
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~  156 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFG  156 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCT
T ss_pred             CceEEEEEECCCCCEehhhhcccC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhh
Confidence            125799999999999999887653   489999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-------ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          639 LSIVSEDINSV-------GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       639 la~~~~~~~~~-------~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      .++........       .++.    ++......++.++|||||||++|||+||+.||.....  .+.............
T Consensus       157 ~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~~~~~~~~~~~~~  234 (277)
T d1o6ya_         157 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP--VSVAYQHVREDPIPP  234 (277)
T ss_dssp             TCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHCCCCCG
T ss_pred             hhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH--HHHHHHHHhcCCCCC
Confidence            98643221110       0111    1111123456689999999999999999999974332  222222221111110


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCC-CHHHHHHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRP-SFEDILWNLQYAA  754 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RP-s~~ev~~~L~~~~  754 (766)
                         .......+    ..+.+++.+|++.||.+|| |++|+...|+.+.
T Consensus       235 ---~~~~~~~s----~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         235 ---SARHEGLS----ADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             ---GGTSSSCC----HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ---chhccCCC----HHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence               00111112    2367899999999999999 8999999988764

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-41  Score=356.30  Aligned_cols=244  Identities=15%  Similarity=0.230  Sum_probs=185.0

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||.++.... ....+.+|+++|++++|||||++++++.+.+        
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~--------   74 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESME--------   74 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETT--------
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECC--------
Confidence            35788999999999999999986 4789999999976543 3456889999999999999999999998764        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC--CCcEEEecCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE--HRIAKLSDYG  638 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~--~~~~kl~DFG  638 (766)
                      .+|+|||||++|+|.+++.+..  ..+++.+...++.||+.||+|||+.   +|+||||||+|||++.  ...+||+|||
T Consensus        75 ~~~lvmE~~~gg~L~~~i~~~~--~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG  149 (321)
T d1tkia_          75 ELVMIFEFISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFG  149 (321)
T ss_dssp             EEEEEECCCCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred             EEEEEEecCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccc
Confidence            7999999999999999997543  2489999999999999999999997   8999999999999985  4589999999


Q ss_pred             CCcccccccccccCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccc
Q 004232          639 LSIVSEDINSVGGKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       639 la~~~~~~~~~~~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~  711 (766)
                      +++..............+.       ....++.++||||+||++|||++|+.||.....  ...+..+....  ..+..+
T Consensus       150 ~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~--~~~~~~i~~~~--~~~~~~  225 (321)
T d1tkia_         150 QARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAE--YTFDEE  225 (321)
T ss_dssp             TCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC--CCCCHH
T ss_pred             hhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCC--CCCChh
Confidence            9976543221111111111       112345678999999999999999999974332  22222222111  111111


Q ss_pred             cccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 VVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                       .....+    ..+.+++.+|++.||.+|||++|+++
T Consensus       226 -~~~~~s----~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         226 -AFKEIS----IEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             -HHTTSC----HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -hccCCC----HHHHHHHHHHccCChhHCcCHHHHhc
Confidence             111112    23678999999999999999999986

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-40  Score=357.27  Aligned_cols=243  Identities=21%  Similarity=0.317  Sum_probs=180.6

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh---hhHHHH---HHHHHHHHhCCCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK---YTVRNL---KLRLDLLAKLRHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~---~~e~~~l~~l~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.++||+|+||+||+|+. .+|+.||||++.....   .....+   .+|+++++.++|||||++++++.+.+  
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~--   80 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD--   80 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS--
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC--
Confidence            36899999999999999999996 4799999999864321   112233   34577788889999999999998763  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                            .+|+|||||++|+|.+++.+..   .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||
T Consensus        81 ------~~~ivmE~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl  148 (364)
T d1omwa3          81 ------KLSFILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRI  148 (364)
T ss_dssp             ------EEEEEECCCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEE
T ss_pred             ------EEEEEEEecCCCcHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEE
Confidence                  7899999999999999997653   378889999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCcccccccccc--cCC--CCCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccc
Q 004232          635 SDYGLSIVSEDINSVG--GKQ--EDPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQR  707 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~--~~~--~~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~  707 (766)
                      +|||+|+.........  ++.  ..|.   ....++.++|||||||++|||+||+.||..........+....... ...
T Consensus       149 ~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~-~~~  227 (364)
T d1omwa3         149 SDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM-AVE  227 (364)
T ss_dssp             CCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSC-CCC
T ss_pred             eeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccC-CCC
Confidence            9999997654322111  111  1111   1234567899999999999999999999754332222221111100 011


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPS-----FEDILW  748 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~  748 (766)
                           .....+    ..+.+|+.+||+.||.+|||     ++|+++
T Consensus       228 -----~~~~~s----~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         228 -----LPDSFS----PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             -----CCSSSC----HHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             -----CCCCCC----HHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence                 111112    23678999999999999999     577754

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-40  Score=347.93  Aligned_cols=254  Identities=21%  Similarity=0.273  Sum_probs=179.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh--hhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK--YTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++....  ...+++.+|+++|++++|||||++++++.+.+       
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~-------   74 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTEN-------   74 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETT-------
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccccc-------
Confidence            5799999999999999999985 5799999999965432  23567899999999999999999999998864       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       .+|+||||+.++.+. ++.... ...+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        75 -~~~iv~e~~~~~~~~-~~~~~~-~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~  148 (298)
T d1gz8a_          75 -KLYLVFEFLHQDLKK-FMDASA-LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL  148 (298)
T ss_dssp             -EEEEEEECCSEEHHH-HHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTH
T ss_pred             -ceeEEEeecCCchhh-hhhhhc-ccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCc
Confidence             789999999875444 443322 23589999999999999999999997   899999999999999999999999999


Q ss_pred             Ccccccccccc----cCCC-C-C---CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH--HHHhhhhccc--Ccc
Q 004232          640 SIVSEDINSVG----GKQE-D-P---NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ--EELDSLNSQE--GRQ  706 (766)
Q Consensus       640 a~~~~~~~~~~----~~~~-~-~---~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~--~~~~~~~~~~--~~~  706 (766)
                      |+.........    ++.. . |   ......+.++||||+||++|||++|+.||........  ..........  ...
T Consensus       149 a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  228 (298)
T d1gz8a_         149 ARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWP  228 (298)
T ss_dssp             HHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred             ceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcc
Confidence            97653322111    1111 0 1   1112345689999999999999999999974332111  1111000000  000


Q ss_pred             cc---cc--ccc--cCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RL---VD--PVV--MATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~---~d--~~~--~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ..   .+  +..  ......     .....+.+++.+|++.||++|||++|+++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         229 GVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             TGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            00   00  000  000000     011346789999999999999999999764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=354.05  Aligned_cols=249  Identities=16%  Similarity=0.250  Sum_probs=179.9

Q ss_pred             hcCCCcC-CceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhC-CCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMS-AIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKL-RHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++. ++||+|+||+||+|+. .+|+.||||+++..     ..+.+|++++.++ +|||||++++++.+....    
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~----   80 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAG----   80 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT----
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccC----
Confidence            4678876 4699999999999985 57999999998653     3467899887655 899999999998653110    


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC---CCcEEEe
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE---HRIAKLS  635 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~---~~~~kl~  635 (766)
                      ...+|+|||||++|+|.+++.+.. ...+++.+...++.||+.||+|||+.   +|+||||||+|||+++   ++.+||+
T Consensus        81 ~~~~~ivmEy~~gg~L~~~i~~~~-~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~  156 (335)
T d2ozaa1          81 RKCLLIVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLT  156 (335)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHSCS-CCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEEC
T ss_pred             CCEEEEEEECCCCCcHHHHHHhcC-CCCcCHHHHHHHHHHHHHHHHHHHHc---CCcccccccccccccccccccccccc
Confidence            136899999999999999997643 24589999999999999999999997   8999999999999985   4679999


Q ss_pred             cCCCCcccccccccccC-------CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcccCccc
Q 004232          636 DYGLSIVSEDINSVGGK-------QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQEGRQR  707 (766)
Q Consensus       636 DFGla~~~~~~~~~~~~-------~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~~~~~  707 (766)
                      |||+|+...........       .++......++.++|||||||++|||+||+.||........ ..+..... .....
T Consensus       157 DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~-~~~~~  235 (335)
T d2ozaa1         157 DFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR-MGQYE  235 (335)
T ss_dssp             CCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCC-SCSSS
T ss_pred             ccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHh-cCCCC
Confidence            99999765432221111       11112223455688999999999999999999964332111 11110000 00111


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          708 LVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       708 ~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      +..+..     ......+.+|+.+|++.||++|||+.|+++.
T Consensus       236 ~~~~~~-----~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         236 FPNPEW-----SEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             CCTTHH-----HHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CCCccc-----ccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            111110     1112347889999999999999999999763

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=351.54  Aligned_cols=238  Identities=21%  Similarity=0.299  Sum_probs=181.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHH-hCCCCCcccccceeecCCCCCCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLA-KLRHPHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~-~l~Hpniv~l~g~~~~~~~~~~~  557 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+.++. .++|||||++++++.+.+     
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~-----   76 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE-----   76 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS-----
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC-----
Confidence            5799999999999999999986 479999999996532   233456677777665 689999999999998864     


Q ss_pred             CcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecC
Q 004232          558 AVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDY  637 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DF  637 (766)
                         ..|+|||||++|+|.+++.+..   .++..+...++.||+.||+|||+.   +|+||||||+|||+++++.+||+||
T Consensus        77 ---~~yivmEy~~~g~L~~~i~~~~---~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DF  147 (320)
T d1xjda_          77 ---NLFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADF  147 (320)
T ss_dssp             ---EEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred             ---ceeEEEeecCCCcHHHHhhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceecccc
Confidence               7899999999999999998654   378889999999999999999998   8999999999999999999999999


Q ss_pred             CCCccccccccccc----CC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccc
Q 004232          638 GLSIVSEDINSVGG----KQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLV  709 (766)
Q Consensus       638 Gla~~~~~~~~~~~----~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~  709 (766)
                      |+++..........    +.    ++......++.++|||||||++|||+||+.||.....  ...+..+....  ..  
T Consensus       148 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~--~~--  221 (320)
T d1xjda_         148 GMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--EELFHSIRMDN--PF--  221 (320)
T ss_dssp             TTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CC--
T ss_pred             chhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHHcCC--CC--
Confidence            99975432211111    11    1111223566789999999999999999999974332  22222222111  11  


Q ss_pred             cccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHH-HHH
Q 004232          710 DPVVMATSSLESLSIVISIANKCICSESWSRPSFE-DIL  747 (766)
Q Consensus       710 d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~-ev~  747 (766)
                         .....+    ..+.+|+.+||+.||.+||++. ||.
T Consensus       222 ---~p~~~s----~~~~dli~~~L~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         222 ---YPRWLE----KEAKDLLVKLFVREPEKRLGVRGDIR  253 (320)
T ss_dssp             ---CCTTSC----HHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             ---CCccCC----HHHHHHHHHhcccCCCCCcCHHHHHH
Confidence               111112    2367899999999999999995 675

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-40  Score=346.11  Aligned_cols=252  Identities=17%  Similarity=0.193  Sum_probs=183.2

Q ss_pred             cCCCcCCceecCCceeEEEEEecCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||+||+|+..+|+.||||+++...  ....+.+.+|+.+|++++|||||++++++.+.+        
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~--------   73 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK--------   73 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS--------
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC--------
Confidence            5788899999999999999999899999999996543  233578999999999999999999999998764        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++++||+.++.+..+....   ..++......++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||++
T Consensus        74 ~~~i~~e~~~~~~~~~~~~~~---~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a  147 (286)
T d1ob3a_          74 RLVLVFEHLDQDLKKLLDVCE---GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLA  147 (286)
T ss_dssp             CEEEEEECCSEEHHHHHHTST---TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             ceeEEEEeehhhhHHHHHhhc---CCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccc
Confidence            689999999988877766543   3489999999999999999999997   8999999999999999999999999998


Q ss_pred             ccccccccc----ccCC-CC-C---CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcccC------
Q 004232          641 IVSEDINSV----GGKQ-ED-P---NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQEG------  704 (766)
Q Consensus       641 ~~~~~~~~~----~~~~-~~-~---~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~~------  704 (766)
                      .........    .+.. .. |   ......+.++||||+||++|||++|+.||........ ..+........      
T Consensus       148 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  227 (286)
T d1ob3a_         148 RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN  227 (286)
T ss_dssp             HHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTT
T ss_pred             eecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccc
Confidence            654322110    1111 11 1   1123456789999999999999999999964332111 11110000000      


Q ss_pred             ---cccc------ccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 ---RQRL------VDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ---~~~~------~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         ..+.      ..+.............+.+++.+|++.||++|||++|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             GGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               0000      0000000000001134679999999999999999999974

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-40  Score=354.15  Aligned_cols=239  Identities=18%  Similarity=0.256  Sum_probs=186.0

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh---hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK---KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   ....+.+.+|+++|++++|||||++++++.+..      
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~------  114 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS------  114 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS------
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccc------
Confidence            5799999999999999999986 479999999986432   233567899999999999999999999998763      


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                        ..++||||+.+|+|..++.+..   .+++.....++.||+.||.|||+.   +|+||||||+|||++.++++||+|||
T Consensus       115 --~~~~v~e~~~~g~l~~~l~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG  186 (350)
T d1rdqe_         115 --NLYMVMEYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFG  186 (350)
T ss_dssp             --EEEEEEECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             --ccccccccccccchhhhHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeece
Confidence              7899999999999999997654   388999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccccccc-ccCC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccCccccccccc
Q 004232          639 LSIVSEDINSV-GGKQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEGRQRLVDPVV  713 (766)
Q Consensus       639 la~~~~~~~~~-~~~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  713 (766)
                      +|+........ .++.    ++......++.++|||||||++|||+||+.||.....  ......+....  ...  |  
T Consensus       187 ~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~~~--~~~--p--  258 (350)
T d1rdqe_         187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--IQIYEKIVSGK--VRF--P--  258 (350)
T ss_dssp             TCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC--CCC--C--
T ss_pred             eeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH--HHHHHHHhcCC--CCC--C--
Confidence            99776433211 1111    1111223456789999999999999999999974332  22222222111  111  1  


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCCCCCCC-----CHHHHHH
Q 004232          714 MATSSLESLSIVISIANKCICSESWSRP-----SFEDILW  748 (766)
Q Consensus       714 ~~~~~~~~~~~~~~l~~~C~~~~p~~RP-----s~~ev~~  748 (766)
                       ...+    ..+.+++.+|++.||.+|+     |++|+++
T Consensus       259 -~~~s----~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         259 -SHFS----SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -TTCC----HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -ccCC----HHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence             1112    2367899999999999994     8899875

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=347.60  Aligned_cols=247  Identities=20%  Similarity=0.262  Sum_probs=174.9

Q ss_pred             CCceecCCceeEEEEEe-cCCceEEEEEccCChhh-----hHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          488 SAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKY-----TVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       488 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      .++||+|+||+||+|+. .+|+.||||+++.....     ..+.+.+|+.+|++++|||||++++++.+.+        .
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~--------~   74 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS--------N   74 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT--------C
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC--------c
Confidence            46899999999999995 46999999999654322     1346889999999999999999999998764        6


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCCc
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLSI  641 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla~  641 (766)
                      .++||||+++|++.......   ..+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        75 ~~ivmE~~~~~~~~~~~~~~---~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~  148 (299)
T d1ua2a_          75 ISLVFDFMETDLEVIIKDNS---LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAK  148 (299)
T ss_dssp             CEEEEECCSEEHHHHHTTCC---SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred             eeehhhhhcchHHhhhhhcc---cCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCcccc
Confidence            89999999998887766433   3478888999999999999999997   89999999999999999999999999997


Q ss_pred             ccccccccc----cCC-C-CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCccccccc
Q 004232          642 VSEDINSVG----GKQ-E-DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQRLVDP  711 (766)
Q Consensus       642 ~~~~~~~~~----~~~-~-~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~d~  711 (766)
                      .........    ++. . .|.   ....++.++|||||||++|||+||..||....... ...+.............+.
T Consensus       149 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~  228 (299)
T d1ua2a_         149 SFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM  228 (299)
T ss_dssp             TTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             ccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccch
Confidence            654322111    111 1 111   11234668899999999999999999987443221 1111111100000000000


Q ss_pred             ------c---ccCCCCHH-----HHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          712 ------V---VMATSSLE-----SLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       712 ------~---~~~~~~~~-----~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                            .   ........     ....+.+|+.+|++.||++|||++|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         229 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             hccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                  0   00000111     1134789999999999999999999875

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=346.36  Aligned_cols=257  Identities=17%  Similarity=0.220  Sum_probs=176.5

Q ss_pred             CCCcCCceecCCceeEEEEEec-CCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceE
Q 004232          484 NFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKV  562 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~  562 (766)
                      +|+..++||+|+||+||+|+.. +|+.||||++.....    ...+|+++|++++|||||+++++|...+...  ....+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~--~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKK--DEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CC--SCCEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccC--CceEE
Confidence            4777889999999999999964 699999999976432    2347999999999999999999987653211  11357


Q ss_pred             EEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCCCc
Q 004232          563 FLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGLSI  641 (766)
Q Consensus       563 ~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGla~  641 (766)
                      ++|||||++|.+............+++.++..++.||+.||+|||++   +|+||||||+|||++.++ .+||+|||+++
T Consensus        95 ~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~  171 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAK  171 (350)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCE
T ss_pred             EEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchh
Confidence            99999999875544433222334589999999999999999999997   899999999999999765 89999999997


Q ss_pred             cccccccccc---CCC--CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHH------------hhhh
Q 004232          642 VSEDINSVGG---KQE--DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEEL------------DSLN  700 (766)
Q Consensus       642 ~~~~~~~~~~---~~~--~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~------------~~~~  700 (766)
                      ..........   +..  .|.   ....++.++||||+||++|||++|+.||....... ...+            ....
T Consensus       172 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~  251 (350)
T d1q5ka_         172 QLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN  251 (350)
T ss_dssp             ECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred             hccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhc
Confidence            6533221111   111  111   12345678999999999999999999987443211 1101            0000


Q ss_pred             ccc---CccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          701 SQE---GRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       701 ~~~---~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      ...   .....................+.+|+.+|++.||++|||+.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  303 (350)
T d1q5ka_         252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  303 (350)
T ss_dssp             C---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000   0000000000000000112246789999999999999999999863

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=337.62  Aligned_cols=233  Identities=21%  Similarity=0.328  Sum_probs=176.3

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChh------hhHHHHHHHHHHHHhCC--CCCcccccceeecCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKK------YTVRNLKLRLDLLAKLR--HPHLVCLLGHCIDGGG  553 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~------~~~~~~~~e~~~l~~l~--Hpniv~l~g~~~~~~~  553 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++....      ...+++.+|+.+|++++  |||||++++++.+++ 
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~-   82 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD-   82 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS-
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC-
Confidence            4688999999999999999985 5799999999864321      12344678999999997  899999999998764 


Q ss_pred             CCCcCcceEEEEEEccCC-CChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-CCc
Q 004232          554 RDDYAVNKVFLVYEFMSN-GNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-HRI  631 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~-GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-~~~  631 (766)
                             ..++||||+.+ +++.+++.+..   .+++.....++.|++.||+|||+.   +|+||||||+|||++. ++.
T Consensus        83 -------~~~lv~e~~~~~~~l~~~~~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~  149 (273)
T d1xwsa_          83 -------SFVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGE  149 (273)
T ss_dssp             -------EEEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTE
T ss_pred             -------eEEEEEEeccCcchHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCe
Confidence                   78999999976 67888876543   488999999999999999999997   8999999999999995 479


Q ss_pred             EEEecCCCCcccccccccc--cCC-CC-CC--ccc-CCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhhhcccC
Q 004232          632 AKLSDYGLSIVSEDINSVG--GKQ-ED-PN--SWE-MTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSLNSQEG  704 (766)
Q Consensus       632 ~kl~DFGla~~~~~~~~~~--~~~-~~-~~--~~~-~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~  704 (766)
                      +||+|||+|+.........  ++. .. |.  ... ..+.++||||+||++|||+||+.||....    . +.   ..  
T Consensus       150 vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~----~-i~---~~--  219 (273)
T d1xwsa_         150 LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----E-II---RG--  219 (273)
T ss_dssp             EEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----H-HH---HC--
T ss_pred             EEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch----H-Hh---hc--
Confidence            9999999997654322111  111 11 11  111 22346899999999999999999986321    1 11   00  


Q ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 RQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                      ... ..+    ..+    ..+.+++.+||+.||++|||++|+++
T Consensus       220 ~~~-~~~----~~s----~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         220 QVF-FRQ----RVS----SECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             CCC-CSS----CCC----HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccC-CCC----CCC----HHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            000 111    112    23678999999999999999999976

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=331.48  Aligned_cols=251  Identities=19%  Similarity=0.214  Sum_probs=183.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|+.+|++++|||||+++++|.+..       
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~-------   74 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK-------   74 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-------
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccccc-------
Confidence            5788999999999999999995 578999999986442  345678999999999999999999999998864       


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                       ..++|+||+.++++..++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.
T Consensus        75 -~~~iv~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~  147 (292)
T d1unla_          75 -KLTLVFEFCDQDLKKYFDSCNG---DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGL  147 (292)
T ss_dssp             -EEEEEEECCSEEHHHHHHHTTT---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred             -ceeEEeeecccccccccccccc---ccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecch
Confidence             7899999999999988876543   478889999999999999999997   899999999999999999999999999


Q ss_pred             CcccccccccccC-CC----CCC----cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHHhhh---hcccC---
Q 004232          640 SIVSEDINSVGGK-QE----DPN----SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEELDSL---NSQEG---  704 (766)
Q Consensus       640 a~~~~~~~~~~~~-~~----~~~----~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~~~~---~~~~~---  704 (766)
                      ++........... ..    .+.    .....+.++||||+||++|||++|+.|+...... .+....+   .....   
T Consensus       148 a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~  226 (292)
T d1unla_         148 ARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV-DDQLKRIFRLLGTPTEEQ  226 (292)
T ss_dssp             CEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH-HHHHHHHHHHHCCCCTTT
T ss_pred             hhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCH-HHHHHHHHhhcCCCChhh
Confidence            9765432211110 00    010    1123467889999999999999999986533221 1111111   10000   


Q ss_pred             ---ccccccc----cc-----cCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          705 ---RQRLVDP----VV-----MATSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       705 ---~~~~~d~----~~-----~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                         .....+.    ..     ........-..+.+|+.+|++.||.+|||++||++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         227 WPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               0000000    00     00000011134678999999999999999999865

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-38  Score=334.33  Aligned_cols=256  Identities=18%  Similarity=0.228  Sum_probs=178.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cC-CceEEEEEccCCh--hhhHHHHHHHHHHHHhC---CCCCcccccceeecCCCC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-EN-GTSVAIRCLPSSK--KYTVRNLKLRLDLLAKL---RHPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~-g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l---~Hpniv~l~g~~~~~~~~  554 (766)
                      .++|++.+.||+|+||+||+|+. .+ ++.||||+++...  ......+.+|+.+|+.+   +|||||+++++|......
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46899999999999999999985 34 6779999986432  22233456677766655   899999999998653211


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEE
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKL  634 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl  634 (766)
                         .....+++|||+.+|.+.......  ...+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||
T Consensus        86 ---~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl  157 (305)
T d1blxa_          86 ---RETKLTLVFEHVDQDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKL  157 (305)
T ss_dssp             ---SEEEEEEEEECCSCBHHHHHHHSC--TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred             ---cCceEEEEEEeccCCchhhhhhcc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeee
Confidence               113689999999998876554433  23488999999999999999999997   8999999999999999999999


Q ss_pred             ecCCCCccccccccccc---CC----CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccch-HHHHhhhhcccCcc
Q 004232          635 SDYGLSIVSEDINSVGG---KQ----EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFL-QEELDSLNSQEGRQ  706 (766)
Q Consensus       635 ~DFGla~~~~~~~~~~~---~~----~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~-~~~~~~~~~~~~~~  706 (766)
                      +|||+++..........   +.    ++......++.++||||+||++|||+||+.||....... ...+..........
T Consensus       158 ~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~  237 (305)
T d1blxa_         158 ADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEE  237 (305)
T ss_dssp             CSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGG
T ss_pred             cchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchh
Confidence            99999875433221111   11    111122456778999999999999999999997443211 11111110000000


Q ss_pred             cc----------c-----c--ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 RL----------V-----D--PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ~~----------~-----d--~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                      .+          .     .  +......+    ..+.+|+.+|++.||++|||++|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         238 DWPRDVALPRQAFHSKSAQPIEKFVTDID----ELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             GSCTTCSSCGGGSCCCCCCCGGGTCCSCC----HHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccccccchhhhhccccccchhhccccCC----HHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            00          0     0  00001111    236789999999999999999998753

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-38  Score=336.43  Aligned_cols=255  Identities=16%  Similarity=0.194  Sum_probs=178.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh-hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK-KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      +.|++.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++......    ..
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~----~~   83 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE----QM   83 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT----TC
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeecccc----cc
Confidence            4688899999999999999985 579999999997543 44567889999999999999999999998765311    11


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                      ..++++||+.+|+|.+++...    .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        84 ~~~~l~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          84 KDVYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             CCEEEEEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCce
Confidence            234555677899999999754    388999999999999999999997   8999999999999999999999999999


Q ss_pred             cccccccccc-------cC----CCCC-CcccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHHH-hhhhcccCcc-
Q 004232          641 IVSEDINSVG-------GK----QEDP-NSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEEL-DSLNSQEGRQ-  706 (766)
Q Consensus       641 ~~~~~~~~~~-------~~----~~~~-~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~~-~~~~~~~~~~-  706 (766)
                      +.........       ++    .++. .....++.++||||+||++|||++|+.||........... .......... 
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  236 (345)
T d1pmea_         157 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQED  236 (345)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred             eeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhh
Confidence            6543221110       00    1111 1223345678999999999999999999874432111110 0000000000 


Q ss_pred             ------------ccccccccCCCCHHH-----HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          707 ------------RLVDPVVMATSSLES-----LSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       707 ------------~~~d~~~~~~~~~~~-----~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                                  ....+... ..+...     -..+.+++.+|++.||.+|||++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         237 LNCIINLKARNYLLSLPHKN-KVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHTCCCHHHHHHHHTSCCCC-CCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhhhcccccCCccC-CCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                        00000000 000000     1246789999999999999999999864

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=332.13  Aligned_cols=258  Identities=19%  Similarity=0.318  Sum_probs=180.1

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .+.|++.+.||+|+||+||+|+. .+|+.||||+++..  .....+.+.+|+++|++++|||||+++++|...+...  .
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~--~   94 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLD--D   94 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTT--T
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccc--c
Confidence            35788899999999999999985 57999999999753  3344678899999999999999999999998754211  1


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ...+++||||+ +++|..+.+..    .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||
T Consensus        95 ~~~~~lv~e~~-~~~l~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg  166 (346)
T d1cm8a_          95 FTDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFG  166 (346)
T ss_dssp             CCCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cceEEEEEecc-cccHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhccccccccccccc
Confidence            23579999999 55777766543    389999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc--cCC-CCCCc---ccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhccc--------
Q 004232          639 LSIVSEDINSVG--GKQ-EDPNS---WEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQE--------  703 (766)
Q Consensus       639 la~~~~~~~~~~--~~~-~~~~~---~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~--------  703 (766)
                      +|+.........  +.. ..|..   ....+.++||||+||++|||++|+.||........ ..........        
T Consensus       167 ~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d1cm8a_         167 LARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRL  246 (346)
T ss_dssp             TCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTC
T ss_pred             ceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhh
Confidence            997654432211  111 11111   13456789999999999999999999875432111 0000000000        


Q ss_pred             ----------Ccccccc---ccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH--HHHH
Q 004232          704 ----------GRQRLVD---PVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWN--LQYA  753 (766)
Q Consensus       704 ----------~~~~~~d---~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~--L~~~  753 (766)
                                ...+...   +......+    ..+.+|+.+|++.||++|||++|+++.  ++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~  307 (346)
T d1cm8a_         247 QSDEAKNYMKGLPELEKKDFASILTNAS----PLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL  307 (346)
T ss_dssp             SCHHHHHHHHHSCCCCCCCGGGTCTTCC----HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             cchhhhhhhccCCcccccchHHhccCCC----HHHHHHHHHHCcCChhHCcCHHHHhcChhhCcC
Confidence                      0000000   00011111    236789999999999999999999875  5443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=329.89  Aligned_cols=262  Identities=16%  Similarity=0.214  Sum_probs=178.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||++...  .....+++.+|+++|++++||||+++++++......-...
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            46799999999999999999996 57999999998543  2334567889999999999999999999987643110011


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ...+++||||++++.+.......   ..+.......++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~---~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVL---VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCCCccchhhhcc---cccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecc
Confidence            23589999999998877654432   3477888889999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc--------cCC-C-CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhccc-
Q 004232          639 LSIVSEDINSVG--------GKQ-E-DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQE-  703 (766)
Q Consensus       639 la~~~~~~~~~~--------~~~-~-~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~-  703 (766)
                      +++.........        ++. . .|.   ....++.++|||||||++|||+||+.||........ ..+....... 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~  242 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  242 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             eeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            996543211110        000 0 011   112456789999999999999999999874332111 1111111000 


Q ss_pred             --Cccc---------cccccccCCCCHHH------HHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          704 --GRQR---------LVDPVVMATSSLES------LSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       704 --~~~~---------~~d~~~~~~~~~~~------~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                        ....         +...........+.      ...+.+|+.+|++.||++|||++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         243 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             TTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence              0000         00000000001111      1346789999999999999999999753

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=3.1e-37  Score=328.81  Aligned_cols=248  Identities=17%  Similarity=0.283  Sum_probs=178.6

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||+++...   .+++.+|+++|++++ ||||+++++++.....      .
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~------~  105 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVS------R  105 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTT------C
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCC------C
Confidence            5799999999999999999985 579999999997543   457889999999995 9999999999876431      3


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-cEEEecCCC
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-IAKLSDYGL  639 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-~~kl~DFGl  639 (766)
                      .+++||||+++|+|..+.+      .++......++.||+.||+|||++   +|+||||||+|||++.++ .+||+|||+
T Consensus       106 ~~~~v~e~~~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~  176 (328)
T d3bqca1         106 TPALVFEHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGL  176 (328)
T ss_dssp             SEEEEEECCCSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGG
T ss_pred             ceeEEEeecCCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeeccccc
Confidence            6899999999999987642      378899999999999999999998   899999999999999654 699999999


Q ss_pred             CcccccccccccCCC-----CCC---cccCCCCCCCEeehhHHHHHHhcCCCccccCccchHHH--Hhhh----------
Q 004232          640 SIVSEDINSVGGKQE-----DPN---SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQEE--LDSL----------  699 (766)
Q Consensus       640 a~~~~~~~~~~~~~~-----~~~---~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~~~--~~~~----------  699 (766)
                      |+.............     .|.   ....++.++||||+||++|||++|+.|+..........  +...          
T Consensus       177 a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~  256 (328)
T d3bqca1         177 AEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYI  256 (328)
T ss_dssp             CEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred             ceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhh
Confidence            976543222111111     111   11235678899999999999999999986433211100  0000          


Q ss_pred             --hcccCcccc---c-------cccccC-CCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Q 004232          700 --NSQEGRQRL---V-------DPVVMA-TSSLESLSIVISIANKCICSESWSRPSFEDILW  748 (766)
Q Consensus       700 --~~~~~~~~~---~-------d~~~~~-~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~  748 (766)
                        .........   .       ...... ......-..+.+|+.+|++.||.+|||++|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         257 DKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             HHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              000000000   0       000000 000111234678999999999999999999865

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.6e-38  Score=328.27  Aligned_cols=252  Identities=15%  Similarity=0.230  Sum_probs=178.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcce
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNK  561 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~  561 (766)
                      +.|++.+.||+|+||+||+|+. .+|+.||||.+.....  .+++.+|++++++++|+|+|..+++|...+       +.
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~-------~~   77 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEG-------DY   77 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEET-------TE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecC-------CE
Confidence            4588999999999999999985 5789999998865432  245788999999999988888777766543       36


Q ss_pred             EEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc---CCCcEEEecCC
Q 004232          562 VFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN---EHRIAKLSDYG  638 (766)
Q Consensus       562 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld---~~~~~kl~DFG  638 (766)
                      .++||||+.+ ++...+....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||++   .+..+|++|||
T Consensus        78 ~~ivme~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG  151 (299)
T d1ckia_          78 NVMVMELLGP-SLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFG  151 (299)
T ss_dssp             EEEEEECCCC-BHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCS
T ss_pred             EEEEEEEcCC-chhhhhhhcc--CCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccC
Confidence            8999999954 5655554332  3489999999999999999999997   899999999999976   35579999999


Q ss_pred             CCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcc
Q 004232          639 LSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQ  702 (766)
Q Consensus       639 la~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~  702 (766)
                      +|+...+.....        .....+.       ....++.++|||||||++|||+||+.||........ .........
T Consensus       152 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~  231 (299)
T d1ckia_         152 LAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK  231 (299)
T ss_dssp             SCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHH
T ss_pred             cceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcc
Confidence            997654322110        0001111       112356688999999999999999999864332111 111111000


Q ss_pred             cCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          703 EGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       703 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                        ......+......+    ..+.+++.+||+.+|++||+++++.+.|+.+.+
T Consensus       232 --~~~~~~~~~~~~~p----~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         232 --KMSTPIEVLCKGYP----SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             --HHHSCHHHHTTTSC----HHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             --cCCCChhHhccCCC----HHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence              00000111111112    236788999999999999999999999988754

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-38  Score=331.65  Aligned_cols=242  Identities=23%  Similarity=0.339  Sum_probs=178.5

Q ss_pred             cCCCcCCceecCCceeEEEEEe----cCCceEEEEEccCCh----hhhHHHHHHHHHHHHhCCC-CCcccccceeecCCC
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL----ENGTSVAIRCLPSSK----KYTVRNLKLRLDLLAKLRH-PHLVCLLGHCIDGGG  553 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~----~~~~~~~~~e~~~l~~l~H-pniv~l~g~~~~~~~  553 (766)
                      ++|++.+.||+|+||+||+|+.    .+|+.||||.++...    ....+.+.+|+++|++++| |||+++++++.+.. 
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~-  102 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET-  102 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT-
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC-
Confidence            6699999999999999999984    258899999986432    2234668899999999977 89999999988764 


Q ss_pred             CCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEE
Q 004232          554 RDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAK  633 (766)
Q Consensus       554 ~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~k  633 (766)
                             ..++||||+.+|+|.+++.....   +.......++.|++.|++|+|+.   +|+||||||+|||++.++.+|
T Consensus       103 -------~~~~v~e~~~~~~L~~~i~~~~~---~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vk  169 (322)
T d1vzoa_         103 -------KLHLILDYINGGELFTHLSQRER---FTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVV  169 (322)
T ss_dssp             -------EEEEEECCCCSCBHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred             -------ceeeeeecccccHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEE
Confidence                   78999999999999999976543   56777888999999999999997   899999999999999999999


Q ss_pred             EecCCCCccccccccc--c---cCCC--CCCcc----cCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhhhc
Q 004232          634 LSDYGLSIVSEDINSV--G---GKQE--DPNSW----EMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSLNS  701 (766)
Q Consensus       634 l~DFGla~~~~~~~~~--~---~~~~--~~~~~----~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~~~  701 (766)
                      |+|||+++........  .   +...  .|...    ..++.++||||+||+||||+||+.||...... ....+.....
T Consensus       170 L~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~  249 (322)
T d1vzoa_         170 LTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRIL  249 (322)
T ss_dssp             ESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH
T ss_pred             EeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcc
Confidence            9999999654322111  1   1111  11111    12456789999999999999999998653321 1111111110


Q ss_pred             ccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCC-----HHHHHH
Q 004232          702 QEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPS-----FEDILW  748 (766)
Q Consensus       702 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs-----~~ev~~  748 (766)
                      .. .     +......+    ..+.+++.+||+.||.+|||     ++|+++
T Consensus       250 ~~-~-----~~~~~~~s----~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         250 KS-E-----PPYPQEMS----ALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             HC-C-----CCCCTTSC----HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             cC-C-----CCCcccCC----HHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            00 0     11111112    34778999999999999995     677765

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=327.66  Aligned_cols=258  Identities=16%  Similarity=0.248  Sum_probs=179.8

Q ss_pred             hcCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCCh--hhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcC
Q 004232          482 TNNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSK--KYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYA  558 (766)
Q Consensus       482 ~~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~  558 (766)
                      .++|++.+.||+|+||+||+|+. .+|+.||||+++...  ....+++.+|+++|++++|||||++++++......+   
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~---   93 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLE---   93 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTT---
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccc---
Confidence            45689999999999999999985 579999999997542  344567889999999999999999999887543111   


Q ss_pred             cceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCC
Q 004232          559 VNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYG  638 (766)
Q Consensus       559 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFG  638 (766)
                      ....++++||+.+|+|.+++...    .+++.....++.||+.||+|||++   +|+||||||+|||++.++.+|++|||
T Consensus        94 ~~~~~~i~~~~~gg~L~~~~~~~----~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg  166 (348)
T d2gfsa1          94 EFNDVYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFG  166 (348)
T ss_dssp             TCCCCEEEEECCSEEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC-
T ss_pred             cCceEEEEEeecCCchhhhcccc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccc
Confidence            12346778888999999998643    389999999999999999999997   89999999999999999999999999


Q ss_pred             CCcccccccccc--c---CC-CCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHHhhhhcccC-------
Q 004232          639 LSIVSEDINSVG--G---KQ-EDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EELDSLNSQEG-------  704 (766)
Q Consensus       639 la~~~~~~~~~~--~---~~-~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~~~~~~~~~-------  704 (766)
                      ++..........  +   .. +........+.++||||+||++|||++|+.||........ ..+........       
T Consensus       167 ~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~  246 (348)
T d2gfsa1         167 LARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI  246 (348)
T ss_dssp             ---CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTC
T ss_pred             hhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhc
Confidence            986543322111  0   01 1111123456789999999999999999999874332111 11100000000       


Q ss_pred             ----ccccccc-cccCCCCH-----HHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          705 ----RQRLVDP-VVMATSSL-----ESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       705 ----~~~~~d~-~~~~~~~~-----~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                          ....... ........     ..-..+.+|+.+|++.||.+|||++|+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         247 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             CCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence                0000000 00000000     011346789999999999999999999863

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.9e-36  Score=316.87  Aligned_cols=251  Identities=12%  Similarity=0.137  Sum_probs=182.9

Q ss_pred             cCCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCCC-CCcccccceeecCCCCCCcCcc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH-PHLVCLLGHCIDGGGRDDYAVN  560 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~H-pniv~l~g~~~~~~~~~~~~~~  560 (766)
                      ++|++.+.||+|+||+||+|+. .+|+.||||.++....  ...+.+|+++++.++| +|++.+++++.+..        
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~--------   74 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGL--------   74 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETT--------
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCC--------
Confidence            4688999999999999999995 4789999998865432  2356778889999975 89999999887653        


Q ss_pred             eEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcC-----CCcEEEe
Q 004232          561 KVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNE-----HRIAKLS  635 (766)
Q Consensus       561 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~-----~~~~kl~  635 (766)
                      ..++||||+ +|+|.++++...  ..+++.....++.|++.||+|||+.   +|+||||||+|||++.     ++.+||+
T Consensus        75 ~~~~vme~~-~~~l~~~~~~~~--~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~  148 (293)
T d1csna_          75 HNVLVIDLL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVV  148 (293)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEEC
T ss_pred             ccEEEEEec-CCCHHHHHHhhc--cchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEc
Confidence            689999998 689999887543  3488999999999999999999997   8999999999999974     5689999


Q ss_pred             cCCCCcccccccccc--------cCCCCCC-------cccCCCCCCCEeehhHHHHHHhcCCCccccCccc-hHHHHhhh
Q 004232          636 DYGLSIVSEDINSVG--------GKQEDPN-------SWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF-LQEELDSL  699 (766)
Q Consensus       636 DFGla~~~~~~~~~~--------~~~~~~~-------~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~-~~~~~~~~  699 (766)
                      |||+|+...+.....        ...+++.       ....++.++|||||||++|||+||+.||...... .......+
T Consensus       149 DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i  228 (293)
T d1csna_         149 DFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERI  228 (293)
T ss_dssp             CCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHH
T ss_pred             ccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHH
Confidence            999997653321100        0001111       1133556789999999999999999999643221 11111111


Q ss_pred             hcccCccccccccccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHh
Q 004232          700 NSQEGRQRLVDPVVMATSSLESLSIVISIANKCICSESWSRPSFEDILWNLQYAAQ  755 (766)
Q Consensus       700 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~L~~~~~  755 (766)
                      .....  ...-+.+....+    .++.+++..|++.+|++||+++.+.+.|+++.+
T Consensus       229 ~~~~~--~~~~~~l~~~~p----~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~  278 (293)
T d1csna_         229 GEKKQ--STPLRELCAGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  278 (293)
T ss_dssp             HHHHH--HSCHHHHTTTSC----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HhccC--CCChHHhcCCCC----HHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence            11100  000011111122    236788899999999999999999999988765

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-36  Score=321.44  Aligned_cols=256  Identities=18%  Similarity=0.204  Sum_probs=176.8

Q ss_pred             cCCCcCCceecCCceeEEEEEec-CCceEEEEEccCC--hhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCc
Q 004232          483 NNFDMSAIMGEGSYGKLYKGRLE-NGTSVAIRCLPSS--KKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       483 ~~f~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~  559 (766)
                      ++|++.+.||+|+||+||+|+.. +|+.||||+++..  .....+++.+|+.++++++|||||++++++...+..  ...
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~--~~~   94 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTL--EEF   94 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCST--TTC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEeccccc--ccC
Confidence            56899999999999999999854 7999999999754  234456789999999999999999999998765311  112


Q ss_pred             ceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCCcEEEecCCC
Q 004232          560 NKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHRIAKLSDYGL  639 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~~~kl~DFGl  639 (766)
                      ..+|+||||+.+|.+.. +..     .+++.....++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||+
T Consensus        95 ~~~~iv~Ey~~~~l~~~-~~~-----~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQV-IQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             CEEEEEEECCSEEHHHH-HTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             ceeEEEEeccchHHHHh-hhc-----CCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhh
Confidence            47899999998765544 332     378899999999999999999997   899999999999999999999999999


Q ss_pred             Cccccccccccc---C----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccchH-HHH------------hhh
Q 004232          640 SIVSEDINSVGG---K----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQFLQ-EEL------------DSL  699 (766)
Q Consensus       640 a~~~~~~~~~~~---~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~~~-~~~------------~~~  699 (766)
                      ++..........   +    .++......++.++||||+||++|||++|+.||........ ..+            ...
T Consensus       166 ~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~  245 (355)
T d2b1pa1         166 ARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKL  245 (355)
T ss_dssp             ---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTS
T ss_pred             hhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHh
Confidence            865433221111   1    11111224567789999999999999999999864322111 000            000


Q ss_pred             -------hccc-Cc-----cccccccccCCC---CHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 004232          700 -------NSQE-GR-----QRLVDPVVMATS---SLESLSIVISIANKCICSESWSRPSFEDILWN  749 (766)
Q Consensus       700 -------~~~~-~~-----~~~~d~~~~~~~---~~~~~~~~~~l~~~C~~~~p~~RPs~~ev~~~  749 (766)
                             .... ..     ............   .......+.+|+.+|++.||++|||++||++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         246 QPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             CHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                   0000 00     000000111111   11234567899999999999999999999854

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.7e-32  Score=290.97  Aligned_cols=257  Identities=13%  Similarity=0.168  Sum_probs=174.0

Q ss_pred             CCCcCCceecCCceeEEEEEe-cCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-----------CCCcccccceeecC
Q 004232          484 NFDMSAIMGEGSYGKLYKGRL-ENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-----------HPHLVCLLGHCIDG  551 (766)
Q Consensus       484 ~f~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-----------Hpniv~l~g~~~~~  551 (766)
                      .|++.+.||+|+||+||+|+. .+|+.||||+++.... ..+.+.+|++++++++           |+|||++++++...
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            388899999999999999985 5799999999976543 3456788888888775           57899999888654


Q ss_pred             CCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEcCCC-
Q 004232          552 GGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLNEHR-  630 (766)
Q Consensus       552 ~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld~~~-  630 (766)
                      +      ....+++++++..+..............+++.....++.||+.||+|||+..  +|+||||||+|||++.++ 
T Consensus        93 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~--~IvHrDlKp~NIll~~~~~  164 (362)
T d1q8ya_          93 G------PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDS  164 (362)
T ss_dssp             E------TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEET
T ss_pred             c------ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc--CcccccCChhHeeeeccCc
Confidence            2      1356788888776665444333333445788889999999999999999842  899999999999998654 


Q ss_pred             -----cEEEecCCCCcccccccccc-cC----CCCCCcccCCCCCCCEeehhHHHHHHhcCCCccccCccc----hHHHH
Q 004232          631 -----IAKLSDYGLSIVSEDINSVG-GK----QEDPNSWEMTKLEDDVFSFGFMLLESVAGPSVAARKGQF----LQEEL  696 (766)
Q Consensus       631 -----~~kl~DFGla~~~~~~~~~~-~~----~~~~~~~~~~~~~~DV~SfGvil~ElltG~~p~~~~~~~----~~~~~  696 (766)
                           .+|++|||.|.......... ++    .++......++.++||||+||+++||++|+.||......    .....
T Consensus       165 ~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~  244 (362)
T d1q8ya_         165 PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHI  244 (362)
T ss_dssp             TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHH
T ss_pred             ccccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHH
Confidence                 49999999986543322111 11    111111234567899999999999999999998632210    00000


Q ss_pred             h---hhhc--------cc-Ccccccc---------cc----------ccCCCCHHHHHHHHHHHHHhccCCCCCCCCHHH
Q 004232          697 D---SLNS--------QE-GRQRLVD---------PV----------VMATSSLESLSIVISIANKCICSESWSRPSFED  745 (766)
Q Consensus       697 ~---~~~~--------~~-~~~~~~d---------~~----------~~~~~~~~~~~~~~~l~~~C~~~~p~~RPs~~e  745 (766)
                      .   ....        .. ......+         ..          ............+.+|+.+|++.||.+|||++|
T Consensus       245 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e  324 (362)
T d1q8ya_         245 AQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGG  324 (362)
T ss_dssp             HHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHH
T ss_pred             HHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHH
Confidence            0   0000        00 0000000         00          001122345567899999999999999999999


Q ss_pred             HHHH
Q 004232          746 ILWN  749 (766)
Q Consensus       746 v~~~  749 (766)
                      +++.
T Consensus       325 ~L~H  328 (362)
T d1q8ya_         325 LVNH  328 (362)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=6.5e-29  Score=262.19  Aligned_cols=230  Identities=27%  Similarity=0.449  Sum_probs=204.7

Q ss_pred             CCCEEecccccccc--cCCccccCCCCCCEEeccc-ccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEE
Q 004232          119 SLRVLSLVSLGIWG--SLPDKIHRLYSLEYLDLSS-NFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       119 ~L~~L~L~~n~l~~--~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      +++.|+|++|++.|  .+|++|++|++|++|||++ |+++|.+|+.|++|++|++|+|++|++.+..|..+..+++|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57889999999988  5899999999999999986 89999999999999999999999999999999999999999999


Q ss_pred             EccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCC-CEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          196 SMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSL-NVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       196 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L-~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      ++++|++.+.+|..+.+++.|+.+++++|.+++.+|. +..+..+ +.++                     +++|++++.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~---------------------~~~n~l~~~  189 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT---------------------ISRNRLTGK  189 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE---------------------CCSSEEEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccc---------------------ccccccccc
Confidence            9999999999999999999999999999999988775 5555544 4444                     455666667


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCC
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNE  353 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~  353 (766)
                      .|..++.+..+ .+++++|.+.+.+|..+..+++|+.+++++|.+++.+| .+..+++|+.|||++|+++|.+|..++++
T Consensus       190 ~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         190 IPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             CCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCC
Confidence            78888877655 79999999999999999999999999999999998766 57888999999999999999999999999


Q ss_pred             CCCceeecCCCcCCCCcC
Q 004232          354 SDKRVVKFRGNCLSSNVQ  371 (766)
Q Consensus       354 ~~l~~l~l~~N~l~~~~~  371 (766)
                      ++|+.|++++|.++|.+|
T Consensus       268 ~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             TTCCEEECCSSEEEEECC
T ss_pred             CCCCEEECcCCcccccCC
Confidence            999999999999998654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.2e-24  Score=226.18  Aligned_cols=246  Identities=20%  Similarity=0.256  Sum_probs=214.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..+  ...|..|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence            579999999999987777789999999999999999998888999999999999999999985 55443  468999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCC---CCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLP---DLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~  274 (766)
                      .+|.+.+..+..+.....+..++...|.......   .+..+++|+.+++++|.++......+.+++.+++++|.+++..
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCC
Confidence            9999998777778888899999999886643222   3678899999999999998765567789999999999999999


Q ss_pred             cccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCC-----
Q 004232          275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSC-----  349 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~-----  349 (766)
                      +..|..++.++.|++++|.+++.++..+.++++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|+..-...     
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~  266 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  266 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcc
Confidence            999999999999999999999999999999999999999999998 67889999999999999999998543323     


Q ss_pred             -CCCCCCCceeecCCCcCC
Q 004232          350 -LSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       350 -~~~~~~l~~l~l~~N~l~  367 (766)
                       ......++.+++.+|++.
T Consensus       267 ~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         267 YNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCTTSCCCSEEECCSSSSC
T ss_pred             hhcccCCCCEEECCCCcCc
Confidence             345677899999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=226.48  Aligned_cols=247  Identities=22%  Similarity=0.225  Sum_probs=201.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEcc-CCcCCCCCCcccCCCCCCCEEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILD-DNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +++++|+|++|+|++..|..|.++++|++||+++|++.+..+..+.++..+..+... .|.++...|..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999988777889999999999999999998888889999999998765 6677777788999999999999


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC---CCCcEEEccCCcCcc
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLP---RGLVMAFLSNNSFSG  272 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~l~ls~N~l~~  272 (766)
                      +++|.+....+..+..+++|+.+++++|++++.++. +..+++|+.|++++|++++..+...   .+|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            999999887788889999999999999999977664 7788999999999999987666543   568888889999888


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCC
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSN  352 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~  352 (766)
                      ..|..|..+++|++||+++|++.+.++..|..+++|++|+|++|.+.+.-+.. .-...++.+....+++++..|..+. 
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~-  269 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA-  269 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT-
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc-
Confidence            88888888899999999999999888888888888999999999887643211 1112345566666777777776654 


Q ss_pred             CCCCceeecCCCcCCC
Q 004232          353 ESDKRVVKFRGNCLSS  368 (766)
Q Consensus       353 ~~~l~~l~l~~N~l~~  368 (766)
                        .....++..+.++|
T Consensus       270 --g~~l~~l~~~~l~g  283 (284)
T d1ozna_         270 --GRDLKRLAANDLQG  283 (284)
T ss_dssp             --TCBGGGSCGGGSCC
T ss_pred             --CCccccCCHHHCCC
Confidence              34555666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-23  Score=215.32  Aligned_cols=221  Identities=20%  Similarity=0.246  Sum_probs=175.5

Q ss_pred             ecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc-CccC
Q 004232          124 SLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR-NNKL  202 (766)
Q Consensus       124 ~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-~N~l  202 (766)
                      +.++++++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|++++|.+....+..+.+++.+..+... .|.+
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            44455553 5565443  568999999999987777789999999999999999998888888899999998765 5667


Q ss_pred             CCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCC
Q 004232          203 AGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQL  281 (766)
Q Consensus       203 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l  281 (766)
                      +...|..|.++++|++|++++|.+....+. +....+|+.+++++|++++                     ..+..|..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~---------------------i~~~~f~~~  152 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------------LPDDTFRDL  152 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTTTTC
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc---------------------cChhHhccc
Confidence            766678889999999999999988765543 5667778888877776654                     344567777


Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeec
Q 004232          282 NQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKF  361 (766)
Q Consensus       282 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l  361 (766)
                      ++|+.|++++|+++++++..|.++++|+.+++++|++++..|..|..+++|+.||+++|++++..|..+.++.+|+.+++
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            78888888888888888888888888888888888888877888888888888888888888777777788888888888


Q ss_pred             CCCcCCC
Q 004232          362 RGNCLSS  368 (766)
Q Consensus       362 ~~N~l~~  368 (766)
                      ++|.+.+
T Consensus       233 ~~N~l~C  239 (284)
T d1ozna_         233 NDNPWVC  239 (284)
T ss_dssp             CSSCEEC
T ss_pred             cCCCCCC
Confidence            8887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=207.31  Aligned_cols=199  Identities=23%  Similarity=0.234  Sum_probs=105.9

Q ss_pred             CCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEc
Q 004232          142 YSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDL  221 (766)
Q Consensus       142 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  221 (766)
                      ..+...|.++++|+ .+|+.+.  ++|++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .++.+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            33444445555544 2444332  345555555555554444455555555555555555542 22 2345555666666


Q ss_pred             cCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccc
Q 004232          222 SKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPA  301 (766)
Q Consensus       222 s~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~  301 (766)
                      ++|++++..+.+..+++|++|++++|.+.+                     ..+..+..+.+++.|++++|.++.+++..
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTS---------------------LPLGALRGLGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCC---------------------CCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccccccccccccccccccccccccccce---------------------eeccccccccccccccccccccceecccc
Confidence            666655554455555566666555554432                     22233444555555555555555555555


Q ss_pred             cCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCC
Q 004232          302 IFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       302 ~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                      +..+++|+.|++++|++++..+..+..+.+|+.|||++|+|+ .+|..+..++.|+.+++++|.+.
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            555555555556555555555555555556666666666655 55555555556666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=207.23  Aligned_cols=203  Identities=24%  Similarity=0.307  Sum_probs=157.4

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      ..+.+.+...+.++++++. +|+.+.  ++|++|||++|+|++..+..|.++++|++|+|++|+|+. +| .++.+++|+
T Consensus         6 ~~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             EcccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            3455666777888888874 676553  578999999999987667788999999999999999874 44 367899999


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~  272 (766)
                      +|+|++|++++ +|..+..+++|+.|++++|.+.+..+. +..+.++++|++++|.+++                     
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~---------------------  138 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------------------  138 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccce---------------------
Confidence            99999999884 577888899999999999998875554 6677888888887776654                     


Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          273 EIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       273 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                      ..+..+..+++|+.|++++|++++.++..|..+++|++|+|++|+|+ .+|+.+..+.+|+.|+|++|.+..
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            33445566777778888888888777777777788888888888877 677777777778888888887653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=3.8e-22  Score=215.50  Aligned_cols=188  Identities=26%  Similarity=0.386  Sum_probs=114.2

Q ss_pred             CCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEE
Q 004232          164 TMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLN  243 (766)
Q Consensus       164 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~  243 (766)
                      .+++++.|++++|.+++..|  +..+++|+.|++++|+++. + +.+..+++|+.|++++|.+++.. .+..+++|++|+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC-cccccccCCEee
Confidence            34445555555555554333  2344556666666666553 2 34555666666666666665433 355566666666


Q ss_pred             CCCCCCCCCCCC-CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccC
Q 004232          244 LSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSL  322 (766)
Q Consensus       244 ls~N~l~~~~p~-~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~  322 (766)
                      +++|++++..+- -...+..+.++.|.+++  ...+..+++++.|++++|++++.++  +..+++|+.|+|++|++++ +
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l  344 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-V  344 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C
T ss_pred             ccCcccCCCCcccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-C
Confidence            666666543321 12345566666666664  2346667777777777777777643  6667777777777777763 3


Q ss_pred             CccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCC
Q 004232          323 PKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGN  364 (766)
Q Consensus       323 p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N  364 (766)
                      | .+..+++|+.|++++|++++..|  +.++++|+.|++++|
T Consensus       345 ~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3 46667777777777777776554  666777777777766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.8e-22  Score=208.95  Aligned_cols=261  Identities=22%  Similarity=0.204  Sum_probs=209.4

Q ss_pred             cceEecCCCEEEEEeCCCCCCCCCCCCccccccccCCCcccCCccc-ccccCCCCCCEEecccccccccCCccccCCCCC
Q 004232           66 VNITCQDNFITELKIIGDKPSNVGNFDGFASANASLSENFSIDSFV-TTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSL  144 (766)
Q Consensus        66 ~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L  144 (766)
                      .+|.|.+.+++++  +...+..   +.     ...+++|.+ ..+| ..|.++++|++|++++|.+....|..|.++++|
T Consensus        13 ~~~~C~~~~L~~l--P~~l~~~---l~-----~L~Ls~N~i-~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_          13 RVVQCSDLGLEKV--PKDLPPD---TA-----LLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             TEEECTTSCCCSC--CCSCCTT---CC-----EEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEecCCCCCcc--CCCCCCC---CC-----EEECcCCcC-CCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            4689976555533  2221221   11     224666654 4455 479999999999999999999889999999999


Q ss_pred             CEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCC--CCCCccccCCCCCCEEEcc
Q 004232          145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLA--GPFPSSIQRISTLSDLDLS  222 (766)
Q Consensus       145 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls  222 (766)
                      ++|++++|+++ .+|..+  ...|..|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.++++
T Consensus        82 ~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             CEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            99999999997 466544  358999999999999888888888999999999988643  4556678899999999999


Q ss_pred             CCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCc
Q 004232          223 KNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKL---PRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP  299 (766)
Q Consensus       223 ~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~---~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~  299 (766)
                      +|.++.....  .+++|+.|++++|..++..+..   ...+..+++++|.+++..+..|..+++|++|+|++|+|+.++ 
T Consensus       159 ~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-  235 (305)
T d1xkua_         159 DTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-  235 (305)
T ss_dssp             SSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-
T ss_pred             cCCccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc-
Confidence            9999854332  3689999999999998776653   246789999999999998999999999999999999999875 


Q ss_pred             cccCCCCCCCeEEeecCcCcccCCcc------CCCCCCccEEeCcCCccc
Q 004232          300 PAIFSLPNISDLNLASNKFSGSLPKN------LNCGGKLVFFDISNNKLT  343 (766)
Q Consensus       300 ~~~~~l~~L~~L~L~~N~l~g~~p~~------~~~~~~L~~L~ls~N~l~  343 (766)
                      ..+..+++|++|+|++|+|+..-...      .....+|+.|+|++|.++
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            58999999999999999998532223      345678999999999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=3.4e-21  Score=207.95  Aligned_cols=242  Identities=22%  Similarity=0.255  Sum_probs=192.7

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCC----------
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI----------  182 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~----------  182 (766)
                      .+..|++|++|+|++|+|++..  .|++|++|++|+|++|++.+. + .++++++|+.|++++|.+++..          
T Consensus        61 gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~  136 (384)
T d2omza2          61 GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNR  136 (384)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             ccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc-c-cccccccccccccccccccccccccccccccc
Confidence            3667888888888888887643  288888888888888888753 3 3788888888888887765321          


Q ss_pred             -----------------------------------------------------CcccCCCCCCCEEEccCccCCCCCCcc
Q 004232          183 -----------------------------------------------------PNWFDSLPSLTFLSMRNNKLAGPFPSS  209 (766)
Q Consensus       183 -----------------------------------------------------p~~~~~l~~L~~L~L~~N~l~~~~p~~  209 (766)
                                                                           +..+..+++++.|++++|.+++..|  
T Consensus       137 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--  214 (384)
T d2omza2         137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--  214 (384)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--
Confidence                                                                 1234567889999999999887654  


Q ss_pred             ccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCcEEEccCCcCccCCcccccCCCCCCEEE
Q 004232          210 IQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLD  288 (766)
Q Consensus       210 ~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~  288 (766)
                      +..+++|+.|++++|.++. ++.+..+++|+.|++++|.+++..+- ....|+.+++++|++++..+  +..+..++.++
T Consensus       215 ~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~  291 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLE  291 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc--ccccccccccc
Confidence            4567889999999999885 56778889999999999998875442 24578999999999986543  77888999999


Q ss_pred             ccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          289 MSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       289 ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      ++.|++++..  .+..+++++.|++++|++++..  .+..+++|+.|++++|++++ +| .+.++++|+.|++++|.+++
T Consensus       292 ~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         292 LNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             cccccccccc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence            9999998854  4778899999999999999753  37788999999999999985 44 58899999999999999885


Q ss_pred             C
Q 004232          369 N  369 (766)
Q Consensus       369 ~  369 (766)
                      -
T Consensus       366 l  366 (384)
T d2omza2         366 L  366 (384)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.83  E-value=5.3e-21  Score=185.64  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             CcCCceecCCceeEEEEEecCCceEEEEEccCCh------------------hhhHHHHHHHHHHHHhCCCCCcccccce
Q 004232          486 DMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSK------------------KYTVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       486 ~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~------------------~~~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      .+.+.||+|+||+||+|+..+|+.||||.++...                  ........+|...+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            3568899999999999998889999999865321                  0112345668889999999999987754


Q ss_pred             eecCCCCCCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCceEEc
Q 004232          548 CIDGGGRDDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTGVIPGFFNNRVKTNNILLN  627 (766)
Q Consensus       548 ~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrdlk~~NILld  627 (766)
                      .            ..+++|||++++.+.+.          +......++.++++|++|||+.   +|+||||||+|||++
T Consensus        83 ~------------~~~lvme~~~~~~~~~l----------~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~  137 (191)
T d1zara2          83 E------------GNAVLMELIDAKELYRV----------RVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS  137 (191)
T ss_dssp             E------------TTEEEEECCCCEEGGGC----------CCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred             c------------CCEEEEEeeccccccch----------hhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeee
Confidence            2            12799999998766542          2223456889999999999997   899999999999999


Q ss_pred             CCCcEEEecCCCCcccc
Q 004232          628 EHRIAKLSDYGLSIVSE  644 (766)
Q Consensus       628 ~~~~~kl~DFGla~~~~  644 (766)
                      ++ .++++|||.|....
T Consensus       138 ~~-~~~liDFG~a~~~~  153 (191)
T d1zara2         138 EE-GIWIIDFPQSVEVG  153 (191)
T ss_dssp             TT-EEEECCCTTCEETT
T ss_pred             CC-CEEEEECCCcccCC
Confidence            65 58999999986543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7.8e-19  Score=175.09  Aligned_cols=202  Identities=21%  Similarity=0.300  Sum_probs=104.0

Q ss_pred             EEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCcc
Q 004232          122 VLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNK  201 (766)
Q Consensus       122 ~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  201 (766)
                      .++++.+.+++.+  .+..|.+|++|++++|.++. ++ .+..+++|++|++++|++++..|  +.++++|++|++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3444555554433  24555666666666666653 32 46666666666666666654332  5666666666666666


Q ss_pred             CCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCcEEEccCCcCccCCcccccC
Q 004232          202 LAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQ  280 (766)
Q Consensus       202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~l~ls~N~l~~~~p~~~~~  280 (766)
                      ++. ++ .+..+++|+.+++++|...+. +.+...+.+..+.++.+.+....+- ...+++.+.+++|.++...  .++.
T Consensus        97 ~~~-i~-~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~  171 (227)
T d1h6ua2          97 LKN-VS-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLAN  171 (227)
T ss_dssp             CSC-CG-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             ccc-cc-ccccccccccccccccccccc-chhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcc
Confidence            552 22 355666666666666655532 2344455556666555554332110 1122333333334333211  2455


Q ss_pred             CCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCc
Q 004232          281 LNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS  338 (766)
Q Consensus       281 l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls  338 (766)
                      +++|+.|+|++|+++++++  +.++++|++|+|++|++++ +| .+..+++|+.|+++
T Consensus       172 l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEE
T ss_pred             cccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEee
Confidence            5555555555555555332  4555555555555555553 22 14455555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-18  Score=173.13  Aligned_cols=213  Identities=17%  Similarity=0.124  Sum_probs=111.0

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCC-CcccCCCCCCCEEEccC
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTI-PNWFDSLPSLTFLSMRN  199 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~  199 (766)
                      ++++.++++++ .+|+.+.  +++++|||++|+|+...+..|.++++|++|+|++|.+...+ +..|.+++++++|.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455555554 4454332  35666666666665444445666666666666666665543 33466666666666543


Q ss_pred             -ccCCCCCCccccCCCCCCEEEccCCccCCCCCC--CCCCCCCCEEECCCCCCCCCCCC----CCCCCcEEEccCCcCcc
Q 004232          200 -NKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD--LSSLGSLNVLNLSDNKLDSNLPK----LPRGLVMAFLSNNSFSG  272 (766)
Q Consensus       200 -N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~l~ls~N~l~~  272 (766)
                       |++....+..|.++++|+.|++++|.+....+.  +..+..+..+..+++.+....+.    .+..+..+++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             556555566666667777777777666543221  23334444444455444332211    12334455555555553


Q ss_pred             CCcccccCCCCCCE-EEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeC
Q 004232          273 EIPKQYGQLNQLQQ-LDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDI  337 (766)
Q Consensus       273 ~~p~~~~~l~~L~~-L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~l  337 (766)
                      ..+..| ...++.. +++++|+++.+++..|.++++|+.|+|++|+|+...+..+..+..|+.+++
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            333322 2233333 344555666655555566666666666666665332333444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.2e-18  Score=167.48  Aligned_cols=180  Identities=22%  Similarity=0.332  Sum_probs=110.8

Q ss_pred             EecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccC
Q 004232          123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL  202 (766)
Q Consensus       123 L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  202 (766)
                      .++..+.+.+.++.  ..|.+|++|++++|.+.. ++ .+..+++|++|+|++|++++. + .++++++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccc
Confidence            34555555554442  345677777777777754 22 366777777777777777753 3 256777777777777777


Q ss_pred             CCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCC
Q 004232          203 AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLN  282 (766)
Q Consensus       203 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~  282 (766)
                      ++ +| .+..+++|+.|++++|.+. .++.+..+++|+.+++++|.+++                       +..+..++
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~-----------------------~~~~~~l~  156 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITD-----------------------ITVLSRLT  156 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-----------------------CGGGGGCT
T ss_pred             cc-cc-ccccccccccccccccccc-ccccccccccccccccccccccc-----------------------cccccccc
Confidence            64 33 4667777777777777765 34556666777777776666542                       12344455


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCc
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDIS  338 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls  338 (766)
                      +|+.+++++|++++.++  +.++++|+.|+|++|+++ .+| .+..+++|+.|+|+
T Consensus       157 ~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccc--ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            66666666666665432  556666666666666665 233 35555666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=6.7e-18  Score=168.20  Aligned_cols=207  Identities=20%  Similarity=0.304  Sum_probs=171.8

Q ss_pred             CCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEE
Q 004232          141 LYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD  220 (766)
Q Consensus       141 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  220 (766)
                      |.++..++++.+++++.+  .+..|.+|+.|++++|.++. ++ .+..+++|++|++++|++++..|  +..+++|++|+
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~   91 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE   91 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccc
Confidence            444455678888887643  46778999999999999985 44 58999999999999999986543  89999999999


Q ss_pred             ccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCc
Q 004232          221 LSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPK-LPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPP  299 (766)
Q Consensus       221 Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~  299 (766)
                      +++|.++ .++.+..+++|+.+++++|...+..+- ....+..+.++++.+....  .+..+++|+.|++++|.++...+
T Consensus        92 ~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~  168 (227)
T d1h6ua2          92 LSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP  168 (227)
T ss_dssp             CCSCCCS-CCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccc-ccccccccccccccccccccccccchhccccchhhhhchhhhhchhh--hhccccccccccccccccccchh
Confidence            9999987 567789999999999999988765432 3456788899999887543  47788999999999999987654


Q ss_pred             cccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecC
Q 004232          300 PAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFR  362 (766)
Q Consensus       300 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~  362 (766)
                        +.++++|+.|+|++|++++ +|. +..+++|+.|++++|+++...|  +.++++|+.|+++
T Consensus       169 --l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 --LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             --GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             --hcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence              8899999999999999985 443 7888999999999999996443  7889999999886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.6e-18  Score=167.92  Aligned_cols=113  Identities=23%  Similarity=0.269  Sum_probs=91.5

Q ss_pred             CCCCEEecccccccccC-CccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          118 TSLRVLSLVSLGIWGSL-PDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~-p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      +++++|+|++|.|++.+ +..|.++++|+.|+|++|++.+..+..+..+++|++|+|++|+++...|.+|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            46788888888887644 55678888888888888888888888888888888888888888887788888888888888


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccCCCC
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSL  230 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  230 (766)
                      |++|+|++..|..|..+++|++|+|++|.+....
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCccccccCHHHhcCCccccccccccccccccc
Confidence            8888888777777888888888888888776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=3.8e-16  Score=165.37  Aligned_cols=228  Identities=23%  Similarity=0.289  Sum_probs=136.9

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      ++|++|+|++|+|+ .+|+.   +.+|+.|++++|+++ .++. +  .++|++|++++|.+. .+|. ++.+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            45677777777765 45554   345666677776665 2332 1  134667777777666 3443 456677777777


Q ss_pred             cCccCCCCC------------------CccccCCCCCCEEEccCCccCCC-------------------CCCCCCCCCCC
Q 004232          198 RNNKLAGPF------------------PSSIQRISTLSDLDLSKNAISGS-------------------LPDLSSLGSLN  240 (766)
Q Consensus       198 ~~N~l~~~~------------------p~~~~~l~~L~~L~Ls~N~l~~~-------------------~p~~~~l~~L~  240 (766)
                      ++|.+....                  +..+..++.++.|++++|.+...                   ++.+..++.|+
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            666654321                  22345566677777777765432                   23355677888


Q ss_pred             EEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCC----------------ccccCC
Q 004232          241 VLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMP----------------PPAIFS  304 (766)
Q Consensus       241 ~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~----------------~~~~~~  304 (766)
                      .+++++|.... ++.....+..+.+.+|.+.... .   ...++...++..|.+.+..                +.....
T Consensus       208 ~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  282 (353)
T d1jl5a_         208 TIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL  282 (353)
T ss_dssp             EEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC
T ss_pred             ccccccccccc-cccccccccccccccccccccc-c---ccccccccccccccccccccccchhcccccccCcccccccc
Confidence            88888887654 4455555666666666665321 1   1223333333333222111                111223


Q ss_pred             CCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          305 LPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       305 l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                      +++|++|+|++|+|+ .+|..   +++|+.|++++|+|+ .+|..   +.+|+.|++++|.++.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence            578899999999888 56754   467888899999888 56754   3468888899888874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5e-18  Score=164.45  Aligned_cols=129  Identities=24%  Similarity=0.273  Sum_probs=114.4

Q ss_pred             CCEEecccccccccCCccccCCCCCCEEecccccCccCC-CccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 004232          120 LRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV-PPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMR  198 (766)
Q Consensus       120 L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  198 (766)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|++|+|++|.+....+..|..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            357888899886 5676553  68999999999998655 5677899999999999999999999999999999999999


Q ss_pred             CccCCCCCCccccCCCCCCEEEccCCccCCCCCC-CCCCCCCCEEECCCCCCCC
Q 004232          199 NNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-LSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~ls~N~l~~  251 (766)
                      +|+|+...|..|.++++|++|+|++|+|++..|. |..+++|++|+|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999988888999999999999999999987775 7899999999999998865

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=166.51  Aligned_cols=199  Identities=15%  Similarity=0.119  Sum_probs=157.8

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCC-CccCCCCCCCCEEEcc-CCcCCCCCCcccCCCCCCCEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSV-PPKISTMVKLQTLILD-DNFFNNTIPNWFDSLPSLTFL  195 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L  195 (766)
                      +++++|+|++|.|....+..|.++++|++|+|++|.+...+ +..|.+++++++|.+. .|.+....+..|.++++|++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47899999999998777778999999999999999987655 4568899999999876 478888888899999999999


Q ss_pred             EccCccCCCCCCc-cccCCCCCCEEEccCCccCCCCC-CCCCCC-CCCEEECCCCCCCCCCCCCCC--C-CcEEEccCCc
Q 004232          196 SMRNNKLAGPFPS-SIQRISTLSDLDLSKNAISGSLP-DLSSLG-SLNVLNLSDNKLDSNLPKLPR--G-LVMAFLSNNS  269 (766)
Q Consensus       196 ~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p-~~~~l~-~L~~L~ls~N~l~~~~p~~~~--~-l~~l~ls~N~  269 (766)
                      ++++|++....+. .+..+..|..+..+++.+....+ .+..++ .+..|++++|+++...+....  . ...+++++|+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            9999999754332 33455666666777777765433 355554 788999999999865554432  2 3345678889


Q ss_pred             CccCCcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeecC
Q 004232          270 FSGEIPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLASN  316 (766)
Q Consensus       270 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N  316 (766)
                      ++...+..|..+++|++|+|++|+++.+++..|.++++|+.+++.+.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            98655667999999999999999999999888988888888877553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.5e-17  Score=159.37  Aligned_cols=167  Identities=27%  Similarity=0.347  Sum_probs=140.0

Q ss_pred             cCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCE
Q 004232          115 ARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTF  194 (766)
Q Consensus       115 ~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  194 (766)
                      ..|.+|+.|++++|.+....  .+..+++|++|+|++|.+++ ++ .+.++++|++|++++|++++ +| .+.++++|+.
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccc
Confidence            35778999999999997643  38899999999999999986 44 37899999999999999985 44 5889999999


Q ss_pred             EEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCC
Q 004232          195 LSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEI  274 (766)
Q Consensus       195 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~  274 (766)
                      |++++|.+..  ...+..++.|+.+++++|.+++ ++.+..+++|+++++++|++++                      +
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~----------------------i  171 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISD----------------------I  171 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC----------------------C
T ss_pred             cccccccccc--cccccccccccccccccccccc-cccccccccccccccccccccc----------------------c
Confidence            9999999863  3468899999999999999985 4456778899999888887653                      2


Q ss_pred             cccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeEEeec
Q 004232          275 PKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDLNLAS  315 (766)
Q Consensus       275 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~  315 (766)
                      + .++++++|+.|+|++|+++.++  .+.++++|++|+|++
T Consensus       172 ~-~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V-PLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             c-cccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            2 2778899999999999998763  588999999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.8e-17  Score=159.14  Aligned_cols=163  Identities=25%  Similarity=0.375  Sum_probs=86.2

Q ss_pred             EecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccC
Q 004232          123 LSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKL  202 (766)
Q Consensus       123 L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  202 (766)
                      +.++.+.+++.++  ...+.+|++|++++|.+.. + +.+..+++|++|+|++|++++..|  ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3444555544432  2345566666666666642 2 235556666666666666654322  56666666666666665


Q ss_pred             CCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCC
Q 004232          203 AGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLN  282 (766)
Q Consensus       203 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~  282 (766)
                      .. +| .+..++.|+.|++++|.+.. ++.+..+++|+.|++++|++..                      + ..+..++
T Consensus        97 ~~-~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~----------------------~-~~l~~~~  150 (199)
T d2omxa2          97 AD-IT-PLANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISD----------------------I-SALSGLT  150 (199)
T ss_dssp             CC-CG-GGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC----------------------C-GGGTTCT
T ss_pred             cc-cc-cccccccccccccccccccc-ccccchhhhhHHhhhhhhhhcc----------------------c-ccccccc
Confidence            43 22 25566666666666665553 2335555566666655554431                      1 1234445


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCeEEeecCcCc
Q 004232          283 QLQQLDMSFNALRGMPPPAIFSLPNISDLNLASNKFS  319 (766)
Q Consensus       283 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  319 (766)
                      +|+.|++++|++++.++  +.++++|+.|++++|+++
T Consensus       151 ~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         151 SLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccCCcc--ccCCCCCCEEECCCCCCC
Confidence            55555555555554432  445555555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=6.9e-17  Score=157.22  Aligned_cols=164  Identities=28%  Similarity=0.451  Sum_probs=137.1

Q ss_pred             ccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCC
Q 004232          114 LARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLT  193 (766)
Q Consensus       114 l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  193 (766)
                      ...+.+|+.|++++|++.. ++ .+..+++|++|+|++|++++. ++ +.++++|++|++++|.+.. +| .+.++++|+
T Consensus        36 ~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc-cc-ccCCccccccccccccccc-cc-ccccccccc
Confidence            3467899999999999965 43 488999999999999999864 33 9999999999999999874 34 488999999


Q ss_pred             EEEccCccCCCCCCccccCCCCCCEEEccCCccCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccC
Q 004232          194 FLSMRNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGE  273 (766)
Q Consensus       194 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~  273 (766)
                      .|++++|.+...  ..+..+++|+.|++++|++.. ++.+..+++|+.|++++|++++                      
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~----------------------  164 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTD----------------------  164 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC----------------------
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccC----------------------
Confidence            999999998753  458889999999999999974 5678889999999998887753                      


Q ss_pred             CcccccCCCCCCEEEccCCcCCCCCccccCCCCCCCeE
Q 004232          274 IPKQYGQLNQLQQLDMSFNALRGMPPPAIFSLPNISDL  311 (766)
Q Consensus       274 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L  311 (766)
                      ++ .++++++|+.|++++|+++.++  .+..+++|+.|
T Consensus       165 l~-~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK-PLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            22 3778899999999999998864  47788888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=2.2e-15  Score=159.37  Aligned_cols=230  Identities=27%  Similarity=0.342  Sum_probs=150.7

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSM  197 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  197 (766)
                      .+|++|+|++|+++ .+|+.   +++|++|+|++|+|+ .+|..+   .+|+.|++++|+++. ++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhhh---ccccccccc
Confidence            46899999999996 57864   578999999999998 678654   578999999999873 4432   146999999


Q ss_pred             cCccCCCCCCccccCCCCCCEEEccCCccCCCCCC-------------------CCCCCCCCEEECCCCCCCCCCCCCCC
Q 004232          198 RNNKLAGPFPSSIQRISTLSDLDLSKNAISGSLPD-------------------LSSLGSLNVLNLSDNKLDSNLPKLPR  258 (766)
Q Consensus       198 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------------------~~~l~~L~~L~ls~N~l~~~~p~~~~  258 (766)
                      ++|.++ .+|. ++.+++|+.|++++|.++.....                   +..++.++.|++++|.+... +....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~-~~~~~  182 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-PDLPL  182 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CCCCT
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccc-ccccc
Confidence            999998 4664 68899999999999988754331                   34566778888888776542 22222


Q ss_pred             CCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCCCccc----------------cCCCCCCCeEEeecCcCcc--
Q 004232          259 GLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGMPPPA----------------IFSLPNISDLNLASNKFSG--  320 (766)
Q Consensus       259 ~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~----------------~~~l~~L~~L~L~~N~l~g--  320 (766)
                      ....+..+++.+. .+| .+..++.|+.+++++|.....+...                .....++..+++..|.+.+  
T Consensus       183 ~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  260 (353)
T d1jl5a_         183 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS  260 (353)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEES
T ss_pred             ccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2333334333332 222 2345556666666665554432100                0011233344444433322  


Q ss_pred             --------------cCCccCCCCCCccEEeCcCCccccCCCCCCCCCCCCceeecCCCcCCC
Q 004232          321 --------------SLPKNLNCGGKLVFFDISNNKLTGGLPSCLSNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       321 --------------~~p~~~~~~~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~l~~N~l~~  368 (766)
                                    .++.....+++|+.|++++|+++ .+|..   +++|+.|++++|.++.
T Consensus       261 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~  318 (353)
T d1jl5a_         261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE  318 (353)
T ss_dssp             CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC
T ss_pred             cccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCc
Confidence                          11111223468999999999998 67765   4578899999999884

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.8e-14  Score=126.87  Aligned_cols=104  Identities=29%  Similarity=0.366  Sum_probs=83.9

Q ss_pred             CEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCc
Q 004232          121 RVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNN  200 (766)
Q Consensus       121 ~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  200 (766)
                      |+|+|++|+++ .+| .+.++++|++|||++|.|+ .+|+.++.+++|+.|++++|.++. +| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57889999886 444 4888899999999999987 577788889999999999998885 44 4888899999999999


Q ss_pred             cCCCCC-CccccCCCCCCEEEccCCccCCC
Q 004232          201 KLAGPF-PSSIQRISTLSDLDLSKNAISGS  229 (766)
Q Consensus       201 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~  229 (766)
                      +++... ...+..+++|+.|++++|.++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            887543 25678888899999998888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.8e-15  Score=137.13  Aligned_cols=128  Identities=20%  Similarity=0.200  Sum_probs=105.6

Q ss_pred             cccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCC
Q 004232          113 TLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSL  192 (766)
Q Consensus       113 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  192 (766)
                      .+.++.+|+.|+|++|+|+.. |..+..+++|++|||++|.|+. ++ .|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            467888999999999999654 7777889999999999999974 43 58899999999999999997767777889999


Q ss_pred             CEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCC----CCCCCCCCCEEE
Q 004232          193 TFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLP----DLSSLGSLNVLN  243 (766)
Q Consensus       193 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~l~~L~~L~  243 (766)
                      ++|++++|+++.... ..+..+++|++|++++|.++....    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999999974321 467889999999999999875432    156788888886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.1e-13  Score=122.82  Aligned_cols=102  Identities=25%  Similarity=0.313  Sum_probs=87.8

Q ss_pred             CEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEEccCC
Q 004232          145 EYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLDLSKN  224 (766)
Q Consensus       145 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  224 (766)
                      |+|||++|+++ .++ .+..+++|++|++++|+++ .+|+.|+.+++|++|++++|++++ +| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            68999999997 455 4899999999999999998 578889999999999999999985 44 5899999999999999


Q ss_pred             ccCCCC--CCCCCCCCCCEEECCCCCCCC
Q 004232          225 AISGSL--PDLSSLGSLNVLNLSDNKLDS  251 (766)
Q Consensus       225 ~l~~~~--p~~~~l~~L~~L~ls~N~l~~  251 (766)
                      +++...  ..+..+++|++|++++|.++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998643  247888999999999998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.5e-14  Score=132.62  Aligned_cols=132  Identities=20%  Similarity=0.161  Sum_probs=105.5

Q ss_pred             cccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCC
Q 004232          137 KIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTL  216 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  216 (766)
                      .|.++.+|++|||++|+|+ .+|..+..+++|+.|+|++|.++. ++ .|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4778889999999999997 467777889999999999999985 43 58899999999999999997666667889999


Q ss_pred             CEEEccCCccCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEc
Q 004232          217 SDLDLSKNAISGSL--PDLSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDM  289 (766)
Q Consensus       217 ~~L~Ls~N~l~~~~--p~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~l  289 (766)
                      +.|+|++|+++...  ..+..+++|++|++++|.++..                  .+.-+..+..+++|++||-
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~------------------~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK------------------KHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------------TTHHHHHHHHCTTCSEETT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccc------------------cchHHHHHHHCCCcCeeCC
Confidence            99999999997532  3477889999999998877521                  0111234667778887763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.6e-16  Score=168.52  Aligned_cols=133  Identities=16%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             CCCCCCEEECCCCCCCCCCCC-------CCCCCcEEEccCCcCccCCcccc-----cCCCCCCEEEccCCcCCCCCccc-
Q 004232          235 SLGSLNVLNLSDNKLDSNLPK-------LPRGLVMAFLSNNSFSGEIPKQY-----GQLNQLQQLDMSFNALRGMPPPA-  301 (766)
Q Consensus       235 ~l~~L~~L~ls~N~l~~~~p~-------~~~~l~~l~ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~~~~~~-  301 (766)
                      ....++.+++++|.+......       ....+..+++++|.++......+     .....|+.+++++|.++...... 
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            345677788877766532110       12456777888887764322211     23456788888888776543222 


Q ss_pred             ---cCCCCCCCeEEeecCcCccc----CCccCC-CCCCccEEeCcCCccccC----CCCCCCCCCCCceeecCCCcCC
Q 004232          302 ---IFSLPNISDLNLASNKFSGS----LPKNLN-CGGKLVFFDISNNKLTGG----LPSCLSNESDKRVVKFRGNCLS  367 (766)
Q Consensus       302 ---~~~l~~L~~L~L~~N~l~g~----~p~~~~-~~~~L~~L~ls~N~l~g~----~p~~~~~~~~l~~l~l~~N~l~  367 (766)
                         +...++|++|+|++|+++..    +++.+. ..+.|+.|+|++|+++..    ++..+..+++|+.|++++|+++
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence               23445788888888887542    233332 345688888888887642    3334455677888888888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.2e-14  Score=147.30  Aligned_cols=65  Identities=17%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             ccccCCCCCCEEEccCC-cCCCCCccccCCCCCCCeEEeec-CcCcccCCccCCCCCCccEEeCcCC
Q 004232          276 KQYGQLNQLQQLDMSFN-ALRGMPPPAIFSLPNISDLNLAS-NKFSGSLPKNLNCGGKLVFFDISNN  340 (766)
Q Consensus       276 ~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~~~~L~~L~ls~N  340 (766)
                      ..+..+++|++|++++| .+++.....+..+++|++|+|++ +.++......+..+++|+.|+++++
T Consensus       169 ~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         169 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            33456777788888774 46655556677777788888877 4566555555666777777877765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.4e-14  Score=143.84  Aligned_cols=214  Identities=18%  Similarity=0.154  Sum_probs=119.0

Q ss_pred             CCCCCCEEeccccccccc-CCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCC-cCCCC-CCcccCCCCCC
Q 004232          116 RLTSLRVLSLVSLGIWGS-LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN-FFNNT-IPNWFDSLPSL  192 (766)
Q Consensus       116 ~l~~L~~L~L~~n~l~~~-~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L  192 (766)
                      ...+|++|+|+++.+... ++..+..+++|++|+|++|.+++..+..+..+++|++|+|+++ .++.. +...+.++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            344666666666665433 3344566666666666666666555556666666666666663 33311 12223455666


Q ss_pred             CEEEccCcc-CCCC-CCcccc-CCCCCCEEEccCC--ccCC-CCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCcEEEc
Q 004232          193 TFLSMRNNK-LAGP-FPSSIQ-RISTLSDLDLSKN--AISG-SLPD-LSSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFL  265 (766)
Q Consensus       193 ~~L~L~~N~-l~~~-~p~~~~-~l~~L~~L~Ls~N--~l~~-~~p~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~l  265 (766)
                      ++|+++++. ++.. ++..+. ..++|+.|++++.  .++. .+.. ..++++|++|++++|.                 
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-----------------  186 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-----------------  186 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-----------------
T ss_pred             cccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-----------------
Confidence            666666642 3211 111122 2345666666543  1211 0111 1334555555555432                 


Q ss_pred             cCCcCccCCcccccCCCCCCEEEccC-CcCCCCCccccCCCCCCCeEEeecCcCcccCCccCCCCCCccEEeCcCCcccc
Q 004232          266 SNNSFSGEIPKQYGQLNQLQQLDMSF-NALRGMPPPAIFSLPNISDLNLASNKFSGSLPKNLNCGGKLVFFDISNNKLTG  344 (766)
Q Consensus       266 s~N~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~L~~L~ls~N~l~g  344 (766)
                         .+++.....+..+++|++|++++ +.++......+.++++|+.|+++++--.+.++.....++.   |++..++++.
T Consensus       187 ---~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~  260 (284)
T d2astb2         187 ---MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTT  260 (284)
T ss_dssp             ---TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCC
T ss_pred             ---CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCC
Confidence               34555666778889999999998 4677666667788899999999887221222221122333   4456777776


Q ss_pred             CCCCCCCC
Q 004232          345 GLPSCLSN  352 (766)
Q Consensus       345 ~~p~~~~~  352 (766)
                      ..++.+++
T Consensus       261 ~~~~~~~~  268 (284)
T d2astb2         261 IARPTIGN  268 (284)
T ss_dssp             TTCSSCSS
T ss_pred             CCCCccCc
Confidence            66666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=4.3e-14  Score=149.48  Aligned_cols=243  Identities=19%  Similarity=0.221  Sum_probs=138.9

Q ss_pred             ccccccCCCCCCEEeccccccccc----CCccccCCCCCCEEecccccCccC----------CCccCCCCCCCCEEEccC
Q 004232          110 FVTTLARLTSLRVLSLVSLGIWGS----LPDKIHRLYSLEYLDLSSNFLFGS----------VPPKISTMVKLQTLILDD  175 (766)
Q Consensus       110 ~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~  175 (766)
                      +...+.+.+.|+.|+|++|.+...    +-..+...++|+.|+++++.....          +...+..+++|+.|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344567778888888888877432    334566778888888877654311          112345567777777777


Q ss_pred             CcCCCC----CCcccCCCCCCCEEEccCccCCCCCCcc-------------ccCCCCCCEEEccCCccCCCCC-----CC
Q 004232          176 NFFNNT----IPNWFDSLPSLTFLSMRNNKLAGPFPSS-------------IQRISTLSDLDLSKNAISGSLP-----DL  233 (766)
Q Consensus       176 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~-------------~~~l~~L~~L~Ls~N~l~~~~p-----~~  233 (766)
                      |.++..    +...+...++|++|++++|.+...-...             ....+.|+.|++++|.++..--     .+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            776643    2233445667777777777654211000             1234566666666665542100     12


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCcEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCC----CccccCCCCCCC
Q 004232          234 SSLGSLNVLNLSDNKLDSNLPKLPRGLVMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM----PPPAIFSLPNIS  309 (766)
Q Consensus       234 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~l~~L~  309 (766)
                      ...+.|++|++++|.++..                .+...+...+..+++|+.|+|++|.++..    +...+..+++|+
T Consensus       183 ~~~~~L~~L~L~~n~i~~~----------------g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPE----------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHH----------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             hhhhhhccccccccccccc----------------ccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            3345566666655554310                00001233455677788888888876532    223456677888


Q ss_pred             eEEeecCcCcccCCc----cCC--CCCCccEEeCcCCccccC----CCCCCC-CCCCCceeecCCCcCCC
Q 004232          310 DLNLASNKFSGSLPK----NLN--CGGKLVFFDISNNKLTGG----LPSCLS-NESDKRVVKFRGNCLSS  368 (766)
Q Consensus       310 ~L~L~~N~l~g~~p~----~~~--~~~~L~~L~ls~N~l~g~----~p~~~~-~~~~l~~l~l~~N~l~~  368 (766)
                      .|+|++|.+++.-..    .+.  ....|+.||+++|+++..    +...+. +.+.++.+++++|+++.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            888888877643111    121  235688888888887532    122221 35678888888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.6e-15  Score=161.31  Aligned_cols=258  Identities=22%  Similarity=0.225  Sum_probs=174.2

Q ss_pred             cccccCCCCCCEEecccccccc----cCCccccCCCCCCEEecccccCccC----CCccCC-CCCCCCEEEccCCcCCCC
Q 004232          111 VTTLARLTSLRVLSLVSLGIWG----SLPDKIHRLYSLEYLDLSSNFLFGS----VPPKIS-TMVKLQTLILDDNFFNNT  181 (766)
Q Consensus       111 ~~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~  181 (766)
                      ..-+..+++|++|+|++|+++.    .++..+..+++|++|||++|.|+..    +...+. ...+|++|+|++|+++..
T Consensus        20 ~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~   99 (460)
T d1z7xw1          20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA   99 (460)
T ss_dssp             HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred             HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccc
Confidence            4456778999999999998863    4566778999999999999988521    223332 345799999999998753


Q ss_pred             ----CCcccCCCCCCCEEEccCccCCCCCC---------------------------------ccccCCCCCCEEEccCC
Q 004232          182 ----IPNWFDSLPSLTFLSMRNNKLAGPFP---------------------------------SSIQRISTLSDLDLSKN  224 (766)
Q Consensus       182 ----~p~~~~~l~~L~~L~L~~N~l~~~~p---------------------------------~~~~~l~~L~~L~Ls~N  224 (766)
                          ++..+..+++|++|+|++|.++..-.                                 ..+.....++.++++++
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~  179 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  179 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccc
Confidence                46678889999999999998752100                                 00122355667777665


Q ss_pred             ccCCC-----------CC-----------------------CCCCCCCCCEEECCCCCCCCC--------CCCCCCCCcE
Q 004232          225 AISGS-----------LP-----------------------DLSSLGSLNVLNLSDNKLDSN--------LPKLPRGLVM  262 (766)
Q Consensus       225 ~l~~~-----------~p-----------------------~~~~l~~L~~L~ls~N~l~~~--------~p~~~~~l~~  262 (766)
                      .....           .+                       .+.....++.+++++|.+...        .......+..
T Consensus       180 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~  259 (460)
T d1z7xw1         180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  259 (460)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccc
Confidence            43210           00                       012345677788877765321        1123456889


Q ss_pred             EEccCCcCccC----CcccccCCCCCCEEEccCCcCCCCCccc-----cCCCCCCCeEEeecCcCcccCCc----cCCCC
Q 004232          263 AFLSNNSFSGE----IPKQYGQLNQLQQLDMSFNALRGMPPPA-----IFSLPNISDLNLASNKFSGSLPK----NLNCG  329 (766)
Q Consensus       263 l~ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~g~~p~----~~~~~  329 (766)
                      +++++|.+...    ....+...+.++.+++++|.++......     ......|+.+++++|.++.....    .+...
T Consensus       260 l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~  339 (460)
T d1z7xw1         260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  339 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccc
Confidence            99999988753    2334567889999999999986422211     12346899999999998754322    23445


Q ss_pred             CCccEEeCcCCccccC----CCCCC-CCCCCCceeecCCCcCCC
Q 004232          330 GKLVFFDISNNKLTGG----LPSCL-SNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       330 ~~L~~L~ls~N~l~g~----~p~~~-~~~~~l~~l~l~~N~l~~  368 (766)
                      .+|+.|||++|+++..    ++..+ ...+.|+.|++++|.++.
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            6899999999998742    22223 245679999999998863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=5.4e-14  Score=148.68  Aligned_cols=219  Identities=16%  Similarity=0.160  Sum_probs=148.3

Q ss_pred             cCCccccCCCCCCEEecccccCcc----CCCccCCCCCCCCEEEccCCcCCCCC----------CcccCCCCCCCEEEcc
Q 004232          133 SLPDKIHRLYSLEYLDLSSNFLFG----SVPPKISTMVKLQTLILDDNFFNNTI----------PNWFDSLPSLTFLSMR  198 (766)
Q Consensus       133 ~~p~~~~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~----------p~~~~~l~~L~~L~L~  198 (766)
                      .+...+.+...|+.|+|++|.+..    .+...+...++|+.|+++++.+....          ...+...++|+.|+|+
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            344567788999999999998853    23455778899999999987654321          1234567888888888


Q ss_pred             CccCCCC----CCccccCCCCCCEEEccCCccCCCC--------CC------CCCCCCCCEEECCCCCCCCCCCCCCCCC
Q 004232          199 NNKLAGP----FPSSIQRISTLSDLDLSKNAISGSL--------PD------LSSLGSLNVLNLSDNKLDSNLPKLPRGL  260 (766)
Q Consensus       199 ~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~------~~~l~~L~~L~ls~N~l~~~~p~~~~~l  260 (766)
                      +|.++..    +...+...++|+.|++++|.+...-        ..      ....+.|+.+++++|.++..        
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~--------  173 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--------  173 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--------
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc--------
Confidence            8888654    2334456788888888888764210        00      12345666666666654310        


Q ss_pred             cEEEccCCcCccCCcccccCCCCCCEEEccCCcCCCC-----CccccCCCCCCCeEEeecCcCccc----CCccCCCCCC
Q 004232          261 VMAFLSNNSFSGEIPKQYGQLNQLQQLDMSFNALRGM-----PPPAIFSLPNISDLNLASNKFSGS----LPKNLNCGGK  331 (766)
Q Consensus       261 ~~l~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~~~~  331 (766)
                              . ...+...+...++|+.|+|++|+++..     ....+..+++|+.|+|++|.++..    +...+..+++
T Consensus       174 --------~-~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         174 --------S-MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             --------G-HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             --------c-cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence                    0 012334456778999999999998642     233466789999999999998632    3455677899


Q ss_pred             ccEEeCcCCccccCCCCCC------CCCCCCceeecCCCcCCC
Q 004232          332 LVFFDISNNKLTGGLPSCL------SNESDKRVVKFRGNCLSS  368 (766)
Q Consensus       332 L~~L~ls~N~l~g~~p~~~------~~~~~l~~l~l~~N~l~~  368 (766)
                      |+.|+|++|.+++.-...+      .....++.|++++|.++.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            9999999999875321111      123578999999998763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.9e-14  Score=139.18  Aligned_cols=130  Identities=22%  Similarity=0.265  Sum_probs=105.8

Q ss_pred             cccccccCCCCCCEEecccccccccCCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCC
Q 004232          109 SFVTTLARLTSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDS  188 (766)
Q Consensus       109 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  188 (766)
                      .++.++..|++|++|+|++|.|.. ++ .|.+|++|++|+|++|.|+ .+|..+..+++|++|++++|+++..  +.+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccc
Confidence            356678999999999999999975 44 5899999999999999997 5676666677899999999999853  34788


Q ss_pred             CCCCCEEEccCccCCCCCC-ccccCCCCCCEEEccCCccCCCCCC-----------CCCCCCCCEEE
Q 004232          189 LPSLTFLSMRNNKLAGPFP-SSIQRISTLSDLDLSKNAISGSLPD-----------LSSLGSLNVLN  243 (766)
Q Consensus       189 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-----------~~~l~~L~~L~  243 (766)
                      +++|++|++++|+++.... ..+..+++|+.|+|++|.+....+.           +..+++|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999999985322 4688999999999999988755443           34578888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.3e-11  Score=112.29  Aligned_cols=108  Identities=20%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CCCCEEecccccCccCCCccCCCCCCCCEEEccCC-cCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCCCCCCEEE
Q 004232          142 YSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDN-FFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLSDLD  220 (766)
Q Consensus       142 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  220 (766)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            33445666666554 35555666666666666544 35555556666777777777777777666666677777777777


Q ss_pred             ccCCccCCCCCCCCCCCCCCEEECCCCCCC
Q 004232          221 LSKNAISGSLPDLSSLGSLNVLNLSDNKLD  250 (766)
Q Consensus       221 Ls~N~l~~~~p~~~~l~~L~~L~ls~N~l~  250 (766)
                      |++|+|+...+......+|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            777777655554433445677777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.8e-14  Score=137.11  Aligned_cols=111  Identities=28%  Similarity=0.327  Sum_probs=62.7

Q ss_pred             CCccccCCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCccccCC
Q 004232          134 LPDKIHRLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRI  213 (766)
Q Consensus       134 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  213 (766)
                      +|.++..|++|++|+|++|+|+ .++ .+.++++|++|+|++|.++ .+|..+..+++|++|++++|+++. + +.+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            3455666777777777777765 333 3666666666666666665 344444445556666666666653 2 235555


Q ss_pred             CCCCEEEccCCccCCCC--CCCCCCCCCCEEECCCCCC
Q 004232          214 STLSDLDLSKNAISGSL--PDLSSLGSLNVLNLSDNKL  249 (766)
Q Consensus       214 ~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~ls~N~l  249 (766)
                      ++|+.|+|++|+++...  ..+..+++|+.|++++|.+
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            66666666666655321  1244455555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.2e-11  Score=111.30  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             CCCCEEecccccccccCCccccCCCCCCEEecccc-cCccCCCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEE
Q 004232          118 TSLRVLSLVSLGIWGSLPDKIHRLYSLEYLDLSSN-FLFGSVPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLS  196 (766)
Q Consensus       118 ~~L~~L~L~~n~l~~~~p~~~~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  196 (766)
                      .....++.+++++. ..|..+..+++|++|+|++| .|+...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34456777777764 35667888888888888766 47766667788899999999999998888888888999999999


Q ss_pred             ccCccCCCCCCccccCCCCCCEEEccCCccC
Q 004232          197 MRNNKLAGPFPSSIQRISTLSDLDLSKNAIS  227 (766)
Q Consensus       197 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  227 (766)
                      |++|+|+...+..|. ..+|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCccc
Confidence            999998844444444 447899999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-08  Score=94.00  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=50.4

Q ss_pred             CCCCCCEEecccccCccCCCccCCCCCCCCEEEccCCcCCCC--CCcccCCCCCCCEEEccCccCCCCCCccccCCCCCC
Q 004232          140 RLYSLEYLDLSSNFLFGSVPPKISTMVKLQTLILDDNFFNNT--IPNWFDSLPSLTFLSMRNNKLAGPFPSSIQRISTLS  217 (766)
Q Consensus       140 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  217 (766)
                      .+..+..|++.+|.. ..++..+..+++|++|+|++|+++..  ++..+..+++|+.|+|++|+++...+-.+....+|+
T Consensus        40 ~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          40 AQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             TTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            333344444443332 22333334455566666666665542  123345566666666666666533222233334566


Q ss_pred             EEEccCCccCCCCCC--------CCCCCCCCEEE
Q 004232          218 DLDLSKNAISGSLPD--------LSSLGSLNVLN  243 (766)
Q Consensus       218 ~L~Ls~N~l~~~~p~--------~~~l~~L~~L~  243 (766)
                      .|++++|.++.....        +..+++|+.||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            666666666544332        34456666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.7e-08  Score=91.83  Aligned_cols=87  Identities=23%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             CCccccCCCCCCEEecccccCccC--CCccCCCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCccCCCCCCc---
Q 004232          134 LPDKIHRLYSLEYLDLSSNFLFGS--VPPKISTMVKLQTLILDDNFFNNTIPNWFDSLPSLTFLSMRNNKLAGPFPS---  208 (766)
Q Consensus       134 ~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---  208 (766)
                      ++..+..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++...+-.+....+|+.|++++|.++.....   
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            344445667777777777777643  233455677777777777777654332333445677777777777655442   


Q ss_pred             ----cccCCCCCCEEE
Q 004232          209 ----SIQRISTLSDLD  220 (766)
Q Consensus       209 ----~~~~l~~L~~L~  220 (766)
                          .+..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                245677777775

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.98  E-value=2.9e-05  Score=76.67  Aligned_cols=150  Identities=16%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             HHHHHHhcCCCcCCceecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCC-CCCcccccceeecCCCC
Q 004232          476 EELKEATNNFDMSAIMGEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLR-HPHLVCLLGHCIDGGGR  554 (766)
Q Consensus       476 ~~l~~~~~~f~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~g~~~~~~~~  554 (766)
                      .++++....|+..+..+-++-..||+.... +..+.+|+...........+.+|...+..+. |--+-++++++.+++  
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~-~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~--   83 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDG--   83 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETT--
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEeC-CCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCC--
Confidence            456666667765554444445689998754 4556788776544444445677888777663 322344555555442  


Q ss_pred             CCcCcceEEEEEEccCCCChhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-------------------------
Q 004232          555 DDYAVNKVFLVYEFMSNGNFRTHISENTPGKVLNWSERLAVLIGVAKAVQFLHTG-------------------------  609 (766)
Q Consensus       555 ~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-------------------------  609 (766)
                            ..++|||++++.++........     .   ...++.++++.++.||+.                         
T Consensus        84 ------~~~lv~~~l~G~~~~~~~~~~~-----~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (263)
T d1j7la_          84 ------WSNLLMSEADGVLCSEEYEDEQ-----S---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNND  149 (263)
T ss_dssp             ------EEEEEEECCSSEEHHHHTTTCS-----C---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTT
T ss_pred             ------ceEEEEEecccccccccccccc-----c---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHH
Confidence                  5799999999988754332110     1   112233344444444421                         


Q ss_pred             ----------------------------C---CCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          610 ----------------------------V---IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       610 ----------------------------~---~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                                                  .   .+.++|+|+.+.||+++++...-|.||+.+..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         150 LADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             hhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                                        1   12378999999999999877677999998743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.50  E-value=1.4e-05  Score=73.30  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             cCCCCCCEEecccc-ccccc----CCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCCCC----
Q 004232          115 ARLTSLRVLSLVSL-GIWGS----LPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFNNT----  181 (766)
Q Consensus       115 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----  181 (766)
                      .+.++|+.|+|+++ .+...    +-..+...++|++|+|++|.+...    +...+...+.|++|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577888888764 34321    223456677788888888877522    223344456677777777766532    


Q ss_pred             CCcccCCCCCCCEEEccCccCCCC-------CCccccCCCCCCEEEccCC
Q 004232          182 IPNWFDSLPSLTFLSMRNNKLAGP-------FPSSIQRISTLSDLDLSKN  224 (766)
Q Consensus       182 ~p~~~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~Ls~N  224 (766)
                      +-..+...+.|++|+|++|.+...       +...+..-++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            122345556666777766654321       1222333455666655544

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.19  E-value=0.00043  Score=67.43  Aligned_cols=141  Identities=12%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             eecCCc-eeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCC--CCcccccceeecCCCCCCcCcceEEEEEE
Q 004232          491 MGEGSY-GKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRH--PHLVCLLGHCIDGGGRDDYAVNKVFLVYE  567 (766)
Q Consensus       491 lG~G~f-g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~H--pniv~l~g~~~~~~~~~~~~~~~~~lv~E  567 (766)
                      +..|.. +.||+....++..+.+|.-.....   ..+..|...++.+..  --+-++++++.+++        ..++|||
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~--------~~~~v~~   86 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEAG--------RDWLLLG   86 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECSS--------CEEEEEE
T ss_pred             cCCcccCCeEEEEEeCCCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeeccccc--------ceEEEEE
Confidence            344443 679999888788888887655432   245667777766532  22445566655542        5799999


Q ss_pred             ccCCCChhhh-----------------hhcCC-CCCCC--CHHHHHHHHH--------------------HHHHHHHHHh
Q 004232          568 FMSNGNFRTH-----------------ISENT-PGKVL--NWSERLAVLI--------------------GVAKAVQFLH  607 (766)
Q Consensus       568 y~~~GsL~~~-----------------l~~~~-~~~~l--~~~~~~~i~~--------------------~ia~gL~yLH  607 (766)
                      |+++-++...                 ||... .....  .+.....-..                    .....+..+.
T Consensus        87 ~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (255)
T d1nd4a_          87 EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK  166 (255)
T ss_dssp             CCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHH
T ss_pred             eeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHH
Confidence            9998665321                 11100 00001  1111111000                    0222333333


Q ss_pred             cCC----CCCcccCCCCCCceEEcCCCcEEEecCCCCcc
Q 004232          608 TGV----IPGFFNNRVKTNNILLNEHRIAKLSDYGLSIV  642 (766)
Q Consensus       608 ~~~----~~~ivHrdlk~~NILld~~~~~kl~DFGla~~  642 (766)
                      ...    .+.++|+|+.+.||+++++..+-|.||+.+..
T Consensus       167 ~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         167 ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             HTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            321    12479999999999999876778999988643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.14  E-value=4.8e-05  Score=69.63  Aligned_cols=109  Identities=12%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             cCCCCCCEEecccc-cCccC----CCccCCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEEccCccCCCC----
Q 004232          139 HRLYSLEYLDLSSN-FLFGS----VPPKISTMVKLQTLILDDNFFNNT----IPNWFDSLPSLTFLSMRNNKLAGP----  205 (766)
Q Consensus       139 ~~L~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----  205 (766)
                      .+.++|++|+|+++ .+...    +-..+...++|++|+|++|.+...    +...+...+.|+.|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45678999999864 45321    223466777888888888877632    223345567788888888887632    


Q ss_pred             CCccccCCCCCCEEEccCCccCCCCC--------CCCCCCCCCEEECCCC
Q 004232          206 FPSSIQRISTLSDLDLSKNAISGSLP--------DLSSLGSLNVLNLSDN  247 (766)
Q Consensus       206 ~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~l~~L~~L~ls~N  247 (766)
                      +-..+...++|++|+|++|.+...-.        .+..-++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            12235556778888888776543211        1233466777777554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.62  E-value=0.0001  Score=67.14  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             ccCCCCCCEEeccc-cccccc----CCccccCCCCCCEEecccccCccC----CCccCCCCCCCCEEEccCCcCCCC---
Q 004232          114 LARLTSLRVLSLVS-LGIWGS----LPDKIHRLYSLEYLDLSSNFLFGS----VPPKISTMVKLQTLILDDNFFNNT---  181 (766)
Q Consensus       114 l~~l~~L~~L~L~~-n~l~~~----~p~~~~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---  181 (766)
                      ..+.++|+.|+|++ +.++..    +-..+...++|++|+|++|.+...    +-..+...++|+.|++++|.++..   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            35667888888886 445321    233456778888888888877532    223345567788888887776532   


Q ss_pred             -CCcccCCCCCCCEEEcc--CccCCC----CCCccccCCCCCCEEEccCCc
Q 004232          182 -IPNWFDSLPSLTFLSMR--NNKLAG----PFPSSIQRISTLSDLDLSKNA  225 (766)
Q Consensus       182 -~p~~~~~l~~L~~L~L~--~N~l~~----~~p~~~~~l~~L~~L~Ls~N~  225 (766)
                       +-..+...++|+.++|+  +|.+..    .+...+...++|+.|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             22345566677765553  455532    223334456667777766554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.0032  Score=65.54  Aligned_cols=75  Identities=12%  Similarity=0.112  Sum_probs=45.1

Q ss_pred             CceecCCceeEEEEEecC-CceEEEEEccCC-------hhhhHHHHHHHHHHHHhCC-C--CCcccccceeecCCCCCCc
Q 004232          489 AIMGEGSYGKLYKGRLEN-GTSVAIRCLPSS-------KKYTVRNLKLRLDLLAKLR-H--PHLVCLLGHCIDGGGRDDY  557 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~-------~~~~~~~~~~e~~~l~~l~-H--pniv~l~g~~~~~~~~~~~  557 (766)
                      +.||.|....||+....+ ++.|.||.-...       ......+...|.+.|+.+. +  ..+.+++++..+       
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~-------  104 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTE-------  104 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETT-------
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCC-------
Confidence            468999999999998654 678888864321       1112234556777776552 2  234445544322       


Q ss_pred             CcceEEEEEEccCCCC
Q 004232          558 AVNKVFLVYEFMSNGN  573 (766)
Q Consensus       558 ~~~~~~lv~Ey~~~Gs  573 (766)
                         ..++||||+++..
T Consensus       105 ---~~~lvmE~L~~~~  117 (392)
T d2pula1         105 ---MAVTVMEDLSHLK  117 (392)
T ss_dssp             ---TTEEEECCCTTSE
T ss_pred             ---CCEEEEeccCCcc
Confidence               3479999998754

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.024  Score=56.92  Aligned_cols=75  Identities=9%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             eeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccceeecCCCCCCcCcceEEEEEEccCCCC
Q 004232          497 GKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGHCIDGGGRDDYAVNKVFLVYEFMSNGN  573 (766)
Q Consensus       497 g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~~~~~~~~~~~~~~~~~lv~Ey~~~Gs  573 (766)
                      -.||+.+.++|..+++|...... ...+++..|...+..+....+--.......++ .........+.+++|++|..
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~-~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~-~~~~~~~~~~~l~~~~~G~~  110 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQ-TLLNHQGFYFAVFPSVGGRQ  110 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTB-SCEEETTEEEEEEECCCCEE
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCCCCceecCCC-eeeeeeeEEEEEEeecCCcC
Confidence            47999999999999999876542 23466778888877764322211111111111 10011235788999998744

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.32  E-value=0.0007  Score=61.37  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             cccCCCCCCEEeccc-ccCccC----CCccCCCCCCCCEEEccCCcCCCC----CCcccCCCCCCCEEEccCccCCCC--
Q 004232          137 KIHRLYSLEYLDLSS-NFLFGS----VPPKISTMVKLQTLILDDNFFNNT----IPNWFDSLPSLTFLSMRNNKLAGP--  205 (766)
Q Consensus       137 ~~~~L~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--  205 (766)
                      ...+.++|++|+|++ |.++..    +-..+...++|++|+|++|.++..    +-..+...+.|+.|++++|.+...  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678899999987 455321    234456788899999999987643    223345678889999998887532  


Q ss_pred             --CCccccCCCCCCEEEcc--CCccCCC-----CCCCCCCCCCCEEECCCCC
Q 004232          206 --FPSSIQRISTLSDLDLS--KNAISGS-----LPDLSSLGSLNVLNLSDNK  248 (766)
Q Consensus       206 --~p~~~~~l~~L~~L~Ls--~N~l~~~-----~p~~~~l~~L~~L~ls~N~  248 (766)
                        +-..+...++|+.++|+  +|.+...     ...+...++|+.|+++.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              22445667788876554  5555321     1113456778888876653

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.05  E-value=0.04  Score=54.74  Aligned_cols=164  Identities=12%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             cCHHHHHHHhcCCCcCCce-----ecCCceeEEEEEecCCceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcccccce
Q 004232          473 FTLEELKEATNNFDMSAIM-----GEGSYGKLYKGRLENGTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLVCLLGH  547 (766)
Q Consensus       473 ~~~~~l~~~~~~f~~~~~l-----G~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~g~  547 (766)
                      .+.+|+.....+|.+.+..     ..|---+.|+.+..+|+ ..+|+.....  ..+++..|+++|..+.+.++.--. -
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~-yVLri~~~~~--~~~~l~~~~~~l~~L~~~g~pvp~-p   78 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDP-LILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPL-P   78 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCC-EEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCC-B
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCCc-EEEEEcCCCC--CHHHHHHHHHHHHhhhhccccccc-c
Confidence            4667888888888775544     34555778999887765 6678775432  224455666666666432221000 0


Q ss_pred             eecCCCCCCc-CcceEEEEEEccCCCChhh--------------hhhcC----CC---CCCC-CHHHH------------
Q 004232          548 CIDGGGRDDY-AVNKVFLVYEFMSNGNFRT--------------HISEN----TP---GKVL-NWSER------------  592 (766)
Q Consensus       548 ~~~~~~~~~~-~~~~~~lv~Ey~~~GsL~~--------------~l~~~----~~---~~~l-~~~~~------------  592 (766)
                      ....++.... .......++.+..+.....              .++..    ..   .... .|...            
T Consensus        79 i~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (316)
T d2ppqa1          79 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEV  158 (316)
T ss_dssp             CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGT
T ss_pred             ceecCCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhc
Confidence            0111111100 0124567777776644321              01100    00   0000 01110            


Q ss_pred             ----HHHHHHHHHHHHHHhc-CCCCCcccCCCCCCceEEcCCCcEEEecCCCC
Q 004232          593 ----LAVLIGVAKAVQFLHT-GVIPGFFNNRVKTNNILLNEHRIAKLSDYGLS  640 (766)
Q Consensus       593 ----~~i~~~ia~gL~yLH~-~~~~~ivHrdlk~~NILld~~~~~kl~DFGla  640 (766)
                          ...+......+.-.+. ....++||+|+.+.||+++.+...-|.||+.+
T Consensus       159 ~~~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~  211 (316)
T d2ppqa1         159 EKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFA  211 (316)
T ss_dssp             STTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTC
T ss_pred             chhHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEeccccc
Confidence                0111112222222222 12237999999999999998877789999987

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.03  E-value=0.062  Score=55.31  Aligned_cols=72  Identities=19%  Similarity=0.199  Sum_probs=45.7

Q ss_pred             CceecCCceeEEEEEecC--------CceEEEEEccCChhhhHHHHHHHHHHHHhCCCCCcc-cccceeecCCCCCCcCc
Q 004232          489 AIMGEGSYGKLYKGRLEN--------GTSVAIRCLPSSKKYTVRNLKLRLDLLAKLRHPHLV-CLLGHCIDGGGRDDYAV  559 (766)
Q Consensus       489 ~~lG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~~~e~~~l~~l~Hpniv-~l~g~~~~~~~~~~~~~  559 (766)
                      ..|+-|---.+|+....+        ...|.++......  ......+|..+++.+.-.+++ ++++++..         
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~--~~idr~~E~~i~~~ls~~gl~Pkll~~~~~---------  116 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIFSG---------  116 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEETT---------
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcc--hhhHHHHHHHHHHHHHhCCCCCeEEEEcCC---------
Confidence            467888888999988653        2456666654222  223455788888877433444 56666532         


Q ss_pred             ceEEEEEEccCCCCh
Q 004232          560 NKVFLVYEFMSNGNF  574 (766)
Q Consensus       560 ~~~~lv~Ey~~~GsL  574 (766)
                         .+|+||+++-.+
T Consensus       117 ---g~I~efi~g~~l  128 (395)
T d1nw1a_         117 ---GRLEEYIPSRPL  128 (395)
T ss_dssp             ---EEEECCCCEEEC
T ss_pred             ---ceEEEEeccccC
Confidence               588999987554