Citrus Sinensis ID: 004238
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | 2.2.26 [Sep-21-2011] | |||||||
| Q4PE39 | 773 | Protein transport protein | N/A | no | 0.975 | 0.966 | 0.480 | 0.0 | |
| A4R1J7 | 770 | Protein transport protein | N/A | no | 0.962 | 0.957 | 0.477 | 0.0 | |
| Q0US25 | 776 | Protein transport protein | N/A | no | 0.975 | 0.962 | 0.468 | 0.0 | |
| Q9C284 | 775 | Protein transport protein | N/A | no | 0.963 | 0.952 | 0.477 | 0.0 | |
| Q7SZE5 | 765 | Protein transport protein | yes | no | 0.964 | 0.966 | 0.474 | 0.0 | |
| P0CR38 | 763 | Protein transport protein | yes | no | 0.968 | 0.972 | 0.477 | 0.0 | |
| P0CR39 | 763 | Protein transport protein | N/A | no | 0.968 | 0.972 | 0.477 | 0.0 | |
| Q2URM9 | 769 | Protein transport protein | yes | no | 0.966 | 0.962 | 0.486 | 0.0 | |
| Q2HB00 | 773 | Protein transport protein | N/A | no | 0.960 | 0.952 | 0.474 | 0.0 | |
| A2Q8L1 | 768 | Protein transport protein | yes | no | 0.964 | 0.962 | 0.487 | 0.0 |
| >sp|Q4PE39|SEC23_USTMA Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1 | Back alignment and function desciption |
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Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/782 (48%), Positives = 511/782 (65%), Gaps = 35/782 (4%)
Query: 4 MASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-C 62
M D E DGVR++WNVWP +K+EA++ V+P++A +P++ D+P + Y P+ CK C
Sbjct: 1 MNVDDVEDRDGVRLSWNVWPSSKIEATRTVVPISALYTPLKEREDLPPVLYEPVTCKPPC 60
Query: 63 TAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQ 122
A LN + ++D K+WICPFC RN FPPHY IS TNLP EL P+YTT+EYTL Q
Sbjct: 61 RAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEYTLSRPAQ 120
Query: 123 NPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVH 182
P P+F++V+DTCM +++L R L ++ LLP NA+VGL+T+GT A VH
Sbjct: 121 IP----------PIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVH 170
Query: 183 ELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGR--------RAAGGYQKAAVPNAFPN 234
ELG+ K YVFRG KE + + + LGL+ R G Q PNA
Sbjct: 171 ELGYDACPKSYVFRGTKEYAPKAIQDMLGLNPGARPMGAGAPGAPGGPSQAPRPPNATAQ 230
Query: 235 SGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTG 294
G SRFLLP S+CE+ L +L++LQ D WPVA R RCTGVALSVA G+L P TG
Sbjct: 231 MGASRFLLPVSQCEFQLTQILEQLQKDPWPVANDKRSQRCTGVALSVAVGMLETTFPNTG 290
Query: 295 ARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGH 354
AR++ GGP TEGPG +VS +L E +RSH D+DKD A ++K+A+KFY+ +AK+ GH
Sbjct: 291 ARVMLFCGGPATEGPGMVVSTELRERIRSHHDIDKDNAKYYKRAIKFYEAMAKRAAGNGH 350
Query: 355 VLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQS-LGLCFN 413
+D+FA LDQVG+ EMK T G ++LA+SF +FK SF R+F+ +Q L + FN
Sbjct: 351 TIDVFAGCLDQVGLLEMKGLANLTNGHMILADSFQMGIFKQSFHRLFQKDDQGHLQMGFN 410
Query: 414 GALEIICSKDIKIQGIIGPCTSLEKVRL--------RGEYYAWKMCGLDKSTCLTVFFDL 465
L++ C+K++K+ G+IG S K G+ AWK+C L T ++F++
Sbjct: 411 ATLDVQCTKELKVSGLIGHAVSANKKSGCVGETEIGIGQTSAWKLCSLTPRTSAGIYFEV 470
Query: 466 SSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQES 525
+ P + +QF+T +Q G+ LRVTT+ R + + S ++ FDQE+
Sbjct: 471 VTPA--GQPMQPGSRGLIQFVTHYQHASGQYRLRVTTIARNFAEGG--SGQIAASFDQEA 526
Query: 526 AAVVMARLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFM 585
AAV+MAR+ K E+++ D RWLDR LIRLC KF DYRKDDP SF L +FS++PQFM
Sbjct: 527 AAVLMARIAVFKAEIDDSPDVLRWLDRMLIRLCQKFADYRKDDPTSFRLGENFSIYPQFM 586
Query: 586 FNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVAS 645
F+LRRSQF+QVFNNSPDETA++R +LN E++ N+ +MIQP+L+SY F PQP LLD S
Sbjct: 587 FHLRRSQFLQVFNNSPDETAFYRHVLNTEDVNNSLIMIQPTLMSYGFEGPPQPVLLDSVS 646
Query: 646 IAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFP 705
I D +LLLDT+F ++IFHG T+AQWR GYQ+Q ++ F ++L P DA+ ++ DRFP
Sbjct: 647 IRPDVVLLLDTFFHILIFHGETVAQWRKAGYQDQEGYENFKEVLENPRADAQDLLADRFP 706
Query: 706 VPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSD---IIFTDDVSLQVFIEHLQRL 762
+PR +VCDQ+GSQARFLL+KLNPS T+ + + + IFTDDVSLQVF+EHL+RL
Sbjct: 707 IPRYIVCDQNGSQARFLLSKLNPSTTHMSGGMYGSSGNSGAAIFTDDVSLQVFMEHLKRL 766
Query: 763 AV 764
AV
Sbjct: 767 AV 768
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Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|A4R1J7|SEC23_MAGO7 Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0US25|SEC23_PHANO Protein transport protein SEC23 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SEC23 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9C284|SEC23_NEUCR Protein transport protein sec-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7SZE5|SC23A_DANRE Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|P0CR38|SEC23_CRYNJ Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CR39|SEC23_CRYNB Protein transport protein SEC23 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2URM9|SEC23_ASPOR Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2HB00|SEC23_CHAGB Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|A2Q8L1|SEC23_ASPNC Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| 255550700 | 782 | protein transport protein sec23, putativ | 1.0 | 0.979 | 0.843 | 0.0 | |
| 449459830 | 776 | PREDICTED: protein transport protein SEC | 0.993 | 0.980 | 0.832 | 0.0 | |
| 357462885 | 771 | Protein transport protein Sec23 [Medicag | 0.990 | 0.984 | 0.831 | 0.0 | |
| 356568585 | 766 | PREDICTED: protein transport protein SEC | 0.989 | 0.989 | 0.832 | 0.0 | |
| 356540108 | 767 | PREDICTED: protein transport protein SEC | 0.989 | 0.988 | 0.829 | 0.0 | |
| 356568587 | 787 | PREDICTED: protein transport protein SEC | 0.989 | 0.963 | 0.810 | 0.0 | |
| 359478005 | 785 | PREDICTED: protein transport protein SEC | 0.996 | 0.971 | 0.834 | 0.0 | |
| 356540110 | 788 | PREDICTED: protein transport protein SEC | 0.989 | 0.961 | 0.807 | 0.0 | |
| 224060455 | 775 | predicted protein [Populus trichocarpa] | 0.994 | 0.983 | 0.824 | 0.0 | |
| 224126767 | 777 | predicted protein [Populus trichocarpa] | 0.993 | 0.979 | 0.814 | 0.0 |
| >gi|255550700|ref|XP_002516399.1| protein transport protein sec23, putative [Ricinus communis] gi|223544497|gb|EEF46016.1| protein transport protein sec23, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1357 bits (3513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/782 (84%), Positives = 709/782 (90%), Gaps = 16/782 (2%)
Query: 1 MSEMASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK 60
MSE+A+TDPEGIDGVRM+WNVWPRTKVEASKCVIPLAASISPIR HPDIPTLPY+PLRCK
Sbjct: 1 MSEIANTDPEGIDGVRMSWNVWPRTKVEASKCVIPLAASISPIRHHPDIPTLPYSPLRCK 60
Query: 61 TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHS 120
TC++ LN FARVDFTAKIWICPFC+QRNHFPPHY+ ISETNLP ELYPQYTTV+YTLP+
Sbjct: 61 TCSSILNCFARVDFTAKIWICPFCFQRNHFPPHYSMISETNLPAELYPQYTTVQYTLPNP 120
Query: 121 MQNPNNPNPDPRLSP--VFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQ 178
NN N +P VF+FVLD CMIEEE G+ +S +KRAIGLLP+NA+VG V++GTQ
Sbjct: 121 NSINNNNNNPAPAAPAPVFLFVLDMCMIEEEFGFVKSAMKRAIGLLPENALVGFVSYGTQ 180
Query: 179 AHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSA-SGRRAAG-----GYQKAAVPNAF 232
A VHELGF+DMSKVYVFRG KEISKDQ++EQLGL SGRR AG GY + V N F
Sbjct: 181 AQVHELGFNDMSKVYVFRGTKEISKDQIIEQLGLGGVSGRRTAGPVGVGGYPQKGVQNGF 240
Query: 233 PNSGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPG 292
N+GV+RFLLPASECEYTLNSLLDELQ DQWPVA TR SRCTGVALSVA GLLGACLPG
Sbjct: 241 SNTGVTRFLLPASECEYTLNSLLDELQTDQWPVAHGTRASRCTGVALSVAAGLLGACLPG 300
Query: 293 TGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQ 352
TGARI+ALVGGPCTEGPGTIVSKDLS+PVRSHKDLDKDAAP+FKKAVKFYD LAKQLVSQ
Sbjct: 301 TGARIIALVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYDNLAKQLVSQ 360
Query: 353 GHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCF 412
GHVLDLFASALDQVGVAEMKVAVE+TGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCF
Sbjct: 361 GHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCF 420
Query: 413 NGALEIICSKDIKIQGIIGPCTSLEK--------VRLRGEYYAWKMCGLDKSTCLTVFFD 464
NG LEI CSKD+KIQGI+GPCTS+EK V G AWKMCGLDKSTCLTV+FD
Sbjct: 421 NGMLEINCSKDVKIQGILGPCTSMEKKGPNVADTVVGEGNTTAWKMCGLDKSTCLTVYFD 480
Query: 465 LSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQE 524
LSSSE+ N PG INPQLY+QFLTS+Q+PEG +LRVTT+TR+W+DSAVSSEELVQGFDQE
Sbjct: 481 LSSSEKSNAPGAINPQLYIQFLTSYQNPEGHILLRVTTITRRWIDSAVSSEELVQGFDQE 540
Query: 525 SAAVVMARLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQF 584
+AAVVMARLTS KME+EEGFDATRWLDR+LIRLCSKFGDYRKDDP+SFTLNP FSLFPQF
Sbjct: 541 TAAVVMARLTSHKMEIEEGFDATRWLDRNLIRLCSKFGDYRKDDPSSFTLNPCFSLFPQF 600
Query: 585 MFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVA 644
MFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVA
Sbjct: 601 MFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVA 660
Query: 645 SIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRF 704
SIAADRILLLD+YFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLL AP DDA LIIRDRF
Sbjct: 661 SIAADRILLLDSYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLHAPQDDARLIIRDRF 720
Query: 705 PVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAV 764
PVPRLVVCDQHGSQARFLLAKLNPSATYNNA+E+AAGSD+IFTDDVSLQVF EHLQRLAV
Sbjct: 721 PVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAV 780
Query: 765 QS 766
QS
Sbjct: 781 QS 782
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459830|ref|XP_004147649.1| PREDICTED: protein transport protein SEC23-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357462885|ref|XP_003601724.1| Protein transport protein Sec23 [Medicago truncatula] gi|355490772|gb|AES71975.1| Protein transport protein Sec23 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356568585|ref|XP_003552491.1| PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356540108|ref|XP_003538532.1| PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356568587|ref|XP_003552492.1| PREDICTED: protein transport protein SEC23-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|359478005|ref|XP_002268633.2| PREDICTED: protein transport protein SEC23-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356540110|ref|XP_003538533.1| PREDICTED: protein transport protein SEC23-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224060455|ref|XP_002300208.1| predicted protein [Populus trichocarpa] gi|222847466|gb|EEE85013.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224126767|ref|XP_002329468.1| predicted protein [Populus trichocarpa] gi|222870148|gb|EEF07279.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| TAIR|locus:2129460 | 773 | AT4G14160 "AT4G14160" [Arabido | 0.986 | 0.978 | 0.783 | 0.0 | |
| TAIR|locus:2201051 | 783 | AT1G05520 "AT1G05520" [Arabido | 0.826 | 0.808 | 0.793 | 8.2e-273 | |
| TAIR|locus:2049324 | 761 | AT2G21630 "AT2G21630" [Arabido | 0.967 | 0.973 | 0.555 | 1.5e-223 | |
| FB|FBgn0262125 | 773 | Sec23 "Sec23 ortholog (S. cere | 0.969 | 0.961 | 0.479 | 3.9e-195 | |
| UNIPROTKB|A4R1J7 | 770 | SEC23 "Protein transport prote | 0.966 | 0.961 | 0.471 | 5.9e-192 | |
| POMBASE|SPCC31H12.07 | 759 | sec231 "COPII cargo receptor s | 0.955 | 0.964 | 0.474 | 3.2e-191 | |
| ASPGD|ASPL0000061491 | 771 | sec23 [Emericella nidulans (ta | 0.968 | 0.962 | 0.476 | 9.8e-190 | |
| ZFIN|ZDB-GENE-040426-2823 | 765 | sec23a "Sec23 homolog A (S. ce | 0.964 | 0.966 | 0.467 | 2e-189 | |
| UNIPROTKB|Q15436 | 765 | SEC23A "Protein transport prot | 0.962 | 0.963 | 0.468 | 4.3e-189 | |
| UNIPROTKB|J9P1Q5 | 765 | SEC23A "Uncharacterized protei | 0.962 | 0.963 | 0.467 | 1.8e-188 |
| TAIR|locus:2129460 AT4G14160 "AT4G14160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3131 (1107.2 bits), Expect = 0., P = 0.
Identities = 607/775 (78%), Positives = 672/775 (86%)
Query: 2 SEMASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT 61
+++ D EGIDGVRMTWN+WPRTKVEASKCVIPLAASISPIR HP I LPYAPL CKT
Sbjct: 8 AKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYAPLDCKT 67
Query: 62 CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSM 121
C A LNAFARVDF A W+CPFCY RNHFP HY +ISE NLP ELYPQYTTVEYTLP
Sbjct: 68 CKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYTTVEYTLP--- 124
Query: 122 QNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHV 181
+P+ P P PVFVFVLDTCMIEEELGYA+S LK+AIGLLP+NA+VG V+FGTQAHV
Sbjct: 125 PDPSRV-PPP---PVFVFVLDTCMIEEELGYAKSALKQAIGLLPENALVGFVSFGTQAHV 180
Query: 182 HELGFSDMSKVYVFRGNKEISKDQVLEQXXXXXXXXXX-XXXYQKAAVPNAFPNSGVSRF 240
HELGFS+MSKV+VF+GNKE++KDQ+L+Q + K A N F +SGV RF
Sbjct: 181 HELGFSEMSKVFVFKGNKEVTKDQILDQLGLGSSSRRAPTSGFSKGA-QNGFQSSGVDRF 239
Query: 241 LLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVAL 300
LLPASECEYTL+ LLDELQ DQWPV P RP RCTGVALSVA GLLGACLPGTGARIVAL
Sbjct: 240 LLPASECEYTLDLLLDELQSDQWPVQPGHRPQRCTGVALSVAAGLLGACLPGTGARIVAL 299
Query: 301 VGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFA 360
VGGPCTEGPGTI+SKDLS+PVRSHKDLDKDAAP++KKAVKFYD +AKQLV+QGHVLDLFA
Sbjct: 300 VGGPCTEGPGTIISKDLSDPVRSHKDLDKDAAPYYKKAVKFYDSIAKQLVAQGHVLDLFA 359
Query: 361 SALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGALEIIC 420
SALDQVGVAEMKVAVE TGGLVVL+ESFGHSVFKDSFKR+FEDGE SLGLCFNG LEI C
Sbjct: 360 SALDQVGVAEMKVAVESTGGLVVLSESFGHSVFKDSFKRMFEDGEHSLGLCFNGTLEINC 419
Query: 421 SKDIKIQGIIGPCTSLEK--------VRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLN 472
SKDIKIQG+IGPC+SLEK V G AWK+CGLDKSTCLTVFFDLSS+
Sbjct: 420 SKDIKIQGVIGPCSSLEKKGPNVADTVIGEGNTSAWKLCGLDKSTCLTVFFDLSSTGS-T 478
Query: 473 TPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSE-ELVQGFDQESAAVVMA 531
PG +N QLYLQF+T +Q+ EG+S+ RVTT+TRQWVD+AVS+E LVQGFDQE+AAVVMA
Sbjct: 479 APGALNQQLYLQFITRYQNSEGKSLARVTTLTRQWVDTAVSTEVNLVQGFDQETAAVVMA 538
Query: 532 RLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRS 591
RLTSLKME EEGFDATRWLDR+LIRLCSKFG+YRKDDP SFTL P +LFPQFMFNLRRS
Sbjct: 539 RLTSLKMETEEGFDATRWLDRTLIRLCSKFGEYRKDDPTSFTLKPYLTLFPQFMFNLRRS 598
Query: 592 QFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRI 651
QFVQVFNNSPDETAYFRMLLNRENI+NA VMIQPSL SYSFNS PQ ALLDVASIAAD+I
Sbjct: 599 QFVQVFNNSPDETAYFRMLLNRENISNAIVMIQPSLTSYSFNSGPQAALLDVASIAADKI 658
Query: 652 LLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVV 711
LLLD YFSVV+FHGMTI+QWRNMGY +QPEH+AFAQLL+AP +D+++++R+RFPVPRLVV
Sbjct: 659 LLLDAYFSVVVFHGMTISQWRNMGYHHQPEHEAFAQLLQAPQEDSQMLVRERFPVPRLVV 718
Query: 712 CDQHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQS 766
CDQHGSQARFLLAKLNPSATYNNANE++AGSDIIFTDDVSLQVFIEHLQ+LAVQS
Sbjct: 719 CDQHGSQARFLLAKLNPSATYNNANEMSAGSDIIFTDDVSLQVFIEHLQKLAVQS 773
|
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| TAIR|locus:2201051 AT1G05520 "AT1G05520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2049324 AT2G21630 "AT2G21630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4R1J7 SEC23 "Protein transport protein SEC23" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| POMBASE|SPCC31H12.07 sec231 "COPII cargo receptor subunit Sec23a (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000061491 sec23 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2823 sec23a "Sec23 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P1Q5 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SZE5 | SC23A_DANRE | No assigned EC number | 0.4740 | 0.9647 | 0.9660 | yes | no |
| Q5R9P3 | SC23A_PONAB | No assigned EC number | 0.4727 | 0.9647 | 0.9660 | yes | no |
| Q2URM9 | SEC23_ASPOR | No assigned EC number | 0.4864 | 0.9660 | 0.9622 | yes | no |
| A3GFA2 | SEC23_PICST | No assigned EC number | 0.4418 | 0.9556 | 0.9773 | yes | no |
| Q6FSI6 | SC232_CANGA | No assigned EC number | 0.4179 | 0.9582 | 0.9696 | yes | no |
| Q05AS9 | SC23A_XENTR | No assigned EC number | 0.4668 | 0.9660 | 0.9673 | yes | no |
| Q54T59 | SEC23_DICDI | No assigned EC number | 0.4443 | 0.9516 | 0.972 | yes | no |
| Q4WK80 | SEC23_ASPFU | No assigned EC number | 0.4883 | 0.9673 | 0.95 | yes | no |
| Q15436 | SC23A_HUMAN | No assigned EC number | 0.4727 | 0.9647 | 0.9660 | yes | no |
| Q6CPH3 | SEC23_KLULA | No assigned EC number | 0.4155 | 0.9595 | 0.9671 | yes | no |
| Q6C5L5 | SEC23_YARLI | No assigned EC number | 0.4622 | 0.9595 | 0.9696 | yes | no |
| Q6BQT6 | SEC23_DEBHA | No assigned EC number | 0.4490 | 0.9503 | 0.9758 | yes | no |
| A2Q8L1 | SEC23_ASPNC | No assigned EC number | 0.4877 | 0.9647 | 0.9622 | yes | no |
| P0CR38 | SEC23_CRYNJ | No assigned EC number | 0.4774 | 0.9686 | 0.9724 | yes | no |
| Q5BGR9 | SEC23_EMENI | No assigned EC number | 0.4799 | 0.9686 | 0.9623 | yes | no |
| Q01405 | SC23A_MOUSE | No assigned EC number | 0.4701 | 0.9647 | 0.9660 | yes | no |
| P15303 | SEC23_YEAST | No assigned EC number | 0.4180 | 0.9634 | 0.9609 | yes | no |
| O74873 | SC231_SCHPO | No assigned EC number | 0.4727 | 0.9569 | 0.9657 | yes | no |
| Q758M7 | SEC23_ASHGO | No assigned EC number | 0.4187 | 0.9582 | 0.9708 | yes | no |
| Q8SQX2 | SEC23_ENCCU | No assigned EC number | 0.3209 | 0.9007 | 0.9759 | yes | no |
| A2VDL8 | SC23A_BOVIN | No assigned EC number | 0.4692 | 0.9582 | 0.9557 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003489001 | SubName- Full=Chromosome undetermined scaffold_144, whole genome shotgun sequence; (763 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00028684001 | • | • | 0.852 | |||||||
 | GSVIVG00020856001 | • | • | • | 0.846 | ||||||
 | GSVIVG00033406001 | • | • | • | 0.845 | ||||||
 | GSVIVG00027410001 | • | • | • | • | • | 0.707 | ||||
 | GSVIVG00036398001 | • | • | 0.453 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 766 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 0.0 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 0.0 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 1e-146 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 3e-75 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 4e-72 | |
| cd11287 | 121 | cd11287, Sec23_C, C-terminal Actin depolymerizatio | 7e-69 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 1e-33 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-22 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 4e-16 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 8e-15 | |
| pfam00626 | 76 | pfam00626, Gelsolin, Gelsolin repeat | 1e-13 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 1e-04 | |
| cd11280 | 88 | cd11280, gelsolin_like, Tandemly repeated domains | 0.003 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 1505 bits (3899), Expect = 0.0
Identities = 564/772 (73%), Positives = 642/772 (83%), Gaps = 20/772 (2%)
Query: 4 MASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKTCT 63
M + E IDGVRM+WNVWP +K+EASKCVIPLAA +P++ P++P LPY PLRC+TC
Sbjct: 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRTCR 60
Query: 64 AALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQN 123
A LN + RVDF AKIWICPFC+QRNHFPPHY++ISETNLP EL+PQYTTVEYTLP
Sbjct: 61 AVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLP----P 116
Query: 124 PNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHE 183
+ P P PVFVFV+DTCMIEEELG +S L +AI LLP+NA+VGL+TFGT HVHE
Sbjct: 117 GSGGAPSP---PVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHE 173
Query: 184 LGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLP 243
LGFS+ SK YVFRGNKE+SKDQ+LEQLGL RR AGG A + +SGV+RFLLP
Sbjct: 174 LGFSECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGI-AGARDGLSSSGVNRFLLP 232
Query: 244 ASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGG 303
ASECE+TLNS L+ELQ D WPV P RP+RCTG ALSVA GLLGAC+PGTGARI+A VGG
Sbjct: 233 ASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGG 292
Query: 304 PCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASAL 363
PCTEGPG IVSKDLSEP+RSHKDLDKDAAP++KKAVKFY+GLAKQLV+QGHVLD+FA +L
Sbjct: 293 PCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSL 352
Query: 364 DQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFE-DGEQSLGLCFNGALEIICSK 422
DQVGVAEMKVAVE+TGGLVVLAESFGHSVFKDS +R+FE DGE SLGL FNG E+ CSK
Sbjct: 353 DQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSK 412
Query: 423 DIKIQGIIGPCTSLEK--------VRLRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNTP 474
D+K+QG IGPC SLEK G AWK+CGLDK T L VFF++++S + + P
Sbjct: 413 DVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQ-SNP 471
Query: 475 GTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLT 534
Q +LQFLT +Q G++ LRVTTVTR+WV+ + SSEELV GFDQE+AAVVMARL
Sbjct: 472 QPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMARLA 530
Query: 535 SLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFV 594
S KME EE FDATRWLDR+LIRLCSKFGDYRKDDP+SF L+P+FSL+PQFMFNLRRSQFV
Sbjct: 531 SHKMETEEEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFV 590
Query: 595 QVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIAADRILLL 654
QVFNNSPDETAYFRM+LNREN+TN+ VMIQP+LISYSFN P+P LLDVASIAADRILLL
Sbjct: 591 QVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDVASIAADRILLL 650
Query: 655 DTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCDQ 714
D+YFSVVIFHG TIAQWR GY NQPEH+AFAQLL AP DA+ II++RFPVPRLVVCDQ
Sbjct: 651 DSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQ 710
Query: 715 HGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQS 766
HGSQARFLLAKLNPSATYN+AN GSDIIFTDDVSLQVF+EHLQRLAVQS
Sbjct: 711 HGSQARFLLAKLNPSATYNSANA-MGGSDIIFTDDVSLQVFMEHLQRLAVQS 761
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat | Back alignment and domain information |
|---|
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986 | 745 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 100.0 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.83 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.74 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.61 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.58 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.52 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.52 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.51 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.48 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.46 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.4 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 98.3 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.29 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.19 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.19 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.16 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.14 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.12 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.11 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.07 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 97.99 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 97.99 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.97 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 97.96 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 97.93 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.88 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.86 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.73 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.71 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.61 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.59 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.58 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.56 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.49 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.48 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.31 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.26 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.18 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.17 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.15 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.09 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 97.0 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 96.86 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 96.81 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.4 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 96.28 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 95.85 | |
| KOG2884 | 259 | consensus 26S proteasome regulatory complex, subun | 94.65 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 94.18 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 94.17 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 93.31 | |
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 92.99 | |
| smart00187 | 423 | INB Integrin beta subunits (N-terminal portion of | 92.45 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 91.71 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 91.28 | |
| PF00362 | 426 | Integrin_beta: Integrin, beta chain; InterPro: IPR | 90.54 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 89.77 | |
| KOG0443 | 827 | consensus Actin regulatory proteins (gelsolin/vill | 85.98 | |
| TIGR01053 | 31 | LSD1 zinc finger domain, LSD1 subclass. This model | 81.89 | |
| KOG2807 | 378 | consensus RNA polymerase II transcription initiati | 81.89 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 81.51 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-166 Score=1455.50 Aligned_cols=751 Identities=74% Similarity=1.218 Sum_probs=694.9
Q ss_pred CCCCCcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCCCCCCCCCCCcccCCCCceecCceeEEcCCceEEecC
Q 004238 4 MASTDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKTCTAALNAFARVDFTAKIWICPF 83 (766)
Q Consensus 4 ~~~~~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~~ip~~~~~p~RC~~C~ayiNp~~~~~~~~~~W~C~~ 83 (766)
|||.+.|+.++||+|||+||.|+.++++++|||||+|+||++.+++|+++++|+||++|+|||||||+|+.+|++|+|||
T Consensus 1 ~~~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~CraylNPf~~~d~~~~~W~C~~ 80 (761)
T PLN00162 1 MDFAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIWICPF 80 (761)
T ss_pred CchhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCCCcCEECCceEEecCCCEEEccC
Confidence 68999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHHHHHHHHHHHHHhcc
Q 004238 84 CYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGL 163 (766)
Q Consensus 84 C~~~N~~p~~y~~~~~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~ 163 (766)
|++.|++|++|..+++.++||||+|+++||||.+|+ |+. ++| .||+|+||||+|..+++++.++++|+++|+.
T Consensus 81 C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~-~~~---~~~---~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~ 153 (761)
T PLN00162 81 CFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP-GSG---GAP---SPPVFVFVVDTCMIEEELGALKSALLQAIAL 153 (761)
T ss_pred CCCCCCCchHhcccCccCCChhhcCCceeEEEECCC-CCC---CCC---CCcEEEEEEecchhHHHHHHHHHHHHHHHHh
Confidence 999999999999888889999999999999999997 654 566 8999999999999999999999999999999
Q ss_pred CCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccCcccccCCCcccCCCCCCCCCC-ccccee
Q 004238 164 LPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPNAFPNSG-VSRFLL 242 (766)
Q Consensus 164 lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~~~~~~~g~~~~~~~~~~~~~p-~~~~l~ 242 (766)
||++++|||||||+.||||+|+.+.+++++||+|+++|+.+|+.+++++.+.+..++.+. +..+....+.| .++||+
T Consensus 154 LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~--~~~~~~~~~~p~~~~fLv 231 (761)
T PLN00162 154 LPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGG--IAGARDGLSSSGVNRFLL 231 (761)
T ss_pred CCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHHhccccccccccccc--cccccccccCCCccceeE
Confidence 999999999999999999999988899999999999999999999998855322111000 00001113445 489999
Q ss_pred ehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCCcccccCCCCCCcc
Q 004238 243 PASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTIVSKDLSEPVR 322 (766)
Q Consensus 243 ~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~r 322 (766)
|++||+..|+++|++|+++.|++++++|+.||+|+||++|..+|+.+.++.||||++|++||||.|||+|+.++.++++|
T Consensus 232 pl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~r 311 (761)
T PLN00162 232 PASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIR 311 (761)
T ss_pred EHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeeccccccccc
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCCchhhHHHHHHHHh
Q 004238 323 SHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFE 402 (766)
Q Consensus 323 s~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~ 402 (766)
+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+.+.|+++|+|+|+
T Consensus 312 sh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~ 391 (761)
T PLN00162 312 SHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFE 391 (761)
T ss_pred CccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhc
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccc-ccceeeeEEEEEecCCceEEEEEcCcccccccc--------cCCCccceeeecCCCCceEEEEEEecCCCCCCC
Q 004238 403 DGEQS-LGLCFNGALEIICSKDIKIQGIIGPCTSLEKVR--------LRGEYYAWKMCGLDKSTCLTVFFDLSSSERLNT 473 (766)
Q Consensus 403 ~~~~~-~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~--------g~~~~~~~~l~~~~~~~s~~~~f~~~~~~~~~~ 473 (766)
+...+ +.+||+|+||||||+|++|++++||++...+++ |.++|+.|+++++++++||+|+|++++..+ ..
T Consensus 392 r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~-~~ 470 (761)
T PLN00162 392 RDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQ-SN 470 (761)
T ss_pred ccccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccc-cC
Confidence 75322 468999999999999999999999998765442 788999999999999999999999998751 00
Q ss_pred CCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCHHHHHhccChhHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 004238 474 PGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAAVVMARLTSLKMEMEEGFDATRWLDRS 553 (766)
Q Consensus 474 ~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~~~i~~~~D~~a~~~llak~a~~~~~~~~~~~~~~~l~~~ 553 (766)
+..+...+||||+++||+.+|+|||||||++++++..+ ++.+++++|||||++++|||+|+.++.+++..|+++||+++
T Consensus 471 ~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~~~-~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~ 549 (761)
T PLN00162 471 PQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRA 549 (761)
T ss_pred CCCCCceEEEEEEEEEEcCCCCEEEEEEccccCccCCC-CHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 11345779999999999999999999999999976422 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCccCCccccchHHHHHHhccccccCCCCCChHHHHHHHHHHccCCHHHHHHhhcccceeeccC
Q 004238 554 LIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFN 633 (766)
Q Consensus 554 l~~~~~~~~~y~~~~~~s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~ 633 (766)
|++++++|+.|+|+++++|+||++|++||+|||+|+||++|+++|.|||||+|+|++++++++++++.||||+|++||++
T Consensus 550 li~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~~ 629 (761)
T PLN00162 550 LIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFN 629 (761)
T ss_pred HHHHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHHHHhcCCCCcEEEEEe
Q 004238 634 SLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVPRLVVCD 713 (766)
Q Consensus 634 ~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~i~~~R~p~p~~~~~~ 713 (766)
++|+|++||+++|++|+|||||+|++|+||+|++|++|+|+|||++|||++|+++|++|+++|++|+.+|||+||+++|+
T Consensus 630 ~~P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~ 709 (761)
T PLN00162 630 GPPEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCD 709 (761)
T ss_pred CCCcceecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhcCCCCcCCcccccCCCcccccCCchHHHHHHHHHHHHhcC
Q 004238 714 QHGSQARFLLAKLNPSATYNNANEIAAGSDIIFTDDVSLQVFIEHLQRLAVQS 766 (766)
Q Consensus 714 ~g~s~~r~l~s~L~p~~~~~~~~~~~~~~~~~~t~~~Sy~~f~~~L~~~i~~~ 766 (766)
||+||||||++||||+++|++.+ ++.+++.|+|||+||+.||+||+|++|++
T Consensus 710 ~~~SqaRfl~~klnPs~~~~~~~-~~~~~~~~~tdd~sl~~f~~~l~~~~v~~ 761 (761)
T PLN00162 710 QHGSQARFLLAKLNPSATYNSAN-AMGGSDIIFTDDVSLQVFMEHLQRLAVQS 761 (761)
T ss_pred CCCcHHHHHHHhcCCcccccCCC-CCCCCCeeecCCcCHHHHHHHHHHHhcCC
Confidence 99999999999999999985532 23467899999999999999999999974
|
|
| >KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR01053 LSD1 zinc finger domain, LSD1 subclass | Back alignment and domain information |
|---|
| >KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 766 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 0.0 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-179 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-179 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 3e-16 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 4e-11 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-10 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 1e-10 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 2e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 1e-09 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 3e-09 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 698 bits (1802), Expect = 0.0
Identities = 362/780 (46%), Positives = 494/780 (63%), Gaps = 31/780 (3%)
Query: 1 MSEMASTDP--EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLR 58
M+ E DGVR +WNVWP +++EA++ V+P+AA +P++ PD+P + Y P+
Sbjct: 5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 64
Query: 59 CK--TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYT 116
C TC A LN +VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++++EY
Sbjct: 65 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 124
Query: 117 LPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFG 176
+ Q P +F++V+DTCM +E+L + ++ ++ LLP A+VGL+TFG
Sbjct: 125 VLRGPQMP----------LIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFG 174
Query: 177 TQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPNAFPNSG 236
VHELG +SK YVFRG K++S Q+ E LGLS A P
Sbjct: 175 RMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATR-----GPQVQQPPP 229
Query: 237 VSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGAR 296
+RFL P + + L LL ELQ D WPV RP R +GVALS+A GLL P TGAR
Sbjct: 230 SNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGAR 289
Query: 297 IVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVL 356
I+ +GGP T+GPG +V +L P+RS D+DKD A + KK K ++ LA + + GHV+
Sbjct: 290 IMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVI 349
Query: 357 DLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRIFE-DGEQSLGLCFNGA 415
D++A ALDQ G+ EMK TGG +V+ +SF S+FK +F+R+F D + F G
Sbjct: 350 DIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGT 409
Query: 416 LEIICSKDIKIQGIIGPCTSLEKVRL--------RGEYYAWKMCGLDKSTCLTVFFDLSS 467
LEI S++IKI G IGPC SL G WK+CGL +T L ++F++ +
Sbjct: 410 LEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVN 469
Query: 468 SERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSSEELVQGFDQESAA 527
N P + +QF+T +Q G+ +RVTT+ R W D+ + + FDQE+AA
Sbjct: 470 QH--NAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAA 527
Query: 528 VVMARLTSLKMEMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFN 587
++MARL + E EEG D RWLDR LIRLC KFG+Y KDDP+SF + +FSL+PQFMF+
Sbjct: 528 ILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFH 587
Query: 588 LRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIA 647
LRRS F+QVFNNSPDE++Y+R R+++T + +MIQP L +YSF+ P+P LLD +SI
Sbjct: 588 LRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSIL 647
Query: 648 ADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAELIIRDRFPVP 707
ADRILL+DT+F ++I+HG TIAQWR GYQ+ PE++ F LL+AP DDA+ I+ RFP+P
Sbjct: 648 ADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMP 707
Query: 708 RLVVCDQHGSQARFLLAKLNPSATYNNANEIAA-GSDIIFTDDVSLQVFIEHLQRLAVQS 766
R + + GSQARFLL+K+NPS T+NN I TDDVSLQVF++HL++LAV S
Sbjct: 708 RYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.64 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.24 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.72 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.34 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.33 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.31 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.26 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.23 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.22 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.2 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.11 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.1 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.05 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.04 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.04 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.03 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.03 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 97.96 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 97.94 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 97.92 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 97.92 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.77 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.61 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.6 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.59 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.12 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 97.12 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 96.77 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 96.46 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 96.24 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 95.77 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.71 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 95.68 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 95.38 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 95.33 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 95.13 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 94.91 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 94.87 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 94.03 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 93.93 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 93.4 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 92.95 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 92.83 | |
| 2iue_A | 212 | Pactolus I-domain; membrane protein, CD, ITC, limb | 91.81 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 91.45 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 91.33 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 90.41 |
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-158 Score=1401.40 Aligned_cols=740 Identities=48% Similarity=0.889 Sum_probs=663.0
Q ss_pred CCCCCCC----CcCCCCeeEeeccccCCCHHHhhhCCCceeEEEccCCCCCCCCCCCCCCcccCC--CCceecCceeEEc
Q 004238 1 MSEMAST----DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT--CTAALNAFARVDF 74 (766)
Q Consensus 1 ~~~~~~~----~~~~~~~vR~t~~~~P~t~~~~~~~~iPlg~~v~P~~~~~~ip~~~~~p~RC~~--C~ayiNp~~~~~~ 74 (766)
|+.|+|. +||+++|||+|||+||.+++++++++|||||+|+||++.+++|+++++|+||++ |+|||||||+|+.
T Consensus 3 ~~~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~ 82 (769)
T 2nut_A 3 MGMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDY 82 (769)
T ss_dssp ----CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEET
T ss_pred CcccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeC
Confidence 4556765 379999999999999999999999999999999999988889999999999999 9999999999999
Q ss_pred CCceEEecCCCCCCCCCcccccCCCCCCCccccCCCceEEEEecCCCCCCCCCCCCCCCCcEEEEEEEcccchHHHHHHH
Q 004238 75 TAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYAR 154 (766)
Q Consensus 75 ~~~~W~C~~C~~~N~~p~~y~~~~~~~~~pEL~p~~~tvey~~~~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~ 154 (766)
+|++|+||||++.|++|++|..+++.++||||.|+++||||++|++| | .||+|+||||+|.+++++++++
T Consensus 83 ~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~-------p---~pp~~vFvIDvS~~a~~l~~l~ 152 (769)
T 2nut_A 83 RAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP-------Q---MPLIFLYVVDTCMEDEDLQALK 152 (769)
T ss_dssp TTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC-------C---CCCEEEEEEECCSCHHHHHHHH
T ss_pred CCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC-------C---CCCEEEEEEECCccHHHHHHHH
Confidence 99999999999999999999988888999999999999999999885 4 7899999999999999999999
Q ss_pred HHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhccccC--cccccCCCcccCCC-CC
Q 004238 155 SELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGLSAS--GRRAAGGYQKAAVP-NA 231 (766)
Q Consensus 155 ~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~~d~--~~~~~~g~~~~~~~-~~ 231 (766)
++|+++|+.||++++|||||||+.||||+++.+.+++++||+|+++|+.+|+++|++++|. |.. ++ .+
T Consensus 153 ~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~---------~~~~~ 223 (769)
T 2nut_A 153 ESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQA---------TRGPQ 223 (769)
T ss_dssp HHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-----------------------
T ss_pred HHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccc---------ccccc
Confidence 9999999999999999999999999999999998999999999999999999889988652 100 00 01
Q ss_pred CCC-CCcccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCCCCccEEEEEeCCCCCCCCc
Q 004238 232 FPN-SGVSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPG 310 (766)
Q Consensus 232 ~~~-~p~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~~~gGrIi~f~sg~pt~GpG 310 (766)
+.| .|.++||+|++||++.|+++|++|+++.|++++++++.||+|+||++|..+|+.++++.||||++|++|+||.|||
T Consensus 224 ~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG 303 (769)
T 2nut_A 224 VQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPG 303 (769)
T ss_dssp -----CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSS
T ss_pred ccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCC
Confidence 344 6679999999999999999999999988888889999999999999999999987788999999999999999999
Q ss_pred ccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcchhhhhcccceEEEeCCCCc
Q 004238 311 TIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGH 390 (766)
Q Consensus 311 ~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~f~~ 390 (766)
+|+.+++++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 304 ~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~ 383 (769)
T 2nut_A 304 MVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNT 383 (769)
T ss_dssp CCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSS
T ss_pred CCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCch
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcccc-ccceeeeEEEEEecCCceEEEEEcCcccccccc--------cCCCccceeeecCCCCceEEE
Q 004238 391 SVFKDSFKRIFEDGEQS-LGLCFNGALEIICSKDIKIQGIIGPCTSLEKVR--------LRGEYYAWKMCGLDKSTCLTV 461 (766)
Q Consensus 391 ~~~~~~l~~~l~~~~~~-~~~~~~a~l~vr~S~gl~v~~~~G~~~~~~~~~--------g~~~~~~~~l~~~~~~~s~~~ 461 (766)
++|++++++.|++...+ +.+||+|+||||||+|++|++++||+++.++|+ |+++++.|+++++++++||+|
T Consensus 384 ~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v 463 (769)
T 2nut_A 384 SLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAI 463 (769)
T ss_dssp HHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEE
T ss_pred hhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEE
Confidence 99999999999875432 369999999999999999999999999775543 688999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCcEEEEEEEEeecCCCcEEEEEEeeccccccCCCCH---HHHHhccChhHHHHHHHHHHHHHh
Q 004238 462 FFDLSSSERLNTPGTINPQLYLQFLTSFQSPEGRSVLRVTTVTRQWVDSAVSS---EELVQGFDQESAAVVMARLTSLKM 538 (766)
Q Consensus 462 ~f~~~~~~~~~~~~~~~~~~~iQ~al~Yt~~~G~rriRV~T~~l~vt~~~~~~---~~i~~~~D~~a~~~llak~a~~~~ 538 (766)
+|++++..+.+ ..+...+|||+|++||+.+|+|||||||+++++++ ++ .++|+++|+||++++|+|+|+.++
T Consensus 464 ~f~~~~~~~~~--l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~---~~~~~~~v~~~~Dqea~~~llar~a~~~~ 538 (769)
T 2nut_A 464 YFEVVNQHNAP--IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWAD---AQTQIQNIAASFDQEAAAILMARLAIYRA 538 (769)
T ss_dssp EEEEC------------CCEEEEEEEEEEETTSCEEEEEEEEEECBCC---GGGHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred EEEecCccccc--cCCCCeEEEEEEEEEECCCCCEEEEEEeecccccC---CcccHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99999874210 12468899999999999999999999999999998 54 599999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhcccccCCCCCccCCccccchHHHHHHhccccccCCCCCChHHHHHHHHHHccCCHHH
Q 004238 539 EMEEGFDATRWLDRSLIRLCSKFGDYRKDDPASFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENITN 618 (766)
Q Consensus 539 ~~~~~~~~~~~l~~~l~~~~~~~~~y~~~~~~s~~lp~~l~~lP~~~~~L~ks~~l~~~~~s~Der~~~~~~l~~~~~~~ 618 (766)
.+++..|+++||+++|++++++|+.|||+++++|+||++|++||+|||+|+||++|+.++++||||+|++++++++++.+
T Consensus 539 ~~~~~~d~~~~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~ 618 (769)
T 2nut_A 539 ETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQ 618 (769)
T ss_dssp TTC---CHHHHHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccceeeccCCCCcccccccccccCCeEEEEeCCcEEEEEECCchhHHhhcCCCCChhhhHHHHHhhCcHHHHHH
Q 004238 619 AAVMIQPSLISYSFNSLPQPALLDVASIAADRILLLDTYFSVVIFHGMTIAQWRNMGYQNQPEHQAFAQLLRAPHDDAEL 698 (766)
Q Consensus 619 ~~~~iyP~L~~~~~~~~p~~~~Ls~~~l~~~~i~llD~g~~i~i~~G~~v~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 698 (766)
++.||||+||+||.++.|++++||+++|.++||||||+|++++||+|++|++|+++||+++|||++|+++|++|+.+|++
T Consensus 619 ~~~~iyP~L~~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~ 698 (769)
T 2nut_A 619 SLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQE 698 (769)
T ss_dssp HHHHHSCEEEEECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCEEEeccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHH
Confidence 99999999999998878999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEeCCCChHHHHHHhhcCCCCcCCcccccCC---CcccccCCchHHHHHHHHHHHHhcC
Q 004238 699 IIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEIAAG---SDIIFTDDVSLQVFIEHLQRLAVQS 766 (766)
Q Consensus 699 i~~~R~p~p~~~~~~~g~s~~r~l~s~L~p~~~~~~~~~~~~~---~~~~~t~~~Sy~~f~~~L~~~i~~~ 766 (766)
|+++|+|+|++++|+||+||+|||++||+|+.+|++ ++|+| ++.++|||+||++||+||+|+||++
T Consensus 699 i~~~R~p~Pr~i~~~~g~sqaRfl~sklnps~~~~~--~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v~~ 767 (769)
T 2nut_A 699 ILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNN--MYAWGQESGAPILTDDVSLQVFMDHLKKLAVSS 767 (769)
T ss_dssp HHHHSSSCCEEEEEETTCSTTHHHHHHCC------------------------CCSHHHHHHHHHHHHSSC
T ss_pred HHhcCCCCCeEEEEcCCCcHHHHHHHhcCCcccccC--CCcCCCcCCccccccccCHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999875 33444 7899999999999999999999873
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 766 | ||||
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 5e-98 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 3e-75 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 1e-57 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 2e-57 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 7e-39 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 2e-12 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 5e-27 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 7e-24 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 4e-16 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 302 bits (775), Expect = 5e-98
Identities = 99/270 (36%), Positives = 154/270 (57%)
Query: 133 LSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKV 192
+ P+F FV+D E L + + ++ LLP NA++GL+T+G +H+L + +
Sbjct: 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRC 60
Query: 193 YVFRGNKEISKDQVLEQLGLSASGRRAAGGYQKAAVPNAFPNSGVSRFLLPASECEYTLN 252
VFRG++E + + E L N ++RF LP + E+ LN
Sbjct: 61 NVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLN 120
Query: 253 SLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLPGTGARIVALVGGPCTEGPGTI 312
LL+ L PDQW V RP R TG AL++A+ LL C ARI+ GP T PG I
Sbjct: 121 QLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLI 180
Query: 313 VSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEMK 372
V+ +L +P+RSH D+D D A +KKA KFY+ +A+++ + GH +D+FA DQ+G++EMK
Sbjct: 181 VNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMK 240
Query: 373 VAVEKTGGLVVLAESFGHSVFKDSFKRIFE 402
+ TGG+++L ++F ++FK S+ R+F
Sbjct: 241 QLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 270
|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.87 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.84 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.82 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.76 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.6 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.44 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.1 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.03 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 97.98 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.9 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.78 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.78 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 97.75 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.65 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.64 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.63 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.52 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.31 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.28 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 97.1 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 96.97 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 96.92 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.71 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 94.97 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-53 Score=445.74 Aligned_cols=270 Identities=36% Similarity=0.686 Sum_probs=240.5
Q ss_pred CCcEEEEEEEcccchHHHHHHHHHHHHHhccCCCCcEEEEEEECCeEEEEEcCCCCCcceeEecCCcccchhhHHhhhcc
Q 004238 133 LSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEISKDQVLEQLGL 212 (766)
Q Consensus 133 ~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~lp~~~~VglItf~~~V~~~~l~~~~~~~~~v~~g~~~~~~~~l~~~l~~ 212 (766)
.||+||||||+|.++++++.++++|+++|+.||++++|||||||+.||||++++...++.+||+|+++|+.+++.+++..
T Consensus 1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~ 80 (271)
T d2qtva3 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTG 80 (271)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHC
T ss_pred CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhc
Confidence 48999999999999999999999999999999999999999999999999999888899999999999999998887755
Q ss_pred ccCcccccCCCcccCCCCCCCCCC-cccceeehhhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHhhccCC
Q 004238 213 SASGRRAAGGYQKAAVPNAFPNSG-VSRFLLPASECEYTLNSLLDELQPDQWPVAPRTRPSRCTGVALSVATGLLGACLP 291 (766)
Q Consensus 213 ~d~~~~~~~g~~~~~~~~~~~~~p-~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~AL~~A~~ll~~~~~ 291 (766)
........... .-....++.+.| .++|++|++||++.|+++|++|++++|++++++++.||+|+||++|..+|+++..
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~ 159 (271)
T d2qtva3 81 QKPTGPGGAAS-HLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK 159 (271)
T ss_dssp CC------------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccc-ccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhcc
Confidence 42211000000 000011234556 4899999999999999999999999888889999999999999999999997777
Q ss_pred CCccEEEEEeCCCCCCCCcccccCCCCCCccCCCCCCcCcCccchhHHHHHHHHHHHHHHcCcEEEEEEecCCccChhcc
Q 004238 292 GTGARIVALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPFFKKAVKFYDGLAKQLVSQGHVLDLFASALDQVGVAEM 371 (766)
Q Consensus 292 ~~gGrIi~f~sg~pt~GpG~l~~~~~~~~~rs~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l 371 (766)
+.||||++|++|+||.|||+|+.++.++++|+|+|++++++++++++.+||++||.+|+++||+||+|+++.+|+|+++|
T Consensus 160 ~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~~l 239 (271)
T d2qtva3 160 NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEM 239 (271)
T ss_dssp TSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHHHH
T ss_pred CCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhhhhcccceEEEeCCCCchhhHHHHHHHHhh
Q 004238 372 KVAVEKTGGLVVLAESFGHSVFKDSFKRIFED 403 (766)
Q Consensus 372 ~~l~~~TGG~v~~~~~f~~~~~~~~l~~~l~~ 403 (766)
++|++.|||.+++|++|+.+.|+++|+|+|+|
T Consensus 240 ~~l~~~TGG~v~~~~~F~~~~f~~~l~r~~~r 271 (271)
T d2qtva3 240 KQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 271 (271)
T ss_dssp THHHHTTTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred HhHHhhCCceEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999864
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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