Citrus Sinensis ID: 004242
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.962 | 0.973 | 0.503 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.969 | 0.958 | 0.443 | 1e-176 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.852 | 0.893 | 0.403 | 1e-140 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.883 | 0.903 | 0.380 | 1e-125 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.580 | 0.552 | 0.278 | 1e-28 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.573 | 0.223 | 0.249 | 5e-12 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.586 | 0.236 | 0.255 | 6e-11 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.660 | 0.266 | 0.235 | 9e-11 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.586 | 0.236 | 0.242 | 8e-10 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.498 | 0.332 | 0.242 | 2e-08 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/769 (50%), Positives = 507/769 (65%), Gaps = 32/769 (4%)
Query: 6 FLLLLVLTATTSIASIGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQED 65
F LLL L +S Q TY++HM KS++ ++ S +Y++ + SI+ +
Sbjct: 11 FFLLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLHS--NWYDSSLRSISDSA----- 63
Query: 66 QEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLG 125
++LY YENAI GFS +L+ ++ SL T G +S P+ LHTT +P FLG
Sbjct: 64 --------ELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLG 115
Query: 126 L-ESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSN 184
L E L+ DV+VGV+DTG+WPE ++ D G P+PS WKGGCE GT F+ S
Sbjct: 116 LDEHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASL 175
Query: 185 CNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLAR 244
CN KLIGAR F +GYES +G I+E+ + RSPRD GHGTHT+STAAG++V A+L G A
Sbjct: 176 CNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYAS 235
Query: 245 GKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVA 304
G A GM +R+A YK CW GC SSDILAAIDKA+AD V+VLS+SLGG YYRD VA
Sbjct: 236 GTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVA 295
Query: 305 IASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEG 364
I +F A + G+ VSCSAGN+GPS S++ N APWI TV A DR FPA+ LGNG +F G
Sbjct: 296 IGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTG 355
Query: 365 SSLYSGKG--SKQLPLVF-GKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGE 421
SL+ G+ K LP ++ G + + C+ G+L + VKGKIV+C RG+N+R KG+
Sbjct: 356 VSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGD 415
Query: 422 QVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKG 481
VK AGG GM+L N+ GEEL+ADAH+LPA T+G AG ++ YV + PTASI G
Sbjct: 416 VVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILG 475
Query: 482 TVFG-NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLF 540
TV G P+PV+A+FSSRGP+ + +++KPD+ APGVNILAAW P+ L SD RRV F
Sbjct: 476 TVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEF 535
Query: 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG-GSSDT 599
NIISGTSMSCPHVSGLAALLKSVH +WS AAI+SALMTTAY P+ D+ G T
Sbjct: 536 NIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPST 595
Query: 600 PLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPS 659
P F G+GHV P +A++PGLIYD+ TEDYL +LC+LNYTS Q+ + N+TC
Sbjct: 596 P----FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSK 651
Query: 660 AFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKV-EEPNGVLVTITPPI 718
++ LNYPSFAVN G + +Y R+VT+VG + TY+VKV E GV +++ P +
Sbjct: 652 SYSVADLNYPSFAVNVDG---VGAYKYTRTVTSVGGA-GTYSVKVTSETTGVKISVEPAV 707
Query: 719 LSFQKIGEILSYKVTFV--SLRGASNESFGSLTWVSGKYAVKSPIAVTW 765
L+F++ E SY VTF S + + + SFGS+ W GK+ V SP+A++W
Sbjct: 708 LNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 348/785 (44%), Positives = 474/785 (60%), Gaps = 42/785 (5%)
Query: 6 FLLLLVLTATTSIASIGKQTTYVIHM----DKSKIAANHSPGSVRQFYEAVIDSINKFSS 61
FL ++ L +S + I ++ TY++ + + +K A+ + EAV+ +
Sbjct: 7 FLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEE 66
Query: 62 QQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSP 121
++LY+Y +AI GF+A+L+ + + L ++ PD +L + TTYS
Sbjct: 67 PSS---------RLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSY 117
Query: 122 HFLGLES--GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTK 179
FLGL+ G+W + + I+GV+DTG+WPE +F DTGMP +P +WKG C+EG
Sbjct: 118 KFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGES 177
Query: 180 FSQSNCNNKLIGARAFFKGYE---SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVAN 236
FS S+CN KLIGAR F +G+ S N +Y S RD+ GHGTHTAST G+ V+
Sbjct: 178 FSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSM 237
Query: 237 ANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSR 296
AN+ G G A GM + IA YK CW GC SSDILAAID A+ D VDVLSLSLGG
Sbjct: 238 ANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPI 297
Query: 297 PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356
P Y DT+AI +F A + G+ V C+AGN+GP S+V NTAPW+ T+ A DR FPA+V+L
Sbjct: 298 PLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRL 357
Query: 357 GNGHSFEGSSLYSGKGSK----QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRG 412
NG G SLY GKG K ++ +++ T G G+E+C+ GSL R+ ++GK+VIC RG
Sbjct: 358 ANGKLLYGESLYPGKGIKNAGREVEVIY-VTGGDKGSEFCLRGSLPREEIRGKMVICDRG 416
Query: 413 LNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKR 472
+N R+ KGE VK AGG M+L N++ EE D H+LPA +G + +K YVN+T +
Sbjct: 417 VNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVK 476
Query: 473 PTASIVFKGTVFGNP-APVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSML 531
P A I+F GTV G AP +A FS+RGPSL ++KPD+ APGVNI+AAWP P+ L
Sbjct: 477 PKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGL 536
Query: 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIA 591
D RRV F ++SGTSMSCPHVSG+ AL++S + +WS AAIKSALMTTA + + I
Sbjct: 537 PYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIK 596
Query: 592 DVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG 651
D + P A FA G+GHV+P+ A +PGL+Y+I DY+ YLC+L +T +
Sbjct: 597 D----GNKP-AGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHK 651
Query: 652 NFTCPNPSAFHPG-KLNYPSFAVNFK-GNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNG 709
N +C +PG LNYPS AV FK G M R VTNVG+ Y+V V+ P G
Sbjct: 652 NVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEM---ITRRVTNVGSPNSIYSVNVKAPEG 708
Query: 710 VLVTITPPILSFQKIGEILSYKVTFV---SLRGASNESF--GSLTWVSGK---YAVKSPI 761
+ V + P L F+ + + LSY+V FV RG SF G LTWV+ V+SPI
Sbjct: 709 IKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPI 768
Query: 762 AVTWQ 766
+VT +
Sbjct: 769 SVTLK 773
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/703 (40%), Positives = 418/703 (59%), Gaps = 50/703 (7%)
Query: 72 PPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIG 131
P +L+ Y+ + +GF+ KL+ ++ + + +++G +S +E+ LHTT S FLG +
Sbjct: 66 PESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFP--LT 123
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+ + + +++VGV+DTGIWPE +F D G P P +WKG CE F CN K+IG
Sbjct: 124 VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIG 180
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
AR++ +GR D PRD GHGTHTASTAAG +V+ ANL+GL G A G
Sbjct: 181 ARSYH------IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGV 234
Query: 252 YTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSS-RPYYRDTVAIASFGA 310
+RIAAYK CW+ GCS +DILAA D A+ADGVD++SLS+GG++ R Y+ D +AI SF A
Sbjct: 235 PLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHA 294
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370
+ G+ S SAGN GP+ T + +PW+++VAAS DR F V++GNG SF+G S+ +
Sbjct: 295 VERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTF 354
Query: 371 KGSKQLPLVFGKTAGVSG-----AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVK- 424
++ PLV G+ +G + +C + S+N L+KGKIV+C+ G E K
Sbjct: 355 D-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF----GPHEFFKS 409
Query: 425 LAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVF 484
L G AG+L+ ++ ++ AD++ LP++ L + A +Y+ S + P A+I T+
Sbjct: 410 LDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 465
Query: 485 GNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIIS 544
APV+ SFSSRGP+ DVIKPD++ PGV ILAAWP+ ++ R LFNIIS
Sbjct: 466 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIR---RNTLFNIIS 522
Query: 545 GTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATA 604
GTSMSCPH++G+A +K+ + WS AAIKSALMTTA +N R +P A+
Sbjct: 523 GTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE------------ 570
Query: 605 FAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPG 664
FA+GSGHV+P A PGL+YD DY+ +LC Y + + G C + +
Sbjct: 571 FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVW 630
Query: 665 KLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKI 724
LNYPSF ++ + + + + R++T+V TY + P G+ +++ P +LSF +
Sbjct: 631 DLNYPSFGLSVSPS-QTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGL 689
Query: 725 GEILSYKVTFVSLRGASNESF---GSLTWVSGKYAVKSPIAVT 764
G+ S+ +T +RG S + F SL W G + V+SPI +T
Sbjct: 690 GDRKSFTLT---VRG-SIKGFVVSASLVWSDGVHYVRSPITIT 728
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 278/730 (38%), Positives = 416/730 (56%), Gaps = 53/730 (7%)
Query: 50 EAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATP 109
E + IN SS QE+ + +Y+Y A + F+AKLS + K + ++ +S +
Sbjct: 51 ETIKTHINLLSSLNISQEEAKE--RKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSR 108
Query: 110 DELLTLHTTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSR 169
++ LHTT S F+GL + +DVI+GV+DTGI P+ +F D G+ P P++
Sbjct: 109 NQYRKLHTTKSWDFVGLP--LTAKRHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAK 166
Query: 170 WKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTA 229
WKG C F+ CNNK+IGA+ F G + RSP D GHGTHT+ST
Sbjct: 167 WKGSCGPYKNFT--GCNNKIIGAKYFKHDGNVPAGEV------RSPIDIDGHGTHTSSTV 218
Query: 230 AGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSL-GCSSSDILAAIDKAVADGVDVLS 288
AG +VANA+L+G+A G A G ++R+A YK CW+ GC+ DILA + A+ DGV+++S
Sbjct: 219 AGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIIS 278
Query: 289 LSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDR 348
+S+GG Y D++++ SF A + G+ SAGN GPS TV N PWI+TVAAS DR
Sbjct: 279 ISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDR 338
Query: 349 SFPAIVKLGNGHSFEGS--SLYSGKGSKQLPLVFGKTAGVSG-----AEYCINGSLNRKL 401
+F + + LGNG SF G S++S K +K PLV G A + A YC + SL+RK
Sbjct: 339 TFKSKIDLGNGKSFSGMGISMFSPK-AKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKK 397
Query: 402 VKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL--PAATLGASA 459
VKGK+++C+ G G +K GGAG ++++ ++ + +A + PA ++ +S
Sbjct: 398 VKGKVMVCRMGGG---GVESTIKSYGGAGAIIVS-----DQYLDNAQIFMAPATSVNSSV 449
Query: 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL 519
G + +Y+NST R ++++ K PAP +ASFSSRGP+ ++KPD+ APG++IL
Sbjct: 450 GDIIYRYINST-RSASAVIQKTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDIL 508
Query: 520 AAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579
AA+ S + L D + F I+SGTSM+CPHV+G+AA +KS H DW+ AAIKSA++T+
Sbjct: 509 AAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITS 568
Query: 580 AYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLN 639
A ++ R + A+ FA+G G ++P A+ PGL+YD+ Y+ +LC
Sbjct: 569 AKPISRRVNKDAE------------FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEG 616
Query: 640 YTSLQLALFAG-GNFTCPNPSAFHPG----KLNYPSFAVNFKGNVKNMSLEYERSVTNVG 694
Y + LA G + +C S+ PG LNYP+ + + + + R VTNVG
Sbjct: 617 YNATTLAPLVGTRSVSC---SSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVG 673
Query: 695 TSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESF-GSLTWVSG 753
Y V P GV +T+ P LSF K + S+KV + + + G L W S
Sbjct: 674 PPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSP 733
Query: 754 KYAVKSPIAV 763
+++V+SPI +
Sbjct: 734 RHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 150/539 (27%), Positives = 233/539 (43%), Gaps = 94/539 (17%)
Query: 79 YENAISGFSAKLSTKQLKSLETVDGFLSATP----------DELLTL-HTTYSPHFLGLE 127
YE SGFS KL ++ L V + P D+ +T+ SP
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 128 SGIGL---WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSN 184
IG WD K + V +IDTG+ H P + + G +G F ++
Sbjct: 166 PYIGANDAWDLGYTGKGIKVAIIDTGVEYNH--------PDLKKNF--GQYKGYDFVDND 215
Query: 185 CNNKLIGARAFFKGYESVVGRINETVDYRSPR-DAQGHGTHTASTAAGNIVANANLFGLA 243
+ K E+ G PR +A HGTH A T A N
Sbjct: 216 YDPK-----------ETPTG---------DPRGEATDHGTHVAGTVAAN----------- 244
Query: 244 RGKAAGMRYTSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGS-SRPYYRD 301
G G+ + + AY+ G ++ +++A +++AV DG DV++LSLG S + P +
Sbjct: 245 -GTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWAT 303
Query: 302 TVAIASFGATQSGVFVSCSAGNSGPSISTVDN--TAPWIMTVAASY--------TDRSFP 351
+ A+ A GV S GNSGP+ TV + T+ ++V A+ T S+
Sbjct: 304 STALD--WAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLNEYAVTFGSYS 361
Query: 352 AIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQR 411
+ +G + +L +K++ LV AG+ A+ K + GK+ + +R
Sbjct: 362 SAKVMGYNKEDDVKAL----NNKEVELV---EAGIGEAK-----DFEGKDLTGKVAVVKR 409
Query: 412 GLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTK 471
G + K + K AG GM++ N+ E +P L G+ K V++ K
Sbjct: 410 GSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGE---KLVSALK 466
Query: 472 RPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSML 531
FK TV +A FSSRGP ++ +IKPD++APGVNI++ P T P
Sbjct: 467 AGETKTTFKLTVSKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTIP-THDP--- 521
Query: 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590
D + GTSM+ PH++G A++K WS IK+A+M TA TL + + +
Sbjct: 522 ---DHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 142/570 (24%), Positives = 227/570 (39%), Gaps = 131/570 (22%)
Query: 78 AYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI---GLWD 134
+Y ++GFS K+ + L+ + G + +TL Y P S +W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGV------KTVTLAKVYYPTDAKANSMANVQAVWS 202
Query: 135 ATNLAKD-VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGAR 193
+ +V VID+GI P H + + V K E KF+ + + + ++
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDV-KLTKSDVE---KFTDTAKHGRYFNSK 258
Query: 194 AFFKGYESVVGR---INETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
+ G+ ++TVD + HG H AG I AN A+ G+
Sbjct: 259 VPY-GFNYADNNDTITDDTVDEQ-------HGMH----VAGIIGANGTGDDPAK-SVVGV 305
Query: 251 RYTSRIAAYKACWSLGCS----SSDILAAIDKAVADGVDVLSLSLGGSS-RPYYRDTVAI 305
+++ A K + S S+ +++AI+ + G DVL++SLG S D
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELA 365
Query: 306 ASFGATQSGVFVSCSAGNSGPS-------------------------------ISTVDNT 334
A A +SG SAGNSG S +++ +NT
Sbjct: 366 AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENT 425
Query: 335 APWIMTVAASYTD----RSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSG-- 388
++T A + TD + P ++L + H F GS K+ +V + +S
Sbjct: 426 D--VITQAVTITDGTGLQLGPETIQLSS-HDFTGSF-----DQKKFYIVKDASGNLSKGA 477
Query: 389 -AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL--IA 445
A+Y + KGKI I +RG S K + + AG AG++++N+D + IA
Sbjct: 478 LADYTAD-------AKGKIAIVKRGEFSFDDKQKYAQAAGAAGLIIVNTDGTATPMTSIA 530
Query: 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNP-----APVIASFSSRGPS 500
P L + G+ + +V T P S+ K T+ P ++ F+S GP
Sbjct: 531 LTTTFPTFGLSSVTGQKLVDWV--TAHPDDSLGVKITLAMLPNQKYTEDKMSDFTSYGP- 587
Query: 501 LVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALL 560
V + KPD+TAPG NI W S + +SGTSM+ P ++G ALL
Sbjct: 588 -VSNLSFKPDITAPGGNI---W----------STQNNNGYTNMSGTSMASPFIAGSQALL 633
Query: 561 KSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590
K LNN+N+P
Sbjct: 634 KQA-------------------LNNKNNPF 644
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 143/560 (25%), Positives = 226/560 (40%), Gaps = 111/560 (19%)
Query: 78 AYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI---GLWD 134
+Y ++GFS K+ + L+ + G + +TL Y P S +W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGV------KTVTLAKVYYPTDAKANSMANVQAVWS 202
Query: 135 ATNLAKD-VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGAR 193
+ +V VID+GI P H + + V K E KF+ + + + ++
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDV-KLTKSDVE---KFTDTAKHGRYFNSK 258
Query: 194 AFFKGYESVVGR---INETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
+ G+ ++TVD + HG H AG I AN A+ G+
Sbjct: 259 VPY-GFNYADNNDTITDDTVDEQ-------HGMH----VAGIIGANGTGDDPAK-SVVGV 305
Query: 251 RYTSRIAAYKACWSLGCS----SSDILAAIDKAVADGVDVLSLSLGGSS-RPYYRDTVAI 305
+++ A K + S SS +++AI+ + G DVL++SLG S D
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELA 365
Query: 306 ASFGATQSGVFVSCSAGNSGPSISTV-----------DN-------TAPWIMTVA-ASYT 346
A A +SG SAGNSG S S DN T+ TVA A T
Sbjct: 366 AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENT 425
Query: 347 DRSFPAI-------VKLGNGHSFEGSSLYSGK-GSKQLPLVFGKTAGVSG---AEYCING 395
D A+ ++LG G S+ ++G K+ +V + +S A+Y +
Sbjct: 426 DVITQAVTITDGTGLQLGPGTIQLSSNDFTGSFDQKKFYVVKDASGNLSKGALADYTAD- 484
Query: 396 SLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATL 455
KGKI I +RG S K + + AG AG++++N+D + + A T
Sbjct: 485 ------AKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTF 538
Query: 456 GASA--GKAVKKYVNSTKRPTASIVFKGTVFGNP---APVIASFSSRGPSLVGHDVIKPD 510
G S+ G+ + +V + + + T+ N ++ F+S GP V + KPD
Sbjct: 539 GLSSVTGQKLVDWVTAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGP--VSNLSFKPD 596
Query: 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTA 570
+TAPG NI W S + +SGTSM+ P ++G ALLK
Sbjct: 597 ITAPGGNI---W----------STQNNNGYTNMSGTSMASPFIAGSQALLKQA------- 636
Query: 571 AIKSALMTTAYTLNNRNSPI 590
LNN+N+P
Sbjct: 637 ------------LNNKNNPF 644
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 147/623 (23%), Positives = 246/623 (39%), Gaps = 117/623 (18%)
Query: 21 IGKQTTYVIHMDKSKIAANHSPGSVRQFYEA---VIDSINKFSSQQEDQE---QETTPPQ 74
+ +Q TYV + + A G++R Y + + NK + Q + ++ T
Sbjct: 86 VQQQDTYVDVIVQMSAAPASENGTLRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQQT 145
Query: 75 ILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI---G 131
+Y ++GFS K+ + L+ + G + +TL Y P S
Sbjct: 146 AGESYGYVVNGFSTKVRVVDIPKLKQIAGV------KTVTLAKVYYPTDAKANSMANVQA 199
Query: 132 LWDATNLAKD-VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
+W + +V VIDTGI P H + + V K E KF+ + + +
Sbjct: 200 VWSNYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDV-KLTKYDVE---KFTDTAKHGRYF 255
Query: 191 GARA--FFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAA 248
++ F ++ ++TVD + HG H A + AN G K+
Sbjct: 256 TSKVPYGFNYADNNDTITDDTVDEQ-------HGMHVAG------IIGANGTGDDPTKSV 302
Query: 249 -GMRYTSRIAAYKACWSLGCS----SSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTV 303
G+ +++ A K + S S+ +++AI+ + G DVL++SLG S +
Sbjct: 303 VGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDP 362
Query: 304 AIASF-GATQSGVFVSCSAGNSGPSISTV-----------DN-------TAPWIMTVAAS 344
IA+ A +SG SAGNSG S S DN T+ TVA++
Sbjct: 363 EIAAVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTPGTSRGATTVASA 422
Query: 345 YTDRSFPAIVKLGNGHSFE--------GSSLYSGKGSKQLPLVFGKTAGV----SGAEYC 392
V + +G + S+ ++G ++ V +G + A+Y
Sbjct: 423 ENTDVISQAVTITDGKDLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGDLSKGAAADYT 482
Query: 393 INGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL--IADAHVL 450
+ KGKI I +RG + K + + AG AG++++N+D L I
Sbjct: 483 AD-------AKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTF 535
Query: 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNP---APVIASFSSRGPSLVGHDVI 507
P L + G+ + +V + + + T+ N ++ F+S GP V +
Sbjct: 536 PTFGLSSKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYGP--VSNLSF 593
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDW 567
KPD+TAPG NI W S + +SGTSM+ P ++G ALLK
Sbjct: 594 KPDITAPGGNI---W----------STQNNNGYTNMSGTSMASPFIAGSQALLKQA---- 636
Query: 568 STAAIKSALMTTAYTLNNRNSPI 590
LNN+N+P
Sbjct: 637 ---------------LNNKNNPF 644
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 136/560 (24%), Positives = 223/560 (39%), Gaps = 111/560 (19%)
Query: 78 AYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI---GLWD 134
+Y ++GFS K+ + L+ + G + +TL Y P S +W
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGV------KTVTLAKVYYPTDAKANSMANVQAVWS 202
Query: 135 ATNLAKD-VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGAR 193
+ +V VID+GI P H + + V K E KF+ + + + ++
Sbjct: 203 NYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDV-KLTKSDVE---KFTDTAKHGRYFNSK 258
Query: 194 AFFKGYESVVGR---INETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
+ G+ ++TVD + HG H AG I AN A+ G+
Sbjct: 259 VPY-GFNYADNNDTITDDTVDEQ-------HGMH----VAGIIGANGTGDDPAK-SVVGV 305
Query: 251 RYTSRIAAYKACWSLGCS----SSDILAAIDKAVADGVDVLSLSLGGSS-RPYYRDTVAI 305
+++ A K + S S+ +++AI+ + G DVL++SLG S D
Sbjct: 306 APEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELA 365
Query: 306 ASFGATQSGVFVSCSAGNSGPSISTV-----------DN-------TAPWIMTVAASYTD 347
A A +SG SAGNSG S S DN T+ TVA++
Sbjct: 366 AVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENT 425
Query: 348 RSFPAIVKLGNGHSFE--------GSSLYSGK-GSKQLPLVFGKTAGVSG---AEYCING 395
V + +G + S+ ++G K+ +V + +S A+Y +
Sbjct: 426 DVITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQKKFYVVKDASGNLSKGKVADYTAD- 484
Query: 396 SLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATL 455
KGKI I +RG + K + + AG AG++++N+D + + A T
Sbjct: 485 ------AKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDGTATPVTSMALTTTFPTF 538
Query: 456 GASA--GKAVKKYVNSTKRPTASIVFKGTVFGNP---APVIASFSSRGPSLVGHDVIKPD 510
G S+ G+ + +V + + + T+ N ++ F+S GP V + KPD
Sbjct: 539 GLSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYGP--VSNLSFKPD 596
Query: 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTA 570
+TAPG NI W S + +SGTSM+ P ++G ALLK
Sbjct: 597 ITAPGGNI---W----------STQNNNGYTNMSGTSMASPFIAGSQALLKQA------- 636
Query: 571 AIKSALMTTAYTLNNRNSPI 590
LNN+N+P
Sbjct: 637 ------------LNNKNNPF 644
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 109/449 (24%), Positives = 171/449 (38%), Gaps = 67/449 (14%)
Query: 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201
+V VID G H A++ T + K E+ K + A++ Y S
Sbjct: 124 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDY-S 182
Query: 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANL-FGLARGKAAGMRYTSRIAAYK 260
G+ VD Q HGTH + +GN + + L R+ +
Sbjct: 183 KDGKT--AVD-------QEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRV---E 230
Query: 261 ACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYR--DTVAIASFGATQSGVFVS 318
L + + AI AV G V+++S G ++ Y D A A GV +
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 319 CSAGNSG-------------PSISTVDN--TAPWIMTVAASYTDRSFP--AIVKLGNGHS 361
SAGN P V A +TVA+ D+ A VK +
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 350
Query: 362 FEGSSLYSGKGSKQLPLVFG-KTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKG 420
E L + + + G+ ++ K VKGKI + +RG K
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDF--------KDVKGKIALIERGDIDFKDKI 402
Query: 421 EQVKLAGGAGMLLLNSDKEGEEL-IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVF 479
K AG G+L+ ++ +G + + + +PAA + G +K + P +I F
Sbjct: 403 ANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------ENPQKTITF 456
Query: 480 KGTVFGNPAP---VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDR 536
T P ++ FSS G + G+ IKPD+ APG +IL++
Sbjct: 457 NATPKVLPTASGTKLSRFSSWGLTADGN--IKPDIAAPGQDILSSVANNK---------- 504
Query: 537 RVLFNIISGTSMSCPHVSGLAALLKSVHE 565
+ +SGTSMS P V+G+ LL+ +E
Sbjct: 505 ---YAKLSGTSMSAPLVAGIMGLLQKQYE 530
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| 224127486 | 757 | predicted protein [Populus trichocarpa] | 0.983 | 0.994 | 0.716 | 0.0 | |
| 255541416 | 744 | Xylem serine proteinase 1 precursor, put | 0.959 | 0.987 | 0.708 | 0.0 | |
| 356520481 | 763 | PREDICTED: subtilisin-like protease-like | 0.989 | 0.993 | 0.675 | 0.0 | |
| 356506320 | 1024 | PREDICTED: subtilisin-like protease-like | 0.992 | 0.742 | 0.680 | 0.0 | |
| 225453867 | 767 | PREDICTED: subtilisin-like protease-like | 0.990 | 0.989 | 0.666 | 0.0 | |
| 356502434 | 839 | PREDICTED: subtilisin-like protease-like | 0.996 | 0.909 | 0.656 | 0.0 | |
| 225453869 | 768 | PREDICTED: subtilisin-like protease [Vit | 0.990 | 0.988 | 0.669 | 0.0 | |
| 147862821 | 1109 | hypothetical protein VITISV_040910 [Viti | 0.963 | 0.665 | 0.663 | 0.0 | |
| 357507043 | 786 | Subtilisin-like protease [Medicago trunc | 0.994 | 0.969 | 0.629 | 0.0 | |
| 356567230 | 757 | PREDICTED: subtilisin-like protease-like | 0.980 | 0.992 | 0.637 | 0.0 |
| >gi|224127486|ref|XP_002320086.1| predicted protein [Populus trichocarpa] gi|222860859|gb|EEE98401.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/759 (71%), Positives = 638/759 (84%), Gaps = 6/759 (0%)
Query: 12 LTATTSIASIGKQTTYVIHMDKSKIAANHS-PGSVRQFYEAVIDSINKFSSQQEDQEQET 70
+ A S ASI KQT Y+IHMDK+K+ A + G+ RQ+YE+VIDSI +FSSQ+ ++E ET
Sbjct: 1 MAAKASAASIDKQT-YIIHMDKNKMPALYDFLGNSRQWYESVIDSITQFSSQEHEEEHET 59
Query: 71 TPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI 130
PQ+LY YE SGF+AKLSTKQ+++L VDGFLSA PD +LTLHTT++P FLGL+SG
Sbjct: 60 GFPQLLYTYETVTSGFAAKLSTKQVEALSRVDGFLSAIPDGMLTLHTTHTPRFLGLQSGK 119
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
GLW+A NLA DVIVG++DTGIWPEH++FQD+GM VP +WKG CE GTKFS SNCN KLI
Sbjct: 120 GLWNAQNLASDVIVGILDTGIWPEHVSFQDSGMSAVPLKWKGKCESGTKFSPSNCNKKLI 179
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
GARAFFKGYES+VGRINET+DYRSPRD+QGHGTHTA+TAAGN+V A+ +GLA G AAGM
Sbjct: 180 GARAFFKGYESIVGRINETIDYRSPRDSQGHGTHTAATAAGNLVDEASFYGLANGSAAGM 239
Query: 251 RYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
+YT+RIAAYK CW+ GC+++D+LAAID+AVADGVDVLSLSLGGS++P+Y D+VAIASFGA
Sbjct: 240 KYTARIAAYKVCWTSGCTNTDLLAAIDQAVADGVDVLSLSLGGSAKPFYSDSVAIASFGA 299
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370
Q GVFVSCSAGNSGPSIS+VDN APWIMTVAASYTDR FP VKLGNG +FEG+SLY+G
Sbjct: 300 IQKGVFVSCSAGNSGPSISSVDNNAPWIMTVAASYTDRRFPTTVKLGNGQTFEGASLYTG 359
Query: 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAG 430
K + QLPLV+ TAG GAEYCI GSL +KLVKGK+V+C+RG+N R KGEQVKLAGG G
Sbjct: 360 KATAQLPLVYAGTAGGEGAEYCIIGSLKKKLVKGKMVVCKRGMNGRAEKGEQVKLAGGTG 419
Query: 431 MLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPV 490
MLL+N++ GEEL ADAH LPA +LGASAG AVK+Y+NSTKR TASI FKGTV+GNPAP+
Sbjct: 420 MLLINTETGGEELFADAHFLPATSLGASAGIAVKEYMNSTKRATASIAFKGTVYGNPAPM 479
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+A+FSSRGPS VG DVIKPDVTAPGVNILAAWP TSP++LKSD R VLFN+ISGTSMSC
Sbjct: 480 LAAFSSRGPSSVGPDVIKPDVTAPGVNILAAWPPMTSPTLLKSDKRSVLFNVISGTSMSC 539
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHVSGLAALLKSVH+ WS AAIKSALMTTAY +NR SPIAD GSS++ AT FAFGSG
Sbjct: 540 PHVSGLAALLKSVHKTWSPAAIKSALMTTAYVTDNRGSPIADA-GSSNSASATPFAFGSG 598
Query: 611 HVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPS 670
HVDPESASDPGLIYDI EDYL+Y CSLNYTS Q+A + N TCP+ A PG LNYPS
Sbjct: 599 HVDPESASDPGLIYDITIEDYLNYFCSLNYTSSQIAQVSRRNVTCPDNKALQPGDLNYPS 658
Query: 671 FAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSY 730
FAVNF+GN +N ++Y+R++TNVGT + TYAVKVEEPNGV V + P LSF+K+G+ LSY
Sbjct: 659 FAVNFEGNARNNRVKYKRTLTNVGTPWSTYAVKVEEPNGVSVILEPKSLSFEKLGQKLSY 718
Query: 731 KVTFVSLRGASNE---SFGSLTWVSGKYAVKSPIAVTWQ 766
VTFVS RG E SFGSL W+SGKY+V+SPIAVTWQ
Sbjct: 719 NVTFVSSRGKGREGSSSFGSLVWLSGKYSVRSPIAVTWQ 757
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541416|ref|XP_002511772.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223548952|gb|EEF50441.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/745 (70%), Positives = 619/745 (83%), Gaps = 10/745 (1%)
Query: 31 MDKSKIAA-NHSPGSVRQFYEAVIDSINKFSSQQEDQEQE-----TTPPQILYAYENAIS 84
MDKSKI A HS G+ +Q+YE++I+SI F SQ+E +E E T PQILY YE AI
Sbjct: 1 MDKSKIPAPYHSSGNSKQWYESMINSIADFPSQREHKEDEEEDDETGSPQILYVYETAIF 60
Query: 85 GFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLWDATNLAKDVIV 144
GF+A+LSTKQ++ L ++GFLSA PDE+L LHTT+SPHFLGL+SG GLW +LA DVI+
Sbjct: 61 GFAARLSTKQVQRLSKINGFLSAIPDEMLILHTTHSPHFLGLQSGEGLWSLPSLATDVII 120
Query: 145 GVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVG 204
G++DTGIWPEH++FQD G+ VPSRWKG C+ GTKFS SNCN K+IGA+AFFKGYES+VG
Sbjct: 121 GILDTGIWPEHVSFQDAGLSAVPSRWKGTCQNGTKFSPSNCNKKIIGAKAFFKGYESLVG 180
Query: 205 RINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS 264
RINETVDYRSPRDAQGHGTHTASTAAGN+V A+ FGLA G AAGM+YT+RIA YK CWS
Sbjct: 181 RINETVDYRSPRDAQGHGTHTASTAAGNLVDKASFFGLANGSAAGMKYTARIAVYKVCWS 240
Query: 265 LGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNS 324
LGC+++D+LAA+D+AVADGVDVLSLSLGG+++ +Y D VAIASFGATQ+GVFVSCSAGNS
Sbjct: 241 LGCTNTDLLAALDQAVADGVDVLSLSLGGTAKSFYSDNVAIASFGATQNGVFVSCSAGNS 300
Query: 325 GPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTA 384
GPS STVDNTAPWIMTVAASYTDRSFP VKLGNG F G SLYSG+ +KQL +V+G TA
Sbjct: 301 GPSTSTVDNTAPWIMTVAASYTDRSFPTTVKLGNGQIFTGVSLYSGRATKQLQIVYGTTA 360
Query: 385 GVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI 444
G A+YC +GSL ++LVKGKIV+C+RG+ RT KGEQVKLAGGAGMLL+NS+ +GEEL
Sbjct: 361 GHITAKYCTSGSLKKQLVKGKIVVCERGITGRTAKGEQVKLAGGAGMLLINSEGQGEELF 420
Query: 445 ADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGH 504
AD H+LPA TLGASAGKA+K Y+NSTKRPTASI FKGT +GNPAP +A+FSSRGPS VG
Sbjct: 421 ADPHILPACTLGASAGKAIKMYINSTKRPTASISFKGTTYGNPAPAVAAFSSRGPSAVGP 480
Query: 505 DVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH 564
+VIKPDVTAPGVNILAAWP TSPSMLK D R VLFN++SGTSMSCPHVSGLAALLKSVH
Sbjct: 481 EVIKPDVTAPGVNILAAWPPMTSPSMLKRDKRSVLFNVLSGTSMSCPHVSGLAALLKSVH 540
Query: 565 EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIY 624
DWS AAIKSALMTTAY L+N+N PIAD+ G++++ AT FAFGSGHVDPESASDPGLIY
Sbjct: 541 RDWSPAAIKSALMTTAYVLDNKNLPIADL-GANNSASATPFAFGSGHVDPESASDPGLIY 599
Query: 625 DIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSL 684
DI TEDYL+YLCSLNYTS Q+ + F+CPN + PG LNYPSFAVNF GN +N+S
Sbjct: 600 DITTEDYLNYLCSLNYTSAQVFQVSRRRFSCPNNTIIQPGDLNYPSFAVNFAGNAQNISK 659
Query: 685 EYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLR---GAS 741
++R+VTNVGT CTYAV+V+EPNGV + P IL F+ GE LSYKVTF+ L+
Sbjct: 660 TFKRTVTNVGTPSCTYAVQVQEPNGVSTVVNPKILRFRNSGEKLSYKVTFIGLKERDSRE 719
Query: 742 NESFGSLTWVSGKYAVKSPIAVTWQ 766
+ SFGSL WVSGKY VKSPIAVTW+
Sbjct: 720 SHSFGSLVWVSGKYKVKSPIAVTWR 744
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520481|ref|XP_003528890.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/771 (67%), Positives = 618/771 (80%), Gaps = 13/771 (1%)
Query: 1 MVFRTFLLLLVLTATTSIASIGKQTTYVIHMDKSKIAAN-HSPGSVRQFYEAVIDSINKF 59
M+FRT L LL T S+A + K+T Y+IHMDK+KI A+ HS + + ++++V+D I+
Sbjct: 1 MIFRTLLFLLAFMVTNSVAVMDKKT-YIIHMDKTKIKASIHSQDNTKPWFKSVVDFIS-- 57
Query: 60 SSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTY 119
E +E PQ+LY YE ++ GF+A+LS KQL+ L +DGFLSA PDELL LHTTY
Sbjct: 58 ----EASLEEDIAPQLLYVYETSMFGFAAQLSNKQLEYLNQIDGFLSAIPDELLNLHTTY 113
Query: 120 SPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTK 179
S HFLGL++G GLW A+NLA DVI+GV+DTGIWPEHI+FQDTG+ VPSRWKG CE GT
Sbjct: 114 SSHFLGLQNGKGLWSASNLASDVIIGVLDTGIWPEHISFQDTGLSKVPSRWKGACEAGTN 173
Query: 180 FSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANL 239
FS S+CN KL+GAR F +GYE GRINET+DYRS RDAQGHGTHTASTAAGN+V+NA+L
Sbjct: 174 FSSSSCNKKLVGARVFLQGYEKFAGRINETLDYRSARDAQGHGTHTASTAAGNMVSNASL 233
Query: 240 FGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299
FGLARG A+GMRYTSRIAAYK CW LGC++SDILAAID+AVADGVDVLSLSLGG ++PYY
Sbjct: 234 FGLARGSASGMRYTSRIAAYKVCWRLGCANSDILAAIDQAVADGVDVLSLSLGGIAKPYY 293
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359
D++AIASFGATQ GVFVSCSAGNSGPS ST N APWIMTVAASYTDRSFP VKLGNG
Sbjct: 294 NDSIAIASFGATQKGVFVSCSAGNSGPSSSTAGNVAPWIMTVAASYTDRSFPTKVKLGNG 353
Query: 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVS-GAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
F+GSSLY GK + LPLV+G ++ A+YC GSL+ K VKGKIV C+RG+NSRTG
Sbjct: 354 KVFKGSSLYKGKQTNLLPLVYGNSSKAQRTAQYCTKGSLDPKFVKGKIVACERGINSRTG 413
Query: 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIV 478
KGE+VK+AGGAGM+LLNS+ +GEEL AD HVLPA +LG+SA K ++ Y++S K PT SI
Sbjct: 414 KGEEVKMAGGAGMILLNSENQGEELFADPHVLPATSLGSSASKTIRSYIHSAKAPTVSIS 473
Query: 479 FKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538
F GT +G+PAPV+A+FSSRGPS VG DVIKPDVTAPGVNILAAWP TTSPSMLKSD R V
Sbjct: 474 FLGTTYGDPAPVMAAFSSRGPSAVGPDVIKPDVTAPGVNILAAWPPTTSPSMLKSDKRSV 533
Query: 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD 598
LFNI+SGTSMSCPHVSG+A L+KSVH+DWS AAIKSALMTTA T NN+ +PIAD GS++
Sbjct: 534 LFNIVSGTSMSCPHVSGIATLIKSVHKDWSPAAIKSALMTTASTSNNKGAPIAD-NGSNN 592
Query: 599 TPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNP 658
+ A FAFGSGHV+PE ASDPGL+YDI T+DYL+YLCSL YTS Q+A+ + GNF C
Sbjct: 593 SAFADPFAFGSGHVNPERASDPGLVYDITTKDYLNYLCSLKYTSSQIAILSKGNFKCAKK 652
Query: 659 SAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPI 718
SA H G LNYPSFAV F + +N S+ Y+R VTNVG +YAVKVEEP GV V++ P
Sbjct: 653 SALHAGDLNYPSFAVLFGTSARNASVAYKRVVTNVGKPSSSYAVKVEEPKGVSVSVEPRN 712
Query: 719 LSFQKIGEILSYKVTFVSLRG---ASNESFGSLTWVSGKYAVKSPIAVTWQ 766
+SF+KIG+ LSYKVTFVS A + SFGSLTWVS KY V+SPIAVTWQ
Sbjct: 713 ISFRKIGDKLSYKVTFVSYGRTAIAGSSSFGSLTWVSDKYTVRSPIAVTWQ 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506320|ref|XP_003521933.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/772 (68%), Positives = 618/772 (80%), Gaps = 12/772 (1%)
Query: 1 MVFRTFLLLLVLTATTSIASIGKQTTYVIHMDKSKIAAN-HSPGSVRQFYEAVIDSINKF 59
M+FRT L LL T S+A + KQT Y+IHMDK+KI A HS + ++++VID F
Sbjct: 259 MIFRTLLFLLAYMVTNSVAVMNKQT-YIIHMDKTKIKATVHSQDKTKPWFKSVID----F 313
Query: 60 SSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTY 119
S+ +E PQ+LY YE ++ GF+A+LS KQL+ L +DGFLSA PDELLTLHTTY
Sbjct: 314 ISEASSSSEEEEAPQLLYVYETSMFGFAAQLSNKQLEYLNQIDGFLSAIPDELLTLHTTY 373
Query: 120 SPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTK 179
SPHFLGL++G GLW A+NLA DVI+GV+DTGIWPEHI+FQDTG+ VPSRWKG CE GT
Sbjct: 374 SPHFLGLQNGKGLWSASNLASDVIIGVLDTGIWPEHISFQDTGLSKVPSRWKGACEVGTN 433
Query: 180 FSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANL 239
FS S CN KL+GAR F +GYE GRINET+DYRS RDAQGHGTHTASTAAGN+V+NA+
Sbjct: 434 FSSSCCNKKLVGARVFLQGYEKSAGRINETLDYRSARDAQGHGTHTASTAAGNMVSNASF 493
Query: 240 FGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299
FGLA G A+GMRYTSRIAAYK CW LGC++SDILAAID+AVADGVDVLSLSLGG ++PYY
Sbjct: 494 FGLAGGSASGMRYTSRIAAYKVCWRLGCANSDILAAIDQAVADGVDVLSLSLGGIAKPYY 553
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359
D++AIASFGATQ GVFVSCSAGNSGPS ST N APWIMTVAASYTDRSFP VKLGNG
Sbjct: 554 NDSIAIASFGATQKGVFVSCSAGNSGPSSSTAGNVAPWIMTVAASYTDRSFPTQVKLGNG 613
Query: 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVS-GAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
F+GSSLY GK + QLPLV+ ++ A+YC GSL+ KLVKGKIV C+RG+NSRTG
Sbjct: 614 KVFKGSSLYKGKKTSQLPLVYRNSSRAQRTAQYCTKGSLDPKLVKGKIVACERGINSRTG 673
Query: 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYV-NSTKRPTASI 477
KGE+VK+AGGAGM+LLNS+ +GEEL AD HVLPA +LG+SA K ++ Y+ +S K PTASI
Sbjct: 674 KGEEVKMAGGAGMILLNSENQGEELFADPHVLPATSLGSSASKTIRSYIFHSAKAPTASI 733
Query: 478 VFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRR 537
F GT +G+ APV+A+FSSRGPS VG DVIKPDVTAPGVNILAAWP TTSPSMLKSD R
Sbjct: 734 SFLGTTYGDTAPVMAAFSSRGPSSVGPDVIKPDVTAPGVNILAAWPPTTSPSMLKSDKRS 793
Query: 538 VLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSS 597
VLFNI+SGTSMSCPHVSG+AAL+KSVH+DWS AAIKSALMTTA T NN+ +PI+D GS+
Sbjct: 794 VLFNIVSGTSMSCPHVSGIAALIKSVHKDWSPAAIKSALMTTASTSNNKGAPISD-NGSN 852
Query: 598 DTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPN 657
++ A FAFGSGHV+PE ASDPGL+YDI T+DYL+YLCSL YTS Q+A+ + GNF C
Sbjct: 853 NSAFADPFAFGSGHVNPERASDPGLVYDITTKDYLNYLCSLKYTSSQIAILSKGNFKCAK 912
Query: 658 PSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPP 717
SA H G LNYPSFAV F + +N S+ Y+R VTNVG +YAVKVEEP GV VT+ P
Sbjct: 913 KSALHAGGLNYPSFAVLFDTSARNASVTYKRVVTNVGNPSSSYAVKVEEPKGVSVTVEPR 972
Query: 718 ILSFQKIGEILSYKVTFVSLRG---ASNESFGSLTWVSGKYAVKSPIAVTWQ 766
+ F+KIG+ LSYKV+FVS A + SFGSLTWVSGKYAV+SPIAVTWQ
Sbjct: 973 NIGFRKIGDKLSYKVSFVSYGRTAVAGSSSFGSLTWVSGKYAVRSPIAVTWQ 1024
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453867|ref|XP_002272965.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/773 (66%), Positives = 633/773 (81%), Gaps = 14/773 (1%)
Query: 2 VFRT-FLLLLVLTATTSIASIGKQTTYVIHMDKSKIAA-NHSPGSVRQFYEAVIDSINKF 59
+FRT FLLL + A TSIAS KQT YV+HMDK+KI A + G +++YEAV+DSI +
Sbjct: 1 MFRTSFLLLAFMAAATSIASTDKQT-YVVHMDKAKITALRLALGDSKKWYEAVVDSIIEL 59
Query: 60 SSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTY 119
S+Q D+E+ET+PPQ+LY YE A++GF+AKLS KQL++L+ V+GFLSA PDELL+LHTT+
Sbjct: 60 STQ--DEEEETSPPQLLYTYETAMTGFAAKLSIKQLQALDKVEGFLSAVPDELLSLHTTH 117
Query: 120 SPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTK 179
SP FLGL G GLW NLA DVI+G+ID+GIWPEH++F D GM PVPS+WKG CEEGTK
Sbjct: 118 SPQFLGLHKGKGLWSTHNLATDVIIGIIDSGIWPEHVSFHDWGMSPVPSKWKGACEEGTK 177
Query: 180 FSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANL 239
F+ SNCN KLIGARAFFKGYE+ GRINETVDYRS RD+QGHGTHTASTAAG++VA A++
Sbjct: 178 FTSSNCNKKLIGARAFFKGYEARAGRINETVDYRSARDSQGHGTHTASTAAGDMVAGASI 237
Query: 240 FGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299
FG+A+G A+GM YTSRIAAYK C+ GC++SDILAAID+AV+DGVD+LSLSLGG+SRPYY
Sbjct: 238 FGMAKGSASGMMYTSRIAAYKVCYIQGCANSDILAAIDQAVSDGVDILSLSLGGASRPYY 297
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359
D++AIASFGA Q+GV VSCSAGNSGPS STV N+APWIMT+AAS DRSFP IVKLGNG
Sbjct: 298 SDSLAIASFGAVQNGVLVSCSAGNSGPSSSTVSNSAPWIMTIAASSLDRSFPTIVKLGNG 357
Query: 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGK 419
++ G+SLYSGK + +L L +G+TAG GAEYC G+L+ L+KGKIV+CQRG+N R K
Sbjct: 358 ETYHGASLYSGKPTHKLLLAYGETAGSQGAEYCTMGTLSPDLIKGKIVVCQRGINGRVQK 417
Query: 420 GEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVF 479
GEQV++AGGAGMLLLN++ +GEELIADAH+LPA +LGASA K++ KY S++ PTASIVF
Sbjct: 418 GEQVRMAGGAGMLLLNTEDQGEELIADAHILPATSLGASAAKSIIKYA-SSRNPTASIVF 476
Query: 480 KGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539
+GTV+GNPAPV+A+FSSRGP+ G VIKPDVTAPGVNILA+WP T SP+ L +D+R VL
Sbjct: 477 QGTVYGNPAPVMAAFSSRGPASEGPYVIKPDVTAPGVNILASWPPTVSPTRLNTDNRSVL 536
Query: 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDT 599
FNI+SGTSMSCPHVSGLAALLK+VH+DWS AAIKSALMTTAYTL+N+ + I+D+ GS +
Sbjct: 537 FNIVSGTSMSCPHVSGLAALLKAVHKDWSPAAIKSALMTTAYTLDNKRASISDM-GSGGS 595
Query: 600 PLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG-NFTCPNP 658
P AT FA GSGHV+PE ASDPGLIYDI T+DYL++LCSLNYTS Q+AL + G +FTCPN
Sbjct: 596 P-ATPFACGSGHVNPEKASDPGLIYDITTDDYLNHLCSLNYTSSQIALVSRGISFTCPND 654
Query: 659 SA-FHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPP 717
+ PG LNYPS AV F GN +N S Y+R+VTNVG TY +V+EP+GV V + P
Sbjct: 655 TLHLQPGDLNYPSLAVLFNGNAQNNSATYKRTVTNVGQPTSTYVAQVQEPDGVSVMVEPS 714
Query: 718 ILSFQKIGEILSYKVTFVSL----RGASNESFGSLTWVSGKYAVKSPIAVTWQ 766
+L F+K + LSYKV+FV++ + SFGSL WVS K+ V+SPIA+TWQ
Sbjct: 715 VLKFRKFNQRLSYKVSFVAMGAASASVPSSSFGSLVWVSKKHRVRSPIAITWQ 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502434|ref|XP_003520024.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/771 (65%), Positives = 616/771 (79%), Gaps = 8/771 (1%)
Query: 2 VFRTFLLLLVLTATTSIASIGKQTTYVIHMDKSKIAAN-HSPGSVRQFYEAVIDSINKFS 60
+FR +L L L T SIA Q TY++HMD++KI A+ H+ S + ++E++ID I++ S
Sbjct: 71 LFRILILFLALMVTNSIA-FADQQTYIVHMDQTKIKASIHTQDSTKPWFESIIDFISESS 129
Query: 61 SQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYS 120
Q+ED+E + PQ+LY YE ++ GF+A LS K LK L VDGFLSA PDEL TLHTTY+
Sbjct: 130 MQEEDEEDDNLAPQLLYTYETSMFGFAAHLSKKHLKYLNQVDGFLSAIPDELSTLHTTYT 189
Query: 121 PHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKF 180
PHFLGL +G LW A+NLA DVI+GV+D+GIWPEHI+FQD+GM PVPS WKG CE+GTKF
Sbjct: 190 PHFLGLRNGRSLWSASNLATDVIIGVLDSGIWPEHISFQDSGMSPVPSHWKGVCEKGTKF 249
Query: 181 SQSNCNNKLIGARAFFKGYESVVGR-INETVDYRSPRDAQGHGTHTASTAAGNIVANANL 239
S SNCN KL+GARA++KGYE G+ INETVDY SPRD+QGHGTHTAST+AGN+V NAN
Sbjct: 250 SSSNCNKKLVGARAYYKGYEIFFGKKINETVDYLSPRDSQGHGTHTASTSAGNVVKNANF 309
Query: 240 FGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299
FG ARG A GMRYTSRIA YK CWS GC+++D+LAA+D+AV+DGVDVLSLSLG +P+Y
Sbjct: 310 FGQARGTACGMRYTSRIAVYKVCWSSGCTNADVLAAMDQAVSDGVDVLSLSLGSIPKPFY 369
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359
D++AIAS+GA + GV V+CSAGNSGP STV N APWIMTVAAS TDRSFP VKLGNG
Sbjct: 370 SDSIAIASYGAIKKGVLVACSAGNSGPFPSTVGNGAPWIMTVAASSTDRSFPTKVKLGNG 429
Query: 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSG-AEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
+F+GSSLY GK + QLPLV+GK+AG A+YCI GSL+ KLV GKIV C+RG+N RT
Sbjct: 430 KTFKGSSLYQGKKTNQLPLVYGKSAGAKKEAQYCIGGSLDPKLVHGKIVACERGINGRTE 489
Query: 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIV 478
KGE+VK+AGGAGM+LLN++ +GEEL AD H+LPA +LGASA K ++ Y S K+PTASI
Sbjct: 490 KGEEVKVAGGAGMILLNNEYQGEELFADPHILPATSLGASASKTIRSYSQSVKKPTASIS 549
Query: 479 FKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538
F GT FG+PAPV+A+FSSRGPSLVG DVIKPDVTAPGVNILAAWP SPS L SD R+V
Sbjct: 550 FMGTRFGDPAPVMAAFSSRGPSLVGPDVIKPDVTAPGVNILAAWPTKISPSFLMSDKRKV 609
Query: 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD 598
LFNI+SGTSMSCPHVSG+AALLKS+H+DWS AAIKSALMTTAYTLNN+ +PI+D+ S++
Sbjct: 610 LFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDM-ASNN 668
Query: 599 TPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNP 658
+PLAT FAFGSGHV+P SASDPGL+YDI+T+DYL+YLCS+NYTS Q+AL + G F C
Sbjct: 669 SPLATPFAFGSGHVNPVSASDPGLVYDISTKDYLNYLCSINYTSSQIALLSRGKFVCSKK 728
Query: 659 SAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPI 718
+ G LNYPSFAV + N+S+ Y R VTNVG YAVK+E+PNGV VT+ P
Sbjct: 729 AVLQAGDLNYPSFAVLLGKSALNVSVTYRRVVTNVGKPQSAYAVKLEQPNGVSVTVEPRK 788
Query: 719 LSFQKIGEILSYKVTFVSLRGAS---NESFGSLTWVSGKYAVKSPIAVTWQ 766
L F+K+G+ LSYKVTF+S+ GA SFGSL WVSG+Y V+SP+AVTWQ
Sbjct: 789 LKFEKVGQKLSYKVTFLSIGGARVAGTSSFGSLIWVSGRYQVRSPMAVTWQ 839
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453869|ref|XP_002272999.1| PREDICTED: subtilisin-like protease [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/775 (66%), Positives = 626/775 (80%), Gaps = 16/775 (2%)
Query: 1 MVFRT-FLLLLVLTATTSIASIGKQTTYVIHMDKSKIAA-NHSPGSVRQFYEAVIDSINK 58
M+FRT LLL + A TSIAS +QT YV+HMDK++I + + G R++YEAV+DSIN+
Sbjct: 1 MMFRTSLLLLAFMAAATSIASTDRQT-YVVHMDKTRITSLDGILGDSRKWYEAVMDSINE 59
Query: 59 FSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTT 118
S Q E+ET+PP++LY YE AI+GF+AKLS KQL++L V+GFLSA PDELL LHTT
Sbjct: 60 LSIQG-GGEEETSPPELLYTYETAITGFAAKLSIKQLQALNKVEGFLSAVPDELLGLHTT 118
Query: 119 YSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGT 178
+SP FLGL +G GLW+A NLA DVI+G++DTGIWPEH++FQD GM VPS+WKG CEEGT
Sbjct: 119 HSPQFLGLHTGRGLWNAHNLATDVIIGIVDTGIWPEHVSFQDRGMSSVPSQWKGACEEGT 178
Query: 179 KFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANAN 238
KF+ SNCN KLIGAR FFKGYE++ GRINE VD++S RD+ GHGTHTASTAAGN++ A+
Sbjct: 179 KFTHSNCNKKLIGARVFFKGYEAIRGRINELVDFKSARDSLGHGTHTASTAAGNVIPGAS 238
Query: 239 LFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPY 298
LFG +G A GMRYTSRIAAYKAC++ GC++SDILAAID+AV+DGVDVLSLS+GG S+PY
Sbjct: 239 LFGRGKGFARGMRYTSRIAAYKACYAGGCANSDILAAIDQAVSDGVDVLSLSVGGDSKPY 298
Query: 299 YRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGN 358
+ D++AIASFGA Q+GVFVSCSAGNSGPS STV N+APWIMTVAAS DRSFP IVKLGN
Sbjct: 299 HIDSIAIASFGAVQNGVFVSCSAGNSGPSSSTVANSAPWIMTVAASSLDRSFPTIVKLGN 358
Query: 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
G +F G+SLYSGK +KQL L +G+TAG G YCI G+L+ LVKGKIV+C+RG+NSR
Sbjct: 359 GETFHGASLYSGKATKQLLLAYGETAGRVGVNYCIGGTLSPNLVKGKIVVCKRGVNSRVV 418
Query: 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIV 478
KGEQVK+AGGAGM+LLN++ +GEEL+AD HVLPA +LGASAGK++ YVNS TASIV
Sbjct: 419 KGEQVKMAGGAGMILLNTEAQGEELVADPHVLPAISLGASAGKSIINYVNSGNS-TASIV 477
Query: 479 FKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538
F+GT +GNPAPV+A+FSSRGP+ G VIKPDVTAPGVNILAAWP T SP+ LKSD+R V
Sbjct: 478 FRGTAYGNPAPVMAAFSSRGPASEGPYVIKPDVTAPGVNILAAWPPTVSPTGLKSDNRSV 537
Query: 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADV--GGS 596
LF+++SGTSMSCPHVSGLAALLKSVH+DWS AAIKSALMTTAYTL+N+ SPI+D GGS
Sbjct: 538 LFDVLSGTSMSCPHVSGLAALLKSVHKDWSPAAIKSALMTTAYTLDNKRSPISDFGSGGS 597
Query: 597 SDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG-NFTC 655
S TP FA+GSGHV+PE AS PGLIYDI TEDYL+YLCSLNYTS Q+A + +FTC
Sbjct: 598 SATP----FAYGSGHVNPEKASKPGLIYDITTEDYLNYLCSLNYTSSQIARVSRRISFTC 653
Query: 656 PNPSA-FHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTI 714
PN S PG LNYPSFAV F GN + Y+RSVTNVG TY +V+EP GV V +
Sbjct: 654 PNDSVHLQPGDLNYPSFAVLFNGNAQKNRATYKRSVTNVGYPTTTYVAQVQEPEGVSVMV 713
Query: 715 TPPILSFQKIGEILSYKVTFVS---LRGASNESFGSLTWVSGKYAVKSPIAVTWQ 766
P +L F+++ + LSYKV+FV+ +S+ SFGSL WVS KY V+SPIAVTWQ
Sbjct: 714 KPNVLKFKELNQKLSYKVSFVASRKTSTSSSWSFGSLVWVSRKYRVRSPIAVTWQ 768
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862821|emb|CAN81090.1| hypothetical protein VITISV_040910 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/751 (66%), Positives = 613/751 (81%), Gaps = 13/751 (1%)
Query: 12 LTATTSIASIGKQTTYVIHMDKSKIAA-NHSPGSVRQFYEAVIDSINKFSSQQEDQEQET 70
+ A TSIAS KQT YV+HMDK+KI A + G +++YEAV+DSI + S+Q D+E+ET
Sbjct: 1 MAAATSIASTDKQT-YVVHMDKAKITALRLALGDSKKWYEAVVDSIIELSTQ--DEEEET 57
Query: 71 TPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI 130
+PPQ+LY YE A++GF+AKLS KQL++L+ V+GFLSA PDELL+LHTT+SP FLGL G
Sbjct: 58 SPPQLLYTYETAMTGFAAKLSIKQLQALDKVEGFLSAVPDELLSLHTTHSPQFLGLHKGK 117
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
GLW NLA DVI+G+ID+GIWPEH++F D GM PVPS+WKG CEEGTKF+ SNCN KLI
Sbjct: 118 GLWSTHNLATDVIIGIIDSGIWPEHVSFHDWGMSPVPSKWKGACEEGTKFTSSNCNKKLI 177
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
GARAFFKGYE+ GRINETVDYRS RD+QGHGTHTASTAAG++VA A++FG+A+G A+GM
Sbjct: 178 GARAFFKGYEARAGRINETVDYRSARDSQGHGTHTASTAAGDMVAGASIFGMAKGSASGM 237
Query: 251 RYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
YTSRIAAYK C+ GC++SDILAAID+A +DGVD+LSLSLGG+SRPYY D++AIASFGA
Sbjct: 238 MYTSRIAAYKVCYIQGCANSDILAAIDQAXSDGVDILSLSLGGASRPYYSDSLAIASFGA 297
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370
Q+GV VSCSAGNSGPS STV N+APWIMT+AAS DRSFP IVKLGNG ++ G+SLYSG
Sbjct: 298 VQNGVLVSCSAGNSGPSSSTVSNSAPWIMTIAASSLDRSFPTIVKLGNGETYHGASLYSG 357
Query: 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAG 430
K + +L L +G+TAG GAEYC G+L+ L+KGKIV+CQRG+N R KGEQV++AGGAG
Sbjct: 358 KPTHKLLLAYGETAGSQGAEYCTMGTLSPDLIKGKIVVCQRGINGRVQKGEQVRMAGGAG 417
Query: 431 MLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPV 490
MLLLN++ +GEELIADAH+LPA +LGASA K++ KY S++ PTASIVF+GTV+GNPAPV
Sbjct: 418 MLLLNTEDQGEELIADAHILPATSLGASAAKSIIKYA-SSRNPTASIVFQGTVYGNPAPV 476
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+A+FSSRGP+ G VIKPDVTAPGVNILA WP T SP+ L +D+R VLFNI+SGTSMSC
Sbjct: 477 MAAFSSRGPASEGPYVIKPDVTAPGVNILAXWPPTVSPTRLNTDNRSVLFNIVSGTSMSC 536
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHVSGLAALLK+VH+DWS AAIKSALMTTAYTL+N+ + I+D+ GS +P AT FA GSG
Sbjct: 537 PHVSGLAALLKAVHKDWSPAAIKSALMTTAYTLDNKRASISDM-GSGGSP-ATPFACGSG 594
Query: 611 HVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG-NFTCPNPS-AFHPGKLNY 668
HV+PE AS+PG+IYDI TEDYL++LCSLNYTS Q+AL + G +FTCPN + PG LNY
Sbjct: 595 HVNPEKASNPGIIYDITTEDYLNHLCSLNYTSSQIALVSRGISFTCPNDTLHLQPGDLNY 654
Query: 669 PSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEIL 728
PS AV F GN +N S Y+R+VTNVG TY +V+EP+GV V + P +L F+K + L
Sbjct: 655 PSLAVLFNGNAQNNSATYKRTVTNVGQPTSTYVAQVQEPDGVSVMVEPSVLKFRKFNQRL 714
Query: 729 SYKVTFVSL----RGASNESFGSLTWVSGKY 755
SYKV+FV++ + SFGSL WVS K+
Sbjct: 715 SYKVSFVAMGAASASVPSSSFGSLVWVSKKH 745
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507043|ref|XP_003623810.1| Subtilisin-like protease [Medicago truncatula] gi|355498825|gb|AES80028.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/778 (62%), Positives = 609/778 (78%), Gaps = 16/778 (2%)
Query: 1 MVFRTFLLLLVLTATTSIASIGKQTTYVIHMDKSKI-AANHSPGSVRQFYEAVIDSINKF 59
M+FR L L L T S+A + Q TY++HMDK+KI A+ HS + + E++ID I++
Sbjct: 13 MIFRIVFLFLALMVTNSVA-LSAQQTYIVHMDKTKIEASTHSQDGTKPWSESIIDFISQA 71
Query: 60 SSQQEDQEQETT-----PPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLT 114
S + ED+E+E PQ+LYAYE + GF+A LS KQLK L VDGFLSA PDEL T
Sbjct: 72 SIEDEDEEEEEEEEVLLSPQLLYAYETNMFGFAATLSEKQLKHLNQVDGFLSAIPDELST 131
Query: 115 LHTTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGC 174
LHTT++PHFLGL +G GLW A +LA DVI+GV+D+GIWPEH++F+D+G PVP WKG C
Sbjct: 132 LHTTHTPHFLGLTNGKGLWSAPSLASDVIIGVLDSGIWPEHVSFKDSGFSPVPPHWKGVC 191
Query: 175 EEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIV 234
E+GTKFS SNCN KLIGAR +F+GYE +G+INET DYRS RD+QGHGTHTAST AGN+V
Sbjct: 192 EQGTKFSLSNCNKKLIGARYYFRGYEKFIGKINETTDYRSARDSQGHGTHTASTTAGNVV 251
Query: 235 ANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGS 294
NAN+FGLARG A+GMRYTSRIAAYK CW GC++SD+LAA+D+AV+DGVDVLSLSLG
Sbjct: 252 KNANIFGLARGSASGMRYTSRIAAYKVCWLSGCANSDVLAAMDQAVSDGVDVLSLSLGSI 311
Query: 295 SRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIV 354
+P+Y D++AIASFGAT++GVFVSCSAGNSGP STV N APWIMTVAASY DR+FP V
Sbjct: 312 PKPFYNDSIAIASFGATKNGVFVSCSAGNSGPFASTVGNGAPWIMTVAASYIDRTFPTKV 371
Query: 355 KLGNGHSFEGSSLYSGKG--SKQLPLVFGKTAGVS-GAEYCINGSLNRKLVKGKIVICQR 411
KLGN +FEG+SLY GK ++Q PLV+GKTAG A +C SL++KLV GKIV+C+R
Sbjct: 372 KLGNSKNFEGTSLYQGKNEPNQQFPLVYGKTAGKKREAVFCTKNSLDKKLVFGKIVVCER 431
Query: 412 GLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTK 471
G+N RT KG +VK +GG GM+LLNS +GEEL++D H+LPA +LGASAGKA++ Y+N+TK
Sbjct: 432 GINGRTEKGAEVKNSGGYGMILLNSANQGEELLSDPHILPATSLGASAGKAIRIYLNTTK 491
Query: 472 RPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSML 531
+PTASI F GT +GN AP++A+FSSRGP+++ D+IKPDVTAPGVNILAAWP+ TSPSM+
Sbjct: 492 KPTASISFLGTRYGNIAPIVAAFSSRGPNIIAQDIIKPDVTAPGVNILAAWPSKTSPSMI 551
Query: 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIA 591
KSD RRVLFNI+SGTSMSCPHVSG+AAL+KSVH+DWS A IKS+LMTTAYTLNNR PI+
Sbjct: 552 KSDKRRVLFNIVSGTSMSCPHVSGVAALIKSVHKDWSPAMIKSSLMTTAYTLNNRKLPIS 611
Query: 592 DVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG 651
D+ ++ P A FAFGSGHV+PESASDPGL+YDI T+DYL+Y CSLN+TS ++ +
Sbjct: 612 DLALNNSAP-ANPFAFGSGHVNPESASDPGLVYDINTKDYLNYFCSLNFTSSEITILTKT 670
Query: 652 NFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVL 711
NF C F G LNYPSF+V F N++ Y+R VTNVG S Y V+V EP+GV+
Sbjct: 671 NFKCSKKPVFQVGDLNYPSFSVLFSKTTHNVT--YKRVVTNVGKSQSAYVVEVLEPHGVI 728
Query: 712 VTITPPILSFQKIGEILSYKVTFVSL---RGASNESFGSLTWVSGKYAVKSPIAVTWQ 766
V + P L F+K G+ LSYKVTF+++ R + SFGS+ WVSGKY V+SPIAVTWQ
Sbjct: 729 VNVEPRKLKFEKFGQKLSYKVTFLAVGKARVTGSSSFGSIIWVSGKYKVRSPIAVTWQ 786
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567230|ref|XP_003551824.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/758 (63%), Positives = 596/758 (78%), Gaps = 7/758 (0%)
Query: 14 ATTSIASIGKQTTYVIHMDKSKIAAN-HSPGSVRQFYEAVIDSINKFSSQQEDQEQETTP 72
AT SIA + Q TY++HMDK+K+ + HS + + E++I I++ S Q+E++++E
Sbjct: 2 ATNSIA-VADQQTYIVHMDKTKLKVSIHSHDRSKPWSESIIYFISEASMQEEEEKEEILA 60
Query: 73 PQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGL 132
PQ+LY YE + GF+A+LS K LK L VDGFLSA PDEL TLHTTY+PHFLGL++G L
Sbjct: 61 PQLLYTYETTMFGFAAQLSKKHLKYLNQVDGFLSAIPDELSTLHTTYTPHFLGLDNGSAL 120
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
W A+NLA D+I+GVID+GIWPEHI+FQD+G+ PVPS WKG CE+GT FS S+CN KLIGA
Sbjct: 121 WSASNLASDMIIGVIDSGIWPEHISFQDSGLSPVPSHWKGVCEQGTNFSASDCNKKLIGA 180
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
R +FKGYE V G++NETV Y SPRD++GHGTHTASTAAGN+V NANL+G A G A+GMRY
Sbjct: 181 RTYFKGYEKVFGKLNETVSYLSPRDSEGHGTHTASTAAGNVVKNANLYGQAGGTASGMRY 240
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQ 312
TSRIA YK CW GC++SDILAA+D+AV+DGVDVLSLSLG +P+Y D +A+ASFGAT+
Sbjct: 241 TSRIAVYKVCWPKGCANSDILAAVDQAVSDGVDVLSLSLGSDPKPFYDDLIAVASFGATK 300
Query: 313 SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG 372
GVFV+CSAGN GPS STV N APWIMTVAAS TDRSFP V LGNG F+G+SLY G
Sbjct: 301 KGVFVACSAGNKGPSPSTVSNGAPWIMTVAASSTDRSFPTEVMLGNGKFFKGTSLYQGNL 360
Query: 373 SKQLPLVFGKTAGVSG-AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGM 431
+ QLPLVFGK+AG A++C GSL+ KLV GKIV+C+RG N RT GE VK+AGGAGM
Sbjct: 361 TNQLPLVFGKSAGTKKEAQHCSEGSLDPKLVHGKIVVCERGKNGRTEMGEVVKVAGGAGM 420
Query: 432 LLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVI 491
++LN++ +GEE+ AD H+LPA +LGAS GK ++ Y+ S K+PTASI F GT FG+PAPV+
Sbjct: 421 IVLNAENQGEEIYADLHILPATSLGASEGKTIETYIQSDKKPTASISFMGTKFGDPAPVM 480
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+FSSRGPS+VG DVIKPDVTAPGVNILAAWP TSPS + +D R VLFNI+ GTSMSCP
Sbjct: 481 GAFSSRGPSIVGPDVIKPDVTAPGVNILAAWPPKTSPSFIMNDKREVLFNILWGTSMSCP 540
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HVSG+AALLKS+H+DWS AAIKSALMTTAYTLNN+ +PI+D+ S + AT FAFGSGH
Sbjct: 541 HVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDM-ASDNKAFATPFAFGSGH 599
Query: 612 VDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSF 671
V+P SA DPGL+YDI TEDYL+YLCSLNYTS Q+AL + G F C + G LNYPSF
Sbjct: 600 VNPVSAFDPGLVYDIGTEDYLNYLCSLNYTSSQIALLSRGKFACSKKAVLQAGDLNYPSF 659
Query: 672 AVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYK 731
AV F + N ++ Y R VTNVG YAVKV++P+GV VT+ P +L F+K+G+ LSYK
Sbjct: 660 AVLFDRSALNANVTYTRVVTNVGKPQSAYAVKVKQPDGVSVTVEPRVLKFEKVGQKLSYK 719
Query: 732 VTFVSL---RGASNESFGSLTWVSGKYAVKSPIAVTWQ 766
VTF+++ R A SFGSL WVSG+Y V+SPIA+TW+
Sbjct: 720 VTFLAVGKARVAGTSSFGSLIWVSGRYQVRSPIALTWK 757
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| TAIR|locus:2025457 | 774 | SBTI1.1 "AT1G01900" [Arabidops | 0.903 | 0.894 | 0.609 | 3.2e-232 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.945 | 0.956 | 0.494 | 1e-187 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.960 | 0.943 | 0.470 | 2e-182 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.891 | 0.905 | 0.492 | 1.7e-178 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.951 | 0.939 | 0.463 | 1.2e-175 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.898 | 0.887 | 0.489 | 2.5e-175 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.953 | 0.954 | 0.463 | 8.6e-175 | |
| UNIPROTKB|Q8LSS2 | 773 | OSJNBa0011L09.20 "Subtilisin N | 0.894 | 0.886 | 0.489 | 5.4e-173 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.890 | 0.877 | 0.487 | 4.9e-172 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.943 | 0.946 | 0.470 | 2.1e-171 |
| TAIR|locus:2025457 SBTI1.1 "AT1G01900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 3.2e-232, P = 3.2e-232
Identities = 424/696 (60%), Positives = 525/696 (75%)
Query: 75 ILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLWD 134
I Y YENA+SGFSA L+ QL +++ GF+SA PDELL+LHTTYS FLGLE GIGLW+
Sbjct: 79 IHYIYENAMSGFSATLTDDQLDTVKNTKGFISAYPDELLSLHTTYSHEFLGLEFGIGLWN 138
Query: 135 ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARA 194
T+L+ DVI+G++DTGI PEH++F+DT M PVPSRW+G C+EGT FS S CN K+IGA A
Sbjct: 139 ETSLSSDVIIGLVDTGISPEHVSFRDTHMTPVPSRWRGSCDEGTNFSSSECNKKIIGASA 198
Query: 195 FFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTS 254
F+KGYES+VG+INET D+RS RDAQGHGTHTASTAAG+IV AN FG A+G A+GMR+TS
Sbjct: 199 FYKGYESIVGKINETTDFRSTRDAQGHGTHTASTAAGDIVPKANYFGQAKGLASGMRFTS 258
Query: 255 RIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSG 314
RIAAYKACW+LGC+S+D++AAID+A+ RP+Y D +AIA FGA Q
Sbjct: 259 RIAAYKACWALGCASTDVIAAIDRAILDGVDVISLSLGGSSRPFYVDPIAIAGFGAMQKN 318
Query: 315 VFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSK 374
+FVSCSAGNSGP+ STV N APW+MTVAASYTDR+FPAIV++GN S GSSLY GK K
Sbjct: 319 IFVSCSAGNSGPTASTVSNGAPWLMTVAASYTDRTFPAIVRIGNRKSLVGSSLYKGKSLK 378
Query: 375 QLPLVFGKTAGV-SGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLL 433
LPL F +TAG SGA +CI SL R+LV+GKIVIC RG + RT KGE+VK +GGA MLL
Sbjct: 379 NLPLAFNRTAGEESGAVFCIRDSLKRELVEGKIVICLRGASGRTAKGEEVKRSGGAAMLL 438
Query: 434 LNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIAS 493
++++ EGEEL+AD HVLPA +LG S GK + Y+ TAS+ F+GT +G AP++A+
Sbjct: 439 VSTEAEGEELLADPHVLPAVSLGFSDGKTLLNYLAGAANATASVRFRGTAYGATAPMVAA 498
Query: 494 FSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHV 553
FSSRGPS+ G ++ KPD+ APG+NILA W +SPS+L+SD RRV FNIISGTSM+CPH+
Sbjct: 499 FSSRGPSVAGPEIAKPDIAAPGLNILAGWSPFSSPSLLRSDPRRVQFNIISGTSMACPHI 558
Query: 554 SGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVD 613
SG+AAL+KSVH DWS A IKSA+MTTA +NRN PI D G + ATAFAFG+G+VD
Sbjct: 559 SGIAALIKSVHGDWSPAMIKSAIMTTARITDNRNRPIGDRGAAGAESAATAFAFGAGNVD 618
Query: 614 PESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCP-NPSAFHPGKLNYPSFA 672
P A DPGL+YD +T DYL+YLCSLNYTS ++ LF+G N+TC N PG LNYPSFA
Sbjct: 619 PTRAVDPGLVYDTSTVDYLNYLCSLNYTSERILLFSGTNYTCASNAVVLSPGDLNYPSFA 678
Query: 673 VNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKV 732
VN ++ Y+R+VTNVG+ C Y V VEEP GV V + P +L FQK E LSY V
Sbjct: 679 VNLVNGANLKTVRYKRTVTNVGSPTCEYMVHVEEPKGVKVRVEPKVLKFQKARERLSYTV 738
Query: 733 TF--VSLRGASNESFGSLTWVSGKYAVKSPIAVTWQ 766
T+ + R +S+ SFG L W+ KY V+SPIAVTW+
Sbjct: 739 TYDAEASRNSSSSSFGVLVWICDKYNVRSPIAVTWE 774
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1820 (645.7 bits), Expect = 1.0e-187, P = 1.0e-187
Identities = 374/756 (49%), Positives = 491/756 (64%)
Query: 19 ASIGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSXXXXXXXXXXXXXILYA 78
+S Q TY++HM KS++ ++ S +Y++ + SI+ + +LY
Sbjct: 24 SSSSDQGTYIVHMAKSQMPSSFDLHS--NWYDSSLRSISDSAE-------------LLYT 68
Query: 79 YENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGL-ESGIGLWDATN 137
YENAI GFS +L+ ++ SL T G +S P+ LHTT +P FLGL E L+
Sbjct: 69 YENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAG 128
Query: 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFK 197
DV+VGV+DTG+WPE ++ D G P+PS WKGGCE GT F+ S CN KLIGAR F +
Sbjct: 129 SYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFAR 188
Query: 198 GYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIA 257
GYES +G I+E+ + RSPRD GHGTHT+STAAG++V A+L G A G A GM +R+A
Sbjct: 189 GYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVA 248
Query: 258 AYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSGVFV 317
YK CW GC SSDILAAIDKA+A YYRD VAI +F A + G+ V
Sbjct: 249 VYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILV 308
Query: 318 SCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG--SKQ 375
SCSAGN+GPS S++ N APWI TV A DR FPA+ LGNG +F G SL+ G+ K
Sbjct: 309 SCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKL 368
Query: 376 LPLVF-GKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434
LP ++ G + + C+ G+L + VKGKIV+C RG+N+R KG+ VK AGG GM+L
Sbjct: 369 LPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILA 428
Query: 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAPVIAS 493
N+ GEEL+ADAH+LPA T+G AG ++ YV + PTASI GTV G P+PV+A+
Sbjct: 429 NTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAA 488
Query: 494 FSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHV 553
FSSRGP+ + +++KPD+ APGVNILAAW P+ L SD RRV FNIISGTSMSCPHV
Sbjct: 489 FSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHV 548
Query: 554 SGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG-GSSDTPLATAFAFGSGHV 612
SGLAALLKSVH +WS AAI+SALMTTAY P+ D+ G TP F G+GHV
Sbjct: 549 SGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTP----FDHGAGHV 604
Query: 613 DPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSFA 672
P +A++PGLIYD+ TEDYL +LC+LNYTS Q+ + N+TC ++ LNYPSFA
Sbjct: 605 SPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFA 664
Query: 673 VNFKGNVKNMSLEYERSVTNVGTSYCTYAVKV-EEPNGVLVTITPPILSFQKIGEILSYK 731
VN G V + +Y R+VT+VG + TY+VKV E GV +++ P +L+F++ E SY
Sbjct: 665 VNVDG-VG--AYKYTRTVTSVGGAG-TYSVKVTSETTGVKISVEPAVLNFKEANEKKSYT 720
Query: 732 VTFV--SLRGASNESFGSLTWVSGKYAVKSPIAVTW 765
VTF S + + + SFGS+ W GK+ V SP+A++W
Sbjct: 721 VTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1770 (628.1 bits), Expect = 2.0e-182, P = 2.0e-182
Identities = 355/755 (47%), Positives = 483/755 (63%)
Query: 21 IGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSXXXXXXXXXXXXXILYAYE 80
I + TYVIHMDKS + ++ + Q+Y + I+S+ + S ILY Y+
Sbjct: 31 ISTKKTYVIHMDKSAMPLPYT--NHLQWYSSKINSVTQHKSQEEEGNNNR----ILYTYQ 84
Query: 81 NAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLE--SGIGLWDATNL 138
A G +A+L+ ++ + LE DG ++ P+ LHTT SP FLGLE +W
Sbjct: 85 TAFHGLAAQLTQEEAERLEEEDGVVAVIPETRYELHTTRSPTFLGLERQESERVWAERVT 144
Query: 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG 198
DV+VGV+DTGIWPE +F DTGM PVP+ W+G CE G +F + NCN K++GAR F++G
Sbjct: 145 DHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGACETGKRFLKRNCNRKIVGARVFYRG 204
Query: 199 YESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAA 258
YE+ G+I+E ++Y+SPRD GHGTHTA+T AG+ V ANLFG A G A GM +R+AA
Sbjct: 205 YEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAYGTARGMAQKARVAA 264
Query: 259 YKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSGVFVS 318
YK CW GC SSDIL+A+D+AVA Y RD+++IA+FGA + GVFVS
Sbjct: 265 YKVCWVGGCFSSDILSAVDQAVADGVQVLSISLGGGVSTYSRDSLSIATFGAMEMGVFVS 324
Query: 319 CSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG----SK 374
CSAGN GP ++ N +PWI TV AS DR FPA VK+G +F+G SLY G+ +K
Sbjct: 325 CSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRTFKGVSLYKGRTVLPKNK 384
Query: 375 QLPLVF-GKTAGVSG-AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGML 432
Q PLV+ G+ A +C++G+L+R+ V GKIVIC RG+ R KG+ VK AGG GM+
Sbjct: 385 QYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVICDRGVTPRVQKGQVVKRAGGIGMV 444
Query: 433 LLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAPVI 491
L N+ GEEL+AD+H+LPA +G GK +K+Y ++K+ TAS+ GT G P+PV+
Sbjct: 445 LTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKATASLEILGTRIGIKPSPVV 504
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
A+FSSRGP+ + +++KPD+ APGVNILAAW +PS L SD RRV FNI+SGTSMSCP
Sbjct: 505 AAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLSSDPRRVKFNILSGTSMSCP 564
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
HVSG+AAL+KS H DWS AAIKSALMTTAY +N P+ D G++ P ++ + G+GH
Sbjct: 565 HVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTDASGAA--P-SSPYDHGAGH 621
Query: 612 VDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAG-GNFTCPNPSAFHPGKLNYPS 670
+DP A+DPGL+YDI ++Y ++LC+ + + QL +F N TC + A +PG LNYP+
Sbjct: 622 IDPLRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTKHSNRTCKHTLAKNPGNLNYPA 681
Query: 671 FAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSY 730
+ F N ++ R+VTNVG +Y V V G VT+ P L+F + LSY
Sbjct: 682 ISALFPENTHVKAMTLRRTVTNVGPHISSYKVSVSPFKGASVTVQPKTLNFTSKHQKLSY 741
Query: 731 KVTFVSLRGASNESFGSLTWVSGKYAVKSPIAVTW 765
VTF + FG L W S + V+SP+ +TW
Sbjct: 742 TVTFRTRFRMKRPEFGGLVWKSTTHKVRSPVIITW 776
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
Identities = 345/700 (49%), Positives = 457/700 (65%)
Query: 75 ILYAYENAISGFSAKLSTKQLKSL-ETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLW 133
+LY Y + GFSA L + + SL + + L D L TLHTT +P FLGL S G+
Sbjct: 60 LLYTYTTSFHGFSAYLDSTEADSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVH 119
Query: 134 DATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGAR 193
D + + VI+GV+DTG+WPE +F DT MP +PS+WKG CE G+ F CN KLIGAR
Sbjct: 120 DLGSSSNGVIIGVLDTGVWPESRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGAR 179
Query: 194 AFFKGYESVVGR-INETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+F KG++ G + + SPRD GHGTHT++TAAG+ V NA+ G A G A GM
Sbjct: 180 SFSKGFQMASGGGFSSKRESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMAT 239
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQ 312
+R+A YK CWS GC SDILAA+D+A+ PYYRDT+AI +F A +
Sbjct: 240 RARVATYKVCWSTGCFGSDILAAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAME 299
Query: 313 SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG-- 370
GVFVSCSAGNSGP+ ++V N APW+MTV A DR FPA LGNG G SLYSG
Sbjct: 300 RGVFVSCSAGNSGPTRASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSGVG 359
Query: 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAG 430
G+K L LV+ K S + C+ GSL+ +V+GKIV+C RG+N+R KG V+ AGG G
Sbjct: 360 MGTKPLELVYNK-GNSSSSNLCLPGSLDSSIVRGKIVVCDRGVNARVEKGAVVRDAGGLG 418
Query: 431 MLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAP 489
M++ N+ GEEL+AD+H+LPA +G G +++YV S +PTA +VFKGTV P+P
Sbjct: 419 MIMANTAASGEELVADSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVKPSP 478
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
V+A+FSSRGP+ V +++KPDV PGVNILA W P+ L D RR FNI+SGTSMS
Sbjct: 479 VVAAFSSRGPNTVTPEILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMS 538
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGS 609
CPH+SGLA LLK+ H +WS +AIKSALMTTAY L+N N+P+ D ++D L+ +A GS
Sbjct: 539 CPHISGLAGLLKAAHPEWSPSAIKSALMTTAYVLDNTNAPLHD---AADNSLSNPYAHGS 595
Query: 610 GHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQL-ALFAGGNFTCPNPSAFHPGKLNY 668
GHVDP+ A PGL+YDI+TE+Y+ +LCSL+YT + A+ + C + PG+LNY
Sbjct: 596 GHVDPQKALSPGLVYDISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKKFS-DPGQLNY 654
Query: 669 PSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEIL 728
PSF+V F G K + + Y R VTNVG + Y V V V +++ P LSF+ +GE
Sbjct: 655 PSFSVLFGG--KRV-VRYTREVTNVGAASSVYKVTVNGAPSVGISVKPSKLSFKSVGEKK 711
Query: 729 SYKVTFVSLRGAS--NES-FGSLTWVSGKYAVKSPIAVTW 765
Y VTFVS +G S N++ FGS+TW + ++ V+SP+A +W
Sbjct: 712 RYTVTFVSKKGVSMTNKAEFGSITWSNPQHEVRSPVAFSW 751
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
Identities = 348/751 (46%), Positives = 466/751 (62%)
Query: 26 TYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSXXXXXXXXXXXXXILYAYENAISG 85
TY++ M AA+ P S ++E ++ SS I+Y YE A G
Sbjct: 33 TYIVQM-----AASEMPSSFDFYHEWYASTVKSVSSSQLEDEEDDASTRIIYNYETAFHG 87
Query: 86 FSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIG--LWDATNLAKDVI 143
F+A+L ++ + + DG L+ P+ +L LHTT SP FLG+ + +W + DV+
Sbjct: 88 FAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGPEVSNRIWSDSLADHDVV 147
Query: 144 VGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVV 203
VGV+DTGIWPE +F D G+ PVP++WKG C+ G F+ +NCN K++GAR F+ GYE+
Sbjct: 148 VGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCNRKIVGARIFYNGYEASS 207
Query: 204 GRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACW 263
G INET + +SPRD GHGTHTA+TAAG+ V +ANL+G A G A GM +R+AAYK CW
Sbjct: 208 GPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVARGMAPRARVAAYKVCW 267
Query: 264 SLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSGVFVSCSAGN 323
+ GC SSDILAA+D+AV+ YY D+++IASFGA Q GVFV+CSAGN
Sbjct: 268 AGGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAMQMGVFVACSAGN 327
Query: 324 SGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG----KGSKQLPLV 379
+GP ++ N +PWI TV AS DR FPA V LGNG + G SLY G +Q P+V
Sbjct: 328 AGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSLYKGLRNLSPQEQYPVV 387
Query: 380 F--GKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSD 437
+ G ++ C+ G+L V GKIVIC RG++ R KG+ VK AGG GM+L N+
Sbjct: 388 YLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKGQVVKEAGGIGMILANTA 447
Query: 438 KEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAPVIASFSS 496
GEEL+AD+H+LPA +G + G A K Y S +PTA++ F GT G P+PV+A+FSS
Sbjct: 448 ANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATLSFGGTKLGIRPSPVVAAFSS 507
Query: 497 RGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGL 556
RGP+++ +++KPDV APGVNILAAW SPS L SD RRV FNI+SGTSMSCPHV+G+
Sbjct: 508 RGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVGFNILSGTSMSCPHVAGV 567
Query: 557 AALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG-GSSDTPLATAFAFGSGHVDPE 615
AAL+K+ H DWS A IKSALMTTAY +N P+ D G + TP F G+GH+ P
Sbjct: 568 AALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKASTP----FEHGAGHIHPV 623
Query: 616 SASDPGLIYDIATEDYLDYLCSLNYTSLQLALFA-GGNFTCPNPSAFHPGKLNYPSFAVN 674
A PGL+YDI DYL++LC+ + T +QL F N TC + + LNYP+ +V
Sbjct: 624 RALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFS-SASDLNYPAISVV 682
Query: 675 FKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTF 734
F + + +L R+VTNVG TY VKV + G V + P L F + LSYKVT
Sbjct: 683 F-ADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVIVEPNTLHFVSTNQKLSYKVTV 741
Query: 735 VSLRGASNESFGSLTWVSGKYAVKSPIAVTW 765
+ FG+L+W G + V+SP+ +TW
Sbjct: 742 TTKAAQKAPEFGALSWSDGVHIVRSPVVLTW 772
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
Identities = 350/715 (48%), Positives = 455/715 (63%)
Query: 75 ILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESG--IGL 132
I++ Y+ GFSA+L+++ L +S P+++ LHTT SP FLGL S GL
Sbjct: 62 IIHTYDTVFHGFSARLTSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKAGL 121
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
+ ++ D+++GVIDTG+WPE +F D G+ PVP +WKG C F +S CN KL+GA
Sbjct: 122 LEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGA 181
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
R F GYE+ G++NET ++RSPRD+ GHGTHTAS +AG V A+ G A G AAGM
Sbjct: 182 RFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAP 241
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQ 312
+R+AAYK CW+ GC SDILAA D AVA PYY D +AI +FGA
Sbjct: 242 KARLAAYKVCWNSGCYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIGAFGAID 301
Query: 313 SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG 372
G+FVS SAGN GP TV N APW+ TV A DR FPA VKLGNG G S+Y G G
Sbjct: 302 RGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPG 361
Query: 373 ---SKQLPLVFGKTA-GVSG--AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLA 426
+ PLV+G + G G + C+ GSL+ LVKGKIV+C RG+NSR KGE V+
Sbjct: 362 LDPGRMYPLVYGGSLLGGDGYSSSLCLEGSLDPNLVKGKIVLCDRGINSRATKGEIVRKN 421
Query: 427 GGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVN------STKRPTASIVFK 480
GG GM++ N +GE L+AD HVLPA ++GAS G +++Y++ S+K PTA+IVFK
Sbjct: 422 GGLGMIIANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKSRSSKHPTATIVFK 481
Query: 481 GTVFG-NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539
GT G PAPV+ASFS+RGP+ +++KPDV APG+NILAAWP PS + SD+RR
Sbjct: 482 GTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRIGPSGVTSDNRRTE 541
Query: 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDT 599
FNI+SGTSM+CPHVSGLAALLK+ H DWS AAI+SAL+TTAYT++N P+ D + +T
Sbjct: 542 FNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNSGEPMMDES-TGNT 600
Query: 600 PLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPS 659
++ +GSGHV P A DPGL+YDI + DY+++LC+ NYT + C
Sbjct: 601 --SSVMDYGSGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTITRRQADCDGAR 658
Query: 660 -AFHPGKLNYPSFAVNFK--GNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITP 716
A H G LNYPSF+V F+ G K MS + R+VTNVG S Y +K+ P G VT+ P
Sbjct: 659 RAGHVGNLNYPSFSVVFQQYGESK-MSTHFIRTVTNVGDSDSVYEIKIRPPRGTTVTVEP 717
Query: 717 PILSFQKIGEILSY----KVTFVSLR-GASNESFGSLTWVSGKYAVKSPIAVTWQ 766
LSF+++G+ LS+ K T V L GA+N G + W GK V SP+ VT Q
Sbjct: 718 EKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVTSPLVVTLQ 772
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
Identities = 355/766 (46%), Positives = 477/766 (62%)
Query: 18 IASIGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSXXXXXXXXXXXXXILY 77
+ + ++ TY++HM KS + A + ++Y A + S++ +LY
Sbjct: 17 VVAAEERATYIVHMAKSAMPAEYGDDH-GEWYGASLRSVS-------------GAGKMLY 62
Query: 78 AYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLWDATN 137
AY+ + GFSA+L+ ++ + + +DG L+ P+ LHTT +P FLG+ GL+ +
Sbjct: 63 AYDTVLHGFSARLTAREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGNDGLFPQSG 122
Query: 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFK 197
A DV+VGV+DTG+WPE ++ D G+ VPS WKG C GT F+ S CN KL+GAR F +
Sbjct: 123 TAGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFFNR 182
Query: 198 GYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIA 257
GYE+ +G ++ T + RSPRD GHGTHT+STAAG V+ A+L G A G A GM +R+A
Sbjct: 183 GYEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVA 242
Query: 258 AYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSGVFV 317
YK CW GC SSDILA +D AVA Y RD+VAI +F A + V V
Sbjct: 243 VYKVCWLGGCFSSDILAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLV 302
Query: 318 SCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG--SKQ 375
SCSAGN+GP ST+ N APWI TV A DR FPA V LGNG ++ G SLY+GK S
Sbjct: 303 SCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTP 362
Query: 376 LPLVFGKTAGVSGA-EYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434
LP+V+ A S A C+ G+L + V GKIV+C RG+++R KG V+ AGGAGM+L
Sbjct: 363 LPIVYAANASNSTAGNLCMPGTLTPEKVAGKIVVCDRGVSARVQKGFVVRDAGGAGMVLS 422
Query: 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGT-VFGNPAPVIAS 493
N+ GEEL+ADAH+LPAA +GA G A+K YV S PTA+IV GT V P+PV+A+
Sbjct: 423 NTATNGEELVADAHLLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVVAA 482
Query: 494 FSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHV 553
FSSRGP+++ +++KPD+ APGVNILAAW P+ + +D RRV FNIISGTSMSCPHV
Sbjct: 483 FSSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHV 542
Query: 554 SGLAALLKSVHEDWSTAAIKSALMTTAYTLN---NRNSPIADVGGSSDTPLATAFAFGSG 610
SGLAALL+S H +WS AA++SALMTTAY+ +P+ D ++ P AT F +G+G
Sbjct: 543 SGLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDANPLLDA--ATGAP-ATPFDYGAG 599
Query: 611 HVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGG-NFTCPNPSAFHPGKLNYP 669
HVDP SA DPGL+YD+ T DY+D+LC+LNYTS +A A ++ C A+ LNYP
Sbjct: 600 HVDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIAAVARSKSYGCTEGKAYSVYNLNYP 659
Query: 670 SFAVNFK---------GNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILS 720
SFAV + ++ + R++TNVG + TY V GV V + P L+
Sbjct: 660 SFAVAYSTASSQAAESSGAAATTVTHRRTLTNVGAAG-TYKVSAAAMPGVAVAVEPTELA 718
Query: 721 FQKIGEILSYKVTFVSLRGASNES-FGSLTWVSGKYAVKSPIAVTW 765
F GE SY V+F + S + FG L W GK++V SP+A TW
Sbjct: 719 FTSAGEKKSYTVSFTAKSQPSGTAGFGRLVWSDGKHSVASPMAFTW 764
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| UNIPROTKB|Q8LSS2 OSJNBa0011L09.20 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 5.4e-173, P = 5.4e-173
Identities = 350/715 (48%), Positives = 445/715 (62%)
Query: 75 ILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGI---G 131
+LY+Y A GF+A L L L G L PDE+ LHTT +P FLGL S
Sbjct: 65 LLYSYSAAAHGFAAALLPHHLPLLRASPGVLQVVPDEVFDLHTTRTPEFLGLLSPAYQPA 124
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+ DV++GV+DTG+WPE +F +PP P+RWKG CE G FS S C KL+G
Sbjct: 125 IHGFEAATHDVVIGVLDTGVWPESPSFAGGDLPPPPARWKGVCEAGVDFSPSVCGRKLVG 184
Query: 192 ARAFFKGYESVVGRINETV-------DYRSPRDAQGHGTHTASTAAGNIVANANLFGLAR 244
AR+F +G + G + S RD GHGTHTA+TAAG +VANA+L G A
Sbjct: 185 ARSFSRGLRAANGGGGGGARGGVGRKGFVSARDRDGHGTHTATTAAGAVVANASLLGYAT 244
Query: 245 GKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVA 304
G A GM +R+AAYK CW GC SDILA ID AVA PY+RDTVA
Sbjct: 245 GTARGMAPGARVAAYKVCWPEGCLGSDILAGIDAAVADGVGVLSLSLGGGSAPYFRDTVA 304
Query: 305 IASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEG 364
+ +FGA +GVFV+CSAGNSGPS +TV N+APW+ TV A DR FPA V L G G
Sbjct: 305 VGAFGAAAAGVFVACSAGNSGPSGATVANSAPWVATVGAGTLDRDFPAYVTLPTGARLAG 364
Query: 365 SSLYSGKGSK----QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKG 420
SLY+G LPLV+G G + + C+ G+L+ V+GKIV+C RG+N+R KG
Sbjct: 365 VSLYAGPSPSPRPAMLPLVYGG-GGDNASRLCLPGTLDPAAVRGKIVLCDRGVNARVEKG 423
Query: 421 EQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVN-----STKRPTA 475
VK AGGAGM+L N+ GEEL+AD+H+LPA +G AG +++Y + P A
Sbjct: 424 AVVKAAGGAGMVLANTAASGEELVADSHLLPAVAVGKLAGDKIREYASRRAAGGAGAPMA 483
Query: 476 SIVFKGTVFG-NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSD 534
+ F GTV G P+PV+A+FSSRGP+ V +++KPD+ PGVNILA W P+ L D
Sbjct: 484 ILSFGGTVLGVRPSPVVAAFSSRGPNTVVPEILKPDMIGPGVNILAGWSGVAGPTGLVKD 543
Query: 535 DRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG 594
RR FNIISGTSMSCPH+SG+AALLK+ H +WS AAIKSALMTTAYT++N NS + D
Sbjct: 544 GRRTHFNIISGTSMSCPHISGVAALLKAAHPEWSPAAIKSALMTTAYTVDNTNSSLRDAA 603
Query: 595 GSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAG-GNF 653
G LAT FAFG+GHVDP+ A PGL+YDI+T+DY+ +LCSLNYT+ + + N
Sbjct: 604 GGL---LATPFAFGAGHVDPQKALSPGLLYDISTKDYVSFLCSLNYTTPHIQVITKMSNI 660
Query: 654 TCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVT 713
TCP F PG LNYPSF+V FK K++ + + R VTNVG + Y VKV P V V
Sbjct: 661 TCPRK--FRPGDLNYPSFSVVFKKKSKHV-MRFRREVTNVGPAMSVYNVKVSGPASVSVK 717
Query: 714 ITPPILSFQKIGEILSYKVTFVSLRGASNES--FGSLTWVSGKYAVKSPIAVTWQ 766
+TP L F K+G+ Y V F S ASN FG ++W+S ++ V+SPIA TW+
Sbjct: 718 VTPAKLVFNKVGQKQRYYVIFASTVDASNAKPDFGWISWMSSQHVVRSPIAYTWK 772
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| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
Identities = 346/710 (48%), Positives = 453/710 (63%)
Query: 75 ILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLWD 134
+LY+Y A+ GFSA+LS Q +L +S PD+ +HTT++P FLG GLW
Sbjct: 69 LLYSYSRAVHGFSARLSPIQTAALRRHPSVISVIPDQAREIHTTHTPAFLGFSQNSGLWS 128
Query: 135 ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARA 194
+N +DVIVGV+DTGIWPEH +F D+G+ P+PS WKG CE G F S+CN KLIGARA
Sbjct: 129 NSNYGEDVIVGVLDTGIWPEHPSFSDSGLGPIPSTWKGECEIGPDFPASSCNRKLIGARA 188
Query: 195 FFKGYESVVG--RINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
F++GY + + + + RSPRD +GHGTHTASTAAG++VANA+L+ ARG A GM
Sbjct: 189 FYRGYLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGMAS 248
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXX-XRP-YYRDTVAIASFGA 310
+RIAAYK CW+ GC SDILAA+D+AVA P Y+ D++AI +FGA
Sbjct: 249 KARIAAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAIGAFGA 308
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370
T+ G+ VSCSAGNSGP+ T N APWI+TV AS DR F A G+G F G+SLY+G
Sbjct: 309 TRHGIVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGDGKVFTGTSLYAG 368
Query: 371 KG--SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGG 428
+ QL LV+ +G G+ C G LN LV+GKIV+C RG N+R KG VKLAGG
Sbjct: 369 ESLPDSQLSLVY---SGDCGSRLCYPGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGG 425
Query: 429 AGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGN-- 486
AGM+L N+ + GEEL AD+H++PA +GA AG ++ Y+ ++ PTA I F GT+ G
Sbjct: 426 AGMILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSP 485
Query: 487 PAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
P+P +A+FSSRGP+ + ++KPDV APGVNILA W P+ L D RRV FNIISGT
Sbjct: 486 PSPRVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGT 545
Query: 547 SMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG-GSSDTPLATAF 605
SMSCPHVSGLAALL+ H DWS AAIKSAL+TTAY + N PI D+ G S + +F
Sbjct: 546 SMSCPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKS----SNSF 601
Query: 606 AFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNF---TCPNPSAFH 662
G+GHVDP A +PGL+YDI ++Y+ +LC++ Y + +F C
Sbjct: 602 IHGAGHVDPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACETSKLRT 661
Query: 663 PGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSY-CTYAVKVEEPNGVLVTITPPILSF 721
G LNYPSF+V F + ++Y+R V NVG++ Y V V+ P V + ++P L+F
Sbjct: 662 AGDLNYPSFSVVFASTGE--VVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSKLAF 719
Query: 722 QKIGEILSYKVTFVS--LRGA----SNESFGSLTWVSGKYAVKSPIAVTW 765
K +L Y+VTF S L G FGS+ W G++ VKSP+AV W
Sbjct: 720 SKEKSVLEYEVTFKSVVLGGGVGSVPGHEFGSIEWTDGEHVVKSPVAVQW 769
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| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
Identities = 354/753 (47%), Positives = 464/753 (61%)
Query: 22 GKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSXXXXXXXXXXXXXILYAYEN 81
G++ TY++HM +S A + ++Y A + S++ ++ +LY Y+
Sbjct: 32 GERRTYIVHMSRS--AKPNDFVEHGEWYAASLQSVSDAAT-------------VLYTYDT 76
Query: 82 AISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGLWDATNLAKD 141
+ G+SA+L+ + ++LE+ G L P+ LHTT +P FLGL+ L+ +N D
Sbjct: 77 IVHGYSARLTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSD 136
Query: 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201
VIVGV+DTG+WPE ++ D G+ PVP+ WKG CEEG F+ S CN KLIGAR F GYE+
Sbjct: 137 VIVGVLDTGVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEA 196
Query: 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKA 261
G ++ + + RSPRD GHGTHT+STAAG+ V A+L G A G A GM +R+A YK
Sbjct: 197 AKGPVDTSKESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKV 256
Query: 262 CWSLGCSSSDILAAIDKAVAXXXXXXXXXXXXXXRPYYRDTVAIASFGATQSGVFVSCSA 321
CW GC SSDIL A++ AV YYRD++A+ ++ A + G+FVSCSA
Sbjct: 257 CWVGGCFSSDILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSA 316
Query: 322 GNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVF- 380
GN+GP +T+ N APWI TV A DR FPA V LGNG ++ G SLYSGK P+ F
Sbjct: 317 GNAGPGSATLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPVPFI 376
Query: 381 --GKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDK 438
G + S C++GSL + V GKIV+C RG N+R KG VK AGGAGM+L N+
Sbjct: 377 YAGNASNSSMGALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLANTAA 436
Query: 439 EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAPVIASFSSR 497
GEEL+ADAHVLP A +G AG ++ Y S PTASIVF GT G P+PV+A+FSSR
Sbjct: 437 NGEELVADAHVLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAFSSR 496
Query: 498 GPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLA 557
GP+ V ++KPD+ APGVNILAAW + PS L D RRV FNIISGTSMSCPHVSGLA
Sbjct: 497 GPNTVTPGILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVSGLA 556
Query: 558 ALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESA 617
ALL++ H+DWS AAI+SALMTT+Y + I DV ++ P AT G+GHVDP A
Sbjct: 557 ALLRAAHQDWSPAAIRSALMTTSYNGYPNGNGILDV--ATGLP-ATPLDVGAGHVDPSKA 613
Query: 618 SDPGLIYDIATEDYLDYLCSLNYTSLQLA-LFAGGNFTCPNPSAFHPGKLNYPSFAVNFK 676
DPGL+YDIA DY+D+LC+++Y +Q+A L C + LNYPSF+V F
Sbjct: 614 VDPGLVYDIAAADYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTFP 673
Query: 677 GNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNG---VLVTITPPILSFQKIGEILSYKVT 733
+ ++ R+VTNVG TY V G V V++ P L+F K GE SY V+
Sbjct: 674 AT--GGTEKHTRTVTNVGQPG-TYKVTASAAAGSTPVTVSVEPSTLTFTKSGEKQSYTVS 730
Query: 734 FVSLRGASNES-FGSLTWVSGKYAVKSPIAVTW 765
F + S + FG L W S + V SPIAVTW
Sbjct: 731 FAAAAMPSGTNGFGRLVWSSDHHVVSSPIAVTW 763
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_XIV0957 | hypothetical protein (757 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 766 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-112 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 4e-34 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 8e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-25 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-20 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-18 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-15 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-15 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-14 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-14 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 6e-13 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 7e-13 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 4e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 9e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-09 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-09 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 6e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 7e-08 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-07 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-07 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 5e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 5e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 8e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-06 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-06 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 6e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 6e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 3e-05 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 3e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 3e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 4e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 6e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 0.001 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.001 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.002 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.002 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-112
Identities = 132/235 (56%), Positives = 158/235 (67%), Gaps = 4/235 (1%)
Query: 113 LTLHTTYSPHFLGLESGIGLWD--ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRW 170
LHTT SP FLGL G A N + +I+GV+DTGIWPEH +F D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 171 KGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAA 230
G C G F+ +CNNKLIGAR F GY++ G N +YRSPRD GHGTHTASTAA
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAA 119
Query: 231 GNIVANANLFGLARGKAAGMRYTSRIAAYKACW-SLGCSSSDILAAIDKAVADGVDVLSL 289
GN+V NA++ G A G A+G+ +RIA YK CW GC SDILAAID+A+ADGVDV+S
Sbjct: 120 GNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISY 179
Query: 290 SLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAAS 344
S+GG S Y D +AIA A ++G+FV+ SAGNSGP STV N APW+ TVAAS
Sbjct: 180 SIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 4e-34
Identities = 54/101 (53%), Positives = 62/101 (61%), Gaps = 12/101 (11%)
Query: 481 GTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLF 540
TV N AP + + V +KPD+ APGV+ILAAW T D R F
Sbjct: 219 STV-PNVAPWVTT--------VAASTLKPDIAAPGVDILAAW---TPEGADPGDARGEDF 266
Query: 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581
ISGTSM+ PHV+G+AALLKS H DWS AAIKSALMTTAY
Sbjct: 267 AFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-33
Identities = 62/126 (49%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 354 VKLGNGHSFEGSSLYSGKGSKQLPLVFGKT-AGVSGAEYCINGSLNRKLVKGKIVICQRG 412
V LGNG + G SLY G PLV+ +G A C+ GSL+ VKGKIV+C RG
Sbjct: 2 VTLGNGKTIVGQSLYPGNLKT-YPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG 60
Query: 413 LN-SRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTK 471
N SR KG+ VK AGGAGM+L N +G +++ADAHVLPA + G A+ Y+NST
Sbjct: 61 GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS 120
Query: 472 RPTASI 477
PTA+I
Sbjct: 121 NPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 35/219 (15%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
K V V VIDTGI H G P N+K+ G F
Sbjct: 2 KGVKVAVIDTGIDYTHPDLGGPGFP---------------------NDKVKGGYDFVDDD 40
Query: 200 ESVVGRINETVDYR--SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIA 257
+ S DA GHGTH A AGN G+ G G+ + +
Sbjct: 41 YDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLY 92
Query: 258 AYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVF 316
AYK G ++ I+AAI++AV DG+DV++LSLG S D AIA A ++GV
Sbjct: 93 AYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPD-DPDAIAINNAVKAGVV 151
Query: 317 VSCSAGNSGPSISTVDN--TAPWIMTVAASYTDRSFPAI 353
V +AGNSGP+ T+ + TAP +TV AS A
Sbjct: 152 VVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEAD 190
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 50/131 (38%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 487 PAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
A + SSRGP IKPD+ APGV+I++ P + + + +SGT
Sbjct: 188 EADTVGPSSSRGPPTSD-SAIKPDIVAPGVDIMSTAPGSGTG-----------YARMSGT 235
Query: 547 SMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
SM+ PHV+G AALLK H DWS A IK+ALM TA L + SD +
Sbjct: 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYD-----------SDGVVYPVSR 284
Query: 607 FGSGHVDPESA 617
G+G VD A
Sbjct: 285 QGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 62/241 (25%), Positives = 89/241 (36%), Gaps = 63/241 (26%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
K + V V+DTGI H F I A F
Sbjct: 2 KGITVAVLDTGIDAPHPDFDG----------------------------RIIRFADF--- 30
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
+N +P D GHGTH A AG+ A + GK G+ + +
Sbjct: 31 ------VNTVNGRTTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGV 77
Query: 260 KACWSLG-CSSSDILAAIDKAVAD----GVDVLSLSLGGSSRPYYRDTVAI-ASFGATQS 313
K G S SDI+A ID V + + V++LSLG P Y + A +
Sbjct: 78 KVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDA 137
Query: 314 GVFVSCSAGNSGPSISTVDN--TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGK 371
G+ V +AGNSGP T+ + +P ++TV A D + P + +S +
Sbjct: 138 GIVVVVAAGNSGPGPGTITSPGNSPKVITVGA--VDDNGPHDDGISY---------FSSR 186
Query: 372 G 372
G
Sbjct: 187 G 187
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
I+ FSSRGP+ G IKPDV APG NI++ +P + SGTSM+
Sbjct: 180 ISYFSSRGPTGDGR--IKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSMAT 233
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581
PHVSG ALL + + +K L TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 2e-18
Identities = 58/211 (27%), Positives = 73/211 (34%), Gaps = 48/211 (22%)
Query: 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201
V V VIDTG+ P+H E G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENG------------------------ 36
Query: 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKA 261
P D GHGTH A A + G G+ +++ K
Sbjct: 37 ----------PTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKV 77
Query: 262 CWSLG-CSSSDILAAIDKAVAD-GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSC 319
G SSSDI AAID A AD G DV++LSLGG P + + GV V
Sbjct: 78 LDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVA 137
Query: 320 SAGNSGPSISTVDN---TAPWIMTVAASYTD 347
+AGN GP T +P ++ V A D
Sbjct: 138 AAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IA FS+ G D IKPD+ APG NIL++ P ++ SGTSM+
Sbjct: 177 IADFSNYGGP---VDGIKPDIVAPGGNILSSGPGGDLGG----------YDSHSGTSMAA 223
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRN 587
P V+G AALL S + + +++ L+TTA L +
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 62/193 (32%), Positives = 78/193 (40%), Gaps = 43/193 (22%)
Query: 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFK 197
K V V V+DTGI H A GGC G
Sbjct: 11 TGKGVKVAVVDTGIDYTHPAL-------------GGC---------------FGPGCKVA 42
Query: 198 GYESVVG----RINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYT 253
G VG N V P D QGHGTH A G I AN N +G G A
Sbjct: 43 GGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVA----GIIAANPNAYGFT-GVAPE---- 93
Query: 254 SRIAAYKACWSLGCSSSD-ILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQ 312
+ + AY+ G ++ D I+AA +A DG DV++ SLGG S D A+ +
Sbjct: 94 ATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGW-SEDPWAVVASRIVD 152
Query: 313 SGVFVSCSAGNSG 325
+GV V+ +AGN G
Sbjct: 153 AGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 59/218 (27%), Positives = 76/218 (34%), Gaps = 54/218 (24%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
WD T + V V V+DTG+ P H
Sbjct: 22 WDITGGS-GVTVAVVDTGVDPTHPDL--------------------------------LK 48
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
F GY+ V + D GHGTH A A N N G AG+
Sbjct: 49 VKFVLGYDFVDNDSD-------AMDDNGHGTHVAGIIAAA--TN-NGTG-----VAGVAP 93
Query: 253 TSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGAT 311
++I K + G S +DI I A G V++LSLGG + A A
Sbjct: 94 KAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGG---GLGSTALQEAINYAW 150
Query: 312 QSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
GV V +AGN G S + P + VAA TD+
Sbjct: 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAA--TDQD 186
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 20/95 (21%)
Query: 486 NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISG 545
+ +ASFS+ G V D+ APGV+IL+ P + +SG
Sbjct: 184 DSNDALASFSNYGKKTV-------DLAAPGVDILSTSPGGG-------------YGYMSG 223
Query: 546 TSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
TSM+ PHV+G AALL S++ + + A IK A++++A
Sbjct: 224 TSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
ASFSS GP + ++ APGV+IL+ +P + SGTSM+
Sbjct: 161 NRASFSSTGPEV--------ELAAPGVDILSTYPNNDYAYL-------------SGTSMA 199
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTT 579
PHV+G+AAL+ S + + A ++ AL T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 15/74 (20%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
V+A FSSRGPS G IKPD++APGVNI +A P S SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPGGGYGSS-------------SGTSMA 230
Query: 550 CPHVSGLAALLKSV 563
PHV+G+AALL S
Sbjct: 231 APHVAGVAALLWSA 244
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 467 VNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT 526
V ++ P+ S G + + +ASFSSRGP+ G IKPD+ APG IL+A
Sbjct: 177 VGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDG--RIKPDLVAPGTGILSARSGGG 234
Query: 527 SPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDW-----------STAAIKSA 575
+ SGTSM+ P V+G AALL+ + + S A +K+
Sbjct: 235 GIGDTSDSA----YTSKSGTSMATPLVAGAAALLR---QYFVDGYYPTKFNPSAALLKAL 287
Query: 576 LMTTA 580
L+ +A
Sbjct: 288 LINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IA FS RGP+ G IKPD+ APGVNIL A P + SGTS++
Sbjct: 359 IAIFSGRGPTRDG--RIKPDIAAPGVNILTASPGGG-------------YTTRSGTSVAA 403
Query: 551 PHVSGLAALL 560
V+G ALL
Sbjct: 404 AIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 49/219 (22%), Positives = 75/219 (34%), Gaps = 50/219 (22%)
Query: 143 IVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESV 202
VGV+DTGI H ++ N GY+ V
Sbjct: 1 TVGVLDTGIDVNHPDLSG------------------RYIGLAYRN----------GYDFV 32
Query: 203 VGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKAC 262
+ D D GHGTH A A + G+A +++ + K
Sbjct: 33 ----DNDPDPTPDDDNNGHGTHVAGIIAAGDNNGSGGVGVA--------PNAKLESVKVL 80
Query: 263 WSLGCSSSDILAAIDKAV--ADGVDVLSLSLGGSSRP---YYRDTVAIASFGATQSGVFV 317
G + S++ AI+ A + + V+++SLG P + +A GA G
Sbjct: 81 PGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLF 140
Query: 318 SCSAGNSGPSISTVDNTAP---W-IMTVAASYTDRSFPA 352
+AGN G + P I+TV A T+ A
Sbjct: 141 VVAAGNGGDYADNNPVSDPASANNIITVGA-VTENGTIA 178
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 488 APVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTS 547
A V + FSS GP+ +KPDV APG NIL+ +P + ++SGTS
Sbjct: 185 ASVDSYFSSWGPTNEL--YLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTS 231
Query: 548 MSCPHVSGLAALLKSV-HEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
M+ P+V+G AALL H S A ++ L +TA L + G S+ LA
Sbjct: 232 MATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD------GTSALPDLAPVAQ 285
Query: 607 FGSGHVD 613
G+G V+
Sbjct: 286 QGAGLVN 292
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 57/207 (27%), Positives = 83/207 (40%), Gaps = 56/207 (27%)
Query: 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYE 200
V V VIDTGI H + ++G F
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL---------------------------NIVGGANFTGD-- 31
Query: 201 SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYK 260
D +D GHGTH A G I A N G+ G+ + + A K
Sbjct: 32 ----------DNNDYQDGNGHGTHVA----GIIAALDNGVGVV-----GVAPEADLYAVK 72
Query: 261 ACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVS 318
G + SDI+A I+ A+ +G+D++++SLGG S P R+ + A +G+ V
Sbjct: 73 VLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVV 128
Query: 319 CSAGNSGPSISTVDNTA--PWIMTVAA 343
+AGNSG S+ D A P ++ V A
Sbjct: 129 AAAGNSGNGDSSYDYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 19/90 (21%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFS+ G + D+ APGV+IL+AW SD +SGTSM+
Sbjct: 183 RASFSNYGSCV--------DIFAPGVDILSAWI--------GSDT---ATATLSGTSMAA 223
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+GLAA L S+ D S A +K+ L+ A
Sbjct: 224 PHVAGLAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 58/197 (29%), Positives = 74/197 (37%), Gaps = 47/197 (23%)
Query: 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201
V V VID+GI P+H K S S+ ++
Sbjct: 2 VTVAVIDSGIDPDHPDL--------------------KNSISS------YSKNLVPKGGY 35
Query: 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYK- 260
ET D D GHGT A G I AN N+ G+A G G+ Y+
Sbjct: 36 DGKEAGETGDINDIVDKLGHGTAVA----GQIAANGNIKGVAPG--IGIVS------YRV 83
Query: 261 ACWSLGCSSSDILAAIDKAVADGVDVLSLSLGG---SSRPYYRDTVAIASFG-----ATQ 312
SS I+ AI A DGVDV++LSLGG Y D V ++ A
Sbjct: 84 FGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKS 143
Query: 313 SGVFVSCSAGNSGPSIS 329
G V +AGN G +S
Sbjct: 144 KGSIVVAAAGNDGLDVS 160
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
AS S S KPDV APGV++ +A + R +SGTSM+
Sbjct: 174 GASLVSAPDSPPDE-YTKPDVAAPGVDVYSA---RQGANGDGQYTR------LSGTSMAA 223
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581
PHV+G+AALL + H D S IK AL TAY
Sbjct: 224 PHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 60/249 (24%), Positives = 85/249 (34%), Gaps = 49/249 (19%)
Query: 143 IVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEE---------GTKFSQSNCNNKLIGAR 193
+V VID+G+ P H AF+ +++ E G + N K+
Sbjct: 14 VVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYY-----NEKVP--- 63
Query: 194 AFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYT 253
F Y I + D S HG H A AGN N G+ +G A
Sbjct: 64 -FAYNYADNNDDILDEDDGSS------HGMHVAGIVAGNGDEEDNGEGI-KGVA----PE 111
Query: 254 SRIAAYK---ACWSLGCSSSDILAAIDKAVADGVDVLSLSLG---GSSRPYYRDTVAIAS 307
+++ A K AI+ AV G DV+++SLG G + AI
Sbjct: 112 AQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKR 171
Query: 308 FGATQSGVFVSCSAGNSGPSISTVD----NTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363
A ++GV V +AGN G S S P TV + T + S
Sbjct: 172 --AREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA------SAN 223
Query: 364 GSSLYSGKG 372
G
Sbjct: 224 KKVPNPNGG 232
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
+ S+ G D+ APG +IL++ + +SGTSM+
Sbjct: 171 PASPSSNGGA--------GVDIAAPGGDILSSPTTGGGG-----------YATLSGTSMA 211
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTT 579
P V+G+AALL S + D + A +K+AL++T
Sbjct: 212 APIVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Query: 487 PAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
++ FSS GP+ +KPD+TAPG NI + T M SGT
Sbjct: 230 NGGQMSGFSSWGPTPDLD--LKPDITAPGGNIYSTVNDNTYGYM-------------SGT 274
Query: 547 SMSCPHVSGLAALLKS-VHEDWS-------TAAIKSALMTTA 580
SM+ PHV+G +AL+K + E + +K+ LM TA
Sbjct: 275 SMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILA 274
DA GHGTH + T G G A+G G+ + + K G S S I+A
Sbjct: 39 VFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQIIA 89
Query: 275 AIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNT 334
++ AV DV+S+SLGG+ A+ + Q+G SAGN G S +
Sbjct: 90 GMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSN-QTGALFVVSAGNEGHGTSGSPGS 148
Query: 335 APWIMTVAASYTDRS 349
A ++V A DR
Sbjct: 149 AYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 59/213 (27%), Positives = 85/213 (39%), Gaps = 37/213 (17%)
Query: 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG 198
+ DV+V VIDTG+ H +D + W E + N G
Sbjct: 1 SGDVVVAVIDTGVDYNHPDLKD-------NMWVNPGEIPG-NGIDDDGN----------G 42
Query: 199 YESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAA 258
Y + N + P D GHGTH A V N N G+A G+ + +I
Sbjct: 43 YVDDIYGWNFVNNDNDPMDDNGHGTHVAGIIGA--VGN-NGIGIA-----GVAWNVKIMP 94
Query: 259 YKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGG-SSRPYYRDTVAIASFGATQSGVF 316
K + G ++SD + AID AV G +++ S GG RD AIA A +G+
Sbjct: 95 LKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD--AIAR--AIDAGIL 150
Query: 317 VSCSAGNSGPSISTVD-----NTAPWIMTVAAS 344
+AGN G + I++VAA+
Sbjct: 151 FVAAAGNDGTNNDKTPTYPASYDLDNIISVAAT 183
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 51/196 (26%), Positives = 66/196 (33%), Gaps = 73/196 (37%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
V V V+DTGI H+ F G RA + G
Sbjct: 25 SGVDVYVLDTGIRTTHVEF--------------------------------GGRAIW-GA 51
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNI--VA-NANLFGLARGKAAGMRYTSRI 256
+ V D GHGTH A T G VA ANL +
Sbjct: 52 D--------FVGGDPDSDCNGHGTHVAGTVGGKTYGVAKKANLVAV-------------- 89
Query: 257 AAYKACWSLGCSS-SDILAAIDKAVADGVD-----VLSLSLGGS-SRPYYRDTVAIASFG 309
K G + S I+A ++ D V ++SLGG S D A+A+
Sbjct: 90 ---KVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTAL--DA-AVAA-- 141
Query: 310 ATQSGVFVSCSAGNSG 325
A +GV V +AGNS
Sbjct: 142 AVNAGVVVVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
ASFS+ G + DV+APG IL+ P M SGTSM+ P
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTTPDGDYAYM-------------SGTSMATP 228
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTA 580
HV+G+AALL S S + ++ AL TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 47/155 (30%), Positives = 62/155 (40%), Gaps = 32/155 (20%)
Query: 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSD 271
P D GHGTHT T GN G G A G R+ IA +A G + +D
Sbjct: 45 TPLPYDDNGHGTHTMGTMVGNDGD-----GQQIGVAPGARW---IAC-RALDRNGGNDAD 95
Query: 272 ILAAIDKAVA----DGV--------DVLSLSLGGSS--RPYYRDTVAIASFGATQSGVFV 317
L +A G DV++ S GG S + + VA +G+F
Sbjct: 96 YLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA----AWRAAGIFP 151
Query: 318 SCSAGNSGPSISTVDNTA---PWIMTVAASYTDRS 349
+AGN GP ST++ P V A TDR+
Sbjct: 152 VFAAGNDGPRCSTLNAPPANYPESFAVGA--TDRN 184
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
ASFSS GP+ G +KPDV A G I +GTS S
Sbjct: 185 NKASFSSIGPTADGR--LKPDVMALGTGIYVINGDGNITYA-------------NGTSFS 229
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
CP ++GL A L H +W+ IK A++ +A
Sbjct: 230 CPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 48/200 (24%), Positives = 61/200 (30%), Gaps = 59/200 (29%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
V VGVID+GI H F G S
Sbjct: 3 AGVKVGVIDSGIDLSHPEFA-----------------GRVSEASY--------------- 30
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
Y S D HGTH A A A + G G A + + +
Sbjct: 31 ----YVAVNDAGYASNGDGDSHGTHVAGVIA----AARDGGG-MHGVA----PDATLYSA 77
Query: 260 KACWSLGC--SSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIAS---------- 307
+A S G S +DI AA D A GV +++ S GG+ T S
Sbjct: 78 RASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLA 137
Query: 308 --FGATQSGVFVSCSAGNSG 325
A +G +AGN G
Sbjct: 138 ALARAANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-08
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 369 SGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGG 428
S G+ PLV+ +G C L VKGKIV+ +RG S K E + AG
Sbjct: 1 SPGGTGTGPLVYVGNGDDAG--GCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGA 58
Query: 429 AGMLLLNSDKEGEEL---IADAHVLPAATLGASAGKAV 463
AG+++ N+D G +P + G+A+
Sbjct: 59 AGVIIYNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 509 PDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAAL-----LKSV 563
D+ APGV+I++A P SM SGTSM+ PHV+G+AAL K+
Sbjct: 213 VDIAAPGVDIVSAAPGGGYRSM-------------SGTSMATPHVAGVAALWAEALPKAG 259
Query: 564 HEDWSTAAIKSALMTTAYTLNNRNSPIADVG 594
A +++ L T + D G
Sbjct: 260 GRAL-AALLQARLTAARTTQFAPGLDLPDRG 289
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 26 TYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISG 85
TY++ A AV S + + +++ + ILY+Y++ +G
Sbjct: 1 TYIVKFKDGVSKA------------AVFSSHKSWHASSKEEAAGAS---ILYSYKHGFNG 45
Query: 86 FSAKLSTKQLKSLETVDGFLSATPDELLTLH 116
F+AKL+ ++ + L PD+++ LH
Sbjct: 46 FAAKLTEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 35/126 (27%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
+SFS GP D+ APG NI++ P + SGTS + P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGDGLA------------TTSGTSFAAP 230
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611
VSG AAL++S D + A ++ + TA + G D G G
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATA-----DHPA----RGGRD------DYVGYGV 275
Query: 612 VDPESA 617
VDP +A
Sbjct: 276 VDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 59/218 (27%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFS-------QSNCNNKLIGA 192
K V+VG+IDTGI H F++ E+GT + Q+
Sbjct: 4 KGVLVGIIDTGIDYLHPEFRN--------------EDGT--TRILYIWDQTIPGGP--PP 45
Query: 193 RAFFKGYESVVGRINETV------DYRSPRDAQGHGTHTASTAAGNIVANANLFG----- 241
++ G E IN + D RD GHGTH A AAGN N + G
Sbjct: 46 GGYYGGGEYTEEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDFKGVAPEA 105
Query: 242 ------LARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAID--KAVADGVD---VLSLS 290
L + K + + Y +DI+ AI A ++ V+++S
Sbjct: 106 ELIVVKLKQAKKYLREFYEDVPFY--------QETDIMLAIKYLYDKALELNKPLVINIS 157
Query: 291 LGGSSRPYYRDTV---AIASFGATQSGVFVSCSAGNSG 325
LG + + ++ I + + G+ V AGN G
Sbjct: 158 LGTNFGSHDGTSLLERYIDAISRLR-GIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILA-AWPATTSPSMLKSD-DRRVLFNIISGTSM 548
AS+S+ GP++ DV+APG + + S + + + GTSM
Sbjct: 203 RASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSM 254
Query: 549 SCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579
+ PHV+G+AAL+KSV+ + A I+S L +T
Sbjct: 255 AAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ S+SSRGPS+ G KPD+ A G A S L D F++ GTSM+
Sbjct: 221 VVSWSSRGPSIAG--DPKPDLAAIGAFAWAPGRVLDSGGAL---DGNEAFDLFGGTSMAT 275
Query: 551 PHVSGLAALLKSVHEDWSTAA------IKSALMTTA 580
P +G AAL+ S ++ +++ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVN-ILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
ASFS+ G + D+ APGV IL+ P D + +SGTSM+
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMA 242
Query: 550 CPHVSGLAALLKSVHEDWSTA 570
PHVSG+AAL+ S D T
Sbjct: 243 APHVSGVAALVLSKFPDVFTP 263
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (124), Expect = 8e-07
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 17/187 (9%)
Query: 444 IADAHVLPAATLGASAGKA-VKKYVNSTKRPTASIVFK--GTVFGNPAPVIASFSSRGPS 500
+A A + A+AG P + + + +ASFS+ G
Sbjct: 268 LAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSP 327
Query: 501 LVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALL 560
D+ APGVNIL+ T P + +SGTSM+ PHVSG+AAL+
Sbjct: 328 ------TGVDIAAPGVNILSLSAVNTLP------GDGADYVTLSGTSMAAPHVSGVAALV 375
Query: 561 KSVH-EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD-TPLATAFAFGSGHVDPESAS 618
S + + + A +++ ++TTA GG ++ AT A G+ + +S
Sbjct: 376 LSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATDVAGGTLPANGTGSS 435
Query: 619 DPGLIYD 625
+
Sbjct: 436 QGAVEAP 442
|
Length = 508 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.5 bits (122), Expect = 1e-06
Identities = 59/289 (20%), Positives = 82/289 (28%), Gaps = 63/289 (21%)
Query: 116 HTTYSPHFLGLESGIGLWDA--TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGG 173
P G S L K V V VIDTG+ H +
Sbjct: 116 GVKPLPRGPGAISVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA----------- 164
Query: 174 CEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNI 233
+ F G D GHGTH A T A I
Sbjct: 165 ----------------VAGGDFVDG-----------DPEPPFLDDNGHGTHVAGTIAAVI 197
Query: 234 VANANLFGLA--RGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADG--VDVLSL 289
N K ++ SD+ I+ A G DV++L
Sbjct: 198 FDNGAGVAGVAPGAKLLLVKVLGSGGGSG-------ELSDVAEGIEGAANLGGPADVINL 250
Query: 290 SLGGSSRPYYRDTVAIA-SFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDR 348
SLGGS + A + A GV + +AGN G + S D P
Sbjct: 251 SLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYP---------ASY 301
Query: 349 SFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSL 397
P ++ +G + + +S GS + GV+ +L
Sbjct: 302 PAPNVIAVGALDLSDTVASFSNDGSPTGVDIA--APGVNILSLSAVNTL 348
|
Length = 508 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDIL 273
D GHGT A AA V N L AG+ +++ + SLG SDI
Sbjct: 36 TSDIDGHGTACAGVAAA--VGNNGL------GVAGVAPGAKLMPVRIADSLGYAYWSDIA 87
Query: 274 AAIDKAVADGVDVLSLSLGGS-SRPYYRDTV-AIASFGATQSGVFVSCSAGNSGPSISTV 331
AI A +G DV+S S GGS S + A++G G V +AGNSG S+S+
Sbjct: 88 QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSG 147
Query: 332 DNTAPWIMTVAAS 344
P ++ VAA+
Sbjct: 148 YAANPSVIAVAAT 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 33/148 (22%)
Query: 475 ASIVFKGTVFGNPAPVIASFSSRGPSLV----GHDVIKPDVTAP-GVNILAAWPATTSPS 529
A FG+ + SS P + KPDVTAP GVN P+
Sbjct: 153 AVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPN 212
Query: 530 MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSP 589
GTS + PH +G+AAL+ S + + A I+ AL +TA
Sbjct: 213 F-------------FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA--------- 250
Query: 590 IADVGGSSDTPLATAFAFGSGHVDPESA 617
D+G A GSG VD + A
Sbjct: 251 -LDMGEPGYDN-----ASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 203 VGRINETVDY---RSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
GR T + +D GHGTH A T G V +G+ARG
Sbjct: 27 AGRDITTKSFVGGEDVQDGHGHGTHCAGTIFGRDV-PGPRYGVARG-------AEIALIG 78
Query: 260 KACWSLGCSSSDILAAIDKAVADGVDVLSLSLG 292
K G ILA I AVA+G DV+S+SLG
Sbjct: 79 KVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCP 551
AS+S+ G + D+ APGV I W T + D + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI---WT-TGTGRGSAGDYPGGGYGSFSGTSFASP 214
Query: 552 HVSGLAALLKSVHEDWSTAAIKSALMTT 579
+G+AAL+ S + + + A ++ L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+A+FS+ G V DV APG I + P + SGTSM+
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYSTTPDNE-------------YETDSGTSMAA 260
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
P VSG+AAL+ S + + + +K ++ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTA 570
+ APG NI + P + + +SGTS + PHVSG AALL W TA
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKF-PWLTA 255
Query: 571 A-IKSALMTTA 580
++ L+TTA
Sbjct: 256 DQVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 44/219 (20%), Positives = 63/219 (28%), Gaps = 49/219 (22%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
K IVGV DTG+ H F D
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNFNKTNLF------------------------------ 36
Query: 200 ESVVGRINETVDY-RSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR-YTSRIA 257
+I + D GHGTH A AG +++ L +G A + Y I
Sbjct: 37 ---HRKIVRYDSLSDTKDDVDGHGTHVAGIIAGK-GNDSSSISLYKGVAPKAKLYFQDIG 92
Query: 258 AYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRD-TVAI--ASFGATQSG 314
S + + + + A G + S S G Y A ++
Sbjct: 93 DTSGNLSSPPDLNKLFSPMYDA---GARISSNSWGSPVNNGYTLLARAYDQFAYNNPD-- 147
Query: 315 VFVSC-SAGNSGPSISTVDNTAPW---IMTVAASYTDRS 349
+ SAGN G S + ++TV AS
Sbjct: 148 -ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSV 185
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 57/233 (24%), Positives = 77/233 (33%), Gaps = 56/233 (24%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
W+ +IV V+DTG+ H Q G
Sbjct: 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGD---------------------------- 33
Query: 192 ARAFFKGYESVVGRINETVDYRSP----RDAQGHGTHTASTAAGNIVANANLFGL----- 242
GY+ V N + GHGTH A T A N N G+
Sbjct: 34 ----GDGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAA---VNNNGGGVGGIAG 86
Query: 243 ARGKAAGMRYTS-RIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRD 301
A G A G++ S +I A + + AAI A +G +L S GG+ Y
Sbjct: 87 AGGVAPGVKIMSIQIFAGRY----YVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSP 142
Query: 302 TV--AIASF-----GATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTD 347
+ A F G+ G V SAGNS P ++ VAA T+
Sbjct: 143 LLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 491 IASFSSRGPSL----VGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGT 546
IA FSSRG + G+ +KPD+ G + S LK R +SGT
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYG--------SKLKGGCRA-----LSGT 212
Query: 547 SMSCPHVSGLAALLKS-VHEDWST---AAIKSALMTTAYTLNN 585
S++ P V+G ALL S V E A++K AL+ +A L
Sbjct: 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
+ GK LV AG+ E K VKGKI + QRG +
Sbjct: 14 PAFSGNPTDLLGK---TYELVD---AGLGTPE-----DFEGKDVKGKIALIQRGEITFVE 62
Query: 419 KGEQVKLAGGAGMLLLNSDK-EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASI 477
K K AG G+++ N+ + +A +P + G+A+K + S+K +
Sbjct: 63 KIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALESSK----KL 118
Query: 478 VFKGTVFGNPAPVIASFSSRGP 499
F P +A FSSRGP
Sbjct: 119 TFNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 495 SSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVS 554
SSRGP+ G + ++APG I + T S L ++GTSMS P+
Sbjct: 333 SSRGPTADGALGV--SISAPGGAIASVPNWTLQGSQL-----------MNGTSMSSPNAC 379
Query: 555 GLAAL----LKSVHEDWSTAAIKSALMTTAYTL 583
G AL LK+ ++ +++ AL TA L
Sbjct: 380 GGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
VI S I + +A GV+I+A P V SG S +
Sbjct: 144 VIGVKSDTADDPKSFWYIYVEFSADGVDIIAPAP--------HGRYLTV-----SGNSFA 190
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+G+ ALL S D +K L A
Sbjct: 191 APHVTGMVALLLSEKPDIDANDLKRLLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 42/184 (22%), Positives = 57/184 (30%), Gaps = 53/184 (28%)
Query: 144 VGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVV 203
VG+IDTGI H A +I F
Sbjct: 3 VGMIDTGIDTAHPALS---------------------------AVVIARLFFAGPGAP-- 33
Query: 204 GRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACW 263
+P HGT AS AG L A A +A
Sbjct: 34 ----------APSA---HGTAVASLLAGAGAQRPGLLPGADLYGAD-------VFGRAGG 73
Query: 264 SLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGN 323
G S+ + A+D GV V+++SL G VA A+ G+ + +AGN
Sbjct: 74 GEGASALALARALDWLAEQGVRVVNISLAGPPNALLAAAVAAAA----ARGMVLVAAAGN 129
Query: 324 SGPS 327
GP+
Sbjct: 130 DGPA 133
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 59/194 (30%)
Query: 156 IAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSP 215
IA D G P E F N +++G F ++ + +
Sbjct: 4 IAVIDAGFP--------KVHEAFAFKHLFKNLRILGEYDF----------VDNSNNTNYT 45
Query: 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCS---SSDI 272
D HGT ST AG + G A A + L + +S+
Sbjct: 46 DD--DHGTAVLSTMAGYT--PGVMVG---------------TAPNASYYLARTEDVASET 86
Query: 273 -------LAAIDKAVADGVDVLSLSLG--------GSSRPYYRD-TVAIASFG---ATQS 313
+AA + A + GVD++S SLG S D + S A
Sbjct: 87 PVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASK 146
Query: 314 GVFVSCSAGNSGPS 327
G+ V SAGN G +
Sbjct: 147 GMLVVNSAGNEGST 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 217 DAQGHGTHTASTAAGNIVANANLFGLARG-KAAGMRY-TSRIAAYKACWSLGCSSSDILA 274
D+ HGTH A AA + G+A G + ++ +R+ + + + + ++
Sbjct: 183 DSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSME-------TGTALVR 235
Query: 275 AIDKAVADGVDVLSLSLG-GSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV-- 331
A+ A+ D++++S G + P + + + + GV SAGN+GP++STV
Sbjct: 236 AMIAAIETKCDLINMSYGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGA 295
Query: 332 -DNTAPWIMTVAA 343
T ++ V A
Sbjct: 296 PGGTTSSVIGVGA 308
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 32/168 (19%)
Query: 217 DAQGHGTHTASTAAGNIVANANLFG-----LARGKAAGMRYTSRIAAYKACW-------S 264
D HGT AS AAG NL+G L RG A ++IAA KA W
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPD----AKIAAVKALWFGDVIYAW 109
Query: 265 LGCSSSDILAAIDKAVADG---VDVLSLSLGGSSRPYY------RDTVAIASFGATQSGV 315
L + D + + G VDV+S S G S+ Y + + T +GV
Sbjct: 110 LWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGV 169
Query: 316 FVSCSAGNSGPSISTVDNTAP----WIMTVAASYTDRSFPAIVKLGNG 359
+ +AGN GP T+ TAP ++V A+ T+ + G
Sbjct: 170 PIVSAAGNGGPGYGTI--TAPGAASLAISVGAA-TNFDYRPFYLFGYL 214
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 487 PAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL-----AAWPATTSPSMLKSDDRRVLFN 541
+ +S GP G IKPDV A G N+ A S S F
Sbjct: 194 GPAPAGATTSSGPGSPG--PIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFV 251
Query: 542 IISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALM 577
+ GTS + P + LAA L + + S I+ AL+
Sbjct: 252 TVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418
+ GS+L S + +V G G +G VKGKIV+ +RG S +
Sbjct: 6 TTGYAGSALLFNPPSSPVGVVAGPLVGCGYGTTDDSG----ADVKGKIVLVRRGGCSFSE 61
Query: 419 KGEQVKLAGGAGMLLLNSDKEGEELIA------DAHVLPAATLGASAGKAVKKYVNSTKR 472
K + + AG +++ N+ + + +P + + G+A+ + + K
Sbjct: 62 KVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKT 121
Query: 473 PTASI 477
T +
Sbjct: 122 VTVDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.85 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.75 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.32 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.31 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.8 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.76 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.71 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.71 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.71 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.68 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.66 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.59 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.59 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.55 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.54 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.5 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.48 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.47 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.47 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.42 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.41 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.37 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.19 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.1 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.41 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.85 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.64 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.49 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.33 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.3 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.5 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.43 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.13 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 94.67 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.12 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.74 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.48 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 91.19 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 89.42 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 84.53 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.89 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=457.40 Aligned_cols=304 Identities=59% Similarity=0.955 Sum_probs=261.6
Q ss_pred cccccCCCCcccCCccCCC--ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccc
Q 004242 113 LTLHTTYSPHFLGLESGIG--LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190 (766)
Q Consensus 113 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kii 190 (766)
++++++++++|+|+..... +|.++++|+||+|||||||||++||+|.+++..+++..|++.|+.+..+...+||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688999999999987655 48889999999999999999999999999999999999999999999988889999999
Q ss_pred cccccccccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecC-CCCCH
Q 004242 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS-LGCSS 269 (766)
Q Consensus 191 g~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~ 269 (766)
|.++|..+++.... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999877554322 12233455788999999999999999987776666766777899999999999999988 44889
Q ss_pred HHHHHHHHHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcc
Q 004242 270 SDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349 (766)
Q Consensus 270 ~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~ 349 (766)
+++++||++|++++++|||||||......+.+.+..+...+.++|++||+||||+|+...+.++..||+++||+++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987655566778888888999999999999999988888888999999999831
Q ss_pred eeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCce
Q 004242 350 FPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGA 429 (766)
Q Consensus 350 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~ 429 (766)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKP 509 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 509 (766)
+||
T Consensus 236 -----------------------------------------------------------------------------~~~ 238 (307)
T cd04852 236 -----------------------------------------------------------------------------LKP 238 (307)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 467
Q ss_pred cEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 510 DVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 510 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 239 di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 239 DIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999865311 111222348999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=448.73 Aligned_cols=301 Identities=21% Similarity=0.222 Sum_probs=214.7
Q ss_pred cccCCccC--CCccc--cCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccc
Q 004242 122 HFLGLESG--IGLWD--ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFK 197 (766)
Q Consensus 122 ~~~g~~~~--~~~~~--~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~ 197 (766)
..|+++.+ ..+|. .+.+|+||+|||||||||++||||.++-..... ...|. ..+. .+++..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Gr----dgiD--dD~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGR----KGID--DDNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCc----cccc--cccCCcc---cccc
Confidence 45676643 45665 456899999999999999999999865100000 00000 0000 0111111 1112
Q ss_pred ccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHH
Q 004242 198 GYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAI 276 (766)
Q Consensus 198 g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 276 (766)
||++.+++ ..|.|..||||||||||||...++.+ +.||||+|+|+++|+++..+ +..+++++||
T Consensus 364 G~nfVd~~-------~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI 428 (639)
T PTZ00262 364 GANFVNND-------GGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGDMFKCF 428 (639)
T ss_pred cccccCCC-------CCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHHHHHHH
Confidence 33333222 25788999999999999998644322 37999999999999998776 7889999999
Q ss_pred HHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------cCC----CCCce
Q 004242 277 DKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST--------------VDN----TAPWI 338 (766)
Q Consensus 277 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~~ 338 (766)
+||++.|++|||||||... +...+..++.+|.++|++||+||||+|..... ++. ..|++
T Consensus 429 ~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nV 505 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNV 505 (639)
T ss_pred HHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCE
Confidence 9999999999999999753 33456777889999999999999999864321 221 24677
Q ss_pred EEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhh
Q 004242 339 MTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTG 418 (766)
Q Consensus 339 itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~ 418 (766)
|+|||+..+..
T Consensus 506 IaVGAv~~d~~--------------------------------------------------------------------- 516 (639)
T PTZ00262 506 ITVSNLIKDKN--------------------------------------------------------------------- 516 (639)
T ss_pred EEEeeccCCCC---------------------------------------------------------------------
Confidence 88877532110
Q ss_pred hhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCC
Q 004242 419 KGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRG 498 (766)
Q Consensus 419 ~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~G 498 (766)
.....+.||++|
T Consensus 517 --------------------------------------------------------------------~~~s~s~~Snyg 528 (639)
T PTZ00262 517 --------------------------------------------------------------------NQYSLSPNSFYS 528 (639)
T ss_pred --------------------------------------------------------------------CcccccccccCC
Confidence 000244566666
Q ss_pred CCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHh
Q 004242 499 PSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMT 578 (766)
Q Consensus 499 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~ 578 (766)
.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.+|+++|++
T Consensus 529 ~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~ 588 (639)
T PTZ00262 529 AK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKE 588 (639)
T ss_pred CC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 32 349999999999998765 8999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccCCCCCCCCCCCccccc-CCccCccccCCCCcee
Q 004242 579 TAYTLNNRNSPIADVGGSSDTPLATAFAFG-SGHVDPESASDPGLIY 624 (766)
Q Consensus 579 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~G~id~~~Al~~~lv~ 624 (766)
||.++.. .+..+| .|+||+++|++..+-+
T Consensus 589 TA~~l~~-----------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 589 SIVQLPS-----------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred hCccCCC-----------------CCCccccCcEEcHHHHHHHHHhc
Confidence 9986521 111233 3899999999865543
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=437.14 Aligned_cols=416 Identities=22% Similarity=0.202 Sum_probs=243.0
Q ss_pred CCCCCcEEEEEecccCCCCCCCcC-CCCCCCCCCcccccccCCCcccCCCccccccccccccc-cccccCccccccCCCC
Q 004242 137 NLAKDVIVGVIDTGIWPEHIAFQD-TGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG-YESVVGRINETVDYRS 214 (766)
Q Consensus 137 ~~G~gv~VaVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g-~~~~~~~~~~~~~~~~ 214 (766)
.+|+||+|||||||||+.||+|++ +|.+|+...|++....+..- ....+...+... -+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 479999999999999999999996 57889999999987754321 111111111110 0000 00011122334
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-----------CCHHHHHHHHHHHHhCC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-----------CSSSDILAAIDKAVADG 283 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~g 283 (766)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..++++.||+|+++..
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 67899999999999999965422 237999999999999998764 56889999999998753
Q ss_pred -----CcEEEeccCCCCCC-CcccHHHHHHHHHHhC-CCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEe
Q 004242 284 -----VDVLSLSLGGSSRP-YYRDTVAIASFGATQS-GVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 284 -----~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+.|||||||...++ ...+.++.++..+..+ |++||+||||+|....+...... . ....-...+.+
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~----~----~~~~~~ie~~v 217 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV----P----NGETKTVELNV 217 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec----c----CCceEEEEEEE
Confidence 56999999987553 4556777777777765 99999999999986555433100 0 00001112233
Q ss_pred CCCceEeeeeeccCCC-CceeeeEEccCCCCC----CCccccCCCCCCCcccceEEEEecCCCch--hhhhHHHHhcCce
Q 004242 357 GNGHSFEGSSLYSGKG-SKQLPLVFGKTAGVS----GAEYCINGSLNRKLVKGKIVICQRGLNSR--TGKGEQVKLAGGA 429 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~-~~~~~lv~~~~~~~~----~~~~c~~~~~~~~~~~gkiv~~~~g~~~~--~~~~~~~~~~Ga~ 429 (766)
+.++.-...-+|.... .-.+.++.+...... ....... +.......++.+..+..... .+.....+..-..
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~ 295 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSES--YKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKP 295 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCccee--EEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCc
Confidence 3332211122222222 111222222211000 0000000 00000011111111110000 0000000011112
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEecee---Eec---CCCCccccccCCCCCCCC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGT---VFG---NPAPVIASFSSRGPSLVG 503 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~---~~~---~~~~~~a~fSs~Gp~~~~ 503 (766)
|+|...-..........+.++|.-.+...+. .|+++.+..+++...... .++ .....++.||||||+.+
T Consensus 296 GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~~- 370 (455)
T cd07478 296 GIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRD- 370 (455)
T ss_pred cceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCCC-
Confidence 2222211111111111234555443332221 344444444433321111 122 23456999999999987
Q ss_pred CCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC------CCCCHHHHHHHHH
Q 004242 504 HDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH------EDWSTAAIKSALM 577 (766)
Q Consensus 504 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~~s~~~ik~~L~ 577 (766)
+++||||+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.|++++||++|+
T Consensus 371 -~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~ 436 (455)
T cd07478 371 -GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLI 436 (455)
T ss_pred -CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHH
Confidence 899999999999999999754 89999999999999999999999975 5679999999999
Q ss_pred hccccCCCCCCccccCCCCCCCCCCCcccccCC
Q 004242 578 TTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610 (766)
Q Consensus 578 ~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 610 (766)
+||+++.. ..+++++||||
T Consensus 437 ~tA~~~~~--------------~~~pn~~~GyG 455 (455)
T cd07478 437 RGARRRPG--------------DEYPNPEWGYG 455 (455)
T ss_pred HhCccCCC--------------CCCCCCCCCCC
Confidence 99997631 35678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=413.03 Aligned_cols=286 Identities=29% Similarity=0.340 Sum_probs=191.3
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|||||||||++||+|.++... .|+..++ +...+ ..+++..... ...+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d---------~~~~~------~~g~d~~~~~------~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD---------YKAYL------LPGMDKWGGF------YVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC---------cCCCc------cCCcCCCCCc------cCCCCCc
Confidence 79999999999999999999754210 1110000 00011 1222221111 1246789
Q ss_pred CCCchhHHHhhcccccccccccccc-CCcccccccCceEEEeeeecCCC-CCHHHHHH-------HHHHH--HhCCCcEE
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLA-RGKAAGMRYTSRIAAYKACWSLG-CSSSDILA-------AIDKA--VADGVDVL 287 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVI 287 (766)
+||||||||||||......+.+++. ...+.||||+|+|+.+|+++..+ .....+.. +++|+ .+++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 9999999999999864433322211 22458999999999999997544 33333333 34443 36799999
Q ss_pred EeccCCCCCCC-----cccHHHHHHHH-HHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEeCCC
Q 004242 288 SLSLGGSSRPY-----YRDTVAIASFG-ATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359 (766)
Q Consensus 288 n~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~~~g 359 (766)
|||||...... ..+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++.....+...
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~----- 210 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL----- 210 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-----
Confidence 99999854321 11222322222 24899999999999997643 4556889999999975321100000
Q ss_pred ceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
..+ |
T Consensus 211 ------------------~~~-----------~----------------------------------------------- 214 (311)
T cd07497 211 ------------------FGY-----------L----------------------------------------------- 214 (311)
T ss_pred ------------------hcc-----------c-----------------------------------------------
Confidence 000 0
Q ss_pred cccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEE
Q 004242 440 GEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL 519 (766)
Q Consensus 440 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 519 (766)
....+.++.||||||+.+ +++||||+|||++|+
T Consensus 215 ---------------------------------------------~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG~~i~ 247 (311)
T cd07497 215 ---------------------------------------------PGGSGDVVSWSSRGPSIA--GDPKPDLAAIGAFAW 247 (311)
T ss_pred ---------------------------------------------cCCCCCccccccCCCCcc--cCCCCceeccCcceE
Confidence 012347899999999987 899999999999999
Q ss_pred eecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004242 520 AAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE------DWSTAAIKSALMTTA 580 (766)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~s~~~ik~~L~~TA 580 (766)
++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 248 s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 248 APGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9876542111 111223799999999999999999999999986 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=407.23 Aligned_cols=270 Identities=26% Similarity=0.220 Sum_probs=203.2
Q ss_pred CCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCC
Q 004242 136 TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSP 215 (766)
Q Consensus 136 ~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 215 (766)
+++|+||+|||||||||..||++.+...+.++..+ .+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-------------cCCC
Confidence 57899999999999999999865432111111111 11000 1134
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 67889999999999 399999999999874 35788999999999999999999999865
Q ss_pred CCC-cccHHHHHHHHHHhC-CCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCC
Q 004242 296 RPY-YRDTVAIASFGATQS-GVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG 372 (766)
Q Consensus 296 ~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 372 (766)
.+. ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------ 164 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------ 164 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------
Confidence 543 334577778888887 9999999999998643 4567889999999976433210000
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccE
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPA 452 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 452 (766)
|.. .
T Consensus 165 -------------------~~~-------------------------------------------~-------------- 168 (275)
T cd05562 165 -------------------DPA-------------------------------------------P-------------- 168 (275)
T ss_pred -------------------ccc-------------------------------------------c--------------
Confidence 000 0
Q ss_pred EEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC-cEEeecCCCCCCCCC
Q 004242 453 ATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV-NILAAWPATTSPSML 531 (766)
Q Consensus 453 ~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~ 531 (766)
.......+.|+++||+.+ +.+||||+|||+ ++.+.+..+
T Consensus 169 --------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~------ 208 (275)
T cd05562 169 --------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD------ 208 (275)
T ss_pred --------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC------
Confidence 000013556788999876 789999999975 445544332
Q ss_pred CCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCc
Q 004242 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611 (766)
Q Consensus 532 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 611 (766)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..+..||||+
T Consensus 209 -------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~---------------~~g~d~~~G~G~ 266 (275)
T cd05562 209 -------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG---------------EPGYDNASGSGL 266 (275)
T ss_pred -------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC---------------CCCCCCCcCcCc
Confidence 7899999999999999999999999999999999999999999763 234556899999
Q ss_pred cCccccCC
Q 004242 612 VDPESASD 619 (766)
Q Consensus 612 id~~~Al~ 619 (766)
||+.+|++
T Consensus 267 vda~~Av~ 274 (275)
T cd05562 267 VDADRAVA 274 (275)
T ss_pred ccHHHHhh
Confidence 99999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=402.31 Aligned_cols=242 Identities=27% Similarity=0.356 Sum_probs=197.1
Q ss_pred cccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCC
Q 004242 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDY 212 (766)
Q Consensus 133 ~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~ 212 (766)
|.++++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 899999999999999999999999996420 0011110 0
Q ss_pred CCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEecc
Q 004242 213 RSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSL 291 (766)
Q Consensus 213 ~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 291 (766)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||+++++|||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 1345778999999999999742 137999999999999998776 6677899999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC--cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeecc
Q 004242 292 GGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST--VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYS 369 (766)
Q Consensus 292 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 369 (766)
|... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||+..
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9753 233456666778889999999999999975433 4567789999998531
Q ss_pred CCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCcc
Q 004242 370 GKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHV 449 (766)
Q Consensus 370 ~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~ 449 (766)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC----CCCcccCcEEeCCCcEEeecCCC
Q 004242 450 LPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV----GHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
.+.++.|||+|++.. ..+++||||.|||.+|+++....
T Consensus 163 --------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~ 204 (255)
T cd07479 163 --------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG 204 (255)
T ss_pred --------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC
Confidence 126789999996521 13788999999999999876543
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC----CCCHHHHHHHHHhccccC
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE----DWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~s~~~ik~~L~~TA~~~ 583 (766)
.|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 205 -------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 205 -------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred -------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 788999999999999999999999998 789999999999999975
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=416.22 Aligned_cols=312 Identities=29% Similarity=0.337 Sum_probs=234.0
Q ss_pred CccccCC-CCCCcEEEEEecccCCCCCCCcCCCCCCCCC-----CcccccccCCCcccCCCccccccccccccccccccC
Q 004242 131 GLWDATN-LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPS-----RWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVG 204 (766)
Q Consensus 131 ~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~ 204 (766)
.+|+++. +|+||+|||||||||++||+|.+....+... .++..+.. ....+++.+++.+++|.++.+..
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc--
Confidence 3788887 9999999999999999999998764432211 12222211 12235677888878776542111
Q ss_pred ccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecC--CC-CCHHHHHHHHHHHHh
Q 004242 205 RINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS--LG-CSSSDILAAIDKAVA 281 (766)
Q Consensus 205 ~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~ 281 (766)
....+..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++
T Consensus 76 --------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 76 --------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred --------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 11457889999999999998654221 123489999999999999973 33 778889999999999
Q ss_pred CCCcEEEeccCCCCCC-CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC----------------cCCCCCceEEEecc
Q 004242 282 DGVDVLSLSLGGSSRP-YYRDTVAIASFGATQSGVFVSCSAGNSGPSIST----------------VDNTAPWIMTVAAS 344 (766)
Q Consensus 282 ~g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~~p~~itVga~ 344 (766)
.|++|||||||..... .....+..++.++.++|++||+||||+|..... .+...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 9999999999987553 445667778888999999999999999865432 12244566666664
Q ss_pred cCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHH
Q 004242 345 YTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVK 424 (766)
Q Consensus 345 ~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~ 424 (766)
.....
T Consensus 223 ~~~~~--------------------------------------------------------------------------- 227 (346)
T cd07475 223 NKKVP--------------------------------------------------------------------------- 227 (346)
T ss_pred ccccC---------------------------------------------------------------------------
Confidence 20000
Q ss_pred hcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCC
Q 004242 425 LAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGH 504 (766)
Q Consensus 425 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 504 (766)
......++.||+|||+..
T Consensus 228 ------------------------------------------------------------~~~~~~~~~~S~~G~~~~-- 245 (346)
T cd07475 228 ------------------------------------------------------------NPNGGQMSGFSSWGPTPD-- 245 (346)
T ss_pred ------------------------------------------------------------CCCCCccCCCcCCCCCcc--
Confidence 012347889999999986
Q ss_pred CcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh----CCCCCHHH----HHHHH
Q 004242 505 DVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV----HEDWSTAA----IKSAL 576 (766)
Q Consensus 505 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~----ik~~L 576 (766)
.++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||++|
T Consensus 246 ~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l 312 (346)
T cd07475 246 LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLL 312 (346)
T ss_pred cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 899999999999999987654 7899999999999999999999998 78999877 78889
Q ss_pred HhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCC
Q 004242 577 MTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 577 ~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
++||.+... ....+ ..+.+.++|+|+||+.+|++
T Consensus 313 ~~ta~~~~~------~~~~~---~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 313 MNTATPPLD------SEDTK---TYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HhcCCcccc------cCCCC---ccCCccccCcchhcHHHhhC
Confidence 999985221 11112 56778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=404.65 Aligned_cols=293 Identities=34% Similarity=0.421 Sum_probs=227.6
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|...... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999764211 0122233333211000 00111
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn 288 (766)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|+++..+ .....++++|++|++++++|||
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 22335677899999999999998643 22 37999999999999998666 6777789999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeee
Q 004242 289 LSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365 (766)
Q Consensus 289 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~ 365 (766)
||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 130 ~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 130 ASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred eCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99998654 23366777778888999999999999987543 3355778999998741
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccc
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIA 445 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 445 (766)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCC
Q 004242 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 446 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
+.||+|||+.+ ...||||+|||++++++++..
T Consensus 189 ----------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~~~~~ 220 (312)
T cd07489 189 ----------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILSTYPLA 220 (312)
T ss_pred ----------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEeeeCC
Confidence 45799999987 889999999999999998654
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCc
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH-EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATA 604 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 604 (766)
.. .|..++|||||||+|||++||++|++ |.+++.+||++|++||..+...+..-.. . ...+.
T Consensus 221 ~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~---~~~~~ 283 (312)
T cd07489 221 GG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---P---DLAPV 283 (312)
T ss_pred CC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---c---CCCCH
Confidence 11 58999999999999999999999999 9999999999999999987543211100 0 23566
Q ss_pred ccccCCccCccccCCCC
Q 004242 605 FAFGSGHVDPESASDPG 621 (766)
Q Consensus 605 ~~~G~G~id~~~Al~~~ 621 (766)
.++|+|+||+.+|++..
T Consensus 284 ~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 284 AQQGAGLVNAYKALYAT 300 (312)
T ss_pred hhcCcceeeHHHHhcCC
Confidence 79999999999999854
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=389.03 Aligned_cols=246 Identities=26% Similarity=0.293 Sum_probs=202.6
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
+|..+++|+||+|||||+|||++||+|.+..+.+.. .+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc-------------c
Confidence 799999999999999999999999999764211100 0000 0
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSL 289 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 289 (766)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 013456789999999999987421 247999999999999997654 45788999999999999999999
Q ss_pred ccCCCCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeec
Q 004242 290 SLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLY 368 (766)
Q Consensus 290 SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~ 368 (766)
|||.... ......+..++.+|.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 113 S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 113 SGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 9997543 23456678888889999999999999999887778888999999998631
Q ss_pred cCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCc
Q 004242 369 SGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAH 448 (766)
Q Consensus 369 ~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 448 (766)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCC
Q 004242 449 VLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSP 528 (766)
Q Consensus 449 ~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 528 (766)
.+.++.||+||+.. .||||+|||.+|+++.+.+
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~--- 203 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG--- 203 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---
Confidence 11457799999854 3789999999999998664
Q ss_pred CCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 004242 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED----WSTAAIKSALMTTAYTLNN 585 (766)
Q Consensus 529 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~s~~~ik~~L~~TA~~~~~ 585 (766)
.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 204 ----------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 ----------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ----------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999998753
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=389.97 Aligned_cols=269 Identities=27% Similarity=0.334 Sum_probs=190.4
Q ss_pred CCcEEEEEecccCCCCCCCcCCCCCCC-CCCcccccccCCCcccCCCccccccccccccccccc---cCcc-c------c
Q 004242 140 KDVIVGVIDTGIWPEHIAFQDTGMPPV-PSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESV---VGRI-N------E 208 (766)
Q Consensus 140 ~gv~VaVIDtGid~~Hp~f~~~g~~~~-~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~---~~~~-~------~ 208 (766)
|+|+|||||||||++||+|++...... ....++.-+.+.+|.. . +++++|...+... ..+. + .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 689999999999999999987521100 0011111111222111 0 2233332211000 0000 0 0
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
..+...+.+..+|||||||||+|...+... +.||||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 011234557899999999999998644322 379999999999999876557788999999999999999999
Q ss_pred eccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cC--------CCCCceEEEecccCCcceeEEEEeC
Q 004242 289 LSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST---VD--------NTAPWIMTVAASYTDRSFPAIVKLG 357 (766)
Q Consensus 289 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~~itVga~~~~~~~~~~~~~~ 357 (766)
||||..... ..+.+..++..|.++|+++|+||||+|..... ++ ...+++|+||++....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975332 23456677778899999999999999864321 11 1345677777753211
Q ss_pred CCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCC
Q 004242 358 NGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSD 437 (766)
Q Consensus 358 ~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~ 437 (766)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCc
Q 004242 438 KEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVN 517 (766)
Q Consensus 438 ~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 517 (766)
....++.||++|+.. |||+|||.+
T Consensus 217 -------------------------------------------------~~~~~~~~Sn~G~~~-------vdi~APG~~ 240 (291)
T cd07483 217 -------------------------------------------------ENNLVANFSNYGKKN-------VDVFAPGER 240 (291)
T ss_pred -------------------------------------------------CcccccccCCCCCCc-------eEEEeCCCC
Confidence 011578899999753 499999999
Q ss_pred EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 518 ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 518 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 241 i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 241 IYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99997654 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=389.07 Aligned_cols=289 Identities=41% Similarity=0.526 Sum_probs=215.2
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc-ccCccc-cccCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES-VVGRIN-ETVDYRSPR 216 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~-~~~~~~-~~~~~~~~~ 216 (766)
|+||+|||||+||+++||+|.+.. +.+.++...++|...... ...... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997541 122334444444322100 000000 000112345
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999985442 2237999999999999998544 78889999999999999999999999764
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--CCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV--DNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGS 373 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 373 (766)
.. ..+.+..++..+.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 42 345677788889999999999999998765543 567899999999641100
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEE
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAA 453 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 453 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCC-CCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCC
Q 004242 454 TLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSR-GPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLK 532 (766)
Q Consensus 454 ~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 532 (766)
........|+++ |+... ..+||||+|||.+|+++++..
T Consensus 187 --------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~------- 225 (295)
T cd07474 187 --------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGS------- 225 (295)
T ss_pred --------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCC-------
Confidence 011133445555 45543 889999999999999998653
Q ss_pred CCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCcc
Q 004242 533 SDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHV 612 (766)
Q Consensus 533 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~i 612 (766)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+|
T Consensus 226 ----~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-----------~~~~~~~~G~G~l 290 (295)
T cd07474 226 ----GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-----------VVYPVSRQGAGRV 290 (295)
T ss_pred ----CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-----------CcCChhccCccee
Confidence 1178999999999999999999999999999999999999999998754321 2234568999999
Q ss_pred Ccccc
Q 004242 613 DPESA 617 (766)
Q Consensus 613 d~~~A 617 (766)
|+.+|
T Consensus 291 ~~~~A 295 (295)
T cd07474 291 DALRA 295 (295)
T ss_pred ccccC
Confidence 99987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=378.52 Aligned_cols=234 Identities=29% Similarity=0.384 Sum_probs=191.7
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
|+|||||||||++||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996541 11111110 024567899
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC----CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG----CSSSDILAAIDKAVADGVDVLSLSLGGSSRP 297 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 297 (766)
||||||||+|+..+. .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 5999999999999998642 67788999999999999999999999743
Q ss_pred CcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCcee
Q 004242 298 YYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQL 376 (766)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 376 (766)
...+..++.++.++|+++|+||||+|... ..++...+++|+|++++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34567777789999999999999999764 356777899999998532
Q ss_pred eeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEc
Q 004242 377 PLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLG 456 (766)
Q Consensus 377 ~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~ 456 (766)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCcc
Q 004242 457 ASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDR 536 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 536 (766)
.+.++.||++|+.. ||+|||.+|+++.+..
T Consensus 154 -------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~----------- 183 (239)
T cd05561 154 -------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG----------- 183 (239)
T ss_pred -------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC-----------
Confidence 12567899999976 9999999999987554
Q ss_pred ccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCC
Q 004242 537 RVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610 (766)
Q Consensus 537 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 610 (766)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 --~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g---------------~~~~d~~~G~G 239 (239)
T cd05561 184 --GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG---------------PPGRDPVFGYG 239 (239)
T ss_pred --CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC---------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999763 34455689988
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=377.54 Aligned_cols=247 Identities=34% Similarity=0.422 Sum_probs=195.5
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|||||+||+++||+|.+. |++... . ++...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~--~---------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG--G---------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC--C---------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999764 111000 0 00000001000 0112356788
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh------------CCCcE
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA------------DGVDV 286 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 286 (766)
.+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++++++ .+++|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 999999999999874322 126999999999999998877888899999999975 78999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEe
Q 004242 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363 (766)
Q Consensus 287 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~ 363 (766)
||||||.... ....+..++..+.++|++||+||||++.... .++...|++|+||+.+.
T Consensus 123 in~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------- 183 (264)
T cd07481 123 INNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------- 183 (264)
T ss_pred EEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------
Confidence 9999998654 2344555666788999999999999986544 25677899999998542
Q ss_pred eeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc
Q 004242 364 GSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL 443 (766)
Q Consensus 364 g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 443 (766)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecC
Q 004242 444 IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP 523 (766)
Q Consensus 444 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 523 (766)
.+.++.||++||... +++||||+|||.+|+++.+
T Consensus 184 --------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~s~~~ 217 (264)
T cd07481 184 --------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNIRSAVP 217 (264)
T ss_pred --------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCeEEecC
Confidence 126788999999986 8999999999999999987
Q ss_pred CCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004242 524 ATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED--WSTAAIKSALMTTAY 581 (766)
Q Consensus 524 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~s~~~ik~~L~~TA~ 581 (766)
.. .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 218 ~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 218 GG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 64 7899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=378.36 Aligned_cols=341 Identities=25% Similarity=0.361 Sum_probs=258.9
Q ss_pred cCCCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccc-----cccccCCC-CcEEEEec--c-eeeEEEEEeC
Q 004242 21 IGKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQE-----DQEQETTP-PQILYAYE--N-AISGFSAKLS 91 (766)
Q Consensus 21 ~~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~y~--~-~~~g~s~~l~ 91 (766)
...+.+|||.|++....+. ...|.+|+++..+.......... +..+.+.. ..+.+.|. . +|+|+.-.++
T Consensus 77 ~~~~~~YiV~f~~~~~q~~--~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDASQQK--ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCccHHH--HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 3467999999995444333 56677777765543322111100 00111111 11444443 3 8889999999
Q ss_pred HHHHhhhccCCCeEEEEccccccccc-----CCCCcccCCccCCC-------cc----ccCCCCCCcEEEEEecccCCCC
Q 004242 92 TKQLKSLETVDGFLSATPDELLTLHT-----TYSPHFLGLESGIG-------LW----DATNLAKDVIVGVIDTGIWPEH 155 (766)
Q Consensus 92 ~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~gv~VaVIDtGid~~H 155 (766)
.+-...++..|-++.++++....... .+....|||.++.. -| ..-..|+||...|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988876654 34445677765411 11 1234799999999999999999
Q ss_pred CCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCCchhHHHhhcccccc
Q 004242 156 IAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVA 235 (766)
Q Consensus 156 p~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~ 235 (766)
|+|.++ ..| |.|. . +.....|++||||||||+|++..
T Consensus 235 ~dFegR------a~w-Ga~i-----~-----------------------------~~~~~~D~nGHGTH~AG~I~sKt-- 271 (501)
T KOG1153|consen 235 PDFEGR------AIW-GATI-----P-----------------------------PKDGDEDCNGHGTHVAGLIGSKT-- 271 (501)
T ss_pred cccccc------eec-cccc-----C-----------------------------CCCcccccCCCcceeeeeeeccc--
Confidence 999987 344 1111 0 00134789999999999999884
Q ss_pred ccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCcccHHHH
Q 004242 236 NANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD---------GVDVLSLSLGGSSRPYYRDTVAI 305 (766)
Q Consensus 236 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~ 305 (766)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+... -++..
T Consensus 272 ------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~ 335 (501)
T KOG1153|consen 272 ------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNM 335 (501)
T ss_pred ------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHH
Confidence 6999999999999999988 8999999999999986 35699999999643 46777
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCC-cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCC
Q 004242 306 ASFGATQSGVFVSCSAGNSGPSIST-VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTA 384 (766)
Q Consensus 306 a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~ 384 (766)
|+..|.+.|+.+++||||+..+.+. .|+++..+|||||++..
T Consensus 336 AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------------------------- 378 (501)
T KOG1153|consen 336 AVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------------------------- 378 (501)
T ss_pred HHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------------------------------
Confidence 7789999999999999999988874 45688999999998532
Q ss_pred CCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHH
Q 004242 385 GVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVK 464 (766)
Q Consensus 385 ~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~ 464 (766)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEee
Q 004242 465 KYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIIS 544 (766)
Q Consensus 465 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 544 (766)
+.+|.||+||++. ||.|||.+|+|+|.+... ...++|
T Consensus 379 ------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilS 415 (501)
T KOG1153|consen 379 ------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILS 415 (501)
T ss_pred ------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheee
Confidence 2799999999999 999999999999977522 568899
Q ss_pred cccchhhhhhhHHHHHHhhCCC---------CCHHHHHHHHHhcccc
Q 004242 545 GTSMSCPHVSGLAALLKSVHED---------WSTAAIKSALMTTAYT 582 (766)
Q Consensus 545 GTSmAaP~VAG~aALl~~~~P~---------~s~~~ik~~L~~TA~~ 582 (766)
|||||+|||||++|..++.+|. .+|.++|..+..-..+
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 9999999999999999999882 3788888877765553
|
|
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=375.06 Aligned_cols=243 Identities=29% Similarity=0.332 Sum_probs=194.9
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+||||||||+++||+|.... ..++.++.+.++|.+.. . ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~------~------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNS------N------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCC------C------CCCCCCCC
Confidence 7999999999999999994220 01234566666664321 1 01357889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVADGVDVLSLSLGGSSRP 297 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 297 (766)
|||||||||+|... +.+.||||+|+|+.+|+..... ....+++.|++|+.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 2247999999999999876433 3556788999999999999999999986542
Q ss_pred Cc------------ccHHHHHHHHHHhCCCEEEEecCCCCCC---CCCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 298 YY------------RDTVAIASFGATQSGVFVSCSAGNSGPS---ISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 298 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
.. ...+..++..+.++|+++|+||||+|.. ...++...+++|+|||...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 21 2346677788999999999999999977 3456778899999998531
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
.+.++.||++||+.+ +++||||+|||.+|++..
T Consensus 183 ---------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~~~ 215 (261)
T cd07493 183 ---------------------------------------------NGNKASFSSIGPTAD--GRLKPDVMALGTGIYVIN 215 (261)
T ss_pred ---------------------------------------------CCCCCccCCcCCCCC--CCcCCceEecCCCeEEEc
Confidence 126788999999986 899999999999999865
Q ss_pred CCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 523 PATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 523 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 216 ~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 216 GDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 433 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=375.23 Aligned_cols=263 Identities=31% Similarity=0.352 Sum_probs=202.3
Q ss_pred CccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccccc
Q 004242 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETV 210 (766)
Q Consensus 131 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 210 (766)
.+|..+++|+||+|||||||||++||+|.++... . +...+...+...... ..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~------------~~~~~~~~~~~~~~~---~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------D------------GYDPAVNGYNFVPNV---GD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------C------------CcccccCCccccccc---CC
Confidence 4799999999999999999999999999875110 0 000011111110000 00
Q ss_pred CCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEe
Q 004242 211 DYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSL 289 (766)
Q Consensus 211 ~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~ 289 (766)
......|..||||||||||+|...+.....|++ .+.|+||+|+|+.+|++...+ +...+++++|+||++.|++||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEe
Confidence 112346688999999999999865433222222 236799999999999998765 77888999999999999999999
Q ss_pred ccCCCCCCCcccHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 290 SLGGSSRPYYRDTVAIASFGATQS-------GVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 290 SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
|||......+...+..++..+.++ |+++|+||||++......+...+++|+||+++.+
T Consensus 131 S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~--------------- 195 (273)
T cd07485 131 SWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN--------------- 195 (273)
T ss_pred cCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC---------------
Confidence 999876444556677777788877 9999999999998877778888999999996421
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC-cEEee
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV-NILAA 521 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa 521 (766)
+.++.||++|+.. ||+|||. .|+++
T Consensus 196 ----------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~ 221 (273)
T cd07485 196 ----------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILST 221 (273)
T ss_pred ----------------------------------------------CCcCccccCCCce--------EEEeCCCCccccc
Confidence 2567899999876 9999999 89888
Q ss_pred cCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004242 522 WPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED-WSTAAIKSALMTT 579 (766)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~s~~~ik~~L~~T 579 (766)
.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 222 ~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 222 VPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 764311 11227899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=383.85 Aligned_cols=220 Identities=26% Similarity=0.299 Sum_probs=165.6
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985332 2247999999999999987542 23467999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhCCCEEEEecCCCCCCCCCcC--C-CCCceEEEecccCCcceeEEEEeCCCceEeeeeec
Q 004242 293 GSSRPYYRDTVAIASFG-ATQSGVFVSCSAGNSGPSISTVD--N-TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLY 368 (766)
Q Consensus 293 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~ 368 (766)
..........+..++.+ +.++|+++|+||||+|+..+++. . ..+++|+|||........+...+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------------ 321 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------------ 321 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc------------
Confidence 86542212233334433 44799999999999998766543 2 46899999996321110000000
Q ss_pred cCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCc
Q 004242 369 SGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAH 448 (766)
Q Consensus 369 ~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 448 (766)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCC
Q 004242 449 VLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSP 528 (766)
Q Consensus 449 ~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 528 (766)
.....+.++.||||||+.+ +.+||||+|||++|.+.-...
T Consensus 322 -----------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~--- 361 (412)
T cd04857 322 -----------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWT--- 361 (412)
T ss_pred -----------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCC---
Confidence 0011236899999999997 999999999999998752111
Q ss_pred CCCCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccC
Q 004242 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 529 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~ 583 (766)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 --------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999975 478999999999999999863
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=366.85 Aligned_cols=256 Identities=35% Similarity=0.450 Sum_probs=203.6
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc----------cCCCCCCCC
Confidence 89999999999999999999765211 0 0010000 011245677
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC----CCcEEEeccCC
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD----GVDVLSLSLGG 293 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 293 (766)
.+|||||||||+|...+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999986442 12248999999999999998776 6788999999999998 99999999998
Q ss_pred CCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 294 SSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 294 ~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
... ....+.+..++.++.++|+++|+||||++.... ..+...+++|+|||...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 765 345677888888999999999999999998775 55667899999999653221
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
....++.||++||+.+ +++||||+|||.+|+++.+.....
T Consensus 176 ------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~~~-- 215 (264)
T cd07487 176 ------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGNP-- 215 (264)
T ss_pred ------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccccc--
Confidence 0015788999999987 899999999999999986543110
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 --~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 --GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred --CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1112237899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=361.70 Aligned_cols=232 Identities=36% Similarity=0.503 Sum_probs=193.5
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
.|..+++|+||+|||||+||+++||+|.++. ...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~---------------------------~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA---------------------------IWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe---------------------------eeeeecCCC-------------
Confidence 6778899999999999999999999997541 111122111
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCC-----Cc
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADG-----VD 285 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-----~d 285 (766)
....|..+|||||||||+|.. .||||+|+|+.+|+++..+ ...++++++++|+++.. ++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 114678899999999999873 6999999999999998775 77788999999999874 89
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEee
Q 004242 286 VLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEG 364 (766)
Q Consensus 286 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g 364 (766)
|||||||... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999864 45566677789999999999999999766 3556788999999996421
Q ss_pred eeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc
Q 004242 365 SSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI 444 (766)
Q Consensus 365 ~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 444 (766)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCC
Q 004242 445 ADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPA 524 (766)
Q Consensus 445 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 524 (766)
+.++.||++||.. ||+|||.+|.++...
T Consensus 181 --------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~ 208 (255)
T cd04077 181 --------------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIG 208 (255)
T ss_pred --------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccC
Confidence 2568899999986 999999999998763
Q ss_pred CCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004242 525 TTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYT 582 (766)
Q Consensus 525 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 582 (766)
. ...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 209 ~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 S-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred C-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2 1178999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=364.81 Aligned_cols=207 Identities=31% Similarity=0.419 Sum_probs=168.1
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHH----------hCC
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAV----------ADG 283 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 283 (766)
...+..+|||||||||+|...++. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 456688999999999999865322 2 2799999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 284 VDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 284 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
++|||||||..... ...+..++..+.++|++||+||||++... ..++...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999986432 45677777889999999999999999876 5677788999999986421
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
+.++.||++|+.. ||+|||++|.++.
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 2678899999976 9999999999887
Q ss_pred CCCCCCC--CCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 523 PATTSPS--MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 523 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.....+. ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5432110 00111123378999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=359.64 Aligned_cols=241 Identities=35% Similarity=0.434 Sum_probs=200.7
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++.++ +
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------~--- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------D--- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------C---
Confidence 35789888 999999999999999999998432 22222222211 1
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 287 (766)
..+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++||
T Consensus 62 ----~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 62 ----SDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred ----CCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEE
Confidence 1356788999999999998753322 237999999999999998765 788899999999999999999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 288 SLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 288 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
|||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999864 3456777777888999999999999999888889999999999986421
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTS 527 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 527 (766)
+.++.||++|+.. |++|||.+|+++.+..
T Consensus 187 -----------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-- 215 (260)
T cd07484 187 -----------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG-- 215 (260)
T ss_pred -----------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC--
Confidence 2567899999876 9999999999987653
Q ss_pred CCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004242 528 PSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 528 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 583 (766)
.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 216 -----------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 -----------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 789999999999999999999999999 99999999999999864
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=369.63 Aligned_cols=263 Identities=25% Similarity=0.168 Sum_probs=186.3
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
.+|||||||||.+||+|.+.- .....+... ...+.|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCC
Confidence 379999999999999997541 000111100 0015688999
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-----CCHHHHHHHHHHHHhCC---CcEEEeccCC
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-----CSSSDILAAIDKAVADG---VDVLSLSLGG 293 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~ 293 (766)
||||||||++..... ....|+||+|+|+.+||++..+ ....++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 999999999764331 1236999999999999998763 56778999999999853 4899999998
Q ss_pred CCCCCcc--cHHHHHHH-HHHhCCCEEEEecCCCCCCCCC------------cCCCCCceEEEecccCCcceeEEEEeCC
Q 004242 294 SSRPYYR--DTVAIASF-GATQSGVFVSCSAGNSGPSIST------------VDNTAPWIMTVAASYTDRSFPAIVKLGN 358 (766)
Q Consensus 294 ~~~~~~~--~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~~itVga~~~~~~~~~~~~~~~ 358 (766)
....... ..+..++. .+.++|++||+||||+|..... .+...+++|+|||.+.+......
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 7543211 23444443 3568999999999999987553 24567899999997643320000
Q ss_pred CceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCC
Q 004242 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDK 438 (766)
Q Consensus 359 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 438 (766)
... +
T Consensus 188 ---------------------------------s~~---------~---------------------------------- 191 (291)
T cd04847 188 ---------------------------------ARY---------S---------------------------------- 191 (291)
T ss_pred ---------------------------------ccc---------c----------------------------------
Confidence 000 0
Q ss_pred CcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcE
Q 004242 439 EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNI 518 (766)
Q Consensus 439 ~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 518 (766)
. ......+.||+|||... +.+||||+|||++|
T Consensus 192 ~----------------------------------------------~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~~i 223 (291)
T cd04847 192 A----------------------------------------------VGPAPAGATTSSGPGSP--GPIKPDVVAFGGNL 223 (291)
T ss_pred c----------------------------------------------cccccCCCccccCCCCC--CCcCCcEEeeCCce
Confidence 0 00012344999999987 99999999999999
Q ss_pred EeecCCCCCC-----CCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 519 LAAWPATTSP-----SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 519 ~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.+..+..... ...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 224 AYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 8865421100 00001112337999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=356.25 Aligned_cols=253 Identities=33% Similarity=0.393 Sum_probs=186.7
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||+|||++||+|.+. +...+.|.... ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999754 11111221110 001124567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCcc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYR 300 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 300 (766)
|||||||||+|+..+ +...||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~ 113 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--E 113 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--C
Confidence 999999999998641 22369999999999999987778889999999999999999999999986543 4
Q ss_pred cHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeE
Q 004242 301 DTVAIASFGATQ-SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLV 379 (766)
Q Consensus 301 ~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv 379 (766)
+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s------------------------- 168 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS------------------------- 168 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc-------------------------
Confidence 455555544443 699999999999988777888899999999975332100000
Q ss_pred EccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhh
Q 004242 380 FGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASA 459 (766)
Q Consensus 380 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~ 459 (766)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccc
Q 004242 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539 (766)
Q Consensus 460 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 539 (766)
.........++.+|... ....|||++|||.+|+++.... .....
T Consensus 169 --------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~ 212 (254)
T cd07490 169 --------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQ 212 (254)
T ss_pred --------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCC
Confidence 00001112223333332 2578999999999999965221 01127
Q ss_pred eEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 540 y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 213 ~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=361.69 Aligned_cols=249 Identities=22% Similarity=0.285 Sum_probs=182.9
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
...+|.++++|+||+||||||||+..|| |..++.. + +. .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999888 7543110 0 00 00000
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++++++|||
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn 109 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIIS 109 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEE
Confidence 0113567889999999876 59999999999999864 567789999999999999999
Q ss_pred eccCCCCCC----------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCC
Q 004242 289 LSLGGSSRP----------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGN 358 (766)
Q Consensus 289 ~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~ 358 (766)
||||..... .....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 110 ~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--------- 177 (298)
T cd07494 110 NSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--------- 177 (298)
T ss_pred eecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------
Confidence 999985431 12345777888899999999999999874 56889999999999753321
Q ss_pred CceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCC
Q 004242 359 GHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDK 438 (766)
Q Consensus 359 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~ 438 (766)
+
T Consensus 178 g------------------------------------------------------------------------------- 178 (298)
T cd07494 178 G------------------------------------------------------------------------------- 178 (298)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccC--CCCCCCCCCcccCcE-----
Q 004242 439 EGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSS--RGPSLVGHDVIKPDV----- 511 (766)
Q Consensus 439 ~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs--~Gp~~~~~~~lKPDI----- 511 (766)
.....+++ +.... .+++.|||+
T Consensus 179 --------------------------------------------------~~~~~~~~~~~~s~~-~~g~~~pd~~~~~g 207 (298)
T cd07494 179 --------------------------------------------------ARRASSYASGFRSKI-YPGRQVPDVCGLVG 207 (298)
T ss_pred --------------------------------------------------cccccccccCccccc-CCCCccCccccccC
Confidence 00011111 11111 126677777
Q ss_pred -----------EeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcc
Q 004242 512 -----------TAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580 (766)
Q Consensus 512 -----------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA 580 (766)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|.|++++||.+|++||
T Consensus 208 ~~~~~~~~~~~~APG~~i~~~~~~~~--~~---~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta 282 (298)
T cd07494 208 MLPHAAYLMLPVPPGSQLDRSCAAFP--DG---TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282 (298)
T ss_pred cCCcccccccccCCCcceeccccCCC--CC---CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 479999876553210 00 01123799999999999999999999999999999999999999999
Q ss_pred ccCC
Q 004242 581 YTLN 584 (766)
Q Consensus 581 ~~~~ 584 (766)
+++.
T Consensus 283 ~~~~ 286 (298)
T cd07494 283 RDVT 286 (298)
T ss_pred cccC
Confidence 9763
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=361.80 Aligned_cols=277 Identities=30% Similarity=0.338 Sum_probs=199.2
Q ss_pred cCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCC
Q 004242 135 ATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRS 214 (766)
Q Consensus 135 ~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~ 214 (766)
++++|+||+|||||+|||++||+|.+.... +.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc----cCcccEEEeeccCC----------------C
Confidence 578999999999999999999999764210 000 11222322211111 1
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
..|..+|||||||||+|...+.... ..+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 2378999999999999986543211 1247999999999999998765 56677889999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 293 GSSRPYYRDTVAIASFGAT-Q-SGVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 293 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
......+ .....++.++. + +|+++|+||||+|.... ..+...+++|+|||++......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------------- 187 (293)
T cd04842 125 SPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------------- 187 (293)
T ss_pred CCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------------
Confidence 8754311 22333333333 3 89999999999997765 5677889999999976433100
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
...|..
T Consensus 188 ---------------------~~~~~~----------------------------------------------------- 193 (293)
T cd04842 188 ---------------------GEGGLG----------------------------------------------------- 193 (293)
T ss_pred ---------------------cccccc-----------------------------------------------------
Confidence 000000
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTS 527 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 527 (766)
.......++.||++||+.. +++||||+|||++|+++.+...
T Consensus 194 ------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~~~- 234 (293)
T cd04842 194 ------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSGGG- 234 (293)
T ss_pred ------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCCCC-
Confidence 0012236899999999986 8999999999999999975420
Q ss_pred CCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004242 528 PSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH-----E---DWSTAAIKSALMTTAY 581 (766)
Q Consensus 528 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~~s~~~ik~~L~~TA~ 581 (766)
.........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 235 ---~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 ---GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ---CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0011122378999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=350.21 Aligned_cols=239 Identities=32% Similarity=0.405 Sum_probs=188.8
Q ss_pred cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 142 VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 142 v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
|+|||||+||+++||+|.++. ++.. +++....+ ..+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~------~~~~~~~~-------~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVP------GWNFVSNN-------DPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccC------CccccCCC-------CCCCCCCCC
Confidence 789999999999999997630 0111 11111110 134678999
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC-Cc
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRP-YY 299 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~-~~ 299 (766)
||||||||+|+..+.. .+.|+||+|+|+.+|+++..+ +...++.++++|+++.+++|||||||..... ..
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999999999854322 237999999999999998765 6788899999999999999999999986542 34
Q ss_pred ccHHHHHHHHHHh-CCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeee
Q 004242 300 RDTVAIASFGATQ-SGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPL 378 (766)
Q Consensus 300 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~l 378 (766)
...+..++..+.+ +|+++|+||||+|......+...+++|+||+.+..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 5667777777888 99999999999998877778889999999996421
Q ss_pred EEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHh
Q 004242 379 VFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGAS 458 (766)
Q Consensus 379 v~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~ 458 (766)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCcccc
Q 004242 459 AGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538 (766)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 538 (766)
+.++.||++||.. |++|||.++.......... .+....
T Consensus 164 ------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~ 201 (242)
T cd07498 164 ------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGG 201 (242)
T ss_pred ------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCC
Confidence 2578899999986 9999999998885432110 111223
Q ss_pred ceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 539 ~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 202 ~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 202 GYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=357.41 Aligned_cols=264 Identities=30% Similarity=0.347 Sum_probs=185.4
Q ss_pred ccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCC
Q 004242 134 DATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYR 213 (766)
Q Consensus 134 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 213 (766)
..+++|+||+|||||+|||.+||+|.++.. ...+|..+ .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 357899999999999999999999976411 11122111 1
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccC
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLG 292 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 292 (766)
.+.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467899999999999998543 2236999999999999997654 77778999999999999999999999
Q ss_pred CCCC----------CCcccHHHHHHHHH---------------HhCCCEEEEecCCCCCCCCCcC-----CCCCceEEEe
Q 004242 293 GSSR----------PYYRDTVAIASFGA---------------TQSGVFVSCSAGNSGPSISTVD-----NTAPWIMTVA 342 (766)
Q Consensus 293 ~~~~----------~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~~itVg 342 (766)
.... ......+......+ .++|++||+||||++....... ...+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 8541 11112222222233 6899999999999986543221 1123444444
Q ss_pred cccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHH
Q 004242 343 ASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQ 422 (766)
Q Consensus 343 a~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~ 422 (766)
+....
T Consensus 192 ~V~~~--------------------------------------------------------------------------- 196 (297)
T cd07480 192 AVGAL--------------------------------------------------------------------------- 196 (297)
T ss_pred EECCC---------------------------------------------------------------------------
Confidence 42110
Q ss_pred HHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC
Q 004242 423 VKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV 502 (766)
Q Consensus 423 ~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~ 502 (766)
.....|+++.+.
T Consensus 197 ------------------------------------------------------------------~~~~~~~~~~~~-- 208 (297)
T cd07480 197 ------------------------------------------------------------------GRTGNFSAVANF-- 208 (297)
T ss_pred ------------------------------------------------------------------CCCCCccccCCC--
Confidence 012223333222
Q ss_pred CCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004242 503 GHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYT 582 (766)
Q Consensus 503 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 582 (766)
...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|++++.+++.+|+.....
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~ 273 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTA 273 (297)
T ss_pred --CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhh
Confidence 345789999999999988654 89999999999999999999999999999998888888843322
Q ss_pred CCCCCCccccCCCCCCCCCCCcccccCCccCcc
Q 004242 583 LNNRNSPIADVGGSSDTPLATAFAFGSGHVDPE 615 (766)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~ 615 (766)
.... ... ......++|+|++++.
T Consensus 274 ~~~~-------~~~---~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 274 ARTT-------QFA---PGLDLPDRGVGLGLAP 296 (297)
T ss_pred cccC-------CCC---CCCChhhcCCceeecC
Confidence 1000 000 3456668999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=346.78 Aligned_cols=249 Identities=33% Similarity=0.463 Sum_probs=191.8
Q ss_pred CCcEEEEEecccCCCCCCCcCCCCCCCCCCcccc---cccCCCcccCCCccccccccccccccccccCccccccCCCCCC
Q 004242 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGG---CEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPR 216 (766)
Q Consensus 140 ~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 216 (766)
+||+|||||||||++||+|.++ .|... +..+... +....+. -..+|++.. ....+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~-------~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDD----DGNGYVD---DIYGWNFVN-------NDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCccc----CCCCccc---CCCcccccC-------CCCCCC
Confidence 6899999999999999999875 23211 1111110 0000000 001222211 223567
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..+|||||||||+|...+... +.|+||+|+|+.+|+++..+ ++..+++++|+++++.+++|||+|||...
T Consensus 61 d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 8899999999999998644322 37999999999999998776 88889999999999999999999999864
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC---CCcCC--CCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI---STVDN--TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
. ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 133 ~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------------- 186 (259)
T cd07473 133 P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------------- 186 (259)
T ss_pred C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------------
Confidence 3 45677777889999999999999998762 23333 45889999986421
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
+.++.||++||.. ||+.|||.++++..+..
T Consensus 187 --------------------------------------~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~----- 216 (259)
T cd07473 187 --------------------------------------DALASFSNYGKKT-------VDLAAPGVDILSTSPGG----- 216 (259)
T ss_pred --------------------------------------CCcCcccCCCCCC-------cEEEeccCCeEeccCCC-----
Confidence 2566799999864 59999999999976544
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 217 --------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 --------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred --------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=351.34 Aligned_cols=244 Identities=21% Similarity=0.233 Sum_probs=178.3
Q ss_pred CCccccCC-CCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 130 IGLWDATN-LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 130 ~~~~~~~~-~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
..+|+... .|+||+|+|||+|||.+||+|.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 46787744 589999999999999999999765110 0000
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh----CCC
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA----DGV 284 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~ 284 (766)
..+.|+.+|||||||||+|..+ .+| +.||||+|+|+.+|+++ .++++++|++|++ .++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v 106 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDV 106 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCE
Confidence 0145788999999999999731 112 27999999999999985 3456677777776 346
Q ss_pred cEEEeccCCCCCC------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc------------C-CCCCceEEEeccc
Q 004242 285 DVLSLSLGGSSRP------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV------------D-NTAPWIMTVAASY 345 (766)
Q Consensus 285 dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~~itVga~~ 345 (766)
.+||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++
T Consensus 107 ~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~ 186 (277)
T cd04843 107 ILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGS 186 (277)
T ss_pred EEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEecc
Confidence 6899999986432 2234556677788899999999999998653211 1 1235788888864
Q ss_pred CCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHh
Q 004242 346 TDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKL 425 (766)
Q Consensus 346 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~ 425 (766)
.+.
T Consensus 187 ~~~----------------------------------------------------------------------------- 189 (277)
T cd04843 187 STT----------------------------------------------------------------------------- 189 (277)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred cCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCC
Q 004242 426 AGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHD 505 (766)
Q Consensus 426 ~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 505 (766)
...++.||++|+..
T Consensus 190 --------------------------------------------------------------~~~~~~fSn~G~~v---- 203 (277)
T cd04843 190 --------------------------------------------------------------GHTRLAFSNYGSRV---- 203 (277)
T ss_pred --------------------------------------------------------------CCccccccCCCCcc----
Confidence 01378999999976
Q ss_pred cccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHh----h-CCCCCHHHHHHHHHhcc
Q 004242 506 VIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----V-HEDWSTAAIKSALMTTA 580 (766)
Q Consensus 506 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~s~~~ik~~L~~TA 580 (766)
||.|||++|+++.+..... ..+.....|..++|||||||||||++|||++ + +|+|+|+|||++|+.|+
T Consensus 204 ----di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~ 276 (277)
T cd04843 204 ----DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATG 276 (277)
T ss_pred ----ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999998654211 0011111457899999999999999999975 3 49999999999999997
Q ss_pred c
Q 004242 581 Y 581 (766)
Q Consensus 581 ~ 581 (766)
+
T Consensus 277 ~ 277 (277)
T cd04843 277 T 277 (277)
T ss_pred C
Confidence 4
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=337.52 Aligned_cols=226 Identities=35% Similarity=0.504 Sum_probs=186.5
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||+||+++||+|.++ ++....|..... ..+.|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~~------------~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDDN------------NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCCC------------CCCCCCCC
Confidence 799999999999999999754 111122221100 14567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 299 (766)
|||||||||++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||....
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--- 109 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--- 109 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---
Confidence 9999999999975332 237999999999999998776 677899999999999999999999998642
Q ss_pred ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc--CCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceee
Q 004242 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTV--DNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLP 377 (766)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 377 (766)
...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 34456666788899999999999999876654 7888999999996422
Q ss_pred eEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcH
Q 004242 378 LVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGA 457 (766)
Q Consensus 378 lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~ 457 (766)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccc
Q 004242 458 SAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRR 537 (766)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 537 (766)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~------------ 188 (229)
T cd07477 160 -------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN------------ 188 (229)
T ss_pred -------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC------------
Confidence 1567899999975 9999999999998654
Q ss_pred cceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 538 VLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 538 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=352.12 Aligned_cols=253 Identities=30% Similarity=0.310 Sum_probs=178.4
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
.|+|||||||||++||+|.++-.. ..+.+.....+.........+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999863110 000110000000000000111234567899
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCC-CHHHHHHHHHHHHhCCCcEEEeccCCCCCCC-
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSRPY- 298 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~- 298 (766)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998732 149999999999999987764 8889999999999999999999999754321
Q ss_pred -------cccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------------CcCCCCCceEEEecccCCcc
Q 004242 299 -------YRDTVAIASFGATQSGVFVSCSAGNSGPSIS----------------------TVDNTAPWIMTVAASYTDRS 349 (766)
Q Consensus 299 -------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----------------------~~~~~~p~~itVga~~~~~~ 349 (766)
..+.+..++..+.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~--- 199 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN--- 199 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC---
Confidence 1234666677788999999999999986541 22334556666666431
Q ss_pred eeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCce
Q 004242 350 FPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGA 429 (766)
Q Consensus 350 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~ 429 (766)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccC
Q 004242 430 GMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKP 509 (766)
Q Consensus 430 g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 509 (766)
.+.++.||++|+...
T Consensus 200 ----------------------------------------------------------~~~~~~~S~~g~~~~------- 214 (294)
T cd07482 200 ----------------------------------------------------------NGNLSSFSNYGNSRI------- 214 (294)
T ss_pred ----------------------------------------------------------CCCcCccccCCCCcc-------
Confidence 236778999987654
Q ss_pred cEEeCCCcEEeecCCCCC---CCC------CCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCH-HHHHHHHHhc
Q 004242 510 DVTAPGVNILAAWPATTS---PSM------LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWST-AAIKSALMTT 579 (766)
Q Consensus 510 DI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~-~~ik~~L~~T 579 (766)
|++|||+++....+.... ... .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 215 ~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 215 DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred eEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999998533211100 000 001123347899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=342.46 Aligned_cols=156 Identities=23% Similarity=0.233 Sum_probs=119.3
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
+++|+|||||||||++||+|.++ ++..+.|...... + + .......|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~--~--~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G--N--KVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c--c--cCCCCCCCC
Confidence 78999999999999999999764 1122222211000 0 0 001123568
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-------CCHHHHHHHHHHHHhCCCcEEEecc
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-------CSSSDILAAIDKAVADGVDVLSLSL 291 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 291 (766)
.||||||||||+ |+||+|+|+.+|+++..+ ++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 789999999999997643 4567899999999999999999999
Q ss_pred CCCCCC---CcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-C--cCCCCCceEEEeccc
Q 004242 292 GGSSRP---YYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-T--VDNTAPWIMTVAASY 345 (766)
Q Consensus 292 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~~itVga~~ 345 (766)
|..... .....+..++.+|.++|++||+||||+|.... . .+...|++|+|||++
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 986532 23567888888999999999999999997754 3 345678999999975
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=353.32 Aligned_cols=274 Identities=36% Similarity=0.487 Sum_probs=207.3
Q ss_pred EEEEEecccCCCCCCCc-CCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCC
Q 004242 143 IVGVIDTGIWPEHIAFQ-DTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221 (766)
Q Consensus 143 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gH 221 (766)
+|||||||||++||+|. ++- ...++.+.+.|.++ . .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~------~----~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDG------N----PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTT------B----STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCC------C----CCcCccccCCCc
Confidence 69999999999999997 320 01122222333222 1 012245678899
Q ss_pred chhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHH-hCCCcEEEeccCCCC--C-C
Q 004242 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAV-ADGVDVLSLSLGGSS--R-P 297 (766)
Q Consensus 222 GThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~--~-~ 297 (766)
||||||||+|.. . .+.. ...|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... . +
T Consensus 49 GT~va~ii~~~~-~-~~~~-----~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~ 121 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNGP-----GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP 121 (282)
T ss_dssp HHHHHHHHHHTT-S-SSSS-----SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS
T ss_pred cchhhhhccccc-c-cccc-----ccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc
Confidence 999999999996 2 2211 23799999999999998777777888999999999 899999999998832 2 2
Q ss_pred CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC---cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCc
Q 004242 298 YYRDTVAIASFGATQSGVFVSCSAGNSGPSIST---VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSK 374 (766)
Q Consensus 298 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 374 (766)
...+.+..+...+.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 122 ~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------- 174 (282)
T PF00082_consen 122 SYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------- 174 (282)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------
T ss_pred ccccccccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------
Confidence 333445666668889999999999999877653 55667889999985311
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEE
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAAT 454 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 454 (766)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCC
Q 004242 455 LGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSD 534 (766)
Q Consensus 455 v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (766)
..++.||++|+... .+++||||+|||.+|+++++....
T Consensus 175 ----------------------------------~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------- 212 (282)
T PF00082_consen 175 ----------------------------------GQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------- 212 (282)
T ss_dssp ----------------------------------SSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES-------
T ss_pred ----------------------------------cccccccccccccc-cccccccccccccccccccccccc-------
Confidence 15688999976542 389999999999999988865410
Q ss_pred ccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCc
Q 004242 535 DRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDP 614 (766)
Q Consensus 535 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 614 (766)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||||+||+
T Consensus 213 ---~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~------------~~~~~~~~G~G~in~ 277 (282)
T PF00082_consen 213 ---GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN------------GEGYDNSYGWGLINA 277 (282)
T ss_dssp ---EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT------------SSSSHHHHTTSBE-H
T ss_pred ---ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC------------CCCCCCCccCChhCH
Confidence 26889999999999999999999999999999999999999999875211 134566889999999
Q ss_pred cccCC
Q 004242 615 ESASD 619 (766)
Q Consensus 615 ~~Al~ 619 (766)
.+|++
T Consensus 278 ~~a~~ 282 (282)
T PF00082_consen 278 EKALN 282 (282)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=348.72 Aligned_cols=248 Identities=21% Similarity=0.196 Sum_probs=180.9
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+++|+||+|+|||||||++||+|.++... ...+.|..+ ..+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~------~~~- 75 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDN------DPD- 75 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCC------CCC-
Confidence 467899999999999999999999999999765211 011112111 000
Q ss_pred ccCCCCC--CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcE
Q 004242 209 TVDYRSP--RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDV 286 (766)
Q Consensus 209 ~~~~~~~--~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 286 (766)
..+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+ .++|
T Consensus 76 ----~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 76 ----PTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred ----CCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceE
Confidence 012 2788999999999999853321 12799999999999998765 344455566666554 4599
Q ss_pred EEeccCCCCCCC----cccHHHHHHHHHHh-----CCCEEEEecCCCCCCCCC----cCCCCCceEEEecccCCcceeEE
Q 004242 287 LSLSLGGSSRPY----YRDTVAIASFGATQ-----SGVFVSCSAGNSGPSIST----VDNTAPWIMTVAASYTDRSFPAI 353 (766)
Q Consensus 287 In~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~~itVga~~~~~~~~~~ 353 (766)
||||||...... .......++.++.+ +|+++|+||||+|..... .....|++|+|||++.+
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------ 215 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------ 215 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------
Confidence 999999764421 12233344444443 699999999999973221 22456889999986421
Q ss_pred EEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEE
Q 004242 354 VKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLL 433 (766)
Q Consensus 354 ~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 433 (766)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEe
Q 004242 434 LNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTA 513 (766)
Q Consensus 434 ~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 513 (766)
+.++.||++|+.. +++|
T Consensus 216 -------------------------------------------------------g~~~~~s~~g~~~--------~~~a 232 (297)
T cd04059 216 -------------------------------------------------------GVRASYSEVGSSV--------LASA 232 (297)
T ss_pred -------------------------------------------------------CCCcCCCCCCCcE--------EEEe
Confidence 2667899999987 8999
Q ss_pred CCCc-------EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 514 PGVN-------ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 514 PG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 233 ~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 233 PSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred cCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 9987 66665431 0126788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=327.46 Aligned_cols=221 Identities=25% Similarity=0.288 Sum_probs=173.4
Q ss_pred CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCC
Q 004242 141 DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220 (766)
Q Consensus 141 gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~g 220 (766)
||+|||||||||++||+|.++-.. .+.+..+ ... .+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~~~-------~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-EII-------VVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-ccc-------cCCCCCCCCCC
Confidence 799999999999999999764110 0111000 000 01124567889
Q ss_pred CchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 004242 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299 (766)
Q Consensus 221 HGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 299 (766)
|||||||||++ .+|+++|+.+|+++..+ +...++++||+|+++++++|||||||..... .
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~ 106 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-D 106 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-c
Confidence 99999999974 46999999999998776 7888999999999999999999999986542 2
Q ss_pred ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeE
Q 004242 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLV 379 (766)
Q Consensus 300 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv 379 (766)
...+..++.++.++|+++|+||||++.... .+...+.+|+|++...++
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------- 154 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------- 154 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------
Confidence 345667777888999999999999986543 367788999999853211
Q ss_pred EccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhh
Q 004242 380 FGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASA 459 (766)
Q Consensus 380 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~ 459 (766)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccc
Q 004242 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL 539 (766)
Q Consensus 460 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 539 (766)
.. +.+++ ++|+.|||.+|+++.+.. .
T Consensus 155 ------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~-------------~ 180 (222)
T cd07492 155 ------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG-------------R 180 (222)
T ss_pred ------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC-------------C
Confidence 11 11223 349999999999998654 7
Q ss_pred eEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 540 y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 181 ~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 181 YLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=330.32 Aligned_cols=242 Identities=31% Similarity=0.356 Sum_probs=186.2
Q ss_pred CCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCC
Q 004242 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRD 217 (766)
Q Consensus 138 ~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d 217 (766)
+|+||+|||||+||+++||+|.+...... .+...... ......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~~---------~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVNDA---------GYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccccc---------cCCCCCC
Confidence 59999999999999999999986521100 00000000 0113456
Q ss_pred CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 218 AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998543 2247999999999999998764 66777889999999999999999999876
Q ss_pred CC------------CcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCc---------CCCCCceEEEecccCCcceeEEE
Q 004242 296 RP------------YYRDTVAIASFGATQSGVFVSCSAGNSGPSISTV---------DNTAPWIMTVAASYTDRSFPAIV 354 (766)
Q Consensus 296 ~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~~itVga~~~~~~~~~~~ 354 (766)
.. .....+......+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------ 189 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------ 189 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------
Confidence 42 1445666777788899999999999998654332 23557899999865322
Q ss_pred EeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEe
Q 004242 355 KLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 355 ~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCcccc--ccCCCCCCCCCCcccCcEE
Q 004242 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIAS--FSSRGPSLVGHDVIKPDVT 512 (766)
Q Consensus 435 ~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lKPDI~ 512 (766)
.... ||++|+... .++++
T Consensus 190 -------------------------------------------------------~~~~~~~s~~~~~~~-----~~~~~ 209 (267)
T cd04848 190 -------------------------------------------------------TIASYSYSNRCGVAA-----NWCLA 209 (267)
T ss_pred -------------------------------------------------------Ccccccccccchhhh-----hheee
Confidence 2233 488876542 34799
Q ss_pred eCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 513 APGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
|||.+|+++.+.. ...|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 210 apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 210 APGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999987631 117889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=317.36 Aligned_cols=359 Identities=25% Similarity=0.332 Sum_probs=256.1
Q ss_pred CceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeC-----HHHHhhh
Q 004242 24 QTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLS-----TKQLKSL 98 (766)
Q Consensus 24 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~-----~~~~~~L 98 (766)
+.+|||.|+..... ..++..+++.|....-. .+.. -.....-..|-.-|.-+-++-. .-++++|
T Consensus 49 e~EyIv~F~~y~~A-----k~r~syi~skl~gS~Vt---nWri---ipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierL 117 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA-----KDRRSYIESKLRGSGVT---NWRI---IPRINPATKYPSDFGVLWIEESGKEAVVGEIERL 117 (1033)
T ss_pred cceeEEEecccccc-----hHHHHHHHHHhhcCCCC---ceeE---eeccCccccCCCccceEEEeccCccchhheeeeh
Confidence 57899999976542 34566666655432200 0000 0011112234334443333322 2347899
Q ss_pred ccCCCeEEEEccccccccc------------CC------------------CCcccCCc------------cCCCccccC
Q 004242 99 ETVDGFLSATPDELLTLHT------------TY------------------SPHFLGLE------------SGIGLWDAT 136 (766)
Q Consensus 99 ~~~p~V~~v~~~~~~~~~~------------~~------------------s~~~~g~~------------~~~~~~~~~ 136 (766)
..+|.|+.|.|.+.+..-. +. .+..|+-. ...-+|.+|
T Consensus 118 e~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~G 197 (1033)
T KOG4266|consen 118 EMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKG 197 (1033)
T ss_pred hcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhcc
Confidence 9999999999887654310 00 00011100 114589999
Q ss_pred CCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCC
Q 004242 137 NLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPR 216 (766)
Q Consensus 137 ~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~ 216 (766)
++|++|+|||.|||+.-+||-|+.--- -.+|. | . ..-.
T Consensus 198 yTGa~VkvAiFDTGl~~~HPHFrnvKE---RTNWT--------------N-----------------E--------~tLd 235 (1033)
T KOG4266|consen 198 YTGAKVKVAIFDTGLRADHPHFRNVKE---RTNWT--------------N-----------------E--------DTLD 235 (1033)
T ss_pred ccCCceEEEEeecccccCCccccchhh---hcCCc--------------C-----------------c--------cccc
Confidence 999999999999999999999974200 01121 0 0 1345
Q ss_pred CCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 004242 217 DAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSS 295 (766)
Q Consensus 217 d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 295 (766)
|..||||.|||+|||.. ...|.||+++|+++|||-+.. .+.+..++|+.||+....||+|+|+|++.
T Consensus 236 D~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD 303 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD 303 (1033)
T ss_pred cCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc
Confidence 68899999999999873 236999999999999998766 88899999999999999999999999874
Q ss_pred CCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCC--CceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCC
Q 004242 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTA--PWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGS 373 (766)
Q Consensus 296 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 373 (766)
+.+.++-.-+.....++|++|.|+||+||-..+..+++ ..+|.||.-
T Consensus 304 --fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI----------------------------- 352 (1033)
T KOG4266|consen 304 --FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI----------------------------- 352 (1033)
T ss_pred --cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-----------------------------
Confidence 44556655566788899999999999999888776644 344444432
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEE
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAA 453 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 453 (766)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCC----CCCcccCcEEeCCCcEEeecCCCCCCC
Q 004242 454 TLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLV----GHDVIKPDVTAPGVNILAAWPATTSPS 529 (766)
Q Consensus 454 ~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~ 529 (766)
...+.+|.|||||-+.. ..+++||||++-|.+|.......
T Consensus 353 --------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~---- 396 (1033)
T KOG4266|consen 353 --------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST---- 396 (1033)
T ss_pred --------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc----
Confidence 12248999999996542 23899999999999998765433
Q ss_pred CCCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcc
Q 004242 530 MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAF 605 (766)
Q Consensus 530 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (766)
+...+||||.|+|.|||+++||.+ +.--++|+.+|++|+..|.++. ...-+
T Consensus 397 ---------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLp----------------g~NMf 451 (1033)
T KOG4266|consen 397 ---------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLP----------------GPNMF 451 (1033)
T ss_pred ---------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCC----------------CCchh
Confidence 678899999999999999999966 3345699999999999999873 33457
Q ss_pred cccCCccCccccCC
Q 004242 606 AFGSGHVDPESASD 619 (766)
Q Consensus 606 ~~G~G~id~~~Al~ 619 (766)
.||+|++|..++++
T Consensus 452 EQGaGkldLL~syq 465 (1033)
T KOG4266|consen 452 EQGAGKLDLLESYQ 465 (1033)
T ss_pred hccCcchhHHHHHH
Confidence 89999999988776
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=304.90 Aligned_cols=238 Identities=27% Similarity=0.386 Sum_probs=179.0
Q ss_pred CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCC-C--CCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 004242 218 AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSL-G--CSSSDILAAIDKAVADGVDVLSLSLGGS 294 (766)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 294 (766)
...|||||||||+|+...... ..|+||+|+|+++++.+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 356999999999999755322 3699999999999997643 2 5667789999999999999999999987
Q ss_pred CC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCC---CCCceEEEecccCCcceeEEEEeCCCceEeeeeeccC
Q 004242 295 SR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDN---TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSG 370 (766)
Q Consensus 295 ~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 370 (766)
.. +.....+...-..+.++|+++|+||||+||...+++. ....+|.|||--.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 65 4444445544444559999999999999998776653 44578888872111000
Q ss_pred CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccc
Q 004242 371 KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVL 450 (766)
Q Consensus 371 ~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 450 (766)
...|.
T Consensus 441 --~a~y~------------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 441 --QAEYS------------------------------------------------------------------------- 445 (1304)
T ss_pred --Hhhhh-------------------------------------------------------------------------
Confidence 00000
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 530 (766)
+++ .-...+..+|||||+.| |.+--.|+|||+.|.+- |...
T Consensus 446 ------------~~e--------------------~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~t---- 486 (1304)
T KOG1114|consen 446 ------------VRE--------------------PVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQYT---- 486 (1304)
T ss_pred ------------hhc--------------------cCCCCccccccCCCCcC--CCcceEEecCCccccCC-chhh----
Confidence 000 11225788999999998 88889999999988664 2110
Q ss_pred CCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccc
Q 004242 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606 (766)
Q Consensus 531 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (766)
...-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++.. -.+|.
T Consensus 487 ------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~----------------id~fa 544 (1304)
T KOG1114|consen 487 ------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD----------------IDSFA 544 (1304)
T ss_pred ------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc----------------cchhc
Confidence 11457899999999999999999965 46789999999999999998742 36789
Q ss_pred ccCCccCccccCC
Q 004242 607 FGSGHVDPESASD 619 (766)
Q Consensus 607 ~G~G~id~~~Al~ 619 (766)
+|.|++++.+|.+
T Consensus 545 qG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 545 QGQGMLQVDKAYE 557 (1304)
T ss_pred cCcceeehhHHHH
Confidence 9999999999976
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=282.07 Aligned_cols=192 Identities=20% Similarity=0.156 Sum_probs=141.9
Q ss_pred CCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHH--HhCCCcEEEeccC
Q 004242 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKA--VADGVDVLSLSLG 292 (766)
Q Consensus 215 ~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 292 (766)
..|..+|||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4778999998766522 1233466778888 6679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhC-CCEEEEecCCCCCCC-----CCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 293 GSSRPY------YRDTVAIASFGATQS-GVFVSCSAGNSGPSI-----STVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 293 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 865432 223456666666655 999999999999753 233557788999999642210
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCC--CCCCCCCCcccCcEEeCCCcE
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSR--GPSLVGHDVIKPDVTAPGVNI 518 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~lKPDI~APG~~I 518 (766)
....+.||++ +|+.+ +..||||+|||++|
T Consensus 164 -----------------------------------------------~~~~s~~sn~~~~~~~~--~~~~~di~APG~~i 194 (247)
T cd07488 164 -----------------------------------------------RFFASDVSNAGSEINSY--GRRKVLIVAPGSNY 194 (247)
T ss_pred -----------------------------------------------cceecccccccCCCCCC--CCceeEEEEeeeeE
Confidence 0023456665 44443 78999999999999
Q ss_pred EeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCC------HHHHHHHHHhc
Q 004242 519 LAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWS------TAAIKSALMTT 579 (766)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------~~~ik~~L~~T 579 (766)
++ +.. .|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 195 ~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 222 688999999999999999999999987765 44566666655
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-31 Score=271.29 Aligned_cols=196 Identities=37% Similarity=0.485 Sum_probs=157.7
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH-hCCCcEEEecc
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV-ADGVDVLSLSL 291 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~Sl 291 (766)
...+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 345688999999999999853321 16999999999999987765 67888999999999 89999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 292 GGSSRPYYRDTVAIASFGATQS-GVFVSCSAGNSGPSIS---TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 292 G~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
|..... ....+...+..+.++ |+++|+|+||++.... ..+...+++|+||+++.+.
T Consensus 110 g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------- 169 (241)
T cd00306 110 GGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------- 169 (241)
T ss_pred CCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------
Confidence 987543 334566666677777 9999999999998776 4777899999999975322
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccc-cccCCCCCCCCCCcccCcEEeCCCcEEeecCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIA-SFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT 526 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 526 (766)
... .++++| .|||+.|||.++......
T Consensus 170 ------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-- 197 (241)
T cd00306 170 ------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-- 197 (241)
T ss_pred ------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC--
Confidence 111 334444 456999999999875111
Q ss_pred CCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhc
Q 004242 527 SPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTT 579 (766)
Q Consensus 527 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 579 (766)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 ---------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 ---------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ---------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11278999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=240.55 Aligned_cols=250 Identities=34% Similarity=0.440 Sum_probs=186.7
Q ss_pred CCcccc--CCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccc
Q 004242 130 IGLWDA--TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRIN 207 (766)
Q Consensus 130 ~~~~~~--~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~ 207 (766)
...|.. +++|+|++|+|||+||+..||+|.+.... .++|... ...
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~------~~~ 176 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDG------DPE 176 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccC------CCC
Confidence 567777 89999999999999999999999765210 0112211 100
Q ss_pred cccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCC-C-CCHHHHHHHHHHHHhCC--
Q 004242 208 ETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSL-G-CSSSDILAAIDKAVADG-- 283 (766)
Q Consensus 208 ~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g-- 283 (766)
....|..+|||||+|++++....+ .....|++|+++++.+|++... + ...++++++++++++.+
T Consensus 177 -----~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 244 (508)
T COG1404 177 -----PPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGP 244 (508)
T ss_pred -----CCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCC
Confidence 024688999999999999842111 1123799999999999999865 5 67778899999999999
Q ss_pred CcEEEeccCCCCCCCcccHHHHHHHHHHhCC-CEEEEecCCCCCCCC----CcCCCC--CceEEEecccCCcceeEEEEe
Q 004242 284 VDVLSLSLGGSSRPYYRDTVAIASFGATQSG-VFVSCSAGNSGPSIS----TVDNTA--PWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 284 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~~itVga~~~~~~~~~~~~~ 356 (766)
+++||||+|..........+..++..++..| +++|+|+||.+.... ..+... +.+++|++...
T Consensus 245 ~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------- 314 (508)
T COG1404 245 ADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------- 314 (508)
T ss_pred CcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------
Confidence 9999999998611233345555666777777 999999999987652 222222 36677766431
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
.+.++.||++|+.. ..+++|||.
T Consensus 315 ---------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~ 337 (508)
T COG1404 315 ---------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGV 337 (508)
T ss_pred ---------------------------------------------------CCccccccccCCCC------CcceeCCCc
Confidence 12678899999851 129999999
Q ss_pred cEEe-----ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 004242 517 NILA-----AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE-DWSTAAIKSALMTTAYT 582 (766)
Q Consensus 517 ~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~ 582 (766)
+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 338 ~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 338 NILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 9988 444321 1499999999999999999999999999 89999999998888873
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-22 Score=200.30 Aligned_cols=154 Identities=18% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|.+|++||+|++||+|.||||-|||+..+ |+. -. .|++..+++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yna-------ea------sydfssndp--- 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YNA-------EA------SYDFSSNDP--- 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cCc-------ee------ecccccCCC---
Confidence 57899999999999999999999999999643 111 01 222222221
Q ss_pred cCCCCCCC--CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcE
Q 004242 210 VDYRSPRD--AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDV 286 (766)
Q Consensus 210 ~~~~~~~d--~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 286 (766)
.++....| .+.|||.|||-+++...++ .+| .|||++.++..+|+++. .+..|+++|-..--+ ...+|
T Consensus 197 fpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEE
Confidence 12222223 5789999999988876543 444 39999999999999865 466677665322222 35689
Q ss_pred EEeccCCCCCC-Cc---ccHHHHHHHHHH-----hCCCEEEEecCCCCCC
Q 004242 287 LSLSLGGSSRP-YY---RDTVAIASFGAT-----QSGVFVSCSAGNSGPS 327 (766)
Q Consensus 287 In~SlG~~~~~-~~---~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~ 327 (766)
.+-|||..... .. .++..+++.+-+ ..|-++|.|.|..|..
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 99999986542 21 122233332333 2466899999987754
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=181.74 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=81.0
Q ss_pred ccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CcccHHHHHHHHHHhCCCEEEEe
Q 004242 247 AAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAD---GVDVLSLSLGGSSRP---YYRDTVAIASFGATQSGVFVSCS 320 (766)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 320 (766)
+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999997543 45677888888887 999999999987543 23456777788899999999999
Q ss_pred cCCCCCCCC-----------CcCCCCCceEEEecccCCc
Q 004242 321 AGNSGPSIS-----------TVDNTAPWIMTVAASYTDR 348 (766)
Q Consensus 321 AGN~g~~~~-----------~~~~~~p~~itVga~~~~~ 348 (766)
+||+|.... .++...||+++||+++...
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999997653 3567899999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=113.72 Aligned_cols=122 Identities=51% Similarity=0.842 Sum_probs=100.6
Q ss_pred EEeCCCceEeeeeeccCCCCceeeeEEccC-CCCCCCccccCCCCCCCcccceEEEEecCCC-chhhhhHHHHhcCceEE
Q 004242 354 VKLGNGHSFEGSSLYSGKGSKQLPLVFGKT-AGVSGAEYCINGSLNRKLVKGKIVICQRGLN-SRTGKGEQVKLAGGAGM 431 (766)
Q Consensus 354 ~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~-~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~-~~~~~~~~~~~~Ga~g~ 431 (766)
+.++||+++.|++++++.. ..+++++... ........|.+..+...+++||||+|+++.+ .+.+|..+++++||.|+
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gv 80 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGM 80 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEE
Confidence 6789999999999997665 5678877443 2344557899888888999999999999999 89999999999999999
Q ss_pred EEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEE
Q 004242 432 LLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTAS 476 (766)
Q Consensus 432 i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~ 476 (766)
|++++.............+|.+.|...+|+.|++|++++.+++++
T Consensus 81 I~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 81 ILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999887654333333567999999999999999999998776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=116.98 Aligned_cols=117 Identities=28% Similarity=0.309 Sum_probs=93.0
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccccc-Ccccc
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIAD-AHVLP 451 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p 451 (766)
....++||.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++++.......... ...+|
T Consensus 25 ~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIP 96 (143)
T ss_pred CcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEe
Confidence 46788888654 3334455678999999999999999999999999999999999887543222221 35789
Q ss_pred EEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCC
Q 004242 452 AATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSL 501 (766)
Q Consensus 452 ~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~ 501 (766)
+++|+..+|+.|++|+++ ++++.+..+....+++.++.||||||..
T Consensus 97 ~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 97 VVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred EEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 999999999999999988 5667666665556778899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-09 Score=88.71 Aligned_cols=82 Identities=32% Similarity=0.560 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccCCCeE
Q 004242 26 TYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFL 105 (766)
Q Consensus 26 ~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~ 105 (766)
+|||.|++...... ....+.+++.+++.+..... .....++.+.|+..||||+++++++++++|+++|+|+
T Consensus 1 ~YIV~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~ 71 (82)
T PF05922_consen 1 RYIVVFKDDASAAS-SFSSHKSWQASILKSALKSA--------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVK 71 (82)
T ss_dssp EEEEEE-TTSTHHC-HHHHHHHHHH----HHHHTH---------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEE
T ss_pred CEEEEECCCCCcch-hHHHHHHHHHHHHhhhhhhh--------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeE
Confidence 69999999865332 13456666665544322100 1467899999999999999999999999999999999
Q ss_pred EEEcccccccc
Q 004242 106 SATPDELLTLH 116 (766)
Q Consensus 106 ~v~~~~~~~~~ 116 (766)
+|+|++.++++
T Consensus 72 ~Ve~D~~v~l~ 82 (82)
T PF05922_consen 72 SVEPDQVVSLH 82 (82)
T ss_dssp EEEEECEEEE-
T ss_pred EEEeCceEecC
Confidence 99999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-08 Score=88.98 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=77.0
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc---cccc--cCcc
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE---ELIA--DAHV 449 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~--~~~~ 449 (766)
.-++++... ...+.|.+..+...+++|||+||+|+.|.+.+|..+++++||.++|++|+..... .... ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 446666432 2357899888877899999999999999999999999999999999998776321 1111 3456
Q ss_pred ccEEEEcHhhHHHHHHHHhcCCCCe
Q 004242 450 LPAATLGASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~~~~~~ 474 (766)
+|+++|+..+|+.|++++..+.+.+
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999998776533
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-08 Score=88.38 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc----ccCccccEEEEcHhhHH
Q 004242 386 VSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI----ADAHVLPAATLGASAGK 461 (766)
Q Consensus 386 ~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~v~~~~g~ 461 (766)
....+.|.+.... .+++|||+||+|+.|.+.+|..+++++||.|+|++++......+. .....+|+++|+..+|+
T Consensus 24 ~~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 24 ASNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred CCcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 3456789887764 469999999999999999999999999999999998876522221 12357999999999999
Q ss_pred HHHHHHhcCCCCeE
Q 004242 462 AVKKYVNSTKRPTA 475 (766)
Q Consensus 462 ~l~~~~~~~~~~~~ 475 (766)
.|++|++.+...++
T Consensus 103 ~l~~~l~~g~~v~v 116 (118)
T cd04818 103 ALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999997765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-08 Score=87.24 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=71.9
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc-cccc-------ccCccccEEEEcHhhH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG-EELI-------ADAHVLPAATLGASAG 460 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~~-------~~~~~~p~~~v~~~~g 460 (766)
.+.|.+.. ...+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 57798644 3568999999999999999999999999999999999876541 1111 1235799999999999
Q ss_pred HHHHHHHhcCCCCeEEE
Q 004242 461 KAVKKYVNSTKRPTASI 477 (766)
Q Consensus 461 ~~l~~~~~~~~~~~~~i 477 (766)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.1e-08 Score=90.32 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=73.5
Q ss_pred CCccccCCCC--CCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc-ccc---ccCccccEEEEcHhhHH
Q 004242 388 GAEYCINGSL--NRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE-ELI---ADAHVLPAATLGASAGK 461 (766)
Q Consensus 388 ~~~~c~~~~~--~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~-~~~---~~~~~~p~~~v~~~~g~ 461 (766)
..+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .+. .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578988776 56789999999999999999999999999999999999886321 221 12347899999999999
Q ss_pred HHHHHHhcCCCCeEE
Q 004242 462 AVKKYVNSTKRPTAS 476 (766)
Q Consensus 462 ~l~~~~~~~~~~~~~ 476 (766)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988765554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=86.20 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc----cccccCcc
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE----ELIADAHV 449 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~~~ 449 (766)
..+|++.+. ....|....+.+.+++|+|+|++||.|.|.+|..+++++||.++|++|+..... ........
T Consensus 20 ~~~~~~~~~-----~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLT-----SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCC-----CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 445666533 347899888888899999999999999999999999999999999999876311 11124467
Q ss_pred ccEEEEcHhhHHHHHHHHhc
Q 004242 450 LPAATLGASAGKAVKKYVNS 469 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~~ 469 (766)
||+++|+..+|+.|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999988863
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.9e-08 Score=86.72 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=64.8
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC----cccccccCccccEEEEcHhhHHHHH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE----GEELIADAHVLPAATLGASAGKAVK 464 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~----~~~~~~~~~~~p~~~v~~~~g~~l~ 464 (766)
...|.+......+++||||||+||.|.+.+|..+++++||.|+|+++.... ..........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 456777778889999999999999999999999999999999999992111 2333445678999999999999999
Q ss_pred HHH
Q 004242 465 KYV 467 (766)
Q Consensus 465 ~~~ 467 (766)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.1e-07 Score=83.10 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=74.7
Q ss_pred eeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc-ccccCccccEEE
Q 004242 376 LPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE-LIADAHVLPAAT 454 (766)
Q Consensus 376 ~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~~~~~~p~~~ 454 (766)
+|++..........+.|.+...+..+++|+|+|++|+.|.|.+|..+++++||.++|++|+...... ...+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 6666555444556789988766666899999999999999999999999999999999988754221 122333456665
Q ss_pred EcHhhHHHHHHHHhcCCCCe
Q 004242 455 LGASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 455 v~~~~g~~l~~~~~~~~~~~ 474 (766)
+ ..+|++|++.+..+...+
T Consensus 108 ~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEE
Confidence 6 999999999998775443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=85.85 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=68.3
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc-----ccc--c-----ccCccccEEEEc
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG-----EEL--I-----ADAHVLPAATLG 456 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~-----~~~--~-----~~~~~~p~~~v~ 456 (766)
.+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... ..+ . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986654 567999999999999999999999999999999999876542 111 0 124579999999
Q ss_pred HhhHHHHHHHHhcCCCCe
Q 004242 457 ASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~ 474 (766)
..+|+.|++.+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=85.04 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCccccCCC--CCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc--c----ccCccccEEEEcHhh
Q 004242 388 GAEYCINGS--LNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL--I----ADAHVLPAATLGASA 459 (766)
Q Consensus 388 ~~~~c~~~~--~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~v~~~~ 459 (766)
....|.... +...+++|||+||+|+.|.+.+|..+++++||.|+|++++....... . .....+|++.|+..+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688877 67788999999999999999999999999999999999887632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCCe
Q 004242 460 GKAVKKYVNSTKRPT 474 (766)
Q Consensus 460 g~~l~~~~~~~~~~~ 474 (766)
|+.|++|+.++.+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998865543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-07 Score=84.18 Aligned_cols=95 Identities=21% Similarity=0.226 Sum_probs=73.7
Q ss_pred eeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc----ccccCccc
Q 004242 375 QLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE----LIADAHVL 450 (766)
Q Consensus 375 ~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~----~~~~~~~~ 450 (766)
.-++++.. ...|.+..+ +.+++|||+|++|+.|.+.+|..+++++||.++|++|+...+.. ...+...+
T Consensus 23 ~g~lv~~~------~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~I 95 (122)
T cd02130 23 TGPLVVVP------NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYV 95 (122)
T ss_pred EEEEEEeC------CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEe
Confidence 34566643 346876554 35799999999999999999999999999999999988743211 11234579
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeEE
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTAS 476 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~~ 476 (766)
|+++|+..+|+.|++.+.++++.+++
T Consensus 96 p~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 96 PTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred eEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999999988765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.5e-07 Score=100.01 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=96.8
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+...|..+++|+++.|+|.|+|+...||+.... .-..+..++.. ... .
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~------~~~-~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNR------HDN-D 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeec------CCC-C
Confidence 467999999999999999999999999998643 01111122211 111 1
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 287 (766)
..+..+......|||-|++-.+...++. .. ..|+++++++..++++... .++...+...... .-.++-
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C------~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di~ 138 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNL--TC------GVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDIY 138 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCC--cC------CCCcccCccccceeeeeee---cccceecccccCCCCCceee
Confidence 1111223346889999999999885222 11 2599999999999987432 1122222222222 346799
Q ss_pred EeccCCCCCC----CcccHHHHHHHH-----HHhCCCEEEEecCCCCCCCC
Q 004242 288 SLSLGGSSRP----YYRDTVAIASFG-----ATQSGVFVSCSAGNSGPSIS 329 (766)
Q Consensus 288 n~SlG~~~~~----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 329 (766)
+.|||..... .-......+... ...+|-+.++|.||.|....
T Consensus 139 scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 139 SCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999986542 111112222222 33678899999999875543
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=104.79 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=57.8
Q ss_pred ccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCC-cEEEeccCCCCC-----CCcccHHHHHHHHHHhCCCEEEEe
Q 004242 247 AAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGV-DVLSLSLGGSSR-----PYYRDTVAIASFGATQSGVFVSCS 320 (766)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~-----~~~~~~~~~a~~~a~~~Gi~vV~A 320 (766)
.+-+||+|+|..|-+ .. .....+..|+.+....=+ -+|-.||+.... +..-+.+..-...|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 367999999998866 21 122222233332222111 234456665322 113344555556788999999999
Q ss_pred cCCCCCCCC--------CcCCCCCceEEEec
Q 004242 321 AGNSGPSIS--------TVDNTAPWIMTVAA 343 (766)
Q Consensus 321 AGN~g~~~~--------~~~~~~p~~itVga 343 (766)
+|.+|.... ..+..+|++++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986654 24568999999998
|
|
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-07 Score=84.07 Aligned_cols=84 Identities=21% Similarity=0.389 Sum_probs=67.9
Q ss_pred CccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc------ccCccccEEEEcHhhHHH
Q 004242 389 AEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI------ADAHVLPAATLGASAGKA 462 (766)
Q Consensus 389 ~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~v~~~~g~~ 462 (766)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+...-.... .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 47798754 479999999999999999999999999999999998765311111 113579999999999999
Q ss_pred HHHHHhcCCCCeE
Q 004242 463 VKKYVNSTKRPTA 475 (766)
Q Consensus 463 l~~~~~~~~~~~~ 475 (766)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-07 Score=82.51 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=68.9
Q ss_pred CCccccCCCCC--CC----cccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc-----------cccCccc
Q 004242 388 GAEYCINGSLN--RK----LVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL-----------IADAHVL 450 (766)
Q Consensus 388 ~~~~c~~~~~~--~~----~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----------~~~~~~~ 450 (766)
..+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+....... ..+...+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 35678876543 22 3788999999999999999999999999999999986542110 1123469
Q ss_pred cEEEEcHhhHHHHHHHHhcCCCCeE
Q 004242 451 PAATLGASAGKAVKKYVNSTKRPTA 475 (766)
Q Consensus 451 p~~~v~~~~g~~l~~~~~~~~~~~~ 475 (766)
|+++|+..+|+.|++.+..+...++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999998876544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.3e-07 Score=80.36 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc------ccccCccccEEEEcHhhH
Q 004242 387 SGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE------LIADAHVLPAATLGASAG 460 (766)
Q Consensus 387 ~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~~~p~~~v~~~~g 460 (766)
...+.|.+. +..+++|||+|++||.|.|.+|..+++++||+++|++|+...... .......+|+++++..+|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789765 568899999999999999999999999999999999987764211 112335799999999999
Q ss_pred HHHHHHHhcC
Q 004242 461 KAVKKYVNST 470 (766)
Q Consensus 461 ~~l~~~~~~~ 470 (766)
+.|+.++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999987643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=81.56 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=60.7
Q ss_pred CCCCcccceEEEEecCCCc-----hhhhhHHHHhcCceEEEEecCCCC-cc--ccccc---CccccEEEEcHhhHHHHHH
Q 004242 397 LNRKLVKGKIVICQRGLNS-----RTGKGEQVKLAGGAGMLLLNSDKE-GE--ELIAD---AHVLPAATLGASAGKAVKK 465 (766)
Q Consensus 397 ~~~~~~~gkiv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~~~~~~-~~--~~~~~---~~~~p~~~v~~~~g~~l~~ 465 (766)
+...+++|||+|++||.|. |.+|.++++++||.++|++|+... +. ....+ ...+|+++++..+|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 4456899999999999999 999999999999999999999732 21 11121 4589999999999999999
Q ss_pred HHhcC
Q 004242 466 YVNST 470 (766)
Q Consensus 466 ~~~~~ 470 (766)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 98543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=82.94 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=69.4
Q ss_pred CccccCCCCCC---CcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc-ccc-----cCccccEEEEcHhh
Q 004242 389 AEYCINGSLNR---KLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE-LIA-----DAHVLPAATLGASA 459 (766)
Q Consensus 389 ~~~c~~~~~~~---~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~-----~~~~~p~~~v~~~~ 459 (766)
.+.|.+....+ .++.|+|+|++||.|.|.+|..+++++||.++|++|+...... ... ....+|+++++..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56898776544 7899999999999999999999999999999999998654211 111 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004242 460 GKAVKKYVNSTKR 472 (766)
Q Consensus 460 g~~l~~~~~~~~~ 472 (766)
|+.|+.++...+.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=72.80 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=55.9
Q ss_pred eEEEEEEEEecCCCCeEEEEEEeC--------CCce-----------EEEEeCCeEEEeecceEEEEEEEEEEecC---C
Q 004242 683 SLEYERSVTNVGTSYCTYAVKVEE--------PNGV-----------LVTITPPILSFQKIGEILSYKVTFVSLRG---A 740 (766)
Q Consensus 683 ~~~~~rtvtn~g~~~~ty~~~v~~--------p~g~-----------~v~v~p~~~~~~~~~~~~~~~vt~~~~~~---~ 740 (766)
..+++++|+|.|+...+|+++... ..|. .+...|..+++++ |++++|+|+|+++.. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCCcc
Confidence 689999999999999999998641 1111 5667788899988 999999999999652 2
Q ss_pred CCC-eEEEEEEEC-Cce-eEEeEEE
Q 004242 741 SNE-SFGSLTWVS-GKY-AVKSPIA 762 (766)
Q Consensus 741 ~~~-~~G~~~~~~-~~~-~v~~p~~ 762 (766)
+.. ++|+|.+++ ..+ .+++||+
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 244 999999998 454 8999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-05 Score=70.83 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCC--chhhhhHHHHhcCceEEEEecCCCCcccc-----c-
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLN--SRTGKGEQVKLAGGAGMLLLNSDKEGEEL-----I- 444 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----~- 444 (766)
....++||.+... ...+...+++|||++++++.+ .+.+|..+++++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 4567888876542 112335579999999999998 88999999999999999999866542211 0
Q ss_pred -ccCccccEEEEcHhhHHHHHHHHhcCC
Q 004242 445 -ADAHVLPAATLGASAGKAVKKYVNSTK 471 (766)
Q Consensus 445 -~~~~~~p~~~v~~~~g~~l~~~~~~~~ 471 (766)
.....+|++.|+.+||+.|++.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999998743
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00053 Score=64.19 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCcccceEEEEecCCC------chhhh-------hHHHHhcCceEEEEecCCCC-------ccccc-ccCccccEEEEc
Q 004242 398 NRKLVKGKIVICQRGLN------SRTGK-------GEQVKLAGGAGMLLLNSDKE-------GEELI-ADAHVLPAATLG 456 (766)
Q Consensus 398 ~~~~~~gkiv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~v~ 456 (766)
...+++|||++++++.| .+..| ...++++||.++|+++.... |.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 88888 68999999999999985422 22111 223569999999
Q ss_pred HhhHHHHHHHHhcCCCCe
Q 004242 457 ASAGKAVKKYVNSTKRPT 474 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~ 474 (766)
.++++.|...++.+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999998875443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0031 Score=61.54 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC-------------
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE------------- 439 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------------- 439 (766)
...-++||.+.+...+.+.. .....+++|||+|++++.|.+.+|..+|+++||+|+|++++..+
T Consensus 28 ~v~g~lVyvn~G~~~Df~~L---~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~ 104 (183)
T cd02128 28 TVTGKLVYANYGRKKDFEDL---QSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGH 104 (183)
T ss_pred ceEEEEEEcCCCCHHHHHHH---HhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecc
Confidence 44667888654311111100 11245799999999999999999999999999999999987421
Q ss_pred -----cccc-----------c--c---cCccccEEEEcHhhHHHHHHHHhcC
Q 004242 440 -----GEEL-----------I--A---DAHVLPAATLGASAGKAVKKYVNST 470 (766)
Q Consensus 440 -----~~~~-----------~--~---~~~~~p~~~v~~~~g~~l~~~~~~~ 470 (766)
|+.+ . . .-..||++-|+..++..|++.+.-.
T Consensus 105 ~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 105 VHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred eeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0000 0 0 1245889999999999999998654
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0059 Score=66.50 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC------cccccccCccccEEEEcHhhHHHHHHHHhcCCC
Q 004242 399 RKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE------GEELIADAHVLPAATLGASAGKAVKKYVNSTKR 472 (766)
Q Consensus 399 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~ 472 (766)
...+++|++++.||.|.|.+|...++++||.++++.|+..+ ++........||+.+++.++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 56799999999999999999999999999999999998543 444455667899999999999999987666665
Q ss_pred CeEEE
Q 004242 473 PTASI 477 (766)
Q Consensus 473 ~~~~i 477 (766)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54443
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0062 Score=57.11 Aligned_cols=65 Identities=29% Similarity=0.217 Sum_probs=52.3
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCC------------------chhhhhHHHHhcCceEEEEe
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLN------------------SRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 434 (766)
....|+|+.+.+.. ...|....+...|++||||++.++.| .+..|..+++++||.|+|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888876532 24677777878899999999999877 46679999999999999999
Q ss_pred cCCCC
Q 004242 435 NSDKE 439 (766)
Q Consensus 435 ~~~~~ 439 (766)
++...
T Consensus 97 ~~~~~ 101 (142)
T cd04814 97 HELAP 101 (142)
T ss_pred eCCCc
Confidence 98664
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=54.47 Aligned_cols=65 Identities=31% Similarity=0.310 Sum_probs=52.1
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCc------------hhhhhHHHHhcCceEEEEecCCCC
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS------------RTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
...-++||.+.+.. ...|....+...+++|||||+.++.|. +..|..++.++||.|+|++++...
T Consensus 21 ~v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 21 SVEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred CceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 45678888776532 356777777788999999999998763 668999999999999999998654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.029 Score=53.29 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=50.8
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCC------------------CchhhhhHHHHhcCceEEEEe
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGL------------------NSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
...-++||.+.+. ....|....+...+++|||||+.++. |.+..|..++.+.||.|+|++
T Consensus 19 ~vtg~lVfvGyGi--~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 19 AVTAPVVFAGYGI--TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred CceEeEEEecCCc--CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 3456888877542 23557666677789999999998773 566789999999999999999
Q ss_pred cCCCC
Q 004242 435 NSDKE 439 (766)
Q Consensus 435 ~~~~~ 439 (766)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98755
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.27 Score=43.36 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=61.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEECCceeEEeEE
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVSGKYAVKSPI 761 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~v~~p~ 761 (766)
...+.+++|+|.|.....|++.......-.++++|..=.+.+ |++.++.|+|.... +.+.+.+.|...-.+..+.+|+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~-~~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTK-PLGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCC-CCceEEEEEEEEECCeEEEEEE
Confidence 477788999999999999998765433456777877666666 99999999999643 2334788888877667788887
Q ss_pred EEE
Q 004242 762 AVT 764 (766)
Q Consensus 762 ~v~ 764 (766)
-+.
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.018 Score=54.04 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=49.8
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
|+.+.+..-++||..-+...+.+.-.. ..+++|||+|++.|...+-.|..+|++.||.|+|++.+..+
T Consensus 9 YS~sG~Vtg~~VYvNyG~~eDf~~L~~----~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 9 YSAKGTLQAEVVDVQYGSVEDLRRIRD----NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred eCCCCceEEEEEEecCCCHHHHHHHHh----CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 444445567788866543222221111 26799999999999999999999999999999999988654
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.043 Score=55.52 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=47.2
Q ss_pred CCceeeeEEccCCCCCCCccccCCCC-----CCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 372 GSKQLPLVFGKTAGVSGAEYCINGSL-----NRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 372 ~~~~~~lv~~~~~~~~~~~~c~~~~~-----~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
.....++||.+.. ....+ ...+++|||||+.++.+.+.+|..+|+++||+|+|++++..+
T Consensus 43 g~v~g~lVyvnyG--------~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 43 GNVTAELVYANYG--------SPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCceEEEEEcCCC--------cHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 3456788887643 22222 246899999999999998889999999999999999987654
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.041 Score=51.04 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc----------cccCccccEEEEc
Q 004242 387 SGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL----------IADAHVLPAATLG 456 (766)
Q Consensus 387 ~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----------~~~~~~~p~~~v~ 456 (766)
+...+|.+.. +.....+.+.+++||+|+|..|..+++++||..+|+.++.....++ ..+...+|++.+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 4567787643 3456788999999999999999999999999999998877664333 1245789999999
Q ss_pred HhhHHHHHHHHhcCCCCeEEEEe
Q 004242 457 ASAGKAVKKYVNSTKRPTASIVF 479 (766)
Q Consensus 457 ~~~g~~l~~~~~~~~~~~~~i~~ 479 (766)
..+|..++.-++.-..+-+.|..
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ccceEEEehhHHHhCCccEEEec
Confidence 99998887777665555444433
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.27 Score=41.11 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred eeEEEEEEEEecCCCC-eEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSY-CTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
.+.+++.+|+|.|... ...++++..|.|-.+...|..+.--+.|++++++++|++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5889999999999755 44788889999999888888775445599999999999865
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.97 Score=41.12 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=41.5
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCC
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGA 740 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 740 (766)
-.-.++..|+|....+.+|++++..++|+.+......+++.+ |++.++.|.+.++...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 455678999999999999999999988999966558888877 9999999999997644
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.3 Score=52.39 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=63.4
Q ss_pred ccccCCCCC---CCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc----ccCccccEEEEcHhhHHH
Q 004242 390 EYCINGSLN---RKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI----ADAHVLPAATLGASAGKA 462 (766)
Q Consensus 390 ~~c~~~~~~---~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~v~~~~g~~ 462 (766)
++|.+...- .......++++.||+|.|.+|..+|+.+|.+++|++|+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 567654431 3456667999999999999999999999999999999877754333 244678999999999999
Q ss_pred HHHHHhcC
Q 004242 463 VKKYVNST 470 (766)
Q Consensus 463 l~~~~~~~ 470 (766)
|++|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99985443
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=91.19 E-value=3.6 Score=37.69 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=53.9
Q ss_pred ceeeeccCCccceeEEEEEEEEecCCCCeEEEEEEe----CCCce--------------EEE-----EeCCeEEEeecce
Q 004242 670 SFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVE----EPNGV--------------LVT-----ITPPILSFQKIGE 726 (766)
Q Consensus 670 s~~~~~~~~~~~~~~~~~rtvtn~g~~~~ty~~~v~----~p~g~--------------~v~-----v~p~~~~~~~~~~ 726 (766)
.|-+....+ .+.+++++|+|.++.+.+|.+.+. ...|+ ... -.|..+++++ ++
T Consensus 18 YFdL~~~P~---q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~-~~ 93 (121)
T PF06030_consen 18 YFDLKVKPG---QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPP-NE 93 (121)
T ss_pred eEEEEeCCC---CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECC-CC
Confidence 454444443 589999999999999999999862 22221 000 1245578877 99
Q ss_pred EEEEEEEEEEecCCCCC-eEEEEEEE
Q 004242 727 ILSYKVTFVSLRGASNE-SFGSLTWV 751 (766)
Q Consensus 727 ~~~~~vt~~~~~~~~~~-~~G~~~~~ 751 (766)
+++++++++.+...-.. +-|.|.+.
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 99999999997654444 77777775
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.91 Score=43.51 Aligned_cols=63 Identities=29% Similarity=0.199 Sum_probs=42.6
Q ss_pred ceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCch-------------------hhhhHHHHhcCceEEEEe
Q 004242 374 KQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSR-------------------TGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 374 ~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~ 434 (766)
...|+||.+-+...... .-..+...|++||||++..+.-.+ ..|...+.+.||.|+|++
T Consensus 22 ~~~elVFvGyGi~ape~--~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEY--GWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCccc--CcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 45677887765322111 112445678999999998764322 248999999999999999
Q ss_pred cCCC
Q 004242 435 NSDK 438 (766)
Q Consensus 435 ~~~~ 438 (766)
....
T Consensus 100 ~~~~ 103 (157)
T cd04821 100 HETE 103 (157)
T ss_pred eCCC
Confidence 7654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.53 E-value=7.1 Score=43.33 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=56.3
Q ss_pred eeEEEEEEEEecCCCCeE-EEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCC-CCeEEEEEEEC
Q 004242 682 MSLEYERSVTNVGTSYCT-YAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGAS-NESFGSLTWVS 752 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~t-y~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~-~~~~G~~~~~~ 752 (766)
...+....+.|.|+.+.| -++++..|.|-++.|.|.++---++|+++++.+|++++.... +.++=.|+-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 478889999999987765 577889999999999999776556699999999999975433 33666666544
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.89 E-value=0.95 Score=53.67 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=32.5
Q ss_pred CCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEEC-----CceeEEeEEEEE
Q 004242 716 PPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVS-----GKYAVKSPIAVT 764 (766)
Q Consensus 716 p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~-----~~~~v~~p~~v~ 764 (766)
|+.|.+. ++.+.+.|+|+++....+-.++.|.=-| .+...|+|+-|.
T Consensus 636 p~~l~l~--~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 636 PEYLMLA--NQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred chhheec--cCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 5555543 6788888888887644444666666544 578899998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 766 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-124 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-118 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 8e-11 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-08 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 4e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 7e-08 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 9e-08 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 1e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 1e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 1e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 2e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 2e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 2e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 2e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 3e-07 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 3e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 3e-07 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 4e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 4e-07 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 4e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 4e-07 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 4e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 4e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 5e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 6e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-07 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 2e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 2e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 9e-06 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 9e-06 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 9e-06 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 9e-06 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 3e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-05 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-05 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 8e-05 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 1e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 1e-04 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 1e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 1e-04 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 1e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 1e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 1e-04 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 1e-04 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 1e-04 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 2e-04 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 2e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 2e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 3e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 6e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 699 bits (1806), Expect = 0.0
Identities = 259/657 (39%), Positives = 373/657 (56%), Gaps = 21/657 (3%)
Query: 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEE 176
TT++ FL L GLW A+ L +DVIV V+D+GIWPE +FQD GMP +P RWKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 177 GTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVAN 236
GT+F+ S CN KLIGA F KG + +N S RD GHGTH AS AGN
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNI--TMNSARDTDGHGTHCASITAGNFAKG 118
Query: 237 ANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSR 296
+ FG A G A G+ +R+A YK ++ G +SD++AA+D+AVADGVD++S+S G
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 297 PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356
P Y D ++IASFGA GV VS SAGN GP I +++N +PWI+ VA+ +TDR+F + L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 357 GNGHSFEGSSLYSGK-GSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS 415
GNG G SL+ + + P+++ KT +E ++ N + IVIC +
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVEN---PENTIVICDDNGDF 295
Query: 416 RTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTA 475
+ + A + ++ D + P + GK V YV ++ PTA
Sbjct: 296 SD-QMRIITRARLKAAIFISED--PGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTA 352
Query: 476 SIVFKGTVFGN-PAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSD 534
+I F+ T PAPV+A+ S+RGPS + KPD+ APGV ILAA+P + + ++
Sbjct: 353 TITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTN 412
Query: 535 DRR-VLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADV 593
+ + SGTSM+ PH +G+AA+LK+ H +WS +AI+SA+MTTA L+N PI D
Sbjct: 413 ILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD- 471
Query: 594 GGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNF 653
S + AT G+GHVDP A DPGL+YD +DY++ LCSLN+T Q A +
Sbjct: 472 --SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 654 TCPNPSAFHPGKLNYPSFAV--NFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVL 711
+ + LNYPSF + +GN + +++R+VTNVG TY K++ P
Sbjct: 530 SHNCSNP--SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNST 587
Query: 712 VTITPPILSFQKIGEILSYKVTFVSLRGASNE-SFGSLTWVS--GKYAVKSPIAVTW 765
++++P IL F+ E SY +T + + GS+TWV G ++V+SPI +
Sbjct: 588 ISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 690 bits (1781), Expect = 0.0
Identities = 266/655 (40%), Positives = 372/655 (56%), Gaps = 42/655 (6%)
Query: 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEE 176
TT S FLG + + + +++VGV+DTGIWPE +F D G P P +WKG CE
Sbjct: 1 TTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 177 GTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVAN 236
F CN K+IGAR++ G G D PRD GHGTHTASTAAG +V+
Sbjct: 59 SNNF---RCNRKIIGARSYHIGRPISPG------DVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 237 ANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSS- 295
ANL+GL G A G +RIAAYK CW+ GCS +DILAA D A+ADGVD++SLS+GG++
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 296 RPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVK 355
R Y+ D +AI SF A + G+ S SAGN GP+ T + +PW+++VAAS DR F V+
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSG-----AEYCINGSLNRKLVKGKIVICQ 410
+GNG SF+G S+ + + PLV G+ +G + +C + S+N L+KGKIV+C+
Sbjct: 230 IGNGQSFQGVSINTFDN-QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE 288
Query: 411 RGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNST 470
E K GA +L+ S AD++ LP++ L + A +Y+ S
Sbjct: 289 ASFGPH----EFFKSLDGAAGVLMTS---NTRDYADSYPLPSSVLDPNDLLATLRYIYSI 341
Query: 471 KRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM 530
+ P A+I T+ APV+ SFSSRGP+ DVIKPD++ PGV ILAAWP+
Sbjct: 342 RSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG 401
Query: 531 LKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590
R LFNIISGTSMSCPH++G+A +K+ + WS AAIKSALMTTA +N R +P
Sbjct: 402 ---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQ 458
Query: 591 ADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAG 650
A+ FA+GSGHV+P A PGL+YD DY+ +LC Y + + G
Sbjct: 459 AE------------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG 506
Query: 651 GNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGV 710
C + + LNYPSF ++ + + + + R++T+V TY + P G+
Sbjct: 507 DYSACTSGNTGRVWDLNYPSFGLSVSPS-QTFNQYFNRTLTSVAPQASTYRAMISAPQGL 565
Query: 711 LVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWVSGKYAVKSPIAVTW 765
+++ P +LSF +G+ S+ +T SL W G + V+SPI +T
Sbjct: 566 TISVNPNVLSFNGLGDRKSFTLTVRG-SIKGFVVSASLVWSDGVHYVRSPITITS 619
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 491 bits (1266), Expect = e-162
Identities = 131/636 (20%), Positives = 211/636 (33%), Gaps = 84/636 (13%)
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSN----CN 186
L + +V VID G H A++ T + K E+ K N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 187 NKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGK 246
+K+ + Q HGTH + +G NA +
Sbjct: 68 DKVAYYHDY--------------SKDGKTAVDQEHGTHVSGILSG----NAPSETKEPYR 109
Query: 247 AAGMRYTSRIAAYKACWSLGCS--SSDILAAIDKAVADGVDVLSLSLGGSSRPYYR--DT 302
G +++ + G + + + AI A+ G V+++S G ++ Y D
Sbjct: 110 LEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDE 169
Query: 303 VAIASFGATQSGVFVSCSAGNSG-------------PSISTVD--NTAPWIMTVAASYTD 347
A A GV + SAGN P V A +TVA+ D
Sbjct: 170 TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPD 229
Query: 348 RSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIV 407
+ V++ + A + K VKGKI
Sbjct: 230 KQLTETVRVKTADQQDKEMPVLSTNR-----FEPNKAYDYAYANRGTKEDDFKDVKGKIA 284
Query: 408 ICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL-IADAHVLPAATLGASAGKAVKKY 466
+ +RG K + K AG G+L+ ++ +G + + + +PAA + G +K
Sbjct: 285 LIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDN 344
Query: 467 VNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT 526
T A+ T ++ FSS G + IKPD+ APG +IL++
Sbjct: 345 PQKTITFNATPKVLPTA---SGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVANNK 399
Query: 527 SPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYT-LNN 585
+ +SGTSMS P V+G+ LL+ +E S + A L +
Sbjct: 400 -------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMS 446
Query: 586 RNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQL 645
+ + D + + G+G VD + AS + +D LN S +
Sbjct: 447 SATALYD---EDEKAYFSPRQQGAGAVDAKKASAATMYVT--DKDNTSSKVHLNNVSDKF 501
Query: 646 ALFAGGNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVE 705
+ N S P +L Y + K + K+ +L TS+ +
Sbjct: 502 EV----TVNVHNKSD-KPQELYYQATVQTDKVDGKHFAL---APKVLYETSWQKITIPAN 553
Query: 706 EPNGVLVTITPPILSFQ-----KIGEILSYKVTFVS 736
V V I S K G L V F
Sbjct: 554 SSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQ 589
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 7e-33
Identities = 100/511 (19%), Positives = 166/511 (32%), Gaps = 123/511 (24%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
L D+ A + + +ID+G H + GT S +
Sbjct: 16 LSDSQ--AGNRTICIIDSGYDRSHNDLNANNVT------------GTNNSGTG------- 54
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
++ P + HGTH A T A A AN G+ G
Sbjct: 55 -------------------NWYQPGNNNAHGTHVAGTIA----AIANNEGVV-GVMPN-- 88
Query: 252 YTSRIAAYKACWSLGC-SSSDILAAIDKAV-ADGVDVLSLSLGGSSR-PYYRDTVAIASF 308
+ I K G SS ++AAID V + G +V+++SLGGS R+ A+ +
Sbjct: 89 QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERN--ALNT- 145
Query: 309 GATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFP----------------A 352
+GV + +AGN+G S + + +M+VAA ++ A
Sbjct: 146 -HYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEA 204
Query: 353 IVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGV----SGAEYCINGSLNRKLVKGKIVI 408
I+ + + G S V S A IN S L + +
Sbjct: 205 ILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNG 264
Query: 409 CQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVN 468
+ K V+ G G + + A SA ++
Sbjct: 265 TSFSCGNMANKICLVERVGNQGSSYPEINS--TKACKTAGAKGIIVYSNSALPGLQNPFL 322
Query: 469 STKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSP 528
++ +V + A +A + G S V+ G
Sbjct: 323 VDANSDITVP---SVSVDRATGLALKAKLGQST--------TVSNQGNQD---------- 361
Query: 529 SMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNS 588
+ +GTSM+ PHVSG+A L+ S H + S + +++AL TA
Sbjct: 362 -----------YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD------- 403
Query: 589 PIADVGGSSDTPLATAFAFGSGHVDPESASD 619
++ G + G G ++ +A
Sbjct: 404 DLSVAGRDN--------QTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-26
Identities = 77/338 (22%), Positives = 123/338 (36%), Gaps = 78/338 (23%)
Query: 36 IAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQL 95
+ S Q +I N+ ++ + + +I Y Y I + K+ K L
Sbjct: 23 LFKKVQRMSWDQEVSTIIMFDNQADKEKAVEILDFLGAKIKYNYH-IIPALAVKIKVKDL 81
Query: 96 KSLETVD-----------GFLSATPDELLTLHTTYSPHFLGLESGI------GLWDATNL 138
+ + G D ++ + GL+ +W+
Sbjct: 82 LIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETE----GLDESAAQVMATNMWNLGYD 137
Query: 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG 198
+ +G+IDTGI H Q
Sbjct: 138 GSGITIGIIDTGIDASHPDLQG-------------------------------------- 159
Query: 199 YESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAA 258
V+G ++ +P D GHGTH AS AAG A+ GK GM +++
Sbjct: 160 --KVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVG 210
Query: 259 YKACWSLG-CSSSDILAAIDKAVAD----GVDVLSLSLGGSSRPYYRDTVAIASFGATQS 313
K G S SDI+ +D AV + G+ V++LSLG S D+++ A A +
Sbjct: 211 IKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDA 270
Query: 314 GVFVSCSAGNSGPSISTVDN--TAPWIMTVAASYTDRS 349
G+ V +AGNSGP+ TV + A ++TV A D+
Sbjct: 271 GLVVVVAAGNSGPNKYTVGSPAAASKVITVGA--VDKY 306
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
I FSSRGP+ +KP+V APG I+AA + TS +D + GT+M+
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG-GSSDTPLATAFAFGS 609
PHV+G+AALL H W+ +K+AL+ TA + G G + A + +
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNAYKAAYYDNYA 422
Query: 610 GHVDPESASDPG 621
S+ G
Sbjct: 423 KLTFTGYVSNKG 434
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 24/251 (9%)
Query: 105 LSATPDELLTLHTTYSPHFLGLESGI----GLWDATNLAKDVIVGVIDTGIWPEHIAFQD 160
+SA+ E + H L+ I L + T + + +ID F+
Sbjct: 10 VSASEVESSATKQKVALHPHDLDERIPGLADLHNQTLGDPQITIVIIDGDPDYTLSCFEG 69
Query: 161 TGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQG 220
+ V W E + KG E D +
Sbjct: 70 AEVSKVFPYWHEP-AEPITPEDYAAFQSIRDQG--LKGKEKEEALEAVIPDTKDRIVLND 126
Query: 221 HGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSS------DILA 274
H H ST IV + G+ R+ + + ++
Sbjct: 127 HACHVTST----IVGQEH------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLAR 176
Query: 275 AIDKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDN 333
AID A+ G +++ + ++ + + A + V + GN+ +
Sbjct: 177 AIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPA 236
Query: 334 TAPWIMTVAAS 344
P + V A+
Sbjct: 237 VLPGTLAVGAA 247
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 34/131 (25%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
FS+ G + K + APG IL A P T ++GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE------------PVRLTGTSMAA 295
Query: 551 PHVSGLAALLKSVH----EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
P ++G++ALL S+ + A+++AL+ TA + +
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD-------------PEVVEEPER 342
Query: 607 FGSGHVDPESA 617
G V+ A
Sbjct: 343 CLRGFVNIPGA 353
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 7e-23
Identities = 51/220 (23%), Positives = 75/220 (34%), Gaps = 54/220 (24%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
+T + + V+DTG+ H + +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN---------------------------NVEQC 51
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+ F G T S D GHGTH A TA + ++ G+
Sbjct: 52 KDF-------TG--ATTPINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAP 95
Query: 253 TSRIAAYKACWSLG-CSSSDILAAIDKAVADGV-----DVLSLSLGGSSRPYYRDTVAIA 306
+ + AYK G S DI AAI A ++S+SLG S+ ++ A
Sbjct: 96 DADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA---NNSLISSA 152
Query: 307 SFGATQSGVFVSCSAGNSGPSISTVDN--TAPWIMTVAAS 344
A GV + +AGNSG S T+ P + VAA
Sbjct: 153 VNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAAL 192
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-22
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 486 NPAPVIASFSSRGPSLVGHDVI----KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFN 541
N +A +SSRG D + +++APG ++ + W +N
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-------------YN 244
Query: 542 IISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPL 601
ISGTSM+ PHVSGLAA + + + S ++S L A +++ + A +G
Sbjct: 245 TISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIG------- 297
Query: 602 ATAFAFGSGHVD 613
+A G G
Sbjct: 298 -DDYASGFGFAR 308
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 39/127 (30%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFSS GP + DV APGV+I + P + +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGNK-------------YGAYNGTSMAS 224
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKG 266
Query: 611 HVDPESA 617
++ ++A
Sbjct: 267 LINVQAA 273
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 55/224 (24%), Positives = 80/224 (35%), Gaps = 62/224 (27%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
L +V V VID+GI H K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDL-----------------------------KVAG 46
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
+ + +D HGTH A T A A N G+ G+
Sbjct: 47 GASMVPS------------ETNPFQDNNSHGTHVAGTVA----ALNNSIGVL-----GVA 85
Query: 252 YTSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFG 309
++ + A K + G S I+ I+ A+A+ +DV+++SLGG S + V
Sbjct: 86 PSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----K 141
Query: 310 ATQSGVFVSCSAGNSGPSISTVDNT----APWIMTVAASYTDRS 349
A SGV V +AGN G S S+ P ++ V A D S
Sbjct: 142 AVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA--VDSS 183
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-23
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 39/127 (30%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFSS G + +V APG + + +P T + ++GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMAS 223
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G AAL+ S H + S + +++ L +TA T L ++F +G G
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGKG 265
Query: 611 HVDPESA 617
++ E+A
Sbjct: 266 LINVEAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 57/222 (25%), Positives = 78/222 (35%), Gaps = 61/222 (27%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
+V V V+DTGI H
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDLN--------------------------------- 43
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
VVG + D GHGTH A T A A N G+ G+
Sbjct: 44 ---------VVGGASFVAGEAYNTDGNGHGTHVAGTVA----ALDNTTGVL-----GVAP 85
Query: 253 TSRIAAYKACWSLGC-SSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGAT 311
+ + A K S G S S I++ I+ A +G+DV+++SLGG+S + A A
Sbjct: 86 SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS---GSTAMKQAVDNAY 142
Query: 312 QSGVFVSCSAGNSGPSISTVDNT----APWIMTVAASYTDRS 349
GV V +AGNSG S ST ++ V A D +
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA--VDSN 182
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 33/154 (21%)
Query: 485 GNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIIS 544
+ +++SR P + G V APG I + T S S L ++
Sbjct: 413 EKLPGNVYTWTSRDPCIDGG--QGVTVCAPGGAIASVPQFTMSKSQL-----------MN 459
Query: 545 GTSMSCPHVSGLAALLKSV----HEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600
GTSM+ PHV+G ALL S + ++S +IK A+ TA L +
Sbjct: 460 GTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD------------- 506
Query: 601 LATAFAFGSGHVDPESASDPGLIYDIATEDYLDY 634
FA G G ++ E A + + + ++ L +
Sbjct: 507 ---PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRF 537
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 7e-20
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 215 PRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC---SSSD 271
+ HGTH +S A+GN +++ G+ ++I + + +
Sbjct: 266 VGMSSPHGTHVSSIASGN---HSS------RDVDGVAPNAKIVSMTIGDGRLGSMETGTA 316
Query: 272 ILAAIDKAV-----ADGVDVLSLSLGGSSRPYYRDTVAIASFGAT-QSGVFVSCSAGNSG 325
++ A+ K + +DV+++S G + + + GV SAGN G
Sbjct: 317 LVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHG 376
Query: 326 PSISTVDN----TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGS 373
P++ TV + P ++ V A + + A + + ++ +
Sbjct: 377 PALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVYT-WTSRDP 427
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 5e-22
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 39/127 (30%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFS G L D+ APGVN+ + +P +T + ++GTSM+
Sbjct: 180 RASFSQYGAGL--------DIVAPGVNVQSTYPGST-------------YASLNGTSMAT 218
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G AAL+K + WS I++ L TA T L + +GSG
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTA------------------TSLGSTNLYGSG 260
Query: 611 HVDPESA 617
V+ E+A
Sbjct: 261 LVNAEAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 53/219 (24%), Positives = 75/219 (34%), Gaps = 58/219 (26%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+ V V V+DTGI H
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDLN-------------------------------- 42
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
+ G + S +D GHGTH A T A A N G+ G+
Sbjct: 43 ----------IRGGASFVPGEPSTQDGNGHGTHVAGTIA----ALNNSIGVL-----GVA 83
Query: 252 YTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
++ + A K + G S S I ++ A +G+ V +LSLG S T+ A A
Sbjct: 84 PSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPS---ATLEQAVNSA 140
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
T GV V ++GNSG + M V A TD++
Sbjct: 141 TSRGVLVVAASGNSGAGSISYPARYANAMAVGA--TDQN 177
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 4e-21
Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 54/234 (23%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
+D + + +IDTG+ H ++
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN---------------------------NFSTD 171
Query: 193 RAFFKGYESVVGRIN-ETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
G ET D D +GHGT + + N GK G+
Sbjct: 172 SKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSAN------------GKLIGVA 219
Query: 252 YTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFG-- 309
++ Y+ S + AI +A DG V+++S+G D
Sbjct: 220 PNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKV 279
Query: 310 -----------ATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPA 352
A + V +AGN G ++ + PA
Sbjct: 280 EYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEV-KDVPA 332
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 4e-16
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 33/137 (24%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL---------FN 541
++ FS+ G + D+ APG + M + + +
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 542 IISGTSMSCPHVSGLAALLKS-VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600
+GT+++ P VSG AL+ H + L +
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG----------TSKNNKPFS- 450
Query: 601 LATAFAFGSGHVDPESA 617
+G G +D A
Sbjct: 451 -----RYGHGELDVYKA 462
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 4e-21
Identities = 57/330 (17%), Positives = 101/330 (30%), Gaps = 87/330 (26%)
Query: 56 INKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTL 115
++ ++ E I+Y ++ I + + L+ + G D L
Sbjct: 7 VSVDKAKFNPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 65
Query: 116 HTTYSPHFLGLE----------SGIGL---WDATNLAKD-VIVGVIDTGIWPEHIAFQDT 161
S G + W T+ + + V V+DTG+ +H
Sbjct: 66 LGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA- 124
Query: 162 GMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGH 221
+ + +G + R D GH
Sbjct: 125 --------------------------NIAWCVSTLRG--------KVSTKLRDCADQNGH 150
Query: 222 GTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC-SSSDILAAIDKAV 280
GTH T A A N G G+ +I + + + G S SDI I++A+
Sbjct: 151 GTHVIGTIA----ALNNDIG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAI 201
Query: 281 AD--------------------GVDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVSC 319
+V+S+SLGG + Y D + A +G+ +
Sbjct: 202 LGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIVA 257
Query: 320 SAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
++GN G + P ++ V A D +
Sbjct: 258 ASGNEGAPSPSYPAAYPEVIAVGA--IDSN 285
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 51/140 (36%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R P +V+APGV+IL+ +P + + + GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMAT 324
Query: 551 PHVSGLAALLKSVHE-------------DWSTAAIKSALMTTAYTLNNRNSPIADVGGSS 597
PHVSG+ AL+++ + D S ++ L TA D+G +
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD----------DLGPTG 374
Query: 598 DTPLATAFAFGSGHVDPESA 617
+G G V A
Sbjct: 375 WDA-----DYGYGVVRAALA 389
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 54/219 (24%), Positives = 75/219 (34%), Gaps = 56/219 (25%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
WD T + + VIDTG+ H + G
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDG--------KVIKG------------------- 56
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+ + P D HGTH A AA N N G+A GM
Sbjct: 57 -------------YDFVDNDYDPMDLNNHGTHVAGIAAA--ETN-NATGIA-----GMAP 95
Query: 253 TSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGA 310
+RI A +A G + SDI AI A G +V++LSLG + V A
Sbjct: 96 NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YA 151
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
G V +AGN+G S + + ++ V A D+
Sbjct: 152 WNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA--VDQY 188
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 6e-18
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 40/127 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ASFS+ G + DV APGV+I++ + +SGTSM+
Sbjct: 191 LASFSNYGTWV--------DVVAPGVDIVSTITGNR-------------YAYMSGTSMAS 229
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+GLAALL S + I+ A+ TA + G+ F G
Sbjct: 230 PHVAGLAALLASQG--RNNIEIRQAIEQTA----------DKISGTGTY-------FKYG 270
Query: 611 HVDPESA 617
++ +A
Sbjct: 271 RINSYNA 277
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 57/219 (26%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
WD + ++DTG+ H + GG
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG--------KVVGG------------------- 55
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+ + +P++ GHGTH A AA N G+A G
Sbjct: 56 -------------WDFVDNDSTPQNGNGHGTHCAGIAAA---VTNNSTGIA-----GTAP 94
Query: 253 TSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGA 310
+ I A + + G + + + I A G V+SLSLGG+ + V A
Sbjct: 95 KASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YA 150
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
G V +AGN+G + + VA+ TD++
Sbjct: 151 WNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVAS--TDQN 187
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 40/127 (31%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+SFS+ G + DV APG +I + +P +T + +SGTSM+
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTYPTST-------------YASLSGTSMAT 228
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G+A LL S S + I++A+ TA + G+ + G
Sbjct: 229 PHVAGVAGLLASQG--RSASNIRAAIENTA----------DKISGTGTY-------WAKG 269
Query: 611 HVDPESA 617
V+ A
Sbjct: 270 RVNAYKA 276
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 7e-20
Identities = 50/231 (21%), Positives = 73/231 (31%), Gaps = 64/231 (27%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+W A+ I+GVIDTG +H + ++IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIG 65
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
Y D + D GHGTH A T A A G+
Sbjct: 66 GVNLTTDYGG---------DETNFSDNNGHGTHVAGTVAA---AETG------SGVVGVA 107
Query: 252 YTSRIAAYKACWSLGC-SSSDILAAIDKAV------ADGVDVLSLSLGGSSR-PYYRDTV 303
+ + KA G I AI AV + + ++++SLGG + D V
Sbjct: 108 PKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAV 167
Query: 304 AIASFGATQSGVFVSCSAGNSGPSISTVDNT-----APWIMTVAASYTDRS 349
A + V V C+AGN G + ++ V A D
Sbjct: 168 K----YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA--VDFD 212
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 26/98 (26%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
++ F++ + D+ APGV I + + + + +SGT+M+
Sbjct: 215 LSDFTNTNEEI--------DIVAPGVGIKSTYLDSG-------------YAELSGTAMAA 253
Query: 551 PHVSGLAALLKSVHED-----WSTAAIKSALMTTAYTL 583
PHV+G AL+ ++ ED S I + L+ A +
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI 291
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 38/231 (16%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
WD ++V+V V+DTGI H G + + S +
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-HRDLNA--------NVLPGYDFISNSQISLDGDGRDAD 75
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+ + D+ HG+H A T A N G+ AG+ Y
Sbjct: 76 PFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAA---VTNNRIGV-----AGVAY 127
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAV----------ADGVDVLSLSLGGSSRPYYRDT 302
+++ +A G SDI + A + V+++SLG + Y
Sbjct: 128 GAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQ 187
Query: 303 VAIASFGATQSGVFVSCSAGNSGPSISTVDNTAP----WIMTVAASYTDRS 349
I AT+ G V +AGN + NT P +++V A T
Sbjct: 188 TMIDR--ATRLGALVVVAAGNENQN---ASNTWPTSCNNVLSVGA--TTSR 231
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 34/131 (25%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFS+ G + D+ APG +IL+ + T + + ++ ++GTSM+
Sbjct: 234 RASFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMAT 279
Query: 551 PHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFA 606
PHVSG+AAL+ S V+++ + A +K L++T + G D A
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDR------A 323
Query: 607 FGSGHVDPESA 617
GSG VD E+A
Sbjct: 324 LGSGIVDAEAA 334
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 43/241 (17%), Positives = 68/241 (28%), Gaps = 52/241 (21%)
Query: 132 LWDATNL-AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
+ L + IV V DTG+ K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAF---------------------RGKIT 51
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
A + D GHGTH A + GN GM
Sbjct: 52 ALYAL--------------GRTNNANDTNGHGTHVAGSVLGNG-----------STNKGM 86
Query: 251 RYTSRIAAYKACWSLGCSS---SDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIAS 307
+ + S G S++ +A + G + + S G + Y
Sbjct: 87 APQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVD 146
Query: 308 FGATQSGVFVSCSAGNSGPSISTVDN--TAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365
++ + + +AGN GP+ T+ TA +TV A+ R H + S
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFS 206
Query: 366 S 366
S
Sbjct: 207 S 207
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 7e-18
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Query: 473 PTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLK 532
T ++ + + +A FSSRGP+ G KPDV APG IL+A + P
Sbjct: 184 ATENLRPSFGSYADNINHVAQFSSRGPTKDGRI--KPDVMAPGTFILSARSSLA-PDSSF 240
Query: 533 SDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIAD 592
+ + + GTSM+ P V+G A L+ K +L+ A D
Sbjct: 241 WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAA-----D 295
Query: 593 VGGSSDTPLATAFAFGSGHVDPESASDPGLIYD 625
+G G G V + + + + +
Sbjct: 296 IGLGYP-----NGNQGWGRVTLDKSLNVAYVNE 323
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 3e-19
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 486 NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVL-----F 540
+A FSSR + V APGV IL+ P S ++ +
Sbjct: 323 GGTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374
Query: 541 NIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600
+ GTSM+ PHV+G+ A+L + I+ L TA+ D G+
Sbjct: 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF----------DFNGNGWDH 424
Query: 601 LATAFAFGSGHVDPESA 617
G G V ++A
Sbjct: 425 -----DTGYGLVKLDAA 436
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 1e-15
Identities = 51/315 (16%), Positives = 80/315 (25%), Gaps = 73/315 (23%)
Query: 51 AVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPD 110
I Q D+ + I Y + + ++
Sbjct: 65 VSIKLNGMTVKQAYDKIKALALKGIRYVEPSYK------RELIKPTVVKPNPDMYKIRKP 118
Query: 111 ELLTLHTTYSPHFLGLESGIGLWDATNLA------KDVIVGVIDTGIWPEHIAFQDTGMP 164
L + Y G+ T ++IV V+DTG+ H +
Sbjct: 119 GLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEG---- 174
Query: 165 PVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTH 224
++I E GTH
Sbjct: 175 -----------------------QVIAGYRPAFD--------EELPAGTDSSYGGSAGTH 203
Query: 225 TASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC-------SSSDILAAID 277
A T A A + G G+ ++I + A I
Sbjct: 204 VAGTIA----AKKDGKG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGII 254
Query: 278 KAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTA- 335
A G V++ S GG ++ A A + GV + SAGN+ S A
Sbjct: 255 WATDHGAKVMNHSWGGWGYSYTMKE--AFDY--AMEHGVVMVVSAGNNTSD-SHHQYPAG 309
Query: 336 -PWIMTVAASYTDRS 349
P ++ VAA D
Sbjct: 310 YPGVIQVAA--LDYY 322
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 3e-18
Identities = 50/286 (17%), Positives = 86/286 (30%), Gaps = 71/286 (24%)
Query: 74 QILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLG----LESG 129
+IL+ + + GF K+S L+ + D ++ P L
Sbjct: 110 KILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS--SVFAQSIPWNLERITPPRYR 167
Query: 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKL 189
+ + V V ++DT I +H
Sbjct: 168 ADEYQPPDGGSLVEVYLLDTSIQSDHREI------------------------------- 196
Query: 190 IGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAG 249
R V + T +R HGTH A +G G+A+G
Sbjct: 197 -EGRVMV-TDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD------AGVAKG---- 244
Query: 250 MRYTSRIAAYKACWSLGC----SSSDILAAIDKAVAD------GVDVLSLSLGGSSRPYY 299
+ + + + L C + S L ++ G V+ L L G Y
Sbjct: 245 ----ASMRSLRV---LNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG----Y 293
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
+ A ++GV + +AGN +AP ++TV A+
Sbjct: 294 SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGAT 339
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 7e-14
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 17/164 (10%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ + G + G V D+ APG +I+ A ++ SGTS +
Sbjct: 345 PVTLGTLG-TNFGRCV---DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAA 389
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA--YTLNNRNSPIADVGGSSDTPLATAFAFG 608
HV+G+AA++ S + + A ++ L+ + +N P + + A +
Sbjct: 390 AHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTH 449
Query: 609 SGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGN 652
+ C+ + L + F+
Sbjct: 450 GAGWQLFCRTVWSAHSGPTRMATAIARCAPDEELLSCSSFSRSG 493
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 3e-18
Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 27/162 (16%)
Query: 423 VKLAGGAGMLLL----NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIV 478
++ L++ N + +L A + PAA S+ + V A
Sbjct: 167 SRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR---VAALAQ 223
Query: 479 FKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRV 538
++ + S G + V D+ APG NI P
Sbjct: 224 YRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRPDAK------------ 264
Query: 539 LFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
SGTS + VSG+ A + S + + +K L+ +A
Sbjct: 265 -TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESA 305
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 69/251 (27%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
T+ V+V V+D+G+ ++
Sbjct: 37 MSLTDKNTPVVVSVVDSGVAFIG----------------------------GLSDSEFAK 68
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+F + + HGT AS A +R G+
Sbjct: 69 FSF-------TQDGSPFPV-KKSEALYIHGTAMASLIA------------SRYGIYGVYP 108
Query: 253 TSRIAAYKACWSLGCSS----SDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASF 308
+ I++ + S + + + ++++S G + S
Sbjct: 109 HALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR 168
Query: 309 GATQSGVFVSCSAGNSGPSISTVDNTAP-----------------WIMTVAASYTDRSFP 351
+ + + GN G I + ++ VAA R
Sbjct: 169 MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGE 228
Query: 352 AIVKLGNGHSF 362
V G G +
Sbjct: 229 TPVLHGGGITG 239
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 49/240 (20%), Positives = 80/240 (33%), Gaps = 73/240 (30%)
Query: 133 WDATNLAKDVI-VGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
W T+ + VI V V+DTG+ +H +
Sbjct: 21 WSITDGSVSVIQVAVLDTGVDYDHPDLAA---------------------------NIAW 53
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
+ +G + R D GHGTH T A A N G G+
Sbjct: 54 CVSTLRG--------KVSTKLRDCADQNGHGTHVIGTIA----ALNNDIG-----VVGVA 96
Query: 252 YTSRIAAYKACWSLGC-SSSDILAAIDKAVAD--------------------GVDVLSLS 290
+I + + + G S SDI I++A+ +V+S+S
Sbjct: 97 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMS 156
Query: 291 LGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRS 349
LGG + Y D + A +G+ + ++GN G + P ++ V A D +
Sbjct: 157 LGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA--IDSN 210
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 51/140 (36%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
IASFS+R P +V+APGV+IL+ +P + + + GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDDS-------------YETLMGTAMAT 249
Query: 551 PHVSGLAALLKSVHE-------------DWSTAAIKSALMTTAYTLNNRNSPIADVGGSS 597
PHVSG+ AL+++ + D S ++ L TA D+G +
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD----------DLGPTG 299
Query: 598 DTPLATAFAFGSGHVDPESA 617
+G G V A
Sbjct: 300 WDA-----DYGYGVVRAALA 314
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+SFS+ G L D+ APG +I ++W + S + N ISGTSM+
Sbjct: 187 RSSFSNYGTCL--------DIYAPGSSITSSWYTSNSAT-----------NTISGTSMAS 227
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+G+AAL + + S A + + L T A
Sbjct: 228 PHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 68/212 (32%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
V VIDTG+ H F G RA GY
Sbjct: 31 SGVTAFVIDTGVLNTHNEF--------------------------------GGRASS-GY 57
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
+ + + T D GHGTH A T G+ +G+A+ +
Sbjct: 58 DFIDNDYDAT-------DCNGHGTHVAGTIGGST------YGVAKN--------VNVVGV 96
Query: 260 KACWSLGC----SSSDILAAIDKAVADGV--DVLSLSLGGSSRPYYRDTVAIASFGATQS 313
+ L C S+S ++A I+ + V ++SLGG + D V A +
Sbjct: 97 RV---LNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAA 149
Query: 314 GVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
G+ +AGN + A +TV ++
Sbjct: 150 GITFVVAAGNDNSNACNYSPARAADAITVGST 181
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 21/90 (23%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+SFS+ G + D+ APG I +AW ISGTSM+
Sbjct: 185 RSSFSNWGSCV--------DLFAPGSQIKSAWYDGGY-------------KTISGTSMAT 223
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+G+AAL + + + L + A
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 48/219 (21%), Positives = 72/219 (32%), Gaps = 68/219 (31%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
++A V VIDTG+ H F G
Sbjct: 22 YNANFDGFGVTAYVIDTGVNNNHEEF--------------------------------GG 49
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
R+ GY + + D GHGTH A T G+ +G+A+
Sbjct: 50 RSVS-GY-------DFVDNDADSSDCNGHGTHVAGTIGGSQ------YGVAKN------- 88
Query: 253 TSRIAAYKACWSLGC----SSSDILAAIDKAVADGV--DVLSLSLGGSSRPYYRDTVAIA 306
I + L C ++S +++ +D + V ++SLGG V
Sbjct: 89 -VNIVGVRV---LSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ-- 142
Query: 307 SFGATQSGVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
GA QSGV +AGNS P +TV ++
Sbjct: 143 --GAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGST 179
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 19/90 (21%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFS+ G + D+ APG +I +AW + + + ++GTSM+
Sbjct: 185 RASFSNYGSCV--------DLFAPGASIPSAWYTSDTAT-----------QTLNGTSMAT 225
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+G+AAL + + A++ SA++ A
Sbjct: 226 PHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 70/212 (33%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
+ V V VIDTGI H F G RA GY
Sbjct: 31 RGVNVYVIDTGIRTTHREF--------------------------------GGRARV-GY 57
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
+++ G + +D GHGTH A T G +G+A+ + A
Sbjct: 58 DALGG---------NGQDCNGHGTHVAGTIGGVT------YGVAKA--------VNLYAV 94
Query: 260 KACWSLGC----SSSDILAAIDKAVADGVD--VLSLSLGGSSRPYYRDTVAIASFGATQS 313
+ L C S+S ++A +D + V ++SLGG + A + +
Sbjct: 95 RV---LDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGG----VSTALDNAVKNSIAA 147
Query: 314 GVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
GV + +AGN + +TV A+
Sbjct: 148 GVVYAVAAGNDNANACNYSPARVAEALTVGAT 179
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+ + G + G V D+ APG +I+ A ++ SGTS +
Sbjct: 193 PVTLGTLG-TNFGRCV---DLFAPGEDIIGASSDCSTCF-----------VSQSGTSQAA 237
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
HV+G+AA++ S + + A ++ L+ +
Sbjct: 238 AHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 40/216 (18%), Positives = 65/216 (30%), Gaps = 65/216 (30%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
V V ++DT I +H R
Sbjct: 26 SLVEVYLLDTSIQSDHREI--------------------------------EGRVMV-TD 52
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
V + T +R HGTH A +G G+A+G + + +
Sbjct: 53 FENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD------AGVAKG--------ASMRSL 98
Query: 260 KACWSLGC----SSSDILAAIDKAVAD------GVDVLSLSLGGSSRPYYRDTVAIASFG 309
+ L C + S L ++ G V+ L L G Y + A
Sbjct: 99 RV---LNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAACQR 151
Query: 310 ATQSGVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
++GV + +AGN +AP ++TV A+
Sbjct: 152 LARAGVVLVTAAGNFRDDACLYSPASAPEVITVGAT 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 22/90 (24%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
++FS+ G + D+ APG +I + W + N ISGTSM+
Sbjct: 190 RSTFSNYGRVV--------DIFAPGTSITSTWIGGRT-------------NTISGTSMAT 228
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PH++GLAA L + S A+ + T +
Sbjct: 229 PHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 52/217 (23%), Positives = 69/217 (31%), Gaps = 76/217 (35%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
V VIDTG+ H F RA
Sbjct: 32 AGACVYVIDTGVEDTHPDF--------------------------------EGRAKQ-IK 58
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
S + RD GHGTH A T +G+A K I
Sbjct: 59 -SYAS---------TARDGHGHGTHCAGTIGSKT------WGVA--KKV------SIFGV 94
Query: 260 KACWSLGC----SSSDILAAIDKAVADGVD-------VLSLSLGGSSRPYYRDTVAIASF 308
K L S S+I+A +D +D V S+SLGG Y + A+
Sbjct: 95 KV---LDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG----YSAALNQAAA 147
Query: 309 GATQSGVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
SGVFV+ +AGN + + P + TV A+
Sbjct: 148 RLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGAT 184
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 22/90 (24%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+SFS+ G L D+ PG +IL+ W ++ ISGTSM+
Sbjct: 189 RSSFSNYGSVL--------DIFGPGTDILSTWIGGST-------------RSISGTSMAT 227
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTA 580
PHV+GLAA L + + A+ + TA
Sbjct: 228 PHVAGLAAYLMT-LGKTTAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 51/217 (23%), Positives = 69/217 (31%), Gaps = 76/217 (35%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
+ V VIDTGI H F RA
Sbjct: 31 QGSCVYVIDTGIEASHPEF--------------------------------EGRAQM-VK 57
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
RD GHGTH A T +G+A+ +++
Sbjct: 58 TYYYS----------SRDGNGHGTHCAGTVGSRT------YGVAKK--------TQLFGV 93
Query: 260 KACWSLGC----SSSDILAAIDKAVADGVD-------VLSLSLGGSSRPYYRDTVAIASF 308
K L S I+A +D +D + V SLSLGG Y +V A+
Sbjct: 94 KV---LDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAA 146
Query: 309 GATQSGVFVSCSAGNSGPSISTVD-NTAPWIMTVAAS 344
SGV V+ +AGN+ + P + TV AS
Sbjct: 147 RLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGAS 183
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-07
Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 62/237 (26%)
Query: 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKL 189
+ LW V+ ++D G+ E+ +D
Sbjct: 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAE------------------------ 79
Query: 190 IGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAG 249
G+ F + T + HGT A A N G G
Sbjct: 80 -GSWDF----------NDNTNLPKPRLSDDYHGTRCAGEIAA--KKGNNFCG------VG 120
Query: 250 MRYTSRIAAYKACWSLGC--SSSDILAAIDKAVADGVDVLSLSLGGS------SRPYYRD 301
+ Y ++I+ + L ++ D A++ D D+ S S G + P
Sbjct: 121 VGYNAKISGIRI---LSGDITTEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLV 176
Query: 302 TVAI---ASFGATQSGVFVSCSAGNSGPSISTV----DNTAPWIMTVAASYTDRSFP 351
A+ + G G ++GN G + + +T+ A P
Sbjct: 177 KKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHP 233
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 19/123 (15%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
+S +++ + G I ++ N GTS +
Sbjct: 232 HPPYSEGCSAVMAV----TYSSGSGEYIHSSDINGRC------------SNSHGGTSAAA 275
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
P +G+ LL + + + ++ + +A L + +G G
Sbjct: 276 PLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG---KKYSHRYGFG 332
Query: 611 HVD 613
+D
Sbjct: 333 KID 335
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 57/227 (25%)
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
W ++V ++D GI H N
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG--------------------------NYDP 62
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
GA + + + + HGT A A VAN N G+
Sbjct: 63 GASFDV------NDQDPDPQPRYTQMNDNRHGTRCAGEVAA--VAN-NGVC-----GVGV 108
Query: 251 RYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVLSLSLGGS---------SRPYYR 300
Y +RI L +D + A + + + + S S G +R
Sbjct: 109 AYNARIGG---VRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEE 165
Query: 301 DTVAIASFGATQSGVFVSCSAGNSGPSISTVD----NTAPWIMTVAA 343
S G G ++GN G + + + + +++++
Sbjct: 166 AFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISS 212
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 514 PGVNILAAWPA---TTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTA 570
+ LA + ++ +D R+ +GTS S P +G+ AL +++ +
Sbjct: 225 ACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWR 284
Query: 571 AIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESA 617
++ ++ T+ + A G + ++G G +D +
Sbjct: 285 DMQHLVVQTSKPAHLNADDWATNGVG----RKVSHSYGYGLLDAGAM 327
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.92 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.98 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.84 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.74 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.67 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.42 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.34 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.68 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.82 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.19 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.75 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.25 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 84.3 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 82.37 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-126 Score=1105.18 Aligned_cols=632 Identities=40% Similarity=0.686 Sum_probs=575.6
Q ss_pred cCCCCcccCCccCCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccc
Q 004242 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFF 196 (766)
Q Consensus 117 ~~~s~~~~g~~~~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~ 196 (766)
++++|+|+|+.+..++|..+++|+||+|||||||||++||+|.+.+++++|.+|+|.|+.|.+|+...||+|++|+++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998778899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHH
Q 004242 197 KGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAI 276 (766)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai 276 (766)
++++... .+...+..+++|..||||||||||||+.+++.+.+|++.|++.||||+|+|++||+|+..++..+++++||
T Consensus 81 ~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai 158 (649)
T 3i6s_A 81 KGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAM 158 (649)
T ss_dssp HHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHH
T ss_pred Ccccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHH
Confidence 7765433 22234556789999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEe
Q 004242 277 DKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 277 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+||+++|+||||||||....++..+++.+++++|.++|++||+||||+|+...++++.+||+|+|||+++||.|+..+.+
T Consensus 159 ~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 159 DQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEe
Confidence 99999999999999999877788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeeeeeccCCC-CceeeeEEccCCCCCCCccccCCCCCCCcc--cceEEEEecCCCchhhhhHHHHhcCceEEEE
Q 004242 357 GNGHSFEGSSLYSGKG-SKQLPLVFGKTAGVSGAEYCINGSLNRKLV--KGKIVICQRGLNSRTGKGEQVKLAGGAGMLL 433 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~-~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~--~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 433 (766)
++++++.|.+++.... ...+|++|+. ..+.|.+..++..++ +||||+|.|+.+.+.+|..+++++|+.|+|+
T Consensus 239 gng~~~~g~sl~~~~~~~~~~plv~~~-----~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~ 313 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAFVRDSPVIYNK-----TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFI 313 (649)
T ss_dssp TTSCEEEEECCCSSCBCEEEEEEECCT-----TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEeeeecccCcccCcceeeEecc-----cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEE
Confidence 9999999999988765 6789999976 457899888888877 9999999999999999999999999999999
Q ss_pred ecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEec-CCCCccccccCCCCCCCCCCcccCcEE
Q 004242 434 LNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFG-NPAPVIASFSSRGPSLVGHDVIKPDVT 512 (766)
Q Consensus 434 ~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 512 (766)
+|+. .....+.+.+|+++++..+|+.|++|++++.+++++|.+..+..+ .+++.++.||||||+.+.+++|||||+
T Consensus 314 ~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~ 390 (649)
T 3i6s_A 314 SEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDIL 390 (649)
T ss_dssp CCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCEE
T ss_pred ecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeEE
Confidence 9987 455677889999999999999999999999999999999999988 889999999999999988899999999
Q ss_pred eCCCcEEeecCCCCCCCCCCCCc-cccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccc
Q 004242 513 APGVNILAAWPATTSPSMLKSDD-RRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIA 591 (766)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~ 591 (766)
|||++|+++|+....+.....+. +...|..+||||||||||||+||||||+||+|+|++||++||+||.++++.+.|+.
T Consensus 391 APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~ 470 (649)
T 3i6s_A 391 APGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470 (649)
T ss_dssp EECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCE
T ss_pred eCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCccc
Confidence 99999999998865554444333 44589999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCCccCccccCCCCceecCCchhhHHHhhhcCCCcccceeecccccc--cCCCCCCCCCCCCCC
Q 004242 592 DVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFT--CPNPSAFHPGKLNYP 669 (766)
Q Consensus 592 ~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~lc~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~ln~p 669 (766)
+...+ .++++++||+|+||+.+|++||||||+..+||++|||++||+.++|++|++++++ |+. ...+||||
T Consensus 471 ~~~~~---~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyP 543 (649)
T 3i6s_A 471 DSDNN---KAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYP 543 (649)
T ss_dssp ETTTS---SBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCS
T ss_pred ccccC---CcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCC
Confidence 87655 7889999999999999999999999999999999999999999999999998888 985 45699999
Q ss_pred ceeeec-cCCcccee--EEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCC-eE
Q 004242 670 SFAVNF-KGNVKNMS--LEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNE-SF 745 (766)
Q Consensus 670 s~~~~~-~~~~~~~~--~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~-~~ 745 (766)
||++.+ +.+. ... ++|+|||||||+..+||++.|+.|.|++|+|+|.+|+|++.+|+++|+|||+......+. .|
T Consensus 544 s~~~~~~~~~~-~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~f 622 (649)
T 3i6s_A 544 SFIALYSIEGN-FTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV 622 (649)
T ss_dssp SEEEEECCSSC-CCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCE
T ss_pred cEEeecccCCC-CccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEE
Confidence 999988 4431 012 899999999999999999999999999999999999999889999999999987655555 99
Q ss_pred EEEEEEC--CceeEEeEEEEEeC
Q 004242 746 GSLTWVS--GKYAVKSPIAVTWQ 766 (766)
Q Consensus 746 G~~~~~~--~~~~v~~p~~v~~~ 766 (766)
|+|+|++ ++|.||+||+|.++
T Consensus 623 g~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 623 GSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999 99999999999874
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-113 Score=1000.22 Aligned_cols=612 Identities=43% Similarity=0.749 Sum_probs=515.7
Q ss_pred cCCCCcccCCccCCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccc
Q 004242 117 TTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFF 196 (766)
Q Consensus 117 ~~~s~~~~g~~~~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~ 196 (766)
++++|+|+||++ .+|.+..+|+||+|||||||||++||+|+++++++++.+|+|.|+.+.+| .||+|++|+++|.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CCCSSEEEEEECC
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---ccCcceeeeeecc
Confidence 578999999964 68999999999999999999999999999999999999999999999887 4999999999998
Q ss_pred cccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHH
Q 004242 197 KGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAI 276 (766)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai 276 (766)
.++..... +..+|+|++||||||||||||+.+++.+.+|++.|.++||||+|+|++||+|++.+|..+++++||
T Consensus 76 ~~~~~~~~------~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~ 149 (621)
T 3vta_A 76 IGRPISPG------DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAY 149 (621)
T ss_dssp CSSSCCTT------CCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHH
T ss_pred cCCccCCC------CCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHH
Confidence 76544332 334789999999999999999999988899998999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEeccCCCCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEE
Q 004242 277 DKAVADGVDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVK 355 (766)
Q Consensus 277 ~~a~~~g~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~ 355 (766)
+||+++|+||||||||+... .+..+++++++++|.++||++|+||||+|+...++++.+||+++|++++.++.|...+.
T Consensus 150 ~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~ 229 (621)
T 3vta_A 150 DDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229 (621)
T ss_dssp HHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEE
T ss_pred HHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEE
Confidence 99999999999999998755 46678899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEeeeeeccCCCCceeeeEEccCCC-----CCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceE
Q 004242 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAG-----VSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAG 430 (766)
Q Consensus 356 ~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~-----~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g 430 (766)
++++..+.+.++.... ...+++++..... ......|....+++.+++|||++|.++ +..+.......|+.+
T Consensus 230 ~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~g 305 (621)
T 3vta_A 230 IGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS---FGPHEFFKSLDGAAG 305 (621)
T ss_dssp ETTSCEEEEBCCCCSC-CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC---CCHHHHHHHHTTCSE
T ss_pred eccCceeeeeecccCC-CcccccccccccccccccccccccccccccccccccceEEEEecC---CChhHHhhhhcceeE
Confidence 9999999988876543 5567777765542 223567888899999999999999865 445667778889999
Q ss_pred EEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCc
Q 004242 431 MLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPD 510 (766)
Q Consensus 431 ~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 510 (766)
+++.++... ..+.+.+|...++..++..++.|+.....+...+....+......+.++.||||||+...++++|||
T Consensus 306 vi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPD 381 (621)
T 3vta_A 306 VLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPD 381 (621)
T ss_dssp EEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCC
T ss_pred EEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccc
Confidence 999987654 3456789999999999999999999999888888666555557789999999999998777999999
Q ss_pred EEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 004242 511 VTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590 (766)
Q Consensus 511 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~ 590 (766)
|+|||++|+|+++....... +.+...|..|||||||||||||+||||||+||+|+|++||++||+||+++++.+
T Consensus 382 I~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--- 455 (621)
T 3vta_A 382 ISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--- 455 (621)
T ss_dssp EEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT---
T ss_pred cccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC---
Confidence 99999999999986543222 234458999999999999999999999999999999999999999999876543
Q ss_pred ccCCCCCCCCCCCcccccCCccCccccCCCCceecCCchhhHHHhhhcCCCcccceeecccccccCCCCCCCCCCCCCCc
Q 004242 591 ADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPS 670 (766)
Q Consensus 591 ~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps 670 (766)
.+..+++||+|+|||.+|++||||||+..+||+.|||+++|+.++++.+++....|.........+|||||
T Consensus 456 ---------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS 526 (621)
T 3vta_A 456 ---------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPS 526 (621)
T ss_dssp ---------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSS
T ss_pred ---------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCccccccccc
Confidence 46788999999999999999999999999999999999999999999999998899876655678999999
Q ss_pred eeeeccCCccceeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCC-eEEEEE
Q 004242 671 FAVNFKGNVKNMSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNE-SFGSLT 749 (766)
Q Consensus 671 ~~~~~~~~~~~~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~-~~G~~~ 749 (766)
|++.+..+ ...+++|+|||||||....||+++++.|+|++|+|+|.+|+|++.+|+++|+|||+.. .++. +||+|+
T Consensus 527 ~~v~~~~~-~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~ 603 (621)
T 3vta_A 527 FGLSVSPS-QTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLV 603 (621)
T ss_dssp EEEECCSS-CCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEE
T ss_pred EEEEccCC-CceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEE
Confidence 99876543 2368999999999999999999999999999999999999999989999999999864 4566 999999
Q ss_pred EECCceeEEeEEEEEe
Q 004242 750 WVSGKYAVKSPIAVTW 765 (766)
Q Consensus 750 ~~~~~~~v~~p~~v~~ 765 (766)
|+|++|.||+||+|+.
T Consensus 604 w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 604 WSDGVHYVRSPITITS 619 (621)
T ss_dssp EECSSCCCEEEEEEEC
T ss_pred EEcCCEEEEeCEEEEE
Confidence 9999999999999975
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-82 Score=766.83 Aligned_cols=532 Identities=23% Similarity=0.281 Sum_probs=421.2
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCc----------ccCCCccccccccccccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKF----------SQSNCNNKLIGARAFFKG 198 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~----------~~~~~n~kiig~~~~~~g 198 (766)
+..+|.++++|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|..+
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 356899999999999999999999999999853 5677777643332 234799999999988653
Q ss_pred cccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHH
Q 004242 199 YESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAI 276 (766)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai 276 (766)
. ...|..||||||||||||+.+.+.+. .+.+.||||+|+|++||+|++.+ +..+++++||
T Consensus 80 ~--------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai 141 (926)
T 1xf1_A 80 G--------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 141 (926)
T ss_dssp S--------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred C--------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHH
Confidence 1 12388999999999999987554322 24568999999999999998776 5667899999
Q ss_pred HHHHhCCCcEEEeccCCCCC--CCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-------------CCc--CCCCCceE
Q 004242 277 DKAVADGVDVLSLSLGGSSR--PYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-------------STV--DNTAPWIM 339 (766)
Q Consensus 277 ~~a~~~g~dVIn~SlG~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~~~--~~~~p~~i 339 (766)
+||+++|+||||||||.... ....+.+..++++|.++||+||+||||+|+.. .++ +..+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceE
Confidence 99999999999999998643 34567788899999999999999999999632 122 33589999
Q ss_pred EEecccCCcceeEEEEe-CCCceEeeeeeccC---CCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCc
Q 004242 340 TVAASYTDRSFPAIVKL-GNGHSFEGSSLYSG---KGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS 415 (766)
Q Consensus 340 tVga~~~~~~~~~~~~~-~~g~~~~g~~~~~~---~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~ 415 (766)
+|||++.++.+...+.+ +++....+.+++.. .....+|+++.+. .|.+..+ .+++||||+|+|+.|.
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------g~~~~~~--~~v~Gkivl~~rg~~~ 292 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------GTKEDDF--KDVKGKIALIERGDID 292 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------SCSTTTT--TTCTTSEEEEECCSSC
T ss_pred EEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------CCCccch--hhcCCeEEEEECCCCC
Confidence 99999999999888887 55554444444321 1267899999764 3765555 6899999999999999
Q ss_pred hhhhhHHHHhcCceEEEEecCCCCcccc-cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeE--ec-CCCCcc
Q 004242 416 RTGKGEQVKLAGGAGMLLLNSDKEGEEL-IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTV--FG-NPAPVI 491 (766)
Q Consensus 416 ~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~-~~~~~~ 491 (766)
+.+|..+++++|+.|+|++++...+... ......+|+.+++..+|+.|+. . +..++.+..+. .. ...+.+
T Consensus 293 ~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~--~~~ti~~~~~~~~~~~~~~~~~ 366 (926)
T 1xf1_A 293 FKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----N--PQKTITFNATPKVLPTASGTKL 366 (926)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----C--SSCEEEECSSCEEEECSSCSBC
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----C--CceEEEecccceecccCCccee
Confidence 9999999999999999999987553322 2346789999999999988773 3 44556665543 44 567899
Q ss_pred ccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHH----hhCCCC
Q 004242 492 ASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLK----SVHEDW 567 (766)
Q Consensus 492 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~~ 567 (766)
+.||||||+.+ +++||||+|||++|++++++. .|..+||||||||||||+||||+ +.||+|
T Consensus 367 a~FSSrGp~~~--~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~ 431 (926)
T 1xf1_A 367 SRFSSWGLTAD--GNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDM 431 (926)
T ss_dssp CTTSCCCBCTT--SCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ccccCCCCCCC--CccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999975 999999999999999999764 89999999999999999999995 569999
Q ss_pred CHHH----HHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCCCceecCCchhhHHHhhhcCCCcc
Q 004242 568 STAA----IKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSL 643 (766)
Q Consensus 568 s~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~lc~~~~~~~ 643 (766)
+|+| ||++||+||++++..+ .. ..+++++||+|+||+.+|++|.+ |||..++...
T Consensus 432 sp~~~~~~Iks~L~~TA~~~~~~~-------~~---~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~ 490 (926)
T 1xf1_A 432 TPSERLDLAKKVLMSSATALYDED-------EK---AYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS 490 (926)
T ss_dssp HHHHHHHHHHHHHHHHSBCCEEGG-------GT---EECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS
T ss_pred CHHHHHHHHHHHHHhcCCCcccCC-------CC---ccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc
Confidence 9997 9999999999875421 11 35678999999999999999854 6787665432
Q ss_pred cceeecccccccCCCCCCCCCCCCCCceeeeccCCccceeEEEEEEEEecCCC--CeEEEEEEeC--CCceEEEEeCCeE
Q 004242 644 QLALFAGGNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMSLEYERSVTNVGTS--YCTYAVKVEE--PNGVLVTITPPIL 719 (766)
Q Consensus 644 ~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~~rtvtn~g~~--~~ty~~~v~~--p~g~~v~v~p~~~ 719 (766)
+|.+..+. .+.+++|||||+|+. ..+|++++.. |.+..++|.|..|
T Consensus 491 --------------------------~i~l~~~~----~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l 540 (926)
T 1xf1_A 491 --------------------------KVHLNNVS----DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVL 540 (926)
T ss_dssp --------------------------CEEEEEEC----SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred --------------------------eeeccccC----ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEecccee
Confidence 22222222 378899999999985 4678888764 7788899988776
Q ss_pred EEeec-------ceEEEEEEEEEEec--------CCCCC-eEEEEEEE--CCcee-EEeEEEEEe
Q 004242 720 SFQKI-------GEILSYKVTFVSLR--------GASNE-SFGSLTWV--SGKYA-VKSPIAVTW 765 (766)
Q Consensus 720 ~~~~~-------~~~~~~~vt~~~~~--------~~~~~-~~G~~~~~--~~~~~-v~~p~~v~~ 765 (766)
.|... ||+++|+|||++.. .+++. +||+|+|+ ++.|. ||+||++..
T Consensus 541 ~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 541 YETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 55543 99999999999751 34566 89999999 46565 999999863
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-61 Score=552.13 Aligned_cols=340 Identities=33% Similarity=0.478 Sum_probs=275.7
Q ss_pred CCcEEEEecceeeEEEEEeCHHHHhhh-----------ccCCCeEEEEcccccccccCCC--CcccCCccCCCccccCCC
Q 004242 72 PPQILYAYENAISGFSAKLSTKQLKSL-----------ETVDGFLSATPDELLTLHTTYS--PHFLGLESGIGLWDATNL 138 (766)
Q Consensus 72 ~~~~~~~y~~~~~g~s~~l~~~~~~~L-----------~~~p~V~~v~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~ 138 (766)
+.+++++|+ .|+||+++++++++++| +++|+|++|++++.+++..... ...+.......+|..+++
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 468899997 79999999999999999 8899999999999887753221 011222234678999999
Q ss_pred CCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCC
Q 004242 139 AKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDA 218 (766)
Q Consensus 139 G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~ 218 (766)
|+||+|||||||||++||+|.++ +++.++|..+. ..+.|+
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~~---------------------------i~~~~d~~~~~-------------~~~~D~ 177 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQGK---------------------------VIGWVDFVNGK-------------TTPYDD 177 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTTT---------------------------EEEEEETTTCC-------------SSCCBS
T ss_pred CCCcEEEEEecCCCCCChHHhCC---------------------------EeeeEECCCCC-------------CCCCCC
Confidence 99999999999999999999643 44445554321 146789
Q ss_pred CCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC----CCcEEEeccCC
Q 004242 219 QGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD----GVDVLSLSLGG 293 (766)
Q Consensus 219 ~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 293 (766)
.||||||||||||+..+. .|.+.||||+|+|+++|++++.+ +..+++++||+||+++ |++|||||||.
T Consensus 178 ~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~ 250 (539)
T 3afg_A 178 NGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGS 250 (539)
T ss_dssp SSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCC
T ss_pred CCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCC
Confidence 999999999999985332 23458999999999999998876 7889999999999986 89999999998
Q ss_pred CCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCC
Q 004242 294 SSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGK 371 (766)
Q Consensus 294 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 371 (766)
.......+.+..++.++.++|++||+||||+|+... ..+...+++|+|||++.
T Consensus 251 ~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~------------------------- 305 (539)
T 3afg_A 251 SQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK------------------------- 305 (539)
T ss_dssp CSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT-------------------------
T ss_pred CCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC-------------------------
Confidence 765555678888999999999999999999998654 45678899999999641
Q ss_pred CCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCcccc
Q 004242 372 GSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLP 451 (766)
Q Consensus 372 ~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 451 (766)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCC
Q 004242 452 AATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSML 531 (766)
Q Consensus 452 ~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 531 (766)
.+.++.||||||+.+ +++||||+|||++|+++++......
T Consensus 306 ------------------------------------~~~~a~fSs~Gp~~~--~~~kpdi~APG~~I~s~~~~~~~~~-- 345 (539)
T 3afg_A 306 ------------------------------------YDVITDFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMG-- 345 (539)
T ss_dssp ------------------------------------TSCBCSSSCCCCCTT--CBCCCSEEEECSSEEEECCTTCCCS--
T ss_pred ------------------------------------CcccccccCCCCCCC--CCCcccEecCcCCEEeeccCCCCCC--
Confidence 126899999999986 8999999999999999986532110
Q ss_pred CCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCc
Q 004242 532 KSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGH 611 (766)
Q Consensus 532 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 611 (766)
+.....|..++|||||||||||++|||+|++|+|++++||++|++||+++... ..+++.||+|+
T Consensus 346 --~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~--------------~~~~~~~G~G~ 409 (539)
T 3afg_A 346 --QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPD--------------EIADIAYGAGR 409 (539)
T ss_dssp --EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGG--------------GCSBTTTBTCB
T ss_pred --CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC--------------CCCccCccCCc
Confidence 11122699999999999999999999999999999999999999999976421 13456899999
Q ss_pred cCccccCCC
Q 004242 612 VDPESASDP 620 (766)
Q Consensus 612 id~~~Al~~ 620 (766)
||+.+|++.
T Consensus 410 vn~~~Al~~ 418 (539)
T 3afg_A 410 VNAYKAAYY 418 (539)
T ss_dssp CCHHHHHTG
T ss_pred cCHHHHhhh
Confidence 999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=512.15 Aligned_cols=322 Identities=27% Similarity=0.399 Sum_probs=263.7
Q ss_pred CCCcEEEEecceeeEEEEEeCHHHHhhhccCCCeEEEEcccccccccCCC-----------CcccCCcc--CCCccccCC
Q 004242 71 TPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYS-----------PHFLGLES--GIGLWDATN 137 (766)
Q Consensus 71 ~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~~~~~~s-----------~~~~g~~~--~~~~~~~~~ 137 (766)
.+.+++++|. .+++|+++++++++++|+++|+|++|++++.++++.... ...|++.. ...+|..+
T Consensus 22 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~- 99 (395)
T 2z2z_A 22 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT- 99 (395)
T ss_dssp TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-
T ss_pred cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-
Confidence 4578999998 599999999999999999999999999999887643211 12355443 35789988
Q ss_pred CCCC--cEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCC
Q 004242 138 LAKD--VIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSP 215 (766)
Q Consensus 138 ~G~g--v~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 215 (766)
+|+| |+|||||||||++||+|.++ +...++|..+... . +..++
T Consensus 100 ~G~g~~v~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~--~------~~~~~ 144 (395)
T 2z2z_A 100 DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS--T------KLRDC 144 (395)
T ss_dssp SSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB--C------CHHHH
T ss_pred CCCCCcEEEEEEcCCCCCCChhHhhc---------------------------cccCccccCCccc--C------CCCCC
Confidence 9999 99999999999999999753 2222333322100 0 00124
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC------------
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD------------ 282 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------------ 282 (766)
.|..||||||||||+|.. ++ .| +.||||+|+|+.+|++++.+ +..+++++||+||+++
T Consensus 145 ~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~ 215 (395)
T 2z2z_A 145 ADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 215 (395)
T ss_dssp BCSSSHHHHHHHHHHCCC-SS---SS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSC
T ss_pred CCCCCCHHHHHHHHHeec-CC---Cc-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCcccccccccccc
Confidence 678999999999999973 21 12 37999999999999998877 7889999999999988
Q ss_pred --------CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEE
Q 004242 283 --------GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIV 354 (766)
Q Consensus 283 --------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~ 354 (766)
+++|||||||.... ...+..++.++.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 216 ~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-------- 284 (395)
T 2z2z_A 216 IAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS-------- 284 (395)
T ss_dssp CTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT--------
T ss_pred ccccccCCCCeEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC--------
Confidence 99999999998643 35667777789999999999999999887788889999999999642
Q ss_pred EeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEe
Q 004242 355 KLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 355 ~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeC
Q 004242 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAP 514 (766)
Q Consensus 435 ~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 514 (766)
.+.++.||++|| +|+||
T Consensus 285 -----------------------------------------------------~~~~a~fS~~G~----------~v~AP 301 (395)
T 2z2z_A 285 -----------------------------------------------------NDNIASFSNRQP----------EVSAP 301 (395)
T ss_dssp -----------------------------------------------------TSCBCTTSCSSC----------SEEEE
T ss_pred -----------------------------------------------------CCCCCcccCCCC----------CEEeC
Confidence 127889999998 67999
Q ss_pred CCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCC-------------CCCHHHHHHHHHhccc
Q 004242 515 GVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHE-------------DWSTAAIKSALMTTAY 581 (766)
Q Consensus 515 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-------------~~s~~~ik~~L~~TA~ 581 (766)
|++|+++++.+ .|..++|||||||||||++|||+|++| .|++.+||++|++||+
T Consensus 302 G~~i~s~~~~~-------------~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~ 368 (395)
T 2z2z_A 302 GVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITAD 368 (395)
T ss_dssp CSSEEEEETTT-------------EEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSB
T ss_pred CCCeeeecCCC-------------ceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhcc
Confidence 99999999764 899999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCC
Q 004242 582 TLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDP 620 (766)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 620 (766)
++.. +..+..||||+||+.+|++.
T Consensus 369 ~~~~---------------~g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 369 DLGP---------------TGWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp CCSS---------------SSSBTTTBTCBCCHHHHHHH
T ss_pred ccCC---------------CCCCCCccCceeCHHHHHHH
Confidence 7632 23456899999999999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-57 Score=511.25 Aligned_cols=334 Identities=19% Similarity=0.207 Sum_probs=266.7
Q ss_pred CCcEEEEecceeeEEEEEeCHHHHhhhcc-CCCeEEEEcccccccccCCCC----------cccCCccC---CCccccCC
Q 004242 72 PPQILYAYENAISGFSAKLSTKQLKSLET-VDGFLSATPDELLTLHTTYSP----------HFLGLESG---IGLWDATN 137 (766)
Q Consensus 72 ~~~~~~~y~~~~~g~s~~l~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~s~----------~~~g~~~~---~~~~~~~~ 137 (766)
+.++++.|. .|++|+++++++++++|++ +|+|++|++++.+++...... ..|++..+ ..+|..++
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 467889996 5999999999999999999 999999999998877543321 23444433 36899999
Q ss_pred CCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCC
Q 004242 138 LAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRD 217 (766)
Q Consensus 138 ~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d 217 (766)
+|+||+|||||||||++||+|.++. |.+ .+.|..+..+.....+...+...+.|
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~-------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~d 197 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNF-------STD-------------------SKNLVPLNGFRGTEPEETGDVHDVND 197 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTB-------CTT-------------------CEECCCTTCGGGCCTTCCCCTTCCCC
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCc-------ccC-------------------CcccccCCCccCCCcccCCCCCCCcC
Confidence 9999999999999999999997641 111 11111111111111111122335788
Q ss_pred CCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCC-
Q 004242 218 AQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSR- 296 (766)
Q Consensus 218 ~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~- 296 (766)
..||||||||||+|++. +.||||+|+|+.+|++++..+..+++++||+||++++++|||||||....
T Consensus 198 ~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~ 265 (471)
T 3t41_A 198 RKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIIL 265 (471)
T ss_dssp SSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEE
T ss_pred CCCccchhhheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCC
Confidence 99999999999998631 47999999999999998877899999999999999999999999997321
Q ss_pred ------------CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC------------------CcCCCCCceEEEecccC
Q 004242 297 ------------PYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS------------------TVDNTAPWIMTVAASYT 346 (766)
Q Consensus 297 ------------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~------------------~~~~~~p~~itVga~~~ 346 (766)
....+.+..++..+.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~ 345 (471)
T 3t41_A 266 DKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ 345 (471)
T ss_dssp CTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC
Confidence 022356778888899999999999999997654 26678899999999642
Q ss_pred CcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhc
Q 004242 347 DRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLA 426 (766)
Q Consensus 347 ~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~ 426 (766)
+
T Consensus 346 ~------------------------------------------------------------------------------- 346 (471)
T 3t41_A 346 K------------------------------------------------------------------------------- 346 (471)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCc
Q 004242 427 GGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDV 506 (766)
Q Consensus 427 Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 506 (766)
+.+++||++||+.
T Consensus 347 --------------------------------------------------------------~~~a~fS~~G~~~----- 359 (471)
T 3t41_A 347 --------------------------------------------------------------SNLSEFSNFGMNY----- 359 (471)
T ss_dssp --------------------------------------------------------------SSBCTTCCBCTTT-----
T ss_pred --------------------------------------------------------------CCCCCccCCCCCC-----
Confidence 2688999999974
Q ss_pred ccCcEEeCCCc----------------------EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC
Q 004242 507 IKPDVTAPGVN----------------------ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH 564 (766)
Q Consensus 507 lKPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 564 (766)
|||+|||++ |+++++.. .|..++|||||||||||++|||+|++
T Consensus 360 --~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGTS~AaP~VAG~aAll~~~~ 424 (471)
T 3t41_A 360 --TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG-------------RYIYQAGTALATPKVSGALALIIDKY 424 (471)
T ss_dssp --CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHH
T ss_pred --CeEEecCCCcccccccccccccccccccCceeEecCCCC-------------CEEeecchHHHHHHHHHHHHHHHHhc
Confidence 499999987 88888654 79999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCCC
Q 004242 565 E-DWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPG 621 (766)
Q Consensus 565 P-~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 621 (766)
| .++|++||++|++||.+.. ..++..||||+||+.+|++..
T Consensus 425 p~~~~~~~v~~~L~~tA~~~~----------------~~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 425 HLEKHPDKAIELLYQHGTSKN----------------NKPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp TCTTCHHHHHHHHHHHSBCCS----------------CCCHHHHTTCBBCHHHHTTTT
T ss_pred cCCCCHHHHHHHHHHhCCCCC----------------CCCcCccccChhCHHHHHHHH
Confidence 9 8999999999999999652 246678999999999999843
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=523.79 Aligned_cols=333 Identities=22% Similarity=0.241 Sum_probs=57.1
Q ss_pred ceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccCCCe
Q 004242 25 TTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDGF 104 (766)
Q Consensus 25 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V 104 (766)
++|||+||++..... ...+.+++...+.+. ....+++++|++.|+||+++++++++++|+++|+|
T Consensus 76 g~YIV~lk~~~~~~~--~~~~~~~l~a~~~~~-------------g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V 140 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQ--SERTARRLQAQAARR-------------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHV 140 (692)
T ss_dssp EEEEEEECTTCCHHH--HHHHHHHHHHHHHHT-------------TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTE
T ss_pred CcEEEEECCCCCHHH--HHHHHHHHHHHHhhc-------------ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCc
Confidence 389999998775433 222223332222111 13568999999999999999999999999999999
Q ss_pred EEEEcccccccccCCCCcccCCccC------CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCC
Q 004242 105 LSATPDELLTLHTTYSPHFLGLESG------IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGT 178 (766)
Q Consensus 105 ~~v~~~~~~~~~~~~s~~~~g~~~~------~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~ 178 (766)
++|+|++.++.+. ..|++.++ ...|..+.+|+||+|||||||||++||+|.++.. |.
T Consensus 141 ~~Vepd~~v~~~~----~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~------- 203 (692)
T 2p4e_P 141 DYIEEDSSVFAQS----IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT------- 203 (692)
T ss_dssp EEEEEEEEEEEC--------------------------------------------------------------------
T ss_pred eEEEeccccccCC----CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------
Confidence 9999999876521 23555543 2368888999999999999999999999986510 10
Q ss_pred CcccCCCccccccccccccccccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEE
Q 004242 179 KFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAA 258 (766)
Q Consensus 179 ~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~ 258 (766)
+| .+..+ .++. .....+.|..||||||||||+|+. .||||+|+|++
T Consensus 204 ~~-------------~~~~d---~dg~----~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~ 249 (692)
T 2p4e_P 204 DF-------------ENVPE---EDGT----RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRS 249 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-------------ccccC---CCCC----cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEE
Confidence 00 00000 0000 001246789999999999999873 59999999999
Q ss_pred eeeecCCC-CCHHHHHHHHHHHHhC------CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-
Q 004242 259 YKACWSLG-CSSSDILAAIDKAVAD------GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST- 330 (766)
Q Consensus 259 ~kv~~~~g-~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~- 330 (766)
+||+++.| ++.+++++||+|++++ +++|||||||+.. .+.+..++.++.++|++||+||||+|.....
T Consensus 250 vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~ 325 (692)
T 2p4e_P 250 LRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLY 325 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCcc
Confidence 99998876 7888999999999986 8999999999753 3445566668899999999999999987543
Q ss_pred cCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEe
Q 004242 331 VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQ 410 (766)
Q Consensus 331 ~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~ 410 (766)
.++..|++|+|||++.+..
T Consensus 326 sPA~~~~vItVGA~d~~~~------------------------------------------------------------- 344 (692)
T 2p4e_P 326 SPASAPEVITVGATNAQDQ------------------------------------------------------------- 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCCCEEEEEEEcCCCC-------------------------------------------------------------
Confidence 4778899999999753220
Q ss_pred cCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCc
Q 004242 411 RGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPV 490 (766)
Q Consensus 411 ~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 490 (766)
....
T Consensus 345 ----------------------------------------------------------------------------~a~~ 348 (692)
T 2p4e_P 345 ----------------------------------------------------------------------------PVTL 348 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0001
Q ss_pred cccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHH
Q 004242 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTA 570 (766)
Q Consensus 491 ~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~ 570 (766)
-+.||+|||. |||+|||++|+++++... ..|..++|||||||||||++|||++++|+|+|+
T Consensus 349 ss~fSn~G~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~ 409 (692)
T 2p4e_P 349 GTLGTNFGRC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 409 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 1238999984 599999999999987531 178999999999999999999999999999999
Q ss_pred HHHHHHHhccccC
Q 004242 571 AIKSALMTTAYTL 583 (766)
Q Consensus 571 ~ik~~L~~TA~~~ 583 (766)
+||++|++||.+.
T Consensus 410 qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 410 ELRQRLIHFSAKD 422 (692)
T ss_dssp -------------
T ss_pred HHHHHHHHhcccc
Confidence 9999999999864
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=491.91 Aligned_cols=381 Identities=26% Similarity=0.335 Sum_probs=276.3
Q ss_pred cCCcc--CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLES--GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|+++. ...+|..+ |+||+|||||||||++||+|.++ .|. + +++...
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~~-------------------~-~~~~~~--- 53 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NVT-------------------G-TNNSGT--- 53 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EEE-------------------E-CCCTTS---
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------ccc-------------------C-cccCCC---
Confidence 44443 35688865 77999999999999999999754 111 1 111100
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCc--eEEEeeeecCCC-CCHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTS--RIAAYKACWSLG-CSSSDILAAIDK 278 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~ 278 (766)
.++..+.|..||||||||||+|..++ .| +.||||+| +|+.+|+++..+ +..+++++||+|
T Consensus 54 --------~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~ 116 (441)
T 1y9z_A 54 --------GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDT 116 (441)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 01124678899999999999998522 12 37999995 999999998877 788899999999
Q ss_pred HHhC-CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeE-----
Q 004242 279 AVAD-GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPA----- 352 (766)
Q Consensus 279 a~~~-g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~----- 352 (766)
|+++ |++|||||||.... ...+..++.+|.++|++||+||||+|.....++...+++|+|||++.+.....
T Consensus 117 a~~~~g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g 193 (441)
T 1y9z_A 117 CVNSGGANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYT 193 (441)
T ss_dssp HHHTTCCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCC
T ss_pred HHHhcCCcEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCC
Confidence 9999 99999999998643 24566777789999999999999999888888889999999999887643211
Q ss_pred --------------EEEeCCCc----eEeeeeeccCCC---Cceee--eEEccCC----CCCCCccccCC--CCCCCccc
Q 004242 353 --------------IVKLGNGH----SFEGSSLYSGKG---SKQLP--LVFGKTA----GVSGAEYCING--SLNRKLVK 403 (766)
Q Consensus 353 --------------~~~~~~g~----~~~g~~~~~~~~---~~~~~--lv~~~~~----~~~~~~~c~~~--~~~~~~~~ 403 (766)
.+..+++. .+.|.+.+.... ...++ +.|.... .......|... .++..+++
T Consensus 194 ~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~ 273 (441)
T 1y9z_A 194 DQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMA 273 (441)
T ss_dssp TTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCT
T ss_pred CceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCcc
Confidence 11111111 222333322110 00000 1111110 01123457654 46778999
Q ss_pred ceEEEEecCCC-----chhhhhHHHHhcCceEEEEecCCCCccc------ccccCccccEEEEcHhhHHHHHHHHhcCCC
Q 004242 404 GKIVICQRGLN-----SRTGKGEQVKLAGGAGMLLLNSDKEGEE------LIADAHVLPAATLGASAGKAVKKYVNSTKR 472 (766)
Q Consensus 404 gkiv~~~~g~~-----~~~~~~~~~~~~Ga~g~i~~~~~~~~~~------~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~ 472 (766)
|||++|+|+.+ .+.+|..+++++|+.|+|++++...... .......+|.+.++..+|+.|+.|+.+.
T Consensus 274 gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~-- 351 (441)
T 1y9z_A 274 NKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS-- 351 (441)
T ss_dssp TEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE--
T ss_pred ccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC--
Confidence 99999999876 7788999999999999999988653111 1233467999999999999999886421
Q ss_pred CeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhh
Q 004242 473 PTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPH 552 (766)
Q Consensus 473 ~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 552 (766)
++ + ++.. ...|..++||||||||
T Consensus 352 --~t----------------------------------~--------~~~~-------------~~~y~~~sGTSmAaP~ 374 (441)
T 1y9z_A 352 --TT----------------------------------V--------SNQG-------------NQDYEYYNGTSMATPH 374 (441)
T ss_dssp --EE----------------------------------E--------EEEE-------------EESEEEECSHHHHHHH
T ss_pred --cc----------------------------------c--------cccc-------------CCCceeecccccCCcc
Confidence 11 1 1111 1279999999999999
Q ss_pred hhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCCCceecCCchhhH
Q 004242 553 VSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDYL 632 (766)
Q Consensus 553 VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~ 632 (766)
|||++|||+|+||+|+|++||++||+||++++.. ..+.+||+|+||+.+|+ ||+
T Consensus 375 VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~---------------g~~~~~G~G~vn~~~A~-----------~~~ 428 (441)
T 1y9z_A 375 VSGVATLVWSYHPECSASQVRAALNATADDLSVA---------------GRDNQTGYGMINAVAAK-----------AYL 428 (441)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSS---------------SCBTTTBTCBCCHHHHH-----------HHH
T ss_pred cchHHHHHHHHCCCCCHHHHHHHHHhhchhhccC---------------CCcccccccccCHHHHH-----------HHH
Confidence 9999999999999999999999999999987532 23568999999999996 599
Q ss_pred HHhhhcCCC
Q 004242 633 DYLCSLNYT 641 (766)
Q Consensus 633 ~~lc~~~~~ 641 (766)
.|||.++++
T Consensus 429 ~~lc~~~~~ 437 (441)
T 1y9z_A 429 DESCTGPTD 437 (441)
T ss_dssp HHCTTCC--
T ss_pred HhhhcCCCC
Confidence 999998764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-54 Score=498.33 Aligned_cols=373 Identities=23% Similarity=0.258 Sum_probs=272.3
Q ss_pred CCCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCH----HHHhh
Q 004242 22 GKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLST----KQLKS 97 (766)
Q Consensus 22 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~----~~~~~ 97 (766)
..+++|||+||+... .+++++. .+.++.+++. .+++++++++. +.+++
T Consensus 29 ~~~~~~IV~~k~~~~------------~~~~~~~---------------~g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~ 80 (671)
T 1r6v_A 29 YTEGKILVGYNDRSE------------VDKIVKA---------------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDK 80 (671)
T ss_dssp BCTTEEEEEESSHHH------------HHHHHHH---------------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHH
T ss_pred cCCccEEEEECCCcC------------HHHHHHh---------------cCCeEEEEcC-CCcEEEEEeCCcCHHHHHHH
Confidence 367999999997321 1222322 2356777886 68999999864 33566
Q ss_pred hc--cCCCeEEEEcccccccccC---C------------------------CCcccCCccC--CCc-cccCCCCCCcEEE
Q 004242 98 LE--TVDGFLSATPDELLTLHTT---Y------------------------SPHFLGLESG--IGL-WDATNLAKDVIVG 145 (766)
Q Consensus 98 L~--~~p~V~~v~~~~~~~~~~~---~------------------------s~~~~g~~~~--~~~-~~~~~~G~gv~Va 145 (766)
|+ ++|+|++|||+..+++... . ....|++..+ ..+ |+. ++|+||+||
T Consensus 81 l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VA 159 (671)
T 1r6v_A 81 IKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVA 159 (671)
T ss_dssp HTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEE
T ss_pred HHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEE
Confidence 65 4899999999977654310 0 0123444332 455 888 899999999
Q ss_pred EEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCCchhH
Q 004242 146 VIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHT 225 (766)
Q Consensus 146 VIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThV 225 (766)
|||||||++||+|.++- +.++.+..+ ... ....+..|..||||||
T Consensus 160 VIDTGVd~~HpdL~~~~---------------------------~~g~~~~~~------~~~--p~~~d~~d~~gHGThV 204 (671)
T 1r6v_A 160 VVDTGVDGTHPDLEGQV---------------------------IAGYRPAFD------EEL--PAGTDSSYGGSAGTHV 204 (671)
T ss_dssp EEESCCBTTSGGGTTTB---------------------------CCEEEGGGT------EEE--CTTCBCCTTCSHHHHH
T ss_pred EEeCCCCCCCccccccE---------------------------EecccccCC------CcC--CCCCCCccCCCcchhh
Confidence 99999999999997641 111111111 000 0011345678999999
Q ss_pred HHhhccccccccccccccCCcccccccCceEEEeeeecC------CC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 004242 226 ASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS------LG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPY 298 (766)
Q Consensus 226 Agi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 298 (766)
||||||.. ++ .| +.||||+|+|+++|+++. .+ .....+++||+||+++|++|||||||...
T Consensus 205 AGiIAa~~-ng---~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~--- 272 (671)
T 1r6v_A 205 AGTIAAKK-DG---KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG--- 272 (671)
T ss_dssp HHHHHCCC-SS---SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---
T ss_pred hhhhhccC-CC---Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---
Confidence 99999973 21 12 379999999999999986 23 44567899999999999999999999853
Q ss_pred cccHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceee
Q 004242 299 YRDTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLP 377 (766)
Q Consensus 299 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 377 (766)
....+..++..|.++|+++|+||||+|... ..++...|++|+|||++.+..
T Consensus 273 ~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~---------------------------- 324 (671)
T 1r6v_A 273 YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG---------------------------- 324 (671)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT----------------------------
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC----------------------------
Confidence 345677888899999999999999999875 567788899999999642110
Q ss_pred eEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcH
Q 004242 378 LVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGA 457 (766)
Q Consensus 378 lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~ 457 (766)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCC-----CC
Q 004242 458 SAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSM-----LK 532 (766)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~ 532 (766)
...++.|||+||.. ||+|||++|+++++....... ..
T Consensus 325 ------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~ 366 (671)
T 1r6v_A 325 ------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENV 366 (671)
T ss_dssp ------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTC
T ss_pred ------------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccc
Confidence 01478999999975 999999999999875421100 00
Q ss_pred CCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCcc
Q 004242 533 SDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHV 612 (766)
Q Consensus 533 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~i 612 (766)
.......|..++|||||||||||++|||+|++|+|+|.+||++|++||.++.. +..+..||||+|
T Consensus 367 ~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~---------------~g~d~~~G~G~v 431 (671)
T 1r6v_A 367 PATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG---------------NGWDHDTGYGLV 431 (671)
T ss_dssp CCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS---------------SSCBTTTBTCBC
T ss_pred cccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCC---------------CCCCCCccccee
Confidence 01123379999999999999999999999999999999999999999997642 234568999999
Q ss_pred CccccCCCCceecCCchhh
Q 004242 613 DPESASDPGLIYDIATEDY 631 (766)
Q Consensus 613 d~~~Al~~~lv~d~~~~d~ 631 (766)
|+.+|++..|..+....||
T Consensus 432 na~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 432 KLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp CHHHHHHCCCCSSSEEEEE
T ss_pred CHHHHhhhhcCCCCCccce
Confidence 9999999877766544333
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=464.83 Aligned_cols=306 Identities=21% Similarity=0.214 Sum_probs=199.9
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|.++..|++|+|||||||||++||+|++..+.+....|+..++........ .+..+.. . ...++..........
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~ 97 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRD-Q-GLKGKEKEEALEAVI 97 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHH-H-TCCSHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccC-c-ccccccccccccccc
Confidence 568999999999999999999999999999887777777887765532211000 0000000 0 000000000000000
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC------CCHHHHHHHHHHHHhCC
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG------CSSSDILAAIDKAVADG 283 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~i~~ai~~a~~~g 283 (766)
.+..++.|.+||||||||||||+.++ .+.||||+|+|+.+|++.... ....++++||+||++.|
T Consensus 98 ~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g 167 (357)
T 4h6x_A 98 PDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELG 167 (357)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcC
Confidence 11123457789999999999997422 237999999999999975421 44567889999999999
Q ss_pred CcEEEeccCCCCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 284 VDVLSLSLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 284 ~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
++|||||||.... ....+.+..++.++.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 168 ~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------- 231 (357)
T 4h6x_A 168 ANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV---------------- 231 (357)
T ss_dssp CSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT----------------
T ss_pred CCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc----------------
Confidence 9999999997654 34556788888899999999999999999888888888999999999642
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
.+.++.|||||+. ..||||+|||++|++++
T Consensus 232 ---------------------------------------------~~~~~~fSn~G~~-----~~~~di~APG~~i~s~~ 261 (357)
T 4h6x_A 232 ---------------------------------------------DGTPCHFSNWGGN-----NTKEGILAPGEEILGAQ 261 (357)
T ss_dssp ---------------------------------------------TSSBCTTCC---C-----TTTTEEEEECSSEEECC
T ss_pred ---------------------------------------------CCcccccccCCCC-----CCccceeecCCCeEecc
Confidence 1278899999974 45899999999999998
Q ss_pred CCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCC
Q 004242 523 PATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV----HEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD 598 (766)
Q Consensus 523 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 598 (766)
+.+. .|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..
T Consensus 262 ~~~~------------~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~------------ 317 (357)
T 4h6x_A 262 PCTE------------EPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE------------ 317 (357)
T ss_dssp TTCS------------CCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------
T ss_pred CCCC------------cccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC------------
Confidence 6541 5778999999999999999999954 56899999999999999976432
Q ss_pred CCCCCcccccCCccCccccCC
Q 004242 599 TPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 599 ~~~~~~~~~G~G~id~~~Al~ 619 (766)
....+.+||+|+||+.+|++
T Consensus 318 -~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 -VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp --------CTTCBCCHHHHHH
T ss_pred -CCCCcccceeEEecHHHHHH
Confidence 23455689999999999986
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=433.78 Aligned_cols=265 Identities=33% Similarity=0.407 Sum_probs=213.4
Q ss_pred ccCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccc
Q 004242 123 FLGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYE 200 (766)
Q Consensus 123 ~~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~ 200 (766)
.|++..+ ..+|+.+..|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 12 ~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~-- 62 (280)
T 1dbi_A 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN-- 62 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT--
T ss_pred CCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCC--
Confidence 3566554 57899988888999999999999999999653 2333333221
Q ss_pred cccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHH
Q 004242 201 SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKA 279 (766)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 279 (766)
+ ..+.|..+|||||||||+|...+... +.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 63 ----~-------~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 123 (280)
T 1dbi_A 63 ----D-------YDPMDLNNHGTHVAGIAAAETNNATG--------IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYA 123 (280)
T ss_dssp ----B-------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred ----C-------CCCCCCCCcHHHHHHHHhCcCCCCCc--------ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHH
Confidence 1 14578899999999999998544322 37999999999999998766 7889999999999
Q ss_pred HhCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCC
Q 004242 280 VADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359 (766)
Q Consensus 280 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g 359 (766)
+++|++|||||||... ..+.+..++.++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 124 ~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T 1dbi_A 124 ADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------
Confidence 9999999999999863 235677778889999999999999999877778888999999999642
Q ss_pred ceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEE
Q 004242 440 GEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL 519 (766)
Q Consensus 440 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 519 (766)
.+.++.||++||.. ||+|||++|+
T Consensus 188 ------------------------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~ 211 (280)
T 1dbi_A 188 ------------------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIV 211 (280)
T ss_dssp ------------------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEE
T ss_pred ------------------------------------------------CCCcCCCCCCCCCc--------eEEEecCCeE
Confidence 12678999999864 9999999999
Q ss_pred eecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCC
Q 004242 520 AAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDT 599 (766)
Q Consensus 520 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 599 (766)
++++.+ .|..++|||||||||||++|||++ |.+++.+||++|++||+++..
T Consensus 212 s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------- 262 (280)
T 1dbi_A 212 STITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------- 262 (280)
T ss_dssp EEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT--------------
T ss_pred eecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC--------------
Confidence 998654 899999999999999999999987 899999999999999997631
Q ss_pred CCCCcccccCCccCccccCC
Q 004242 600 PLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 600 ~~~~~~~~G~G~id~~~Al~ 619 (766)
....||+|+||+.+|++
T Consensus 263 ---~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 ---TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ---BTTTBSSEECCHHHHHT
T ss_pred ---CCCcccCCEECHHHHhc
Confidence 12479999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=434.57 Aligned_cols=262 Identities=33% Similarity=0.453 Sum_probs=217.4
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|++..+ ..+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~--- 53 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAG--- 53 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTT---
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcC-----------------------------CCCccccCC---
Confidence 555443 5789999999999999999999999999931 112223221
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+ ..+.|..||||||||||+|..+ + .| +.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 54 ---~-------~~~~d~~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~ 114 (274)
T 1r0r_E 54 ---E-------AYNTDGNGHGTHVAGTVAALDN-T---TG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp ---C-------CTTCCSSSHHHHHHHHHHCCSS-S---SB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ---C-------CCCCCCCCCHHHHHHHHHccCC-C---Cc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHH
Confidence 1 1246789999999999999731 1 12 37999999999999998776 78889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC----CCcCCCCCceEEEecccCCcceeEEEEe
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI----STVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+++++|||||||.... .+.+..++.++.++|+++|+||||+|... ..++...|++|+||+++.
T Consensus 115 ~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (274)
T 1r0r_E 115 TNGMDVINMSLGGASG---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------- 181 (274)
T ss_dssp HTTCSEEEECEEBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT----------
T ss_pred HcCCCEEEeCCCCCCC---cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC----------
Confidence 9999999999998643 35677788889999999999999999763 355678899999999642
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
.+.++.||++||. |||+|||.
T Consensus 182 ---------------------------------------------------~~~~~~~S~~G~~--------~di~APG~ 202 (274)
T 1r0r_E 182 ---------------------------------------------------NSNRASFSSVGAE--------LEVMAPGA 202 (274)
T ss_dssp ---------------------------------------------------TSCBCTTCCCSTT--------EEEEEECS
T ss_pred ---------------------------------------------------CCCcCccCCCCCC--------ceEEeCCC
Confidence 1267899999985 49999999
Q ss_pred cEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCC
Q 004242 517 NILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGS 596 (766)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~ 596 (766)
+|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+++
T Consensus 203 ~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~------------- 256 (274)
T 1r0r_E 203 GVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------------- 256 (274)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCC-------------
T ss_pred CeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCccc-------------
Confidence 999998754 899999999999999999999999999999999999999999964
Q ss_pred CCCCCCCcccccCCccCccccCC
Q 004242 597 SDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 597 ~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
.++..||+|+||+.+|++
T Consensus 257 -----g~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 257 -----GSSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -----SCHHHHTTCBCCHHHHTC
T ss_pred -----CCCCCcccCccCHHHHhC
Confidence 245689999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=431.71 Aligned_cols=261 Identities=34% Similarity=0.483 Sum_probs=218.8
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|++..+ ..+|..+++|+||+|+|||||| .+||+|+. ...++|..+
T Consensus 6 W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~-----------------------------~~~~~~~~~--- 52 (269)
T 1gci_A 6 WGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLNI-----------------------------RGGASFVPG--- 52 (269)
T ss_dssp HHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCCE-----------------------------EEEEECSTT---
T ss_pred cChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhcc-----------------------------cCCcccCCC---
Confidence 555443 5789999999999999999999 89999931 112223211
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+ ..+.|..||||||||||+|.. +. .| +.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 53 ---~-------~~~~d~~gHGT~vAgiia~~~-~~---~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~ 113 (269)
T 1gci_A 53 ---E-------PSTQDGNGHGTHVAGTIAALN-NS---IG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAG 113 (269)
T ss_dssp ---C-------CSCSCSSSHHHHHHHHHHCCC-SS---SB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred ---C-------CCCCCCCCChHHHHHHHhcCc-CC---CC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHH
Confidence 1 135678999999999999973 11 12 37999999999999998766 78889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
+++++|||||||.... ...+..++.++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 114 ~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 176 (269)
T 1gci_A 114 NNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ-------------- 176 (269)
T ss_dssp HTTCSEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT--------------
T ss_pred HCCCeEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC--------------
Confidence 9999999999998643 35677777889999999999999999888888889999999999642
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEe
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILA 520 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 520 (766)
.+.++.||++||.. ||+|||++|++
T Consensus 177 -----------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s 201 (269)
T 1gci_A 177 -----------------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQS 201 (269)
T ss_dssp -----------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEE
T ss_pred -----------------------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEe
Confidence 12678999999965 99999999999
Q ss_pred ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCC
Q 004242 521 AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600 (766)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 600 (766)
+++.. .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 202 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g---------------- 252 (269)
T 1gci_A 202 TYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG---------------- 252 (269)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------
T ss_pred ecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------------
Confidence 98754 8999999999999999999999999999999999999999999652
Q ss_pred CCCcccccCCccCccccCC
Q 004242 601 LATAFAFGSGHVDPESASD 619 (766)
Q Consensus 601 ~~~~~~~G~G~id~~~Al~ 619 (766)
.+..||+|+||+.+|++
T Consensus 253 --~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 --STNLYGSGLVNAEAATR 269 (269)
T ss_dssp --CHHHHTTCBCCHHHHTC
T ss_pred --CCCCcccCccCHHHHcC
Confidence 45689999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=433.39 Aligned_cols=264 Identities=33% Similarity=0.473 Sum_probs=218.3
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|++..+ ..+|..+++|+||+|||||||||++||+|+.. +.+.|..+
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~-----------------------------~g~~~~~~--- 53 (281)
T 1to2_E 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPS--- 53 (281)
T ss_dssp HHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTT---
T ss_pred cchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCc-----------------------------CCccccCC---
Confidence 555443 56899999999999999999999999999421 11222211
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+. ....|..||||||||||+|..+ + .| +.||||+|+|+.+|+++..+ +..++++++|+|++
T Consensus 54 ---~~------~~~~d~~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~ 115 (281)
T 1to2_E 54 ---ET------NPFQDNNSHGTHVAGTVAALNN-S---IG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAI 115 (281)
T ss_dssp ---CC------CTTCCSSSHHHHHHHHHHCCSS-S---SS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ---CC------CCCCCCCCcHHHHHHHHhccCC-C---Cc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHH
Confidence 10 1236789999999999999731 1 12 37999999999999998766 77889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC----CCcCCCCCceEEEecccCCcceeEEEEe
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI----STVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+++++|||||||.... .+.+..++.++.++|+++|+||||+|... ..++...|++|+|||++.
T Consensus 116 ~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~---------- 182 (281)
T 1to2_E 116 ANNMDVINMSLGGPSG---SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS---------- 182 (281)
T ss_dssp HTTCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT----------
T ss_pred HCCCcEEEECCcCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC----------
Confidence 9999999999998643 45677788889999999999999999763 356778899999999642
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
.+.++.||++||.. ||+|||.
T Consensus 183 ---------------------------------------------------~~~~~~fS~~G~~~--------di~APG~ 203 (281)
T 1to2_E 183 ---------------------------------------------------SNQRASFSSVGPEL--------DVMAPGV 203 (281)
T ss_dssp ---------------------------------------------------TSCBCTTCCCSTTC--------CEEEECS
T ss_pred ---------------------------------------------------CCCcCCcCCCCCCc--------eEEecCC
Confidence 12678999999964 9999999
Q ss_pred cEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCC
Q 004242 517 NILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGS 596 (766)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~ 596 (766)
+|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+++
T Consensus 204 ~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~------------- 257 (281)
T 1to2_E 204 SIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL------------- 257 (281)
T ss_dssp SEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCC-------------
T ss_pred CeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCccc-------------
Confidence 999998754 899999999999999999999999999999999999999999964
Q ss_pred CCCCCCCcccccCCccCccccCCC
Q 004242 597 SDTPLATAFAFGSGHVDPESASDP 620 (766)
Q Consensus 597 ~~~~~~~~~~~G~G~id~~~Al~~ 620 (766)
.+++.||||+||+.+|+++
T Consensus 258 -----g~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 258 -----GDSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -----SCHHHHTTCBCCHHHHTSS
T ss_pred -----CCCCCcccceecHHHHhhh
Confidence 2456899999999999874
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=441.59 Aligned_cols=270 Identities=29% Similarity=0.397 Sum_probs=217.2
Q ss_pred ccCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccc
Q 004242 123 FLGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYE 200 (766)
Q Consensus 123 ~~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~ 200 (766)
.|++..+ ..+|..+++|+||+|||||||||++||+|.++ ++++++|..++.
T Consensus 22 ~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~ 74 (327)
T 2x8j_A 22 PMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER---------------------------IIGGVNLTTDYG 74 (327)
T ss_dssp CHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG---------------------------EEEEEECSSGGG
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc---------------------------ccCCccccCCCC
Confidence 4555443 57899999999999999999999999999653 333344443221
Q ss_pred cccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHH
Q 004242 201 SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKA 279 (766)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 279 (766)
. +...+.|..||||||||||+|.. ++. | +.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 75 ~---------~~~~~~d~~gHGT~VAgiia~~~-~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 136 (327)
T 2x8j_A 75 G---------DETNFSDNNGHGTHVAGTVAAAE-TGS---G-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYA 136 (327)
T ss_dssp G---------CTTCCCCSSSHHHHHHHHHHCCC-CSS---B-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred C---------CCCCCCCCCCchHHHHHHHhccC-CCC---C-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHH
Confidence 0 11135688999999999999983 211 1 37999999999999998776 7888999999999
Q ss_pred Hh------CCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC-----CCcCCCCCceEEEecccCCc
Q 004242 280 VA------DGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI-----STVDNTAPWIMTVAASYTDR 348 (766)
Q Consensus 280 ~~------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~~itVga~~~~~ 348 (766)
++ .+++|||||||.... .+.+..++..+.++|++||+||||+|... ..++...+++|+|||++.+
T Consensus 137 ~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~- 212 (327)
T 2x8j_A 137 VDWRGPKGEQMRIITMSLGGPTD---SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD- 212 (327)
T ss_dssp HHCCCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT-
T ss_pred HhhcccccCCceEEEECCCcCCC---CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC-
Confidence 99 899999999998642 35677778889999999999999999752 3567788999999996421
Q ss_pred ceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCc
Q 004242 349 SFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGG 428 (766)
Q Consensus 349 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga 428 (766)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCccc
Q 004242 429 AGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIK 508 (766)
Q Consensus 429 ~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lK 508 (766)
+.++.||++||.
T Consensus 213 ------------------------------------------------------------~~~~~fS~~G~~-------- 224 (327)
T 2x8j_A 213 ------------------------------------------------------------LRLSDFTNTNEE-------- 224 (327)
T ss_dssp ------------------------------------------------------------CCBSCC---CCC--------
T ss_pred ------------------------------------------------------------CCCCCccCCCCC--------
Confidence 267899999985
Q ss_pred CcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh-----CCCCCHHHHHHHHHhccccC
Q 004242 509 PDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV-----HEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 509 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~~s~~~ik~~L~~TA~~~ 583 (766)
|||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+||++|++||+++
T Consensus 225 ~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~ 291 (327)
T 2x8j_A 225 IDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI 291 (327)
T ss_dssp CSEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECC
T ss_pred ceEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 49999999999998654 7999999999999999999999999 99999999999999999975
Q ss_pred CCCCCccccCCCCCCCCCCCcccccCCccCccccCC
Q 004242 584 NNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
. .++..+|+|+||+.+|++
T Consensus 292 g-----------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 292 G-----------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp S-----------------SCHHHHTTCEECTTHHHH
T ss_pred C-----------------CCCCceeeeEECHHHHHH
Confidence 2 245689999999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=426.79 Aligned_cols=263 Identities=28% Similarity=0.423 Sum_probs=218.5
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|+++.+ ..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 13 w~l~~i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~--- 61 (279)
T 1thm_A 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDN--- 61 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTT---
T ss_pred cChhhCChHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------------ccccccccCC---
Confidence 444433 5688887 699999999999999999999653 3333333321
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+ ..+.|..||||||||||+|...++.. +.||||+|+|+.+|+++..+ ++.+++++||+||+
T Consensus 62 ---~-------~~~~d~~gHGT~vAgiia~~~~n~~g--------~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~ 123 (279)
T 1thm_A 62 ---D-------STPQNGNGHGTHCAGIAAAVTNNSTG--------IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAA 123 (279)
T ss_dssp ---B-------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred ---C-------CCCCCCCCcHHHHHHHHhCccCCCCc--------cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHH
Confidence 1 14578899999999999998644322 37999999999999998766 78889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
++|++|||||||.... .+.+..++.++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 124 ~~g~~Vin~S~G~~~~---~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 186 (279)
T 1thm_A 124 DQGAKVISLSLGGTVG---NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------- 186 (279)
T ss_dssp HTTCSEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------------
T ss_pred HCCCCEEEEecCCCCC---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC--------------
Confidence 9999999999998643 35677778889999999999999999887788888999999999642
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEe
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILA 520 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 520 (766)
.+.++.||++||.. ||+|||++|++
T Consensus 187 -----------------------------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s 211 (279)
T 1thm_A 187 -----------------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYS 211 (279)
T ss_dssp -----------------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEE
T ss_pred -----------------------------------------------CCCcCCcCCCCCce--------EEEEcCCCeEE
Confidence 12678999999864 99999999999
Q ss_pred ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCC
Q 004242 521 AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600 (766)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 600 (766)
+++.. .|..++|||||||||||++||| ++|.+++.+||++|++||+++...
T Consensus 212 ~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------------- 262 (279)
T 1thm_A 212 TYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------------- 262 (279)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB--------------
T ss_pred EeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC--------------
Confidence 98754 8999999999999999999999 579999999999999999976421
Q ss_pred CCCcccccCCccCccccCC
Q 004242 601 LATAFAFGSGHVDPESASD 619 (766)
Q Consensus 601 ~~~~~~~G~G~id~~~Al~ 619 (766)
...||+|+||+.+|++
T Consensus 263 ---~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 ---GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ---TTTBSSEECCHHHHHH
T ss_pred ---CccccCCeeCHHHHhc
Confidence 1379999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-51 Score=430.80 Aligned_cols=263 Identities=24% Similarity=0.249 Sum_probs=209.6
Q ss_pred CCC-CCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCC
Q 004242 137 NLA-KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSP 215 (766)
Q Consensus 137 ~~G-~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~ 215 (766)
.+| +||+|||||||||++||+|.++. +.+ +.+... . .....
T Consensus 4 l~G~~gV~VaViDtGid~~Hpdl~g~~--------------------------~~~-~~~~~~------~-----~~~~d 45 (282)
T 3zxy_A 4 LKGDHNIRVAILDGPVDIAHPCFQGAD--------------------------LTV-LPTLAP------T-----AARSD 45 (282)
T ss_dssp CCCCTTSEEEEEESCCCTTSGGGTTCE--------------------------EEE-CCCSSC------C-----CCCTT
T ss_pred CcCCCCCEEEEEcCCCCCCChhHCCCe--------------------------eec-CcCCCC------C-----CCCCC
Confidence 568 79999999999999999997641 000 111100 0 00122
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccCC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVLSLSLGG 293 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~ 293 (766)
.|..||||||||||+|+..+ .+.||||+|+|+.+|++.+.+ ....++++||+||++++++|||||||.
T Consensus 46 ~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~ 115 (282)
T 3zxy_A 46 GFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGE 115 (282)
T ss_dssp CHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCE
T ss_pred CCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCcc
Confidence 34578999999999997422 237999999999999986543 677889999999999999999999997
Q ss_pred CCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCC
Q 004242 294 SSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKG 372 (766)
Q Consensus 294 ~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 372 (766)
... ......+..++..+.++|+++|+||||+|......+...|++|+|||++.
T Consensus 116 ~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------------------- 169 (282)
T 3zxy_A 116 LTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD-------------------------- 169 (282)
T ss_dssp EESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT--------------------------
T ss_pred ccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC--------------------------
Confidence 543 23445677788889999999999999999888788889999999999642
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccE
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPA 452 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 452 (766)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCC
Q 004242 453 ATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLK 532 (766)
Q Consensus 453 ~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 532 (766)
.+.++.||+||+. ..||||+|||.+|+++++.+
T Consensus 170 -----------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~------- 202 (282)
T 3zxy_A 170 -----------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG------- 202 (282)
T ss_dssp -----------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS-------
T ss_pred -----------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCCC-------
Confidence 1267889999874 46889999999999998765
Q ss_pred CCccccceEEeecccchhhhhhhHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccccc
Q 004242 533 SDDRRVLFNIISGTSMSCPHVSGLAALLKSVH----EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFG 608 (766)
Q Consensus 533 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G 608 (766)
.|..++|||||||||||++|||++++ |.++|++||++|++||++++.. .+.....+|
T Consensus 203 ------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-------------~~~~~~~~G 263 (282)
T 3zxy_A 203 ------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-------------APEQARRCL 263 (282)
T ss_dssp ------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------------------CGGGT
T ss_pred ------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-------------CCCccCcee
Confidence 79999999999999999999999875 7899999999999999976432 344566899
Q ss_pred CCccCccccCC
Q 004242 609 SGHVDPESASD 619 (766)
Q Consensus 609 ~G~id~~~Al~ 619 (766)
+|+||+.+|++
T Consensus 264 ~G~ln~~~A~~ 274 (282)
T 3zxy_A 264 AGRLNVSGAFT 274 (282)
T ss_dssp TCBCCHHHHHH
T ss_pred eeEeCHHHHHH
Confidence 99999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=425.18 Aligned_cols=289 Identities=28% Similarity=0.356 Sum_probs=225.3
Q ss_pred ccCCcc--CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccc
Q 004242 123 FLGLES--GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYE 200 (766)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~ 200 (766)
.|+++. ...+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~ 59 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT 59 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC
Confidence 355543 378999999999999999999999999999653 222333332210
Q ss_pred cccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHH
Q 004242 201 SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKA 279 (766)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 279 (766)
.......|..||||||||||+|....+ ...+.||||+|+|+.+|++++.+ +..+++++||+||
T Consensus 60 ---------~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 123 (310)
T 2ixt_A 60 ---------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (310)
T ss_dssp ---------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHH
Confidence 011235678999999999999985221 11237999999999999998776 6888999999999
Q ss_pred HhCCC-----cEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCC--CCCcCCCCCceEEEecccCCcceeE
Q 004242 280 VADGV-----DVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPS--ISTVDNTAPWIMTVAASYTDRSFPA 352 (766)
Q Consensus 280 ~~~g~-----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~~itVga~~~~~~~~~ 352 (766)
+++++ +|||||||.... ...+..++.++.++|++||+||||+|.. ...++...|++|+|||++....
T Consensus 124 ~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~--- 197 (310)
T 2ixt_A 124 ADQATATGTKTIISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ--- 197 (310)
T ss_dssp HHHHHHHTCCEEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE---
T ss_pred HHhhhccCCCeEEEEcCCCCCC---CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc---
Confidence 99988 999999998643 4567777788999999999999999976 3456778899999999641000
Q ss_pred EEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEE
Q 004242 353 IVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGML 432 (766)
Q Consensus 353 ~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i 432 (766)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCC----CCccc
Q 004242 433 LLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVG----HDVIK 508 (766)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~----~~~lK 508 (766)
.....++.||++||.... ..+.|
T Consensus 198 -----------------------------------------------------~g~~~~~~~S~~G~~~~~g~~~~~~~~ 224 (310)
T 2ixt_A 198 -----------------------------------------------------NGTYRVADYSSRGYISTAGDYVIQEGD 224 (310)
T ss_dssp -----------------------------------------------------TTEEEECTTSCCCCTTTTTSSSCCTTC
T ss_pred -----------------------------------------------------CCCeeeccccCCCCccCCccccccCCC
Confidence 000157889999995321 12359
Q ss_pred CcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCC
Q 004242 509 PDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNS 588 (766)
Q Consensus 509 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~ 588 (766)
|||+|||.+|+++++.. .|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+.
T Consensus 225 ~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~ 291 (310)
T 2ixt_A 225 IEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG 291 (310)
T ss_dssp CCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS
T ss_pred eeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC
Confidence 99999999999998654 79999999999999999999999999999999999999999998764321
Q ss_pred ccccCCCCCCCCCCCcccccCCccCc
Q 004242 589 PIADVGGSSDTPLATAFAFGSGHVDP 614 (766)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~G~G~id~ 614 (766)
+...+..+..+|||++|+
T Consensus 292 --------~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 292 --------YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp --------TTCCSSSBTTTBTCBCCC
T ss_pred --------cccccCCccccccceeec
Confidence 111456778999999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=433.01 Aligned_cols=270 Identities=26% Similarity=0.286 Sum_probs=217.8
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
+++|+....++||+|||||||||++||+|.++. +.+..+|..+ +.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~--------------------------~~~~~~~~~~------~~--- 55 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGAD--------------------------LTRLPSLVSG------EA--- 55 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE--------------------------EEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc--------------------------ccCCCcccCC------CC---
Confidence 468999887799999999999999999997641 1111222211 11
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC--CCHHHHHHHHHHHHhCCCcEE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG--CSSSDILAAIDKAVADGVDVL 287 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVI 287 (766)
....|..||||||||||+|+..+ .+.||||+|+|+.+|++.+.+ ....++++||+||++++++||
T Consensus 56 ---~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi 122 (306)
T 4h6w_A 56 ---NANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANII 122 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred ---CCCCCCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceee
Confidence 12356789999999999997422 247999999999999996543 677889999999999999999
Q ss_pred EeccCCCCC-CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeee
Q 004242 288 SLSLGGSSR-PYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSS 366 (766)
Q Consensus 288 n~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~ 366 (766)
|+|||.... ......+..++..+.++|+++|+||||+|.....++...+++|+|||++..
T Consensus 123 ~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 183 (306)
T 4h6w_A 123 NVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------------------- 183 (306)
T ss_dssp EECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-------------------
T ss_pred eccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-------------------
Confidence 999996543 344556777888999999999999999998877888889999999996421
Q ss_pred eccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccccc
Q 004242 367 LYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIAD 446 (766)
Q Consensus 367 ~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 446 (766)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCC
Q 004242 447 AHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATT 526 (766)
Q Consensus 447 ~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 526 (766)
+.++.||++|+. ..||||+|||.+|+++++.+
T Consensus 184 ------------------------------------------~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~~- 215 (306)
T 4h6w_A 184 ------------------------------------------GKPVDFSNWGDA-----YQKQGILAPGKDILGAKPNG- 215 (306)
T ss_dssp ------------------------------------------SCBCSSSCBCHH-----HHHHEEEEECSSEEEECTTS-
T ss_pred ------------------------------------------CCccccccccCC-----cCcceeecCCcCcccccCCC-
Confidence 267789999974 46899999999999998765
Q ss_pred CCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCC
Q 004242 527 SPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV----HEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLA 602 (766)
Q Consensus 527 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 602 (766)
.|..++|||||||||||++|||+++ +|.|+|++||++|++||+++... ...
T Consensus 216 ------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~-------------~~~ 270 (306)
T 4h6w_A 216 ------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPK-------------DTD 270 (306)
T ss_dssp ------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTT-------------TCS
T ss_pred ------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCC-------------CCC
Confidence 8999999999999999999999865 69999999999999999987432 223
Q ss_pred CcccccCCccCccccCC
Q 004242 603 TAFAFGSGHVDPESASD 619 (766)
Q Consensus 603 ~~~~~G~G~id~~~Al~ 619 (766)
....||+|+||+.+|++
T Consensus 271 ~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 271 DQSRCLMGKLNILDAIE 287 (306)
T ss_dssp CGGGGTTCBCCHHHHHH
T ss_pred CCCCcceeecCHHHHHH
Confidence 44579999999999987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=432.71 Aligned_cols=270 Identities=30% Similarity=0.454 Sum_probs=219.6
Q ss_pred ccCCcc--CCCccccCCCCC--CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccc
Q 004242 123 FLGLES--GIGLWDATNLAK--DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKG 198 (766)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g 198 (766)
.|+++. ...+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~ 60 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRG 60 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGG
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCC
Confidence 355544 36789988 899 999999999999999999753 2222233221
Q ss_pred cccccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHH
Q 004242 199 YESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAID 277 (766)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~ 277 (766)
... . ......|..||||||||||+|.. ++ .| +.||||+|+|+.+|+++..+ +..+++++||+
T Consensus 61 ~~~--~------~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~ 123 (320)
T 2z30_A 61 KVS--T------KLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIE 123 (320)
T ss_dssp CCB--C------CHHHHBCSSSHHHHHHHHHHCCS-SS---BS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHH
T ss_pred ccC--C------CCCCCCCCCCCHHHHHHHHHccc-CC---Cc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHH
Confidence 100 0 00123678999999999999972 21 12 37999999999999998776 77889999999
Q ss_pred HHHhC--------------------CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCc
Q 004242 278 KAVAD--------------------GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPW 337 (766)
Q Consensus 278 ~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~ 337 (766)
||+++ +++|||||||.... ...+..++.++.++|++||+||||+|.....++...|+
T Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~ 200 (320)
T 2z30_A 124 QAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPE 200 (320)
T ss_dssp HHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTT
T ss_pred HHHhCcccccccccccccccccccCCceEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCC
Confidence 99987 99999999998643 35567777789999999999999999887788889999
Q ss_pred eEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchh
Q 004242 338 IMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRT 417 (766)
Q Consensus 338 ~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~ 417 (766)
+|+|||++.
T Consensus 201 vi~Vga~~~----------------------------------------------------------------------- 209 (320)
T 2z30_A 201 VIAVGAIDS----------------------------------------------------------------------- 209 (320)
T ss_dssp EEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999999642
Q ss_pred hhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCC
Q 004242 418 GKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSR 497 (766)
Q Consensus 418 ~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~ 497 (766)
.+.++.||++
T Consensus 210 ----------------------------------------------------------------------~~~~~~~S~~ 219 (320)
T 2z30_A 210 ----------------------------------------------------------------------NDNIASFSNR 219 (320)
T ss_dssp ----------------------------------------------------------------------TSCBCTTSCS
T ss_pred ----------------------------------------------------------------------CCCcCcccCC
Confidence 1267899999
Q ss_pred CCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-------------
Q 004242 498 GPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH------------- 564 (766)
Q Consensus 498 Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------------- 564 (766)
|| +|+|||.+|+++++.. .|..++|||||||||||++|||+|++
T Consensus 220 g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~ 276 (320)
T 2z30_A 220 QP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTF 276 (320)
T ss_dssp SC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCT
T ss_pred CC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccC
Confidence 97 7899999999998754 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCC
Q 004242 565 EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 565 P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
|+|++.+||++|++||+++. .+..+..||+|+||+.+|++
T Consensus 277 p~lt~~~v~~~L~~ta~~~~---------------~~g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 277 DDISKNTVRGILHITADDLG---------------PTGWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp TCCSTTSHHHHHHHHSBCCS---------------SSSSBTTTBTCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHhhCccCC---------------CCCCCCCcCCceeCHHHHHH
Confidence 99999999999999999763 23345689999999999986
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=434.45 Aligned_cols=271 Identities=19% Similarity=0.132 Sum_probs=216.5
Q ss_pred CCCccccCCCCC--CcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcc
Q 004242 129 GIGLWDATNLAK--DVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRI 206 (766)
Q Consensus 129 ~~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~ 206 (766)
...+|.. ++|+ ||+||||||||| +||+|.++ ++..++|..+. .
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~-----~- 76 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDG-----S- 76 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTC-----C-
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCC-----C-
Confidence 3678988 8999 999999999999 99999653 22223333210 0
Q ss_pred ccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhC----
Q 004242 207 NETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVAD---- 282 (766)
Q Consensus 207 ~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---- 282 (766)
..+...+.|..||||||||||+|. .| +.||||+|+|+.+|++++.+.. ++++||+||+++
T Consensus 77 --~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~ 140 (347)
T 2iy9_A 77 --PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLA 140 (347)
T ss_dssp --SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSC
T ss_pred --CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcc
Confidence 001113567889999999999997 12 2799999999999999775533 899999999999
Q ss_pred --CCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCC-------CCCcCCCCC----------ceEEEec
Q 004242 283 --GVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPS-------ISTVDNTAP----------WIMTVAA 343 (766)
Q Consensus 283 --g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~~itVga 343 (766)
|++|||||||........+.+..++..+.++|++||+||||+|.. ...++...+ ++|+|||
T Consensus 141 ~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga 220 (347)
T 2iy9_A 141 PGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA 220 (347)
T ss_dssp TTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEE
T ss_pred cCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEE
Confidence 999999999976544556778888889999999999999999975 345677788 9999999
Q ss_pred ccC--CcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhH
Q 004242 344 SYT--DRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGE 421 (766)
Q Consensus 344 ~~~--~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~ 421 (766)
++. +....
T Consensus 221 ~~~~~~g~~~---------------------------------------------------------------------- 230 (347)
T 2iy9_A 221 LAQYRKGETP---------------------------------------------------------------------- 230 (347)
T ss_dssp ECCCCTTSCC----------------------------------------------------------------------
T ss_pred cccCCCCcee----------------------------------------------------------------------
Confidence 753 11000
Q ss_pred HHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCC
Q 004242 422 QVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSL 501 (766)
Q Consensus 422 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~ 501 (766)
.....++.||++||+
T Consensus 231 ----------------------------------------------------------------~~~~~~~~fS~~G~~- 245 (347)
T 2iy9_A 231 ----------------------------------------------------------------VLHGGGITGSRFGNN- 245 (347)
T ss_dssp ----------------------------------------------------------------CBCCCSSSCBCBCTT-
T ss_pred ----------------------------------------------------------------cccCCCCCCCCCCCC-
Confidence 001145799999995
Q ss_pred CCCCcccCcEEeCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004242 502 VGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAY 581 (766)
Q Consensus 502 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 581 (766)
||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+
T Consensus 246 ------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~ 306 (347)
T 2iy9_A 246 ------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESAD 306 (347)
T ss_dssp ------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSE
T ss_pred ------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCc
Confidence 679999999999999754 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCC
Q 004242 582 TLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDP 620 (766)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~ 620 (766)
++... ....+|+|+||+.+|++.
T Consensus 307 ~~~~~----------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 307 KYPSL----------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp ECGGG----------------TTTSGGGEECCHHHHHHH
T ss_pred cCCCC----------------CCccccCCEecHHHHHHH
Confidence 86421 225899999999999873
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=430.95 Aligned_cols=301 Identities=27% Similarity=0.379 Sum_probs=221.2
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccC-CCccccccccccccccccccCccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQS-NCNNKLIGARAFFKGYESVVGRIN 207 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~-~~n~kiig~~~~~~g~~~~~~~~~ 207 (766)
+..+|+.+++|+||+||||||||+ +||+|.++-.. .|+-........... ...+.. ....+.+.+... .
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~----~ 90 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPF-DEGDWFDNWACG----G 90 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCB-CCCCCBCTTTTS----C
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCcc-cccccccccccc----C
Confidence 367899999999999999999998 99999765211 111000000000000 000000 000000000000 0
Q ss_pred cccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh------
Q 004242 208 ETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA------ 281 (766)
Q Consensus 208 ~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------ 281 (766)
.+.+.....|..||||||||||+|...+... +.||||+|+|+.+|+++..++..++++++|+||++
T Consensus 91 ~~~~~~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~ 162 (340)
T 3lpc_A 91 RPDPRKERSDSSWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGI 162 (340)
T ss_dssp TTCGGGSCBCCCCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTS
T ss_pred CCCcccCCCCCCCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhccccccc
Confidence 0112224678899999999999998654322 37999999999999998877889999999999998
Q ss_pred ----CCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEe
Q 004242 282 ----DGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 282 ----~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
.+++|||||||.... ....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 163 ~~~~~~~~Vin~S~G~~~~--~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------- 231 (340)
T 3lpc_A 163 PENRNPAKVINMSLGSDGQ--CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--------- 231 (340)
T ss_dssp CCCSSCCSEEEECCCEESC--CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT---------
T ss_pred ccccCCCeEEEeCcCCCCC--cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC---------
Confidence 899999999997532 2345667777889999999999999987654 467788999999996421
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
+.++.||++|| ||||+|||.
T Consensus 232 ----------------------------------------------------~~~~~~S~~g~--------~~di~ApG~ 251 (340)
T 3lpc_A 232 ----------------------------------------------------GIRASFSNYGV--------DVDLAAPGQ 251 (340)
T ss_dssp ----------------------------------------------------SSBCTTCCBST--------TCCEEEECS
T ss_pred ----------------------------------------------------CCcCCCCCCCC--------CceEEecCC
Confidence 26789999998 459999999
Q ss_pred cEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhh-C---CCCCHHHHHHHHHhccccCCCCCCcccc
Q 004242 517 NILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSV-H---EDWSTAAIKSALMTTAYTLNNRNSPIAD 592 (766)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~~s~~~ik~~L~~TA~~~~~~~~~~~~ 592 (766)
+|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++|++||+++.
T Consensus 252 ~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~-------- 317 (340)
T 3lpc_A 252 DILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN-------- 317 (340)
T ss_dssp SEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS--------
T ss_pred CeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC--------
Confidence 999998754211 11236999999999999999999999998 5 99999999999999999762
Q ss_pred CCCCCCCCCCCcccccCCccCccccCCC
Q 004242 593 VGGSSDTPLATAFAFGSGHVDPESASDP 620 (766)
Q Consensus 593 ~~~~~~~~~~~~~~~G~G~id~~~Al~~ 620 (766)
......||+|+||+.+|++.
T Consensus 318 --------~~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 318 --------GRLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp --------SCCSSCCCSSBCCHHHHHHH
T ss_pred --------CCCCCCcccceecHHHHHHH
Confidence 23455899999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=464.28 Aligned_cols=356 Identities=21% Similarity=0.211 Sum_probs=244.2
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHh-----CCCcEE
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVA-----DGVDVL 287 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 287 (766)
.|+.||||||||||||.. ++. .+.||||+|+|+.+|+++..+ ....+++.+|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~~--------g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SSR--------DVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SSS--------SSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CCC--------CceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 578999999999999986 322 237999999999999997643 356778888888887 799999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHH-hCCCEEEEecCCCCCCCCC--cCC--CCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 288 SLSLGGSSRPYYRDTVAIASFGAT-QSGVFVSCSAGNSGPSIST--VDN--TAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 288 n~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
|||||........+.+..++.++. ++|++||+||||+|....+ .++ ..+++|+|||++........+....
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~~~---- 413 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMRE---- 413 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccccc----
Confidence 999999765444566777777876 8999999999999986543 444 3799999999754321100000000
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 414 -------------------------------------------------------------------------------- 413 (1354)
T 3lxu_X 414 -------------------------------------------------------------------------------- 413 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
...+.++.|||+||+.+ +++||||+|||++|+++.
T Consensus 414 -------------------------------------------~~~g~~asFSS~GPt~d--g~~KpDIaAPG~~I~St~ 448 (1354)
T 3lxu_X 414 -------------------------------------------KLPGNVYTWTSRDPCID--GGQGVTVCAPGGAIASVP 448 (1354)
T ss_dssp -----------------------------------------------CCCCCCCCSCCSS--SSCCEEEEEEC-------
T ss_pred -------------------------------------------CCCCccccccCCCCCcc--CCCcceEEecCceEEEee
Confidence 11237899999999986 899999999999999985
Q ss_pred CCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCC
Q 004242 523 PATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS----VHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD 598 (766)
Q Consensus 523 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 598 (766)
... ...|..++|||||||||||++|||++ .+|+|++.+||++|++||+++.
T Consensus 449 ~~~-----------~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~-------------- 503 (1354)
T 3lxu_X 449 QFT-----------MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG-------------- 503 (1354)
T ss_dssp -------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCT--------------
T ss_pred cCC-----------CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCC--------------
Confidence 432 11789999999999999999999986 7999999999999999999763
Q ss_pred CCCCCcccccCCccCccccCCCCceecCCchhhHHHhhhcCCCcccceeecccccccCCCCCCCCCCCCCCceeeeccCC
Q 004242 599 TPLATAFAFGSGHVDPESASDPGLIYDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSFAVNFKGN 678 (766)
Q Consensus 599 ~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~~~~lc~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~ 678 (766)
...++.||+|+||+.+|++..+.|+....+++.|+|..+..... .+.-+.. .+ + .
T Consensus 504 --~~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~r-gIylR~~-~~-------------~--------~ 558 (1354)
T 3lxu_X 504 --YVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK-GIHLRQG-VQ-------------R--------N 558 (1354)
T ss_dssp --TSCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBS-SEEECSS-CC-------------C--------S
T ss_pred --CCCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCC-ceEEecc-cc-------------C--------C
Confidence 23456899999999999999999999999999999988743221 1111100 00 0 0
Q ss_pred ccceeEEEEEEEEecCC--CCeE----EEEEEe-CCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEE
Q 004242 679 VKNMSLEYERSVTNVGT--SYCT----YAVKVE-EPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWV 751 (766)
Q Consensus 679 ~~~~~~~~~rtvtn~g~--~~~t----y~~~v~-~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~ 751 (766)
.....++++-+..|... .... -++.+. ..+- |+ -|..|.+ .++.++|.|+|+....+.+-+++.|...
T Consensus 559 ~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~w--v~-~p~~l~l--~~~~r~~~v~vDp~~L~~G~h~~~v~~~ 633 (1354)
T 3lxu_X 559 SIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPW--VQ-CGAFLDL--SYGTRSIAVRVDPTGLQPGVHSAVIRAY 633 (1354)
T ss_dssp CEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTT--EE-ECSCEEC--TTSCEEEEEEECGGGCCSEEEEEEEEEE
T ss_pred ceEEEEEEeeeecCcccCChhhccceEEEEEEecCCCc--ee-cccceee--cCCCceEEEEECCCCCCCcceeEEEEEE
Confidence 00012222333322111 1111 122222 1222 22 3777766 3788999999998765433389999877
Q ss_pred C-----CceeEEeEEEEE
Q 004242 752 S-----GKYAVKSPIAVT 764 (766)
Q Consensus 752 ~-----~~~~v~~p~~v~ 764 (766)
| .+...|+||.|.
T Consensus 634 D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 634 DTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp ESSCTTSCCSEEEEEEEE
T ss_pred EcCCcccCceEEeeEEEE
Confidence 6 468999999886
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=405.13 Aligned_cols=235 Identities=30% Similarity=0.408 Sum_probs=199.9
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|..+++|+||+|||||||||++||+|.++ ++..++|... +
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------~---- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDN------D---- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTT------B----
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCC------C----
Confidence 46899999999999999999999999999653 2222333221 1
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC--CCcE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD--GVDV 286 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dV 286 (766)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|++++ +++|
T Consensus 62 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~V 124 (284)
T 1sh7_A 62 ---ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSV 124 (284)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEE
T ss_pred ---CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcE
Confidence 145788999999999999872 5999999999999998766 7888999999999984 7999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceEeee
Q 004242 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365 (766)
Q Consensus 287 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~ 365 (766)
||||||... ...+..++.++.++|++||+||||+|.... .++...|++|+|||++.
T Consensus 125 in~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 181 (284)
T 1sh7_A 125 ANMSLGGGQ----STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS------------------- 181 (284)
T ss_dssp EEECCCBSC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT-------------------
T ss_pred EEeCCCCCC----CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC-------------------
Confidence 999999863 456777778899999999999999997653 45778899999999642
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccc
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIA 445 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 445 (766)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCC
Q 004242 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 446 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
.+.++.||++||.. ||+|||++|+++++.+
T Consensus 182 ------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~ 211 (284)
T 1sh7_A 182 ------------------------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWYDG 211 (284)
T ss_dssp ------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS
T ss_pred ------------------------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecCCC
Confidence 12678999999965 9999999999998654
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLN 584 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 584 (766)
.|..++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 212 -------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 212 -------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp -------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 7999999999999999999999999999999999999999999763
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=434.20 Aligned_cols=291 Identities=27% Similarity=0.297 Sum_probs=222.1
Q ss_pred CCccc-cCCCCCCcEEEEEecccCC------CCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccc
Q 004242 130 IGLWD-ATNLAKDVIVGVIDTGIWP------EHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESV 202 (766)
Q Consensus 130 ~~~~~-~~~~G~gv~VaVIDtGid~------~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~ 202 (766)
..+|. .+++|+||+|||||||||+ .||+|.++ ++..++|.+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 45887 7999999999999999999 79999653 2222333211
Q ss_pred cCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCC---CHHHHHHHHHHH
Q 004242 203 VGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGC---SSSDILAAIDKA 279 (766)
Q Consensus 203 ~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a 279 (766)
..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..+. ...++.++|++|
T Consensus 60 ----------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a 118 (434)
T 1wmd_A 60 ----------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQA 118 (434)
T ss_dssp ----------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHH
T ss_pred ----------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHH
Confidence 1467889999999999998631 1379999999999999987653 456899999999
Q ss_pred HhCCCcEEEeccCCCCCCCcccHHHHHHHHH-HhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeEEEEe
Q 004242 280 VADGVDVLSLSLGGSSRPYYRDTVAIASFGA-TQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 280 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+++|++|||||||......+ +....++..+ .++|+++|+||||+|.... ..+..++++|+|||++..+...
T Consensus 119 ~~~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----- 192 (434)
T 1wmd_A 119 YSAGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----- 192 (434)
T ss_dssp HHTTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----
T ss_pred HhcCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-----
Confidence 99999999999998653222 2334444444 5899999999999997643 4567889999999975322100
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
|.
T Consensus 193 ----------------------------------------------------------------------~~-------- 194 (434)
T 1wmd_A 193 ----------------------------------------------------------------------GS-------- 194 (434)
T ss_dssp ----------------------------------------------------------------------CG--------
T ss_pred ----------------------------------------------------------------------Cc--------
Confidence 00
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
+ ....+.++.|||+||+.+ +++||||+|||+
T Consensus 195 -----------------------------~------------------~~~~~~~a~fS~~G~~~~--g~~kpdi~ApG~ 225 (434)
T 1wmd_A 195 -----------------------------Y------------------ADNINHVAQFSSRGPTKD--GRIKPDVMAPGT 225 (434)
T ss_dssp -----------------------------G------------------GSCTTSBCTTSCCCCCTT--SCCCCCEEEECS
T ss_pred -----------------------------c------------------cCCCCccccccCCCCCCC--CCCCceEEcCCC
Confidence 0 011247899999999986 999999999999
Q ss_pred cEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCCccc
Q 004242 517 NILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDW-----STAAIKSALMTTAYTLNNRNSPIA 591 (766)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~-----s~~~ik~~L~~TA~~~~~~~~~~~ 591 (766)
+|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 226 ~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~------- 297 (434)
T 1wmd_A 226 FILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG------- 297 (434)
T ss_dssp SEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-------
T ss_pred CeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC-------
Confidence 999998643210000 00113379999999999999999999999999876 89999999999999642
Q ss_pred cCCCCCCCCCCCcccccCCccCccccCCCC
Q 004242 592 DVGGSSDTPLATAFAFGSGHVDPESASDPG 621 (766)
Q Consensus 592 ~~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 621 (766)
...+.+.||||++|+.+|++..
T Consensus 298 --------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 --------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp --------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred --------CCCCCccCCcCeEeHHHhcccc
Confidence 2345678999999999999744
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=396.97 Aligned_cols=236 Identities=29% Similarity=0.388 Sum_probs=198.9
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|..+++|+||+|||||||||++||+|.++ +...++|.+ .+
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~------~~---- 63 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFID------ND---- 63 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTT------TB----
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCC------CC----
Confidence 46799999999999999999999999999654 222223322 11
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHh--CCCcE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVA--DGVDV 286 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~dV 286 (766)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|+++ .+++|
T Consensus 64 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~V 126 (278)
T 2b6n_A 64 ---YDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAV 126 (278)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEE
T ss_pred ---CCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeE
Confidence 145788999999999999862 6999999999999998766 788899999999997 59999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceEeee
Q 004242 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365 (766)
Q Consensus 287 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~ 365 (766)
||||||... .+.+..++.++.++|++||+||||+|.... .++...+++|+|||++.
T Consensus 127 in~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 183 (278)
T 2b6n_A 127 ANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS------------------- 183 (278)
T ss_dssp EEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred EEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC-------------------
Confidence 999999854 356777777899999999999999997654 35778899999999642
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccc
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIA 445 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 445 (766)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCC
Q 004242 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 446 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
.+.++.||++||.. ||+|||++|+++++..
T Consensus 184 ------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~ 213 (278)
T 2b6n_A 184 ------------------------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWYTS 213 (278)
T ss_dssp ------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS
T ss_pred ------------------------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECcccCC
Confidence 12678999999854 9999999999998642
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 583 (766)
. ..|..++|||||||||||++|||+|++|+|++.+||++|++||++.
T Consensus 214 ~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 214 N-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp T-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred C-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 1 1789999999999999999999999999999999999999999875
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=399.29 Aligned_cols=235 Identities=29% Similarity=0.379 Sum_probs=200.4
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|..+++|+||+|||||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------ 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------ 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC------------
Confidence 56899999999999999999999999999654 222222221
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC--CCcE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD--GVDV 286 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dV 286 (766)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ ....+++++|+|+++. +++|
T Consensus 62 ---~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~v 124 (276)
T 4dzt_A 62 ---GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAV 124 (276)
T ss_dssp ---SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEE
T ss_pred ---CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeE
Confidence 135678999999999999872 6999999999999998776 7889999999999987 8999
Q ss_pred EEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cCCCCCceEEEecccCCcceeEEEEeCCCceEeee
Q 004242 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST-VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGS 365 (766)
Q Consensus 287 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~ 365 (766)
||||||... ...+..++.++.++|+++|+||||+|..... .+...+++|+|||++.
T Consensus 125 in~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 181 (276)
T 4dzt_A 125 ANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------------- 181 (276)
T ss_dssp EEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred EEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------------------
Confidence 999999753 4567777788999999999999999976554 4778899999999642
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccc
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIA 445 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 445 (766)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCC
Q 004242 446 DAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPAT 525 (766)
Q Consensus 446 ~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 525 (766)
.+.++.||++||.. ||+|||++|+++++..
T Consensus 182 ------------------------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~ 211 (276)
T 4dzt_A 182 ------------------------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWYTS 211 (276)
T ss_dssp ------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS
T ss_pred ------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEccccCC
Confidence 12688999999976 9999999999998653
Q ss_pred CCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004242 526 TSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLN 584 (766)
Q Consensus 526 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 584 (766)
. ..|..++|||||||||||++|||+|++|++++++||++|++||++..
T Consensus 212 ~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 212 D-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp S-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred C-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 2 17899999999999999999999999999999999999999999864
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=401.66 Aligned_cols=227 Identities=34% Similarity=0.450 Sum_probs=193.8
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
.|+ ..+|+||+|||||||||++||+|.++ +...++|.
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~--------------- 60 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY--------------- 60 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS---------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCC---------------
Confidence 344 37899999999999999999999654 22222232
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCC------
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGV------ 284 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~------ 284 (766)
..+.|..||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|++++++
T Consensus 61 -~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~ 125 (279)
T 2pwa_A 61 -YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPK 125 (279)
T ss_dssp -SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTT
T ss_pred -CCCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCC
Confidence 035678999999999999872 6999999999999998876 788999999999999987
Q ss_pred -cEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceE
Q 004242 285 -DVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSF 362 (766)
Q Consensus 285 -dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~ 362 (766)
+|||||||.. ..+.+..++.++.++|++||+||||+|.... .++...|++|+|||++.+
T Consensus 126 ~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 186 (279)
T 2pwa_A 126 GVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------- 186 (279)
T ss_dssp EEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------
T ss_pred ccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------------
Confidence 9999999975 2456777888899999999999999997654 457788999999996421
Q ss_pred eeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc
Q 004242 363 EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE 442 (766)
Q Consensus 363 ~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 442 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeec
Q 004242 443 LIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAW 522 (766)
Q Consensus 443 ~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 522 (766)
+.++.||++||.. ||+|||++|++++
T Consensus 187 ----------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~ 212 (279)
T 2pwa_A 187 ----------------------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTW 212 (279)
T ss_dssp ----------------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEE
T ss_pred ----------------------------------------------CCcCCcCCCCCcc--------eEEEecCCeEEee
Confidence 2678999999964 9999999999998
Q ss_pred CCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 004242 523 PATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTL 583 (766)
Q Consensus 523 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 583 (766)
+.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++.
T Consensus 213 ~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 213 IGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKG 259 (279)
T ss_dssp TTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred cCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence 764 7999999999999999999999999 9999999999999999974
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=425.69 Aligned_cols=292 Identities=15% Similarity=0.146 Sum_probs=214.5
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+++|+||+|||||||||++||+|.++-. ....++|.+. +.+
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~------~~~- 74 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQ------DPD- 74 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTT------BSC-
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCC------CCC-
Confidence 35789999999999999999999999999976410 0011222211 111
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 287 (766)
+.+...+.|..+|||||||||||...++.. +.||||+|+|+.+|+++ +..+++++|++++++ ++++||
T Consensus 75 p~~~~~~~d~~gHGT~vAGiiaa~~~n~~g--------~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vi 143 (471)
T 1p8j_A 75 PQPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIY 143 (471)
T ss_dssp CCCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEE
T ss_pred CCCccCCCCCCCcHHHHHHHHHeeccCCCC--------CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEE
Confidence 011124568899999999999997544322 27999999999999985 346789999999999 999999
Q ss_pred EeccCCCCCC----CcccHHHHHHHHHH-----hCCCEEEEecCCCCCCCCC----cCCCCCceEEEecccCCcceeEEE
Q 004242 288 SLSLGGSSRP----YYRDTVAIASFGAT-----QSGVFVSCSAGNSGPSIST----VDNTAPWIMTVAASYTDRSFPAIV 354 (766)
Q Consensus 288 n~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~~p~~itVga~~~~~~~~~~~ 354 (766)
|||||..... .....+..++.++. .+|++||+||||+|..... ....++++|+|||++.
T Consensus 144 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~-------- 215 (471)
T 1p8j_A 144 SASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ-------- 215 (471)
T ss_dssp EECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT--------
T ss_pred EeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC--------
Confidence 9999985431 11223344444444 4799999999999875321 1234589999999642
Q ss_pred EeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEe
Q 004242 355 KLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLL 434 (766)
Q Consensus 355 ~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 434 (766)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeC
Q 004242 435 NSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAP 514 (766)
Q Consensus 435 ~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 514 (766)
.+.++.||++||... ...+|...+|
T Consensus 216 -----------------------------------------------------~g~~a~~S~~g~~~~--~~~~~~~~~~ 240 (471)
T 1p8j_A 216 -----------------------------------------------------FGNVPWYSEACSSTL--ATTYSSGNQN 240 (471)
T ss_dssp -----------------------------------------------------TSCCCTTCCBCTTCC--EEEECCCSTT
T ss_pred -----------------------------------------------------CCCcccccCCCCcce--EEeCCCCCCC
Confidence 126789999999875 3344555555
Q ss_pred CCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 004242 515 GVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVG 594 (766)
Q Consensus 515 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~ 594 (766)
|.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||++++.....+....
T Consensus 241 g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~ 308 (471)
T 1p8j_A 241 EKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNG 308 (471)
T ss_dssp SCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECT
T ss_pred CCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecC
Confidence 67999987532 168999999999999999999999999999999999999999998764433232221
Q ss_pred CCCCCCCCCcccccCCccCccccCCCCc
Q 004242 595 GSSDTPLATAFAFGSGHVDPESASDPGL 622 (766)
Q Consensus 595 ~~~~~~~~~~~~~G~G~id~~~Al~~~l 622 (766)
.+ ......||+|+||+.+|++...
T Consensus 309 ~g----~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 309 VG----RKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp TS----CEEBTTTBTCBCCHHHHHHHHH
T ss_pred CC----cccCCCCCCEEEcHhHHHHHhh
Confidence 11 2245689999999999998443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-46 Score=422.34 Aligned_cols=283 Identities=18% Similarity=0.196 Sum_probs=213.2
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|..+++|+||+|||||||||++||+|.++- + ..+.++|..+ ..
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~------------------~~~~~d~~~~------~~-- 89 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C------------------AEGSWDFNDN------TN-- 89 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C------------------GGGCEETTTT------BS--
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c------------------ccCcccCCCC------CC--
Confidence 3568999999999999999999999999997641 0 0012233221 11
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
+.....|..||||||||||||...++.. +.||||+|+|+.+|+++.. +...++++||+||++++ +|||
T Consensus 90 --~~~p~~d~~gHGT~vAGiiaa~~~n~~~--------~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin 157 (503)
T 2id4_A 90 --LPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYS 157 (503)
T ss_dssp --CCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEE
T ss_pred --CCCCCCCCCChHHHHHHHHHhccCCCCC--------cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEE
Confidence 1112357889999999999998544322 2699999999999999743 67888999999999998 9999
Q ss_pred eccCCCCCC----CcccHHHHHHHHHH-----hCCCEEEEecCCCCCCCC--CcC--CCCCceEEEecccCCcceeEEEE
Q 004242 289 LSLGGSSRP----YYRDTVAIASFGAT-----QSGVFVSCSAGNSGPSIS--TVD--NTAPWIMTVAASYTDRSFPAIVK 355 (766)
Q Consensus 289 ~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~p~~itVga~~~~~~~~~~~~ 355 (766)
||||..... .....+..++.++. .+|++||+||||+|.... .++ ..++++|+|||++.
T Consensus 158 ~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~--------- 228 (503)
T 2id4_A 158 CSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH--------- 228 (503)
T ss_dssp ECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT---------
T ss_pred eCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC---------
Confidence 999986431 12234555555665 479999999999986533 222 25678999999642
Q ss_pred eCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEec
Q 004242 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLN 435 (766)
Q Consensus 356 ~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 435 (766)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEe--
Q 004242 436 SDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTA-- 513 (766)
Q Consensus 436 ~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A-- 513 (766)
.+.++.||++||.. |++|
T Consensus 229 ----------------------------------------------------~~~~a~~S~~g~~~--------~~~a~~ 248 (503)
T 2id4_A 229 ----------------------------------------------------KDLHPPYSEGCSAV--------MAVTYS 248 (503)
T ss_dssp ----------------------------------------------------TSCCCTTCCCCTTE--------EEEEEC
T ss_pred ----------------------------------------------------CCCcCCcCCCCCcc--------eEeecC
Confidence 12678999999987 7877
Q ss_pred --CCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-CCcc
Q 004242 514 --PGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNR-NSPI 590 (766)
Q Consensus 514 --PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~-~~~~ 590 (766)
||.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...+
T Consensus 249 ~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~ 316 (503)
T 2id4_A 249 SGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDW 316 (503)
T ss_dssp SBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCC
T ss_pred CCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCc
Confidence 899999995331 1799999999999999999999999999999999999999999987543 1111
Q ss_pred ccCCCCCCCCCCCcccccCCccCccccCCCC
Q 004242 591 ADVGGSSDTPLATAFAFGSGHVDPESASDPG 621 (766)
Q Consensus 591 ~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 621 (766)
.....+ ......||+|+||+.+|++..
T Consensus 317 ~~~~~g----~~~~~~~G~G~vda~~Av~~a 343 (503)
T 2id4_A 317 RDSAMG----KKYSHRYGFGKIDAHKLIEMS 343 (503)
T ss_dssp EECSSS----SEEBTTTBTCBCCHHHHHHHH
T ss_pred eecCCC----CccCcccCCcEecHHHHHHHH
Confidence 111111 223568999999999999843
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=414.17 Aligned_cols=281 Identities=21% Similarity=0.215 Sum_probs=200.9
Q ss_pred ccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccC
Q 004242 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVD 211 (766)
Q Consensus 132 ~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~ 211 (766)
.|..+++|+||+|||||||||++||+|.++- ....+.+... .++. ..
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~---~dg~----~f 64 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPE---EDGT----RF 64 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCC---CC--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccC---CCCc----cc
Confidence 6888999999999999999999999997641 0000000000 0000 00
Q ss_pred CCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhC------CC
Q 004242 212 YRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVAD------GV 284 (766)
Q Consensus 212 ~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~ 284 (766)
...+.|..||||||||||+|+. .||||+|+|+.+|++++.+ ++.+++++||+|+++. ++
T Consensus 65 ~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~ 130 (546)
T 2qtw_B 65 HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGP 130 (546)
T ss_dssp ---CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSC
T ss_pred cCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCC
Confidence 0245688999999999999873 5999999999999998776 7888999999999974 89
Q ss_pred cEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-CcCCCCCceEEEecccCCcceeEEEEeCCCceEe
Q 004242 285 DVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-TVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363 (766)
Q Consensus 285 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~ 363 (766)
+|||||||+. +...+..++.++.++|++||+||||+|.... .++...|++|+|||++.+...
T Consensus 131 ~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------- 193 (546)
T 2qtw_B 131 LVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------- 193 (546)
T ss_dssp EEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------
T ss_pred eEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------
Confidence 9999999974 3456777888899999999999999997653 457788999999997532200
Q ss_pred eeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc
Q 004242 364 GSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL 443 (766)
Q Consensus 364 g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 443 (766)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecC
Q 004242 444 IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP 523 (766)
Q Consensus 444 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 523 (766)
...-..||++|+. |||+|||++|+++++
T Consensus 194 --------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~ 221 (546)
T 2qtw_B 194 --------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASS 221 (546)
T ss_dssp --------------------------------------------CEETTEECCBSTT--------CCEEEECSSEEEECT
T ss_pred --------------------------------------------ccccCCcCCCCCc--------ceEEecCccEEeecc
Confidence 0001128999984 599999999999986
Q ss_pred CCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcccc-CCCCCC----
Q 004242 524 ATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIAD-VGGSSD---- 598 (766)
Q Consensus 524 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~-~~~~~~---- 598 (766)
... ..|..++|||||||||||++|||+|++|+|+++|||++|++||.+.......+.. ...+.+
T Consensus 222 ~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~ 290 (546)
T 2qtw_B 222 DCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVA 290 (546)
T ss_dssp TST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEEC
T ss_pred CCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchh
Confidence 531 1799999999999999999999999999999999999999999865322110100 000000
Q ss_pred CCCCCcccccCCc--cCccccCC
Q 004242 599 TPLATAFAFGSGH--VDPESASD 619 (766)
Q Consensus 599 ~~~~~~~~~G~G~--id~~~Al~ 619 (766)
..+.....+|+|+ .++..+..
T Consensus 291 ~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 291 ALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CCCCTTCC--CCCEEEEEECCCC
T ss_pred ccCCcccccCCCcchhchhccCC
Confidence 0122455678888 77777764
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=386.34 Aligned_cols=229 Identities=33% Similarity=0.447 Sum_probs=194.0
Q ss_pred CccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccccc
Q 004242 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETV 210 (766)
Q Consensus 131 ~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~ 210 (766)
..|+.. +|+||+|||||||||++||+|.++ +...+.|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAS------------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSS-------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCC-------------
Confidence 356655 899999999999999999999654 222222221
Q ss_pred CCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCC------
Q 004242 211 DYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADG------ 283 (766)
Q Consensus 211 ~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g------ 283 (766)
...|..||||||||||+|+. .||||+|+|+.+|+++..+ +..++++++|+|+++++
T Consensus 63 ---~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~ 125 (279)
T 3f7m_A 63 ---TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCP 125 (279)
T ss_dssp ---SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCT
T ss_pred ---CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCC
Confidence 12378899999999999862 6999999999999998776 78899999999999886
Q ss_pred -CcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cCCCCCceEEEecccCCcceeEEEEeCCCce
Q 004242 284 -VDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST-VDNTAPWIMTVAASYTDRSFPAIVKLGNGHS 361 (766)
Q Consensus 284 -~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~~itVga~~~~~~~~~~~~~~~g~~ 361 (766)
++|||||||.. ..+.+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 126 ~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 186 (279)
T 3f7m_A 126 RRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS--------------- 186 (279)
T ss_dssp TEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred CCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC---------------
Confidence 89999999975 44667778889999999999999999977543 4778899999999642
Q ss_pred EeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcc
Q 004242 362 FEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGE 441 (766)
Q Consensus 362 ~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 441 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEee
Q 004242 442 ELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAA 521 (766)
Q Consensus 442 ~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 521 (766)
.+.++.||++||.. ||+|||++|+++
T Consensus 187 ----------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s~ 212 (279)
T 3f7m_A 187 ----------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTSITST 212 (279)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------CCCCCCCCCCCCCC--------eEEECCCCeEee
Confidence 12678999999965 999999999999
Q ss_pred cCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 004242 522 WPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLN 584 (766)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~ 584 (766)
++.. .|..++|||||||||||++|||+|++|+ ++++||++|++||++..
T Consensus 213 ~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 213 WIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp CGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred cCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 8654 7899999999999999999999999999 99999999999999753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=414.59 Aligned_cols=295 Identities=22% Similarity=0.232 Sum_probs=199.9
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|.++++|+||+|||||||||++||||.++- ..+.++|..+.+
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~~-------- 104 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGSD-------- 104 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSSS--------
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCCC--------
Confidence 3568999999999999999999999999997640 112223322210
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHH-HHHHhCCCcE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAI-DKAVADGVDV 286 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~dV 286 (766)
++....|..+|||||||||||.. ++ .| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|
T Consensus 105 --dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I 173 (600)
T 3hjr_A 105 --DPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRV 173 (600)
T ss_dssp --CCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSE
T ss_pred --CCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCE
Confidence 11223457899999999999863 21 12 27999999999999998776 6777877766 6778889999
Q ss_pred EEeccCCCCC-CCcc-----cHHHHHHHH--HHhCCCEEEEecCCCCCCCCC----------------------cCCCCC
Q 004242 287 LSLSLGGSSR-PYYR-----DTVAIASFG--ATQSGVFVSCSAGNSGPSIST----------------------VDNTAP 336 (766)
Q Consensus 287 In~SlG~~~~-~~~~-----~~~~~a~~~--a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p 336 (766)
||+|||.... +... ..+..++.. ...+|+++|+||||.+..... .....+
T Consensus 174 ~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~ 253 (600)
T 3hjr_A 174 FNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNF 253 (600)
T ss_dssp EEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSS
T ss_pred EecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccC
Confidence 9999997543 1111 112222222 236899999999997642110 001122
Q ss_pred ceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCch
Q 004242 337 WIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSR 416 (766)
Q Consensus 337 ~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~ 416 (766)
++|+|||.
T Consensus 254 ~~IsVgA~------------------------------------------------------------------------ 261 (600)
T 3hjr_A 254 WNLVVSAL------------------------------------------------------------------------ 261 (600)
T ss_dssp SEEEEEEE------------------------------------------------------------------------
T ss_pred cceEEeee------------------------------------------------------------------------
Confidence 23333332
Q ss_pred hhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccC
Q 004242 417 TGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSS 496 (766)
Q Consensus 417 ~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs 496 (766)
...+.++.||+
T Consensus 262 ---------------------------------------------------------------------~~~g~~a~yS~ 272 (600)
T 3hjr_A 262 ---------------------------------------------------------------------NADGVRSSYSS 272 (600)
T ss_dssp ---------------------------------------------------------------------CTTSSBCTTCC
T ss_pred ---------------------------------------------------------------------cCCCCEeeccc
Confidence 22347889999
Q ss_pred CCCCCCCCCcccCcEEeCCCcEE--------eecCCCCCCC-------------CCCCCccccceEEeecccchhhhhhh
Q 004242 497 RGPSLVGHDVIKPDVTAPGVNIL--------AAWPATTSPS-------------MLKSDDRRVLFNIISGTSMSCPHVSG 555 (766)
Q Consensus 497 ~Gp~~~~~~~lKPDI~APG~~I~--------sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG 555 (766)
+|+.. +++|||.++. ...++..... ....+.....|..++|||||||||||
T Consensus 273 ~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAG 344 (600)
T 3hjr_A 273 VGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSG 344 (600)
T ss_dssp BCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHH
T ss_pred CCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHH
Confidence 99987 8999987632 2222110000 00011123468899999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcccc--------------------CCCCCCCCCCCcccccCCccCcc
Q 004242 556 LAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIAD--------------------VGGSSDTPLATAFAFGSGHVDPE 615 (766)
Q Consensus 556 ~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~G~G~id~~ 615 (766)
++|||+|++|+|+++|||++|++||++++....|+.. +..| ......||+|+||+.
T Consensus 345 vaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG----~~~s~~yGfG~vDA~ 420 (600)
T 3hjr_A 345 AMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAG----MWFSPTYGFGLIDVN 420 (600)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTS----CEEBTTTBTCBCCHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCC----ceEccccCCceecHH
Confidence 9999999999999999999999999999876655321 1111 122457999999999
Q ss_pred ccCCCC
Q 004242 616 SASDPG 621 (766)
Q Consensus 616 ~Al~~~ 621 (766)
+|++.+
T Consensus 421 ~aV~~A 426 (600)
T 3hjr_A 421 KALELA 426 (600)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998743
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=255.44 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=78.0
Q ss_pred ccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh---CCCcEEEeccCCCCCCC---cccHHHHHHHHHHhCCCEEEEe
Q 004242 247 AAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA---DGVDVLSLSLGGSSRPY---YRDTVAIASFGATQSGVFVSCS 320 (766)
Q Consensus 247 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~A 320 (766)
+.||||+|+|+.|++. ....+++++|+||++ ++++|||||||...... +.+.+..++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999974 246789999999998 79999999999864321 2345666777888999999999
Q ss_pred cCCCCCCC--------CCcCCCCCceEEEecccC
Q 004242 321 AGNSGPSI--------STVDNTAPWIMTVAASYT 346 (766)
Q Consensus 321 AGN~g~~~--------~~~~~~~p~~itVga~~~ 346 (766)
|||+|... ..++..+||+++||+++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999643 346678999999999864
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-22 Score=217.72 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=81.2
Q ss_pred cccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcEEEeccCCCCC----CCcccHHHHHHHHHHhCCCEEEEecC
Q 004242 248 AGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVLSLSLGGSSR----PYYRDTVAIASFGATQSGVFVSCSAG 322 (766)
Q Consensus 248 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAG 322 (766)
..+||+++++.|++.+..++..++++++|+||++ ++++|||||||.... ..+.+.+..++..|..+||+||+|+|
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4579999999999987655778899999999998 899999999998542 12345667777788899999999999
Q ss_pred CCCCCCC-------------CcCCCCCceEEEecccC
Q 004242 323 NSGPSIS-------------TVDNTAPWIMTVAASYT 346 (766)
Q Consensus 323 N~g~~~~-------------~~~~~~p~~itVga~~~ 346 (766)
|+|...+ .++..+||+++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997542 45678899999999864
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=123.70 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=63.5
Q ss_pred ccccCceEEEeeeecCCCCCHHHHHHHHHHHH--hCCCcEEEeccCCCCCC---CcccHHHHHHHHHHhCCCEEEEecCC
Q 004242 249 GMRYTSRIAAYKACWSLGCSSSDILAAIDKAV--ADGVDVLSLSLGGSSRP---YYRDTVAIASFGATQSGVFVSCSAGN 323 (766)
Q Consensus 249 GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~--~~g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN 323 (766)
+++++..++.|-.-+. ......++..+++.. .+-.+|||+|||..... .+.+.+......+..+||.|++|+||
T Consensus 263 a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD 341 (544)
T 3edy_A 263 SAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 341 (544)
T ss_dssp HHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4555556555543211 112234555454443 34678999999986442 23344556666788999999999999
Q ss_pred CCCCC----------CCcCCCCCceEEEecccC
Q 004242 324 SGPSI----------STVDNTAPWIMTVAASYT 346 (766)
Q Consensus 324 ~g~~~----------~~~~~~~p~~itVga~~~ 346 (766)
+|... ..++..+||+++||+++.
T Consensus 342 ~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 342 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp STTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 98642 245678999999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-10 Score=101.61 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccC
Q 004242 22 GKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETV 101 (766)
Q Consensus 22 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~ 101 (766)
..+++|||+|++...+.. ...|++|+.+++.+. ..+.+++|+|++.|+||+++|+++++++|+++
T Consensus 35 ~ip~~YIV~lk~~~~~~~--~~~h~~~l~s~~~~~-------------~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~ 99 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHLSQ--SERTARRLQAQAARR-------------GYLTKILHVFHGLLPGFLVKMSGDLLELALKL 99 (114)
T ss_dssp EEEEEEEEEECTTCCHHH--HHHHHHHHHHHHHHT-------------TCCCEEEEEECSSSSEEEEECCGGGHHHHHTS
T ss_pred CCCCcEEEEECCCCCHHH--HHHHHHHHHHHhhhc-------------ccCCceEEEecccceEEEEEcCHHHHHHHHcC
Confidence 357899999998775444 456788888876652 24679999999999999999999999999999
Q ss_pred CCeEEEEccccccc
Q 004242 102 DGFLSATPDELLTL 115 (766)
Q Consensus 102 p~V~~v~~~~~~~~ 115 (766)
|+|.+|+|++.++.
T Consensus 100 P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 100 PHVDYIEEDSSVFA 113 (114)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCccEEEeCceEec
Confidence 99999999998764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-09 Score=87.56 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccC
Q 004242 22 GKQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETV 101 (766)
Q Consensus 22 ~~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~ 101 (766)
..+++|||+||++..... ...++++ ..+.++.|+|++ |+||+++++++++++|+++
T Consensus 6 ~i~~~YIV~~k~~~~~~~--------~~~~~~~---------------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~ 61 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKSCA--------KKEDVIS---------------EKGGKLQKCFKY-VDAASATLNEKAVEELKKD 61 (80)
T ss_dssp --CCEEEEEECTTCCSHH--------HHHHHHH---------------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCChHH--------HHHHHHH---------------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhC
Confidence 467999999998765321 1112221 245799999998 9999999999999999999
Q ss_pred CCeEEEEcccccccccCC
Q 004242 102 DGFLSATPDELLTLHTTY 119 (766)
Q Consensus 102 p~V~~v~~~~~~~~~~~~ 119 (766)
|+|.+|||++.++++++.
T Consensus 62 p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 62 PSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TTEEEEEECCEEEECCC-
T ss_pred CCccEEEeCcEEEEeeec
Confidence 999999999999887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.74 E-value=6.7e-09 Score=94.06 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccCC
Q 004242 23 KQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVD 102 (766)
Q Consensus 23 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p 102 (766)
.+++|||+||++..... ...+.+++.+.+.+. ..+.++.|+|++.|+||+++++++++++|+++|
T Consensus 46 Ip~~YIV~~K~~~~~~~--~~~~~~~l~~~~~~r-------------~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p 110 (124)
T 2qtw_A 46 LPGTYVVVLKEETHLSQ--SERTARRLQAQAARR-------------GYLTKILHVFHGLLPGFLVKMSGDLLELALKLP 110 (124)
T ss_dssp EEEEEEEEECTTCCHHH--HHHHHHHHHHHHHHT-------------TCCCEEEEEECSSSCEEEEECCGGGHHHHHTST
T ss_pred CCCCEEEEECCCCCHHH--HHHHHHHHHHHHhhc-------------ccCCceEEEecccceEEEEEcCHHHHHHHHcCC
Confidence 57899999998775433 222333333222211 145799999999999999999999999999999
Q ss_pred CeEEEEccccccc
Q 004242 103 GFLSATPDELLTL 115 (766)
Q Consensus 103 ~V~~v~~~~~~~~ 115 (766)
+|.+|++++.++.
T Consensus 111 ~V~~VE~D~~v~a 123 (124)
T 2qtw_A 111 HVDYIEEDSSVFA 123 (124)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCcEEEeCceEec
Confidence 9999999987754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=92.26 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=74.8
Q ss_pred CCccccCCCCCCCc-------ccceEEEEecCC-CchhhhhHHHHhcCceEEEEecCCCCcccc----cccCccccEEEE
Q 004242 388 GAEYCINGSLNRKL-------VKGKIVICQRGL-NSRTGKGEQVKLAGGAGMLLLNSDKEGEEL----IADAHVLPAATL 455 (766)
Q Consensus 388 ~~~~c~~~~~~~~~-------~~gkiv~~~~g~-~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~----~~~~~~~p~~~v 455 (766)
....|.+....... .+++|+|++||. |.|.+|..+++++||.++|++|+...+... ......||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 56789887643222 478999999999 999999999999999999999985332211 122357999999
Q ss_pred cHhhHHHHHHHHhcCCCCeEEEEece
Q 004242 456 GASAGKAVKKYVNSTKRPTASIVFKG 481 (766)
Q Consensus 456 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 481 (766)
+..+|+.|++++..+...+++|.+..
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999888777776654
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=77.05 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=52.9
Q ss_pred ceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEec-ceeeEEEEEeCHHHHhhhccC--
Q 004242 25 TTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYE-NAISGFSAKLSTKQLKSLETV-- 101 (766)
Q Consensus 25 ~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~l~~~~~~~L~~~-- 101 (766)
+.|||.||++..... ...+..+ +.. .+.++.|+|+ ..|+||+++++++.+++|+++
T Consensus 3 ~sYIV~lk~~~~~~~--~~~~~~~----~~~---------------~gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~ 61 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDK--IRETKDE----VIA---------------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQG 61 (76)
T ss_dssp EEEEEEECTTCCHHH--HHHHHHH----HHH---------------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBT
T ss_pred ceEEEEECCCCCHHH--HHHHHHH----HHh---------------hCCceEEEEEcCceeEEEEEcCHHHHHHHHhcCC
Confidence 689999998765332 1122222 211 2357899994 799999999999999999999
Q ss_pred CCeEEEEccccccc
Q 004242 102 DGFLSATPDELLTL 115 (766)
Q Consensus 102 p~V~~v~~~~~~~~ 115 (766)
|.|.+||+++.+++
T Consensus 62 p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 62 DLIDSIEEDHVAHA 75 (76)
T ss_dssp TTEEEEEECCEEEC
T ss_pred CCCcEEcCCcEEeC
Confidence 89999999987754
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00024 Score=56.36 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=39.8
Q ss_pred CCCcEEEEecceeeEEEEEeCHHHHhhhccCCCeEEEEcccccc
Q 004242 71 TPPQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLT 114 (766)
Q Consensus 71 ~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~v~~~~~~~ 114 (766)
.+.++.|+|. .+++++++|+++.+++|+++|+|++|++|...+
T Consensus 21 ~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 21 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 5789999997 799999999999999999999999999998754
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.013 Score=64.47 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=66.0
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccc--cc-ccCcc
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEE--LI-ADAHV 449 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~-~~~~~ 449 (766)
...-++|+.+.+. ...+...+++||||++.++.|.+.+|..+++++||.|+|++++...... .. .....
T Consensus 92 ~v~a~lv~~~~G~--------~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~ 163 (421)
T 2ek8_A 92 DVTAELVYVGLGT--------TADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASF 163 (421)
T ss_dssp EEEEEEEECTTCC--------TTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTC
T ss_pred CcceEEEECCCCC--------hhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCC
Confidence 3455677755431 1122234899999999999999999999999999999999998643111 11 13467
Q ss_pred ccEEEEcHhhHHHHHHHHh
Q 004242 450 LPAATLGASAGKAVKKYVN 468 (766)
Q Consensus 450 ~p~~~v~~~~g~~l~~~~~ 468 (766)
+|.+.++..+++.|.+++.
T Consensus 164 IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 164 VAAVGITKQEGDALAANLR 182 (421)
T ss_dssp CEEEEECHHHHHHHHHHHH
T ss_pred ccEEEeCHHHHHHHHHHhh
Confidence 9999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.034 Score=61.55 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=70.6
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCc---------hhhh----hHHHHhcCceEEEEecCCCC
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNS---------RTGK----GEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~~~~~~ 439 (766)
...-++|+... .+.|.. ....+++|||||+.++.|. +..| ..+|.++||.|+|++++...
T Consensus 105 ~vta~lV~v~~-----~~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~ 177 (444)
T 3iib_A 105 GLSATIVRFDT-----LQDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTD 177 (444)
T ss_dssp CEEEEEEEESS-----HHHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSC
T ss_pred CeEEEEEecCC-----HHHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCc
Confidence 45677887542 223332 2356899999999998874 3444 35689999999999986543
Q ss_pred cc--------cccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEec
Q 004242 440 GE--------ELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFK 480 (766)
Q Consensus 440 ~~--------~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~ 480 (766)
.. ........+|++.++..+++.|+..+..+...++.+...
T Consensus 178 ~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 178 HDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp CSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEE
T ss_pred ccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 21 111234579999999999999999998876666665543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.027 Score=64.87 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=64.4
Q ss_pred CceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc------------
Q 004242 373 SKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG------------ 440 (766)
Q Consensus 373 ~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~------------ 440 (766)
....++||.+.+... .. ..+. .+++|||+|+.+|.|.+.+|..+|+++||.|+|++++....
T Consensus 107 ~v~g~lV~vg~G~~~---D~--~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 107 TVTGKLVHANFGTKK---DF--EDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp EEEECEEECTTCCHH---HH--HTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred ceEEEEEEecCCChh---hH--HHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 345678887643210 00 0111 58999999999999999999999999999999999876421
Q ss_pred ------cccc----------------ccCccccEEEEcHhhHHHHHHHHh
Q 004242 441 ------EELI----------------ADAHVLPAATLGASAGKAVKKYVN 468 (766)
Q Consensus 441 ------~~~~----------------~~~~~~p~~~v~~~~g~~l~~~~~ 468 (766)
+... .....+|+..|+..+++.|...+.
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0000 012368999999999999987764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.022 Score=66.32 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=56.8
Q ss_pred CCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC-------------------------------cccccc--
Q 004242 399 RKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE-------------------------------GEELIA-- 445 (766)
Q Consensus 399 ~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~-------------------------------~~~~~~-- 445 (766)
..+++|||+|+++|.|.+.+|..+|+++||.|+|++++..+ |+...+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 35799999999999999999999999999999999986321 110000
Q ss_pred ---------------cCccccEEEEcHhhHHHHHHHHhc
Q 004242 446 ---------------DAHVLPAATLGASAGKAVKKYVNS 469 (766)
Q Consensus 446 ---------------~~~~~p~~~v~~~~g~~l~~~~~~ 469 (766)
....||++.|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 124789999999999999998764
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.34 Score=43.07 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCCeEEEEEEE-CCceeEEeE
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNESFGSLTWV-SGKYAVKSP 760 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~-~~~~~v~~p 760 (766)
.+.+.++.|+|+|+.+..|+.....| +++.|..-++.+ |++..++|+|.+... +.+.+.|... ++...+.++
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L~p-g~~~~i~V~F~P~~~--g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTLNV-GESMQLEVEFEPQSV--GDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEECT-TCEEEEEEEECCSSS--BCCCCBCEEEESSSCEECCE
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEECC-CCEEEEEEEEEcCCC--ccEEEEEEEEECCCCEEEEE
Confidence 47888999999999888887765433 778999999987 999999999998631 2255655544 443444433
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.25 E-value=0.21 Score=61.37 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEEEecccCCCCCCCc
Q 004242 135 ATNLAKDVIVGVIDTGIWPEHIAFQ 159 (766)
Q Consensus 135 ~~~~G~gv~VaVIDtGid~~Hp~f~ 159 (766)
-.|.|+||+|||+|||||+.+|.|.
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCCccEEEEEeCCCCCCCCcce
Confidence 3678999999999999999999985
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=84.30 E-value=6.5 Score=34.41 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=45.1
Q ss_pred eeEEEEEEEEecCCCCeEEEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEec
Q 004242 682 MSLEYERSVTNVGTSYCTYAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLR 738 (766)
Q Consensus 682 ~~~~~~rtvtn~g~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (766)
-.-.++..+.|....+.+|.+++...+|+.+. .|..+++.+ ++..++.|.+.++.
T Consensus 31 I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 31 VENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEEECG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEEECh
Confidence 45677889999999999999999987776553 356688877 99999999999865
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=0.87 Score=50.12 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCC
Q 004242 486 NPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPA 524 (766)
Q Consensus 486 ~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 524 (766)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 3456899999999865 999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 766 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 3e-42 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-13 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-06 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 7e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-07 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-11 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 3e-04 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-10 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-09 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 9e-05 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 8e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 0.002 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 5e-04 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 8e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 157 bits (397), Expect = 3e-42
Identities = 88/513 (17%), Positives = 147/513 (28%), Gaps = 102/513 (19%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
L D+ A + + +ID+G H N + G
Sbjct: 16 LSDSQ--AGNRTICIIDSGYDRSHNDLNA--------------------------NNVTG 47
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
G ++ P + HGTH A T A N + G+ + A
Sbjct: 48 TNNSGTG------------NWYQPGNNNAHGTHVAGTIAAI-ANNEGVVGVMPNQNA--- 91
Query: 252 YTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGAT 311
I K G S L A + +++ +
Sbjct: 92 ---NIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYN 148
Query: 312 QSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGK 371
+ + +AGN+G S + + +M+VAA ++ A + + G
Sbjct: 149 NGVLLI-AAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEA--- 204
Query: 372 GSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGM 431
T V + +V R S T A G
Sbjct: 205 --------ILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGA 256
Query: 432 LLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPA-PV 490
L + + + + V + I A +
Sbjct: 257 LAECTVNGTSFSCGNMAN----------KICLVERVGNQGSSYPEINSTKACKTAGAKGI 306
Query: 491 IASFSSRGPSLVGHDVI--KPDVTAPGVNILAAWP----ATTSPSMLKSDDRRVLFNIIS 544
I +S P L ++ D+T P V++ A A S S+ + +
Sbjct: 307 IVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYN 366
Query: 545 GTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATA 604
GTSM+ PHVSG+A L+ S H + S + +++AL TA L+
Sbjct: 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRD--------------- 411
Query: 605 FAFGSGHVDPESASDPGLIYDIATEDYLDYLCS 637
G G ++ +A YLD C+
Sbjct: 412 NQTGYGMINAVAAK-----------AYLDESCT 433
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 70.8 bits (172), Expect = 3e-13
Identities = 39/212 (18%), Positives = 59/212 (27%), Gaps = 27/212 (12%)
Query: 509 PDVTAPGVNILAAWPATTSPSMLKSDDRRVL-----FNIISGTSMSCPHVSGLAALLKSV 563
V APGV IL+ P S ++ ++ GTSM+ PHV+G+ A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 564 HEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLI 623
+ I+ L TA+ N G G V ++A L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNGWD---------------HDTGYGLVKLDAALQGPLP 442
Query: 624 YDIATEDYLDYLCSLNYTSLQLALFAGGNFTCPNPSAFHPGKLNYPSFAVNFKGNVKNMS 683
E++ + +F + G F G
Sbjct: 443 TQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSG------ 496
Query: 684 LEYERSVTNVGTSYCTYAVKVEEPNGVLVTIT 715
Y+ V A E I
Sbjct: 497 -TYDIFVGGPDHWDRALAPYDGESIPGGYAIA 527
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 49.7 bits (117), Expect = 1e-06
Identities = 39/285 (13%), Positives = 63/285 (22%), Gaps = 65/285 (22%)
Query: 73 PQILYAYENAISGFSAKLSTKQLKSLETVDGFLSATPDELLTLHTTYSPHFLGLESGIGL 132
I Y + + ++ L + Y G+
Sbjct: 87 KGIRYVEPSYKR------ELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEA 140
Query: 133 WDATNLA------KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCN 186
T ++IV V+DTG+ H + +
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIA---------------------- 178
Query: 187 NKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGK 246
G R F E GTH A T A
Sbjct: 179 ----GYRPAF---------DEELPAGTDSSYGGSAGTHVAGTIAAKK---------DGKG 216
Query: 247 AAGMRYTSRIAAYKACWSLGC-------SSSDILAAIDKAVADGVDVLSLSLGGSSRPYY 299
G+ ++I + A I A G V++ S GG Y
Sbjct: 217 IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYT 276
Query: 300 RDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAAS 344
+ V + + + P ++ VAA
Sbjct: 277 MKEAFDYAMEHGVVMVVSAGNNTSDSHHQYP--AGYPGVIQVAAL 319
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 64.2 bits (155), Expect = 7e-12
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 39/127 (30%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFS G D+ APGVN+ + +P +T S+ +GTSM+
Sbjct: 180 RASFSQYGAG--------LDIVAPGVNVQSTYPGSTYASL-------------NGTSMAT 218
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G AAL+K + WS I++ L TA T L + +GSG
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTA------------------TSLGSTNLYGSG 260
Query: 611 HVDPESA 617
V+ E+A
Sbjct: 261 LVNAEAA 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 46/229 (20%), Positives = 70/229 (30%), Gaps = 56/229 (24%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+ V V V+DTGI H
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIST-HPDLN-------------------------------- 42
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
+ G + S +D GHGTH A T A G+
Sbjct: 43 ----------IRGGASFVPGEPSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVA 83
Query: 252 YTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
++ + A K + G S S I ++ A +G+ V + P T+ A A
Sbjct: 84 PSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVAN---LSLGSPSPSATLEQAVNSA 140
Query: 311 TQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359
T GV V ++GNSG + M V A+ + + + + G G
Sbjct: 141 TSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAG 189
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 63.4 bits (153), Expect = 1e-11
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 31/128 (24%)
Query: 490 VIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMS 549
V A S+ + + +V APG + + +P T + ++GTSM+
Sbjct: 176 VGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNT-------------YATLNGTSMA 222
Query: 550 CPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGS 609
PHV+G AAL+ S H + S + +++ L +TA T L ++F +G
Sbjct: 223 SPHVAGAAALILSKHPNLSASQVRNRLSSTA------------------TYLGSSFYYGK 264
Query: 610 GHVDPESA 617
G ++ E+A
Sbjct: 265 GLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 51.1 bits (121), Expect = 1e-07
Identities = 61/308 (19%), Positives = 93/308 (30%), Gaps = 77/308 (25%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
+ +V V V+DTGI H
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------------- 43
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
VVG + D GHGTH A T A L +
Sbjct: 44 ----------VVGGASFVAGEAYNTDGNGHGTHVAGTVAALDNTTGVLG---------VA 84
Query: 252 YTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
+ + A K S G S S I++ I+ A +G+DV++ + A A
Sbjct: 85 PSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVIN---MSLGGASGSTAMKQAVDNA 141
Query: 311 TQSGVFVSCSAGNSGPSISTV----DNTAPWIMTVAASYTDRSF---------PAIVKLG 357
GV V +AGNSG S ST ++ V A ++ + ++ G
Sbjct: 142 YARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPG 201
Query: 358 NGHSF---EGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIV--ICQRG 412
G + S P V AG + + +L+ V+ ++ G
Sbjct: 202 AGVYSTYPTNTYATLNGTSMASPHV----AGAAALILSKHPNLSASQVRNRLSSTATYLG 257
Query: 413 LNSRTGKG 420
+ GKG
Sbjct: 258 SSFYYGKG 265
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.4 bits (153), Expect = 1e-11
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 39/127 (30%)
Query: 491 IASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSC 550
ASFSS GP L DV APGV+I + P + +GTSM+
Sbjct: 186 RASFSSVGPEL--------DVMAPGVSIQSTLPGNKYGAY-------------NGTSMAS 224
Query: 551 PHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSG 610
PHV+G AAL+ S H +W+ ++S+L T T L +F +G G
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTT------------------TKLGDSFYYGKG 266
Query: 611 HVDPESA 617
++ ++A
Sbjct: 267 LINVQAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 50/220 (22%), Positives = 72/220 (32%), Gaps = 56/220 (25%)
Query: 132 LWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIG 191
L +V V VID+GI H + G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG----------------------------- 46
Query: 192 ARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMR 251
G + +D HGTH VA G+
Sbjct: 47 ------------GASMVPSETNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVA 85
Query: 252 YTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGA 310
++ + A K + G S I+ I+ A+A+ +DV+++SLGG P + A A
Sbjct: 86 PSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAAVDKA 142
Query: 311 TQSGVFVSCSAGNSGPSI--STVDNTAPWIMTVAASYTDR 348
SGV V +AGN G S STV + +A D
Sbjct: 143 VASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS 182
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 508 KPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDW 567
+++APG ++ + W +N ISGTSM+ PHVSGLAA + + +
Sbjct: 224 DIEISAPGSSVYSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 568 STAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVD 613
S ++S L A ++ D+ G + +A G G
Sbjct: 271 SNTQLRSNLQERAKSV--------DIKGGYGAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQD 160
+T + + V+DTG+ H +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 59.2 bits (142), Expect = 4e-10
Identities = 53/238 (22%), Positives = 77/238 (32%), Gaps = 55/238 (23%)
Query: 108 TPDELLTLHTTYSPHFLGLESGIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVP 167
TP++ Y P + WD T + + VIDTG+ H
Sbjct: 2 TPNDTYYQGYQYGPQNTYTDY---AWDVTKGSSGQEIAVIDTGVDYTHPDLDG------- 51
Query: 168 SRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTAS 227
V+ + + P D HGTH A
Sbjct: 52 ---------------------------------KVIKGYDFVDNDYDPMDLNNHGTHVAG 78
Query: 228 TAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDV 286
AA + G+A +RI A +A G + SDI AI A G +V
Sbjct: 79 IAAAETNNATGIAGMAPN--------TRILAVRALDRNGSGTLSDIADAIIYAADSGAEV 130
Query: 287 LSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAAS 344
++LSLG + A A G V +AGN+G S + + ++ V A
Sbjct: 131 INLSLGCDCHTTTLEN---AVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAV 185
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDT 599
+ +SGTSM+ PHV+GLAALL S + I+ A+ TA ++ +
Sbjct: 219 YAYMSGTSMASPHVAGLAALLASQG--RNNIEIRQAIEQTADKISGTGTY---------- 266
Query: 600 PLATAFAFGSGHVDPESA 617
F G ++ +A
Sbjct: 267 -------FKYGRINSYNA 277
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 503 GHDVIKPDVTAPGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKS 562
IKPDV APG IL+A + S ++ + + GTSM+ P V+G A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSK-YAYMGGTSMATPIVAGNVAQLRE 270
Query: 563 VH-----EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESA 617
+ +K+AL+ A + + G G V + +
Sbjct: 271 HFVKNRGITPKPSLLKAALIAGA---ADIGLGYPN------------GNQGWGRVTLDKS 315
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 35/212 (16%), Positives = 58/212 (27%), Gaps = 43/212 (20%)
Query: 140 KDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGY 199
+ IV V DTG+ K+ A
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM---------------------HEAFRGKITALYAL---- 56
Query: 200 ESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAY 259
+ D GHGTH A + GN N A +
Sbjct: 57 ----------GRTNNANDTNGHGTHVAGSVLGNGSTN--------KGMAPQANLVFQSIM 98
Query: 260 KACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSC 319
+ LG S++ +A + G + + S G + Y ++ + +
Sbjct: 99 DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILF 158
Query: 320 SAGNSGPSISTVDNTAPWIMTVAASYTDRSFP 351
+AGN GP+ T+ + T+ P
Sbjct: 159 AAGNEGPNGGTISAPGTAKNAITVGATENLRP 190
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (133), Expect = 8e-09
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 530 MLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSP 589
++ +D R+ +GTS S P +G+ AL +++ + ++ ++ T+ +
Sbjct: 243 IVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADD 302
Query: 590 IADVGGSSDTPLATAFAFGSGHVDPESA 617
A G + ++G G +D +
Sbjct: 303 WATNGV----GRKVSHSYGYGLLDAGAM 326
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 0.002
Identities = 24/209 (11%), Positives = 44/209 (21%), Gaps = 37/209 (17%)
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
W ++V ++D GI H N
Sbjct: 28 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG--------------------------NYDP 61
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
GA D + H A N
Sbjct: 62 GASFDVNDQ---------DPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNAR 112
Query: 251 RYTSRIAAYKACWSLGCSSSDILA--AIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASF 308
R+ + ++ S + + + G + ++ G +R S
Sbjct: 113 IGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 172
Query: 309 GATQSGVFVSCSAGNSGPSISTVDNTAPW 337
G G ++GN G + +
Sbjct: 173 GRGGLGSIFVWASGNGGREHDSCNCDGYT 201
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDT 599
N GTS + P +G+ LL + + + ++ + +A L
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 600 PLATAFAFGSGHVDPESA 617
+ +G G +D
Sbjct: 317 Y---SHRYGFGKIDAHKL 331
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 28/218 (12%), Positives = 48/218 (22%), Gaps = 54/218 (24%)
Query: 131 GLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLI 190
LW V+ ++D G+ E+ +D
Sbjct: 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAE------------------------- 71
Query: 191 GARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGM 250
G + + P+ H A N F
Sbjct: 72 -------------GSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGVGYNAK 118
Query: 251 RYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSS---------RPYYRD 301
RI + D A++ + D D+ S S G + +
Sbjct: 119 ISGIRILSGDITT------EDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKA 171
Query: 302 TVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIM 339
V + G G ++GN G +
Sbjct: 172 LVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNS 209
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 540 FNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSP 589
ISGTSM+ PHV+GLAA L ++ + A+ + TA + N P
Sbjct: 217 TRSISGTSMATPHVAGLAAYLMTLGKTT-AASACRYIADTANKGDLSNIP 265
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 41/219 (18%), Positives = 67/219 (30%), Gaps = 50/219 (22%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
WD + ++DTG+ H
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDLAG-------------------------------- 50
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
VVG + + +P++ GHGTH A AA AG
Sbjct: 51 --------KVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAV--------TNNSTGIAGTAP 94
Query: 253 TSRIAAYKACWSLGCSSS-DILAAIDKAVADGVDVLSLSLGGSSRPYYRDTVAIASFGAT 311
+ I A + + G + + I A G V+SLSLGG+ ++
Sbjct: 95 KASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKG 154
Query: 312 QSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSF 350
V + +AGN+ P+ + A + + + SF
Sbjct: 155 SVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSF 193
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 544 SGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLAT 603
SGTSM+ PHV+G+A LL S + I++A+ TA ++ +
Sbjct: 222 SGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTADKISGTGT--------------- 264
Query: 604 AFAFGSGHVDPESA 617
+ G V+ A
Sbjct: 265 --YWAKGRVNAYKA 276
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 40.1 bits (92), Expect = 8e-04
Identities = 29/216 (13%), Positives = 53/216 (24%), Gaps = 49/216 (22%)
Query: 133 WDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGA 192
+ + + +I G + +
Sbjct: 17 FPEGLDGQGQCIAIIALGGGYDETSLAQ-------------------------------- 44
Query: 193 RAFFKGYESVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY 252
+F ++ G G L A +
Sbjct: 45 --YFASLGVSAPQV-------VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAP 91
Query: 253 TSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLSLSLGGSSRPY---YRDTVAIASFG 309
++IA Y A + + I A+ ++S+S GG + + A
Sbjct: 92 GAKIAVYFAPNTDAGFLNAITTAVH-DPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLD 150
Query: 310 ATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASY 345
A GV V +AG+SG + D A+ Y
Sbjct: 151 AAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPY 186
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.76 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.5 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.45 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.94 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.29 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.6e-52 Score=489.81 Aligned_cols=364 Identities=23% Similarity=0.239 Sum_probs=262.8
Q ss_pred CCceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHH----Hh--
Q 004242 23 KQTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQ----LK-- 96 (766)
Q Consensus 23 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~----~~-- 96 (766)
.+++|||+||+... .++++++. ..++++.+. .++.+.++++... .+
T Consensus 30 ~~~~~iV~~k~~~~------------~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (671)
T d1r6va_ 30 TEGKILVGYNDRSE------------VDKIVKAV---------------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKI 81 (671)
T ss_dssp CTTEEEEEESSHHH------------HHHHHHHH---------------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHH
T ss_pred CCCeEEEEECCccC------------HHHHHHhc---------------CCEEEEEec-ccceEEEEcCchhHHHHHHHH
Confidence 57899999986432 22233322 356666666 4667777776422 22
Q ss_pred hhccCCCeEEEEcccccccccC----C-----------------------CCcccCCccC--CCccccCCCCCCcEEEEE
Q 004242 97 SLETVDGFLSATPDELLTLHTT----Y-----------------------SPHFLGLESG--IGLWDATNLAKDVIVGVI 147 (766)
Q Consensus 97 ~L~~~p~V~~v~~~~~~~~~~~----~-----------------------s~~~~g~~~~--~~~~~~~~~G~gv~VaVI 147 (766)
++..+|+|++|+|+...++... . ....|+++.+ ...|...++|+||+||||
T Consensus 82 ~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaVi 161 (671)
T d1r6va_ 82 KALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVV 161 (671)
T ss_dssp TTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEE
T ss_pred HHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEE
Confidence 3346899999999865543210 0 0012344332 233444578999999999
Q ss_pred ecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCCCCCCCCCCchhHHH
Q 004242 148 DTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYRSPRDAQGHGTHTAS 227 (766)
Q Consensus 148 DtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~~~~d~~gHGThVAg 227 (766)
|||||++||+|.++ ++..+++..+.+. ....++.|..||||||||
T Consensus 162 DtGvd~~Hpdl~~~---------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAG 206 (671)
T d1r6va_ 162 DTGVDGTHPDLEGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAG 206 (671)
T ss_dssp ESCCBTTSGGGTTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHH
T ss_pred cCCcCCCChhhcCC---------------------------cccCccccccCCC--------CCCCcCcccCCCCccccc
Confidence 99999999999764 1112222111100 011245678899999999
Q ss_pred hhccccccccccccccCCcccccccCceEEEeeeecC------CC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCcc
Q 004242 228 TAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWS------LG-CSSSDILAAIDKAVADGVDVLSLSLGGSSRPYYR 300 (766)
Q Consensus 228 i~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 300 (766)
||||..++ . .+.||||+|+|+++|++++ .+ ....++++||+||+++|++|||||||+.. ..
T Consensus 207 iiaa~~~~--------~-g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~ 274 (671)
T d1r6va_ 207 TIAAKKDG--------K-GIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YS 274 (671)
T ss_dssp HHHCCCSS--------S-SCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CC
T ss_pred eeeeeccc--------c-ceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CC
Confidence 99997422 1 1379999999999999964 23 56778999999999999999999998753 33
Q ss_pred cHHHHHHHHHHhCCCEEEEecCCCCCCC-CCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeeeccCCCCceeeeE
Q 004242 301 DTVAIASFGATQSGVFVSCSAGNSGPSI-STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSLYSGKGSKQLPLV 379 (766)
Q Consensus 301 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~lv 379 (766)
..+..++..|.++|+++|+||||++... ..++...|++|+|||++...
T Consensus 275 ~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------- 323 (671)
T d1r6va_ 275 YTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------------------------------- 323 (671)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET-------------------------------
T ss_pred hHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC-------------------------------
Confidence 5666777789999999999999998765 46778899999999964211
Q ss_pred EccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhh
Q 004242 380 FGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASA 459 (766)
Q Consensus 380 ~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~ 459 (766)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCCCCCC-----CCC
Q 004242 460 GKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTSPSML-----KSD 534 (766)
Q Consensus 460 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~-----~~~ 534 (766)
....++.||+|||.. ||+|||++|+++++........ ...
T Consensus 324 ---------------------------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~ 368 (671)
T d1r6va_ 324 ---------------------------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPA 368 (671)
T ss_dssp ---------------------------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCC
T ss_pred ---------------------------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccc
Confidence 001678999999976 9999999999998754221111 111
Q ss_pred ccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCc
Q 004242 535 DRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDP 614 (766)
Q Consensus 535 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 614 (766)
.....|..++|||||||||||++|||+|++|+|++.|||++|++||++++. ...+..||||+||+
T Consensus 369 ~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---------------~g~~~~~G~G~vna 433 (671)
T d1r6va_ 369 TNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG---------------NGWDHDTGYGLVKL 433 (671)
T ss_dssp SSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS---------------SSCBTTTBTCBCCH
T ss_pred cCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCCCCCcccChhCH
Confidence 134489999999999999999999999999999999999999999997642 34556899999999
Q ss_pred cccCCCCc
Q 004242 615 ESASDPGL 622 (766)
Q Consensus 615 ~~Al~~~l 622 (766)
.+|++..+
T Consensus 434 ~~Av~~~~ 441 (671)
T d1r6va_ 434 DAALQGPL 441 (671)
T ss_dssp HHHHHCCC
T ss_pred HHHhhCcC
Confidence 99997544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.2e-49 Score=443.20 Aligned_cols=376 Identities=26% Similarity=0.301 Sum_probs=241.1
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
||+..+ ..+|. .+|+||+|||||||||++||+|.++ ++..+++...
T Consensus 6 wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~--- 53 (435)
T d1v6ca_ 6 WGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT--- 53 (435)
T ss_dssp HHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---
T ss_pred ccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC---
Confidence 455443 33444 4799999999999999999999764 1111222111
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCccccccc--CceEEEeeeecCCC-CCHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRY--TSRIAAYKACWSLG-CSSSDILAAIDK 278 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~ 278 (766)
.+...+.|++||||||||||||+..+. | +.|||| +++|+.+|+++... +...++++||++
T Consensus 54 --------~~~~~~~d~~gHGThvAgiiag~~~~~----g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 116 (435)
T d1v6ca_ 54 --------GNWYQPGNNNAHGTHVAGTIAAIANNE----G-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDT 116 (435)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSSS----B-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhccCCCC----c-----eEEEecccCceeeeeecccccccchhhhhhhHHHH
Confidence 112357789999999999999985321 2 379999 89999999998765 677789999999
Q ss_pred HHh-CCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeC
Q 004242 279 AVA-DGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLG 357 (766)
Q Consensus 279 a~~-~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~ 357 (766)
+++ .+++|||+|||.... ...+..++..+.++|+++|+||||+|+...++++..+++|+||+++.+.........+
T Consensus 117 a~~~~~~~vin~S~g~~~~---~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g 193 (435)
T d1v6ca_ 117 CVNSGGANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYT 193 (435)
T ss_dssp HHHTTCCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCC
T ss_pred HhhcccceEEecccCCCCC---CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCC
Confidence 986 599999999998643 3445666778899999999999999999999999999999999987654321100000
Q ss_pred -----------------CCceEe------eeeeccCCCCceeeeEEccCCC--CC--------CCccc--cCCCCCCCcc
Q 004242 358 -----------------NGHSFE------GSSLYSGKGSKQLPLVFGKTAG--VS--------GAEYC--INGSLNRKLV 402 (766)
Q Consensus 358 -----------------~g~~~~------g~~~~~~~~~~~~~lv~~~~~~--~~--------~~~~c--~~~~~~~~~~ 402 (766)
.+.... +...+.... .....+...... .. ....| ....+...++
T Consensus 194 ~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
T d1v6ca_ 194 DQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGV-VPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (435)
T ss_dssp SSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCC-EECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CceEEeecccceeeeeecCCCcccccccCCceeecccc-ccccccccccccccccceeccccceEEEEecCCceeecccc
Confidence 110000 000000000 000000000000 00 00000 0111223345
Q ss_pred cceEEEEecCC-----CchhhhhHHHHhcCceEEEEecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEE
Q 004242 403 KGKIVICQRGL-----NSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASI 477 (766)
Q Consensus 403 ~gkiv~~~~g~-----~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i 477 (766)
.+++.++.+.. .....+.......++.+++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 311 (435)
T d1v6ca_ 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------------------------- 311 (435)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------------------------
T ss_pred ccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------------------------
Confidence 55555555432 22333444444555555444432
Q ss_pred EeceeEecCCCCccccccCCCCCCCC--CCcccCcEEeCCCcEEeecCCCC----CCCCCCCCccccceEEeecccchhh
Q 004242 478 VFKGTVFGNPAPVIASFSSRGPSLVG--HDVIKPDVTAPGVNILAAWPATT----SPSMLKSDDRRVLFNIISGTSMSCP 551 (766)
Q Consensus 478 ~~~~~~~~~~~~~~a~fSs~Gp~~~~--~~~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP 551 (766)
+.+|.... ....|||+.+||..|.++..... .............|..|||||||||
T Consensus 312 ------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP 373 (435)
T d1v6ca_ 312 ------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATP 373 (435)
T ss_dssp ------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHH
T ss_pred ------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHH
Confidence 22232211 14678999999998876532110 0000001112347999999999999
Q ss_pred hhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccccCCccCccccCCCCceecCCchhh
Q 004242 552 HVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAFGSGHVDPESASDPGLIYDIATEDY 631 (766)
Q Consensus 552 ~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~d~~~~d~ 631 (766)
||||++|||+|+||+|+++|||++||+||+++. .++++++||+|+||+.+|++ |
T Consensus 374 ~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~---------------~~~~~~~~G~G~vn~~~A~~-----------~ 427 (435)
T d1v6ca_ 374 HVSGVATLVWSYHPECSASQVRAALNATADDLS---------------VAGRDNQTGYGMINAVAAKA-----------Y 427 (435)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS---------------SSSCBTTTBTCBCCHHHHHH-----------H
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC---------------CCCCCCCcccceecHHHHHH-----------H
Confidence 999999999999999999999999999999763 35677899999999999964 8
Q ss_pred HHHhhh
Q 004242 632 LDYLCS 637 (766)
Q Consensus 632 ~~~lc~ 637 (766)
|...|.
T Consensus 428 l~~~~~ 433 (435)
T d1v6ca_ 428 LDESCT 433 (435)
T ss_dssp HHHCTT
T ss_pred HHhcCC
Confidence 877774
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.1e-48 Score=409.11 Aligned_cols=264 Identities=33% Similarity=0.408 Sum_probs=211.0
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|+++.+ +.+|+++++|+||+|||||||||++||+|.++ ++..++|..
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~---- 61 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVD---- 61 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTT----
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccC----
Confidence 555543 67999999999999999999999999999653 222222221
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
.+ ..+.|..+|||||||+|+|...+. +.+.||||+|+|+.+|+++..+ +...++++||+|++
T Consensus 62 --~~-------~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~ 124 (280)
T d1dbia_ 62 --ND-------YDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAA 124 (280)
T ss_dssp --TB-------SCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHH
T ss_pred --CC-------CccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 11 246788999999999999885332 2347999999999999998766 78899999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
++|++|||||||.... .+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 125 ~~g~~iin~S~g~~~~---~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~-------------- 187 (280)
T d1dbia_ 125 DSGAEVINLSLGCDCH---TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ-------------- 187 (280)
T ss_dssp HTTCSEEEECCSSCCC---CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT--------------
T ss_pred HcCCcEeecccccccc---chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC--------------
Confidence 9999999999998643 23445566688999999999999999887788889999999999642
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEe
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILA 520 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 520 (766)
.+.++.||++||.. |++|||.+|++
T Consensus 188 -----------------------------------------------~~~~a~~S~~g~~~--------d~~apg~~i~~ 212 (280)
T d1dbia_ 188 -----------------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVS 212 (280)
T ss_dssp -----------------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEE
T ss_pred -----------------------------------------------CCCcCCcCCCCCcc--------cccCCccceec
Confidence 12788999999976 99999999999
Q ss_pred ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCC
Q 004242 521 AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600 (766)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 600 (766)
..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++.
T Consensus 213 ~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~---------------- 261 (280)
T d1dbia_ 213 TITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKIS---------------- 261 (280)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCT----------------
T ss_pred cccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCC----------------
Confidence 98654 8999999999999999999999995 4589999999999998652
Q ss_pred CCCcccccCCccCccccCC
Q 004242 601 LATAFAFGSGHVDPESASD 619 (766)
Q Consensus 601 ~~~~~~~G~G~id~~~Al~ 619 (766)
.+...||+|+||+++||+
T Consensus 262 -~~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 262 -GTGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -TBTTTBSSEECCHHHHHT
T ss_pred -CCCCcCCCCeEcHHHHcC
Confidence 234479999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=5.3e-48 Score=405.10 Aligned_cols=262 Identities=33% Similarity=0.462 Sum_probs=214.6
Q ss_pred cCCcc--CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLES--GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
||++. +..+|.++++|+||+|||||||||++||+|+. .+.++|..+
T Consensus 6 wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~-----------------------------~~~~~~~~~--- 53 (274)
T d1r0re_ 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAG--- 53 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTT---
T ss_pred cchhhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhcc-----------------------------cCCccccCC---
Confidence 44443 35789999999999999999999999999942 122233221
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+ ..+.|..+|||||||||++..... .+.|+||+|+|+.+|+++..+ ...++++++++++.
T Consensus 54 ---~-------~~~~d~~gHGT~vAgii~~~~~~~---------~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~ 114 (274)
T d1r0re_ 54 ---E-------AYNTDGNGHGTHVAGTVAALDNTT---------GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp ---C-------CTTCCSSSHHHHHHHHHHCCSSSS---------BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ---C-------CCCCCccccccccccccccccccc---------cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 1 135678899999999999875321 136999999999999998877 67889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC----CcCCCCCceEEEecccCCcceeEEEEe
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS----TVDNTAPWIMTVAASYTDRSFPAIVKL 356 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~~itVga~~~~~~~~~~~~~ 356 (766)
+++++|+|+|||..... ........++.++++++|+||||+|.... .++...+++|+|||.+.+
T Consensus 115 ~~~~~i~n~S~~~~~~~---~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 182 (274)
T d1r0re_ 115 TNGMDVINMSLGGASGS---TAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------- 182 (274)
T ss_dssp HTTCSEEEECEEBSSCC---HHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------
T ss_pred hcCCceeccccccccch---hhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---------
Confidence 99999999999986442 33445556788999999999999986532 445677899999986421
Q ss_pred CCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecC
Q 004242 357 GNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNS 436 (766)
Q Consensus 357 ~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~ 436 (766)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCC
Q 004242 437 DKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGV 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 516 (766)
+.+++||++||. |||+|||.
T Consensus 183 ----------------------------------------------------~~~~~~s~~g~~--------~di~APG~ 202 (274)
T d1r0re_ 183 ----------------------------------------------------SNRASFSSVGAE--------LEVMAPGA 202 (274)
T ss_dssp ----------------------------------------------------SCBCTTCCCSTT--------EEEEEECS
T ss_pred ----------------------------------------------------CCcccccCCCCC--------EEEEecCC
Confidence 267899999985 49999999
Q ss_pred cEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCC
Q 004242 517 NILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGS 596 (766)
Q Consensus 517 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~ 596 (766)
+|+++.+.+ .|..++|||||||+|||++|||+|++|+|++.+||++|++||+++
T Consensus 203 ~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~------------- 256 (274)
T d1r0re_ 203 GVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------------- 256 (274)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCC-------------
T ss_pred CcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC-------------
Confidence 999998665 889999999999999999999999999999999999999999854
Q ss_pred CCCCCCCcccccCCccCccccCC
Q 004242 597 SDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 597 ~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
.+...||+|+||+.+|++
T Consensus 257 -----~~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 257 -----GSSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -----SCHHHHTTCBCCHHHHTC
T ss_pred -----CCCCceEcCeecHHHhcC
Confidence 245689999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.3e-47 Score=403.65 Aligned_cols=258 Identities=33% Similarity=0.459 Sum_probs=213.1
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
++.+|.++++|+||+|||||||||++||+|+.. ..+++... +.
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~------~~-- 55 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPS------ET-- 55 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTT------CC--
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCC------CC--
Confidence 367999999999999999999999999999532 11122111 10
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 287 (766)
....+..+|||||||||+|.... ....|+||+|+|+.+|+++..+ ....+++++|+|+++.+++|+
T Consensus 56 ----~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~ 122 (281)
T d1to2e_ 56 ----NPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVI 122 (281)
T ss_dssp ----CTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEE
T ss_pred ----CCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccc
Confidence 12234678999999999987422 1137999999999999998776 788889999999999999999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCC----CCcCCCCCceEEEecccCCcceeEEEEeCCCceEe
Q 004242 288 SLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSI----STVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363 (766)
Q Consensus 288 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~ 363 (766)
|+|||... ....+..++..+.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 123 n~S~g~~~---~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~---------------- 183 (281)
T d1to2e_ 123 NMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------------- 183 (281)
T ss_dssp EECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT----------------
T ss_pred ccccCCCc---chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC----------------
Confidence 99999753 345567777789999999999999998753 2456678899999996421
Q ss_pred eeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc
Q 004242 364 GSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL 443 (766)
Q Consensus 364 g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 443 (766)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecC
Q 004242 444 IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP 523 (766)
Q Consensus 444 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 523 (766)
+.++.||++||.. |++|||.+|+++.+
T Consensus 184 ---------------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~ 210 (281)
T d1to2e_ 184 ---------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLP 210 (281)
T ss_dssp ---------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEET
T ss_pred ---------------------------------------------CCCCcccCCCCCc--------cccCCCCCceeecC
Confidence 2678999999976 99999999999987
Q ss_pred CCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCC
Q 004242 524 ATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLAT 603 (766)
Q Consensus 524 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~ 603 (766)
.+ .|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. +
T Consensus 211 ~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------------------~ 259 (281)
T d1to2e_ 211 GN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------------------D 259 (281)
T ss_dssp TT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------------------C
T ss_pred CC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------------------C
Confidence 65 8899999999999999999999999999999999999999999642 3
Q ss_pred cccccCCccCccccCC
Q 004242 604 AFAFGSGHVDPESASD 619 (766)
Q Consensus 604 ~~~~G~G~id~~~Al~ 619 (766)
...||+|+||+.+|++
T Consensus 260 ~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 260 SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp HHHHTTCBCCHHHHTS
T ss_pred CCCcccCcccHHHHHh
Confidence 4579999999999998
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.2e-47 Score=401.47 Aligned_cols=263 Identities=29% Similarity=0.421 Sum_probs=218.8
Q ss_pred cCCccC--CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCcccccccccccccccc
Q 004242 124 LGLESG--IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYES 201 (766)
Q Consensus 124 ~g~~~~--~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~ 201 (766)
|+++.+ ..+|+.+ +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 13 w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~---------------------------~~~~~~~~~~--- 61 (279)
T d1thma_ 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDN--- 61 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTT---
T ss_pred cChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC---------------------------eecccccccc---
Confidence 455433 5789887 899999999999999999999653 3333333321
Q ss_pred ccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHH
Q 004242 202 VVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAV 280 (766)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 280 (766)
+ ..+.|..+|||||||+|++...+. ..+.|+||+|+|+.+|++...+ +...+++++|++++
T Consensus 62 ---~-------~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~ 123 (279)
T d1thma_ 62 ---D-------STPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAA 123 (279)
T ss_dssp ---B-------SCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred ---C-------cccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHh
Confidence 1 246788999999999999985432 2347999999999999998776 78889999999999
Q ss_pred hCCCcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCc
Q 004242 281 ADGVDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGH 360 (766)
Q Consensus 281 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~ 360 (766)
+.+++|+|+|||.... ......+...+.++|+++|+|+||+|......+...|++++|||++.
T Consensus 124 ~~~~~i~n~S~G~~~~---~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------------- 186 (279)
T d1thma_ 124 DQGAKVISLSLGGTVG---NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------- 186 (279)
T ss_dssp HTTCSEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------------
T ss_pred hcCCceeccccCcccc---chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC--------------
Confidence 9999999999998643 34455666788899999999999999888888888999999999642
Q ss_pred eEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc
Q 004242 361 SFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG 440 (766)
Q Consensus 361 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 440 (766)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEe
Q 004242 441 EELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILA 520 (766)
Q Consensus 441 ~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 520 (766)
.+.++.||++|+.. ||+|||.+|++
T Consensus 187 -----------------------------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~ 211 (279)
T d1thma_ 187 -----------------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYS 211 (279)
T ss_dssp -----------------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEE
T ss_pred -----------------------------------------------CCCCccccCCCceE--------EEeeeeecccc
Confidence 12688999999986 99999999999
Q ss_pred ecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCC
Q 004242 521 AWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTP 600 (766)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 600 (766)
+.+.+ .|..++|||||||||||++|||+|.+| ++.+||++|++||+++.
T Consensus 212 ~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~---------------- 260 (279)
T d1thma_ 212 TYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS---------------- 260 (279)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT----------------
T ss_pred ccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC----------------
Confidence 98765 899999999999999999999999765 78999999999998752
Q ss_pred CCCcccccCCccCccccCC
Q 004242 601 LATAFAFGSGHVDPESASD 619 (766)
Q Consensus 601 ~~~~~~~G~G~id~~~Al~ 619 (766)
..+..||+|+||+.+|++
T Consensus 261 -g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 -GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -TBTTTBSSEECCHHHHHH
T ss_pred -CCCCcceeeeEcHHHhhC
Confidence 234579999999999975
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2.4e-47 Score=398.92 Aligned_cols=256 Identities=34% Similarity=0.468 Sum_probs=214.6
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|.++++|+||+||||||||+ +||+|..+ ..++|..+ +
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~------~--- 53 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG------E--- 53 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT------C---
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC------C---
Confidence 367999999999999999999998 89999532 11222211 1
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCCCcEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADGVDVL 287 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 287 (766)
..+.|..+|||||||||++.... +...|+||+|+|+.+|++...+ .....+.++++++..+++++|
T Consensus 54 ----~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~i 120 (269)
T d1gcia_ 54 ----PSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVA 120 (269)
T ss_dssp ----CSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEE
T ss_pred ----CCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccc
Confidence 14567889999999999987532 2236999999999999998776 677889999999999999999
Q ss_pred EeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcCCCCCceEEEecccCCcceeEEEEeCCCceEeeeee
Q 004242 288 SLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEGSSL 367 (766)
Q Consensus 288 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g~~~ 367 (766)
|+|||.... ......+...+.++|+++|+||||+|.....++...|++|+||+++.+
T Consensus 121 n~s~g~~~~---~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 177 (269)
T d1gcia_ 121 NLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------------- 177 (269)
T ss_dssp EECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------
T ss_pred ccccccccc---cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC--------------------
Confidence 999997643 233455666889999999999999998888888899999999996421
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccccccC
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELIADA 447 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 447 (766)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCCCCC
Q 004242 448 HVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPATTS 527 (766)
Q Consensus 448 ~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 527 (766)
+.++.||++||.. ||+|||.++.++.+..
T Consensus 178 -----------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~-- 206 (269)
T d1gcia_ 178 -----------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPGS-- 206 (269)
T ss_dssp -----------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETTT--
T ss_pred -----------------------------------------CCcccccCCCCCc--------eEEEeeecceeccCCC--
Confidence 2678999999975 9999999999998665
Q ss_pred CCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCcccc
Q 004242 528 PSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATAFAF 607 (766)
Q Consensus 528 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (766)
.|..++|||||||+|||++|||+|++|+|++++||++|++||+++ .++..|
T Consensus 207 -----------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~------------------g~~~~~ 257 (269)
T d1gcia_ 207 -----------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL------------------GSTNLY 257 (269)
T ss_dssp -----------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCC------------------SCHHHH
T ss_pred -----------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC------------------CCCCCc
Confidence 899999999999999999999999999999999999999999964 234579
Q ss_pred cCCccCccccCC
Q 004242 608 GSGHVDPESASD 619 (766)
Q Consensus 608 G~G~id~~~Al~ 619 (766)
|+|+||+++|++
T Consensus 258 G~G~ln~~~Avk 269 (269)
T d1gcia_ 258 GSGLVNAEAATR 269 (269)
T ss_dssp TTCBCCHHHHTC
T ss_pred ccCeEcHHHhcC
Confidence 999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=5.6e-43 Score=372.98 Aligned_cols=293 Identities=26% Similarity=0.329 Sum_probs=218.2
Q ss_pred ccCCcc--CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccc
Q 004242 123 FLGLES--GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYE 200 (766)
Q Consensus 123 ~~g~~~--~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~ 200 (766)
.||++. ...+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~ 59 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT 59 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC
Confidence 456554 478999999999999999999999999999653 222333322111
Q ss_pred cccCccccccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHH
Q 004242 201 SVVGRINETVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKA 279 (766)
Q Consensus 201 ~~~~~~~~~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 279 (766)
. ......|..+|||||||||+|...++ ...+.||||+|+|+.+|++...+ +..++++.+++++
T Consensus 60 ~---------~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 60 P---------INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp C---------EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred C---------CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 0 11245678899999999999975332 22247999999999999998766 7888899999998
Q ss_pred HhCC-----CcEEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--CcCCCCCceEEEecccCCcceeE
Q 004242 280 VADG-----VDVLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS--TVDNTAPWIMTVAASYTDRSFPA 352 (766)
Q Consensus 280 ~~~g-----~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~~itVga~~~~~~~~~ 352 (766)
++.+ ..|+|+|++.... ......+...+.++|+++|+||||++.... .++...+++++|++.........
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~~---~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~ 200 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT 200 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE
T ss_pred cccccccccccccccccccccc---ccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc
Confidence 8753 4689999987533 344555666888999999999999987654 34556788888887532110000
Q ss_pred EEEeCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEE
Q 004242 353 IVKLGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGML 432 (766)
Q Consensus 353 ~~~~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i 432 (766)
..
T Consensus 201 ~~------------------------------------------------------------------------------ 202 (309)
T d2ixta1 201 YR------------------------------------------------------------------------------ 202 (309)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EecCCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEE
Q 004242 433 LLNSDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVT 512 (766)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 512 (766)
. ........++++|+... ...||||+
T Consensus 203 -~---------------------------------------------------~~~~~~~~~~~~~~~~~--~~~~vdi~ 228 (309)
T d2ixta1 203 -V---------------------------------------------------ADYSSRGYISTAGDYVI--QEGDIEIS 228 (309)
T ss_dssp -E---------------------------------------------------CTTSCCCCTTTTTSSSC--CTTCCCEE
T ss_pred -c---------------------------------------------------ccccccccccccccccc--CCCcceee
Confidence 0 00113455677777765 67899999
Q ss_pred eCCCcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcccc
Q 004242 513 APGVNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIAD 592 (766)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~ 592 (766)
|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+...
T Consensus 229 apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g-- 293 (309)
T d2ixta1 229 APGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYG-- 293 (309)
T ss_dssp EECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTT--
T ss_pred cCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcC--
Confidence 9999999998664 7999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCCCCCCCcccccCCccCc
Q 004242 593 VGGSSDTPLATAFAFGSGHVDP 614 (766)
Q Consensus 593 ~~~~~~~~~~~~~~~G~G~id~ 614 (766)
.....++.+|+|++|+
T Consensus 294 ------~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 294 ------AAIGDDYASGFGFARV 309 (309)
T ss_dssp ------CCSSSBTTTBTCBCCC
T ss_pred ------CccCCCcccCCCEecC
Confidence 1355677889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.1e-42 Score=363.27 Aligned_cols=238 Identities=33% Similarity=0.418 Sum_probs=192.4
Q ss_pred ccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCC
Q 004242 134 DATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYR 213 (766)
Q Consensus 134 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 213 (766)
....+|+||+|||||||||++||+|.++. ...+.+ ..
T Consensus 25 ~~~~tG~Gv~VaViDsGid~~Hpdf~g~~---------------------------~~~~~~----------------~~ 61 (279)
T d2pwaa1 25 YDESAGQGSCVYVIDTGIEASHPEFEGRA---------------------------QMVKTY----------------YY 61 (279)
T ss_dssp CCTTTTTTEEEEEEESCCCTTCGGGTTCE---------------------------EEEEES----------------SS
T ss_pred ecCCCCCCeEEEEECcCCCCCChhhcCCc---------------------------eeccCC----------------CC
Confidence 34558999999999999999999997541 000000 01
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHhCC-------Cc
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVADG-------VD 285 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~d 285 (766)
.+.|..+|||||||||+|.. .|+||+|+|+.+|++.... ...+++..+++++.... +.
T Consensus 62 ~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (279)
T d2pwaa1 62 SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGV 127 (279)
T ss_dssp CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEE
T ss_pred CcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheeccccccccccccc
Confidence 35678899999999999863 6999999999999998765 67788899999987643 45
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCC-cCCCCCceEEEecccCCcceeEEEEeCCCceEee
Q 004242 286 VLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSIST-VDNTAPWIMTVAASYTDRSFPAIVKLGNGHSFEG 364 (766)
Q Consensus 286 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~~itVga~~~~~~~~~~~~~~~g~~~~g 364 (766)
|+|+|||... .+.+..++..+.++|+++|+|+||++..... .+...|++|+|||++.
T Consensus 128 i~n~s~g~~~----~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~------------------ 185 (279)
T d2pwaa1 128 VASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------------------ 185 (279)
T ss_dssp EEEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------------
T ss_pred ceeccCCCcc----ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee------------------
Confidence 9999999743 3556667778899999999999999876543 5668899999999642
Q ss_pred eeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCccccc
Q 004242 365 SSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEELI 444 (766)
Q Consensus 365 ~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 444 (766)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecCC
Q 004242 445 ADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWPA 524 (766)
Q Consensus 445 ~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 524 (766)
.+.++.||++||.. ||+|||.+|+++++.
T Consensus 186 -------------------------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~ 214 (279)
T d2pwaa1 186 -------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG 214 (279)
T ss_dssp -------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT
T ss_pred -------------------------------------------cCCCccccCCCCcc--------ccccccccccccccC
Confidence 12688999999975 999999999999876
Q ss_pred CCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCc
Q 004242 525 TTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSDTPLATA 604 (766)
Q Consensus 525 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 604 (766)
+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++. ..
T Consensus 215 ~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~-------------------~~ 261 (279)
T d2pwaa1 215 G-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG-------------------DL 261 (279)
T ss_dssp T-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES-------------------CC
T ss_pred C-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC-------------------CC
Confidence 5 899999999999999999999999999999887775 67788753 22
Q ss_pred ccccCCccCc
Q 004242 605 FAFGSGHVDP 614 (766)
Q Consensus 605 ~~~G~G~id~ 614 (766)
...|+|++|.
T Consensus 262 ~~~g~g~~n~ 271 (279)
T d2pwaa1 262 SNIPFGTVNL 271 (279)
T ss_dssp BSCCTTSCCE
T ss_pred CCCCCCChhh
Confidence 3678999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.2e-40 Score=356.30 Aligned_cols=296 Identities=25% Similarity=0.247 Sum_probs=218.6
Q ss_pred CCcccc-CCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 130 IGLWDA-TNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 130 ~~~~~~-~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
..+|.. |++|+||+|||||||||++||+|.... .| +.++...+.+.
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~---------------~~~~~~~~~~~------------ 57 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF---------------RGKITALYALG------------ 57 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT---------------TTCEEEEEETT------------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc---------------CCcEEeecCCC------------
Confidence 346664 999999999999999999999996531 11 11222222221
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC---CCHHHHHHHHHHHHhCCCc
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG---CSSSDILAAIDKAVADGVD 285 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~d 285 (766)
....+.|..||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++
T Consensus 58 --~~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
T d1wmda2 58 --RTNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR 124 (318)
T ss_dssp --TTTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCc
Confidence 1124567899999999999997422 27999999999999998765 3445578899999999999
Q ss_pred EEEeccCCCCCCCcccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcC--CCCCceEEEecccCCcceeEEEEeCCCceEe
Q 004242 286 VLSLSLGGSSRPYYRDTVAIASFGATQSGVFVSCSAGNSGPSISTVD--NTAPWIMTVAASYTDRSFPAIVKLGNGHSFE 363 (766)
Q Consensus 286 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~~itVga~~~~~~~~~~~~~~~g~~~~ 363 (766)
|+|+|||.............+...+.++++++|+|+||.|....... ...++++++.+........
T Consensus 125 i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------ 192 (318)
T d1wmda2 125 IHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------ 192 (318)
T ss_dssp EEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG------------
T ss_pred eeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc------------
Confidence 99999998766555555666666778999999999999997766443 3567777777653211100
Q ss_pred eeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCcccc
Q 004242 364 GSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEGEEL 443 (766)
Q Consensus 364 g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 443 (766)
+..
T Consensus 193 ----------------------------~~~------------------------------------------------- 195 (318)
T d1wmda2 193 ----------------------------GSY------------------------------------------------- 195 (318)
T ss_dssp ----------------------------CGG-------------------------------------------------
T ss_pred ----------------------------ccc-------------------------------------------------
Confidence 000
Q ss_pred cccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEEeecC
Q 004242 444 IADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNILAAWP 523 (766)
Q Consensus 444 ~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 523 (766)
......+..+|++||... ...|||++|||.+|+++..
T Consensus 196 -----------------------------------------~~~~~~~~~~s~~G~~~~--~~~~~~~~a~G~~i~~~~~ 232 (318)
T d1wmda2 196 -----------------------------------------ADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILSARS 232 (318)
T ss_dssp -----------------------------------------GSCTTSBCTTSCCCCCTT--SCCCCCEEEECSSEEEECC
T ss_pred -----------------------------------------cccccccccccccCCCcC--CCcccceeecCceEEeccc
Confidence 011236778999999886 6789999999999999876
Q ss_pred CCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhC-----CCCCHHHHHHHHHhccccCCCCCCccccCCCCCC
Q 004242 524 ATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVH-----EDWSTAAIKSALMTTAYTLNNRNSPIADVGGSSD 598 (766)
Q Consensus 524 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 598 (766)
....... ........|..++|||||||||||++|||+|++ +.|++.+||++|++||+++.
T Consensus 233 ~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~-------------- 297 (318)
T d1wmda2 233 SLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG-------------- 297 (318)
T ss_dssp TTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS--------------
T ss_pred cccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC--------------
Confidence 6432211 111223468889999999999999999999974 46889999999999999763
Q ss_pred CCCCCcccccCCccCccccCC
Q 004242 599 TPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 599 ~~~~~~~~~G~G~id~~~Al~ 619 (766)
...+...||||+||+.+||+
T Consensus 298 -~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 298 -LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -SCSSCTTTTTCBCCHHHHHT
T ss_pred -CCCCCCCeeeceecHHHHhC
Confidence 34455689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-39 Score=347.35 Aligned_cols=283 Identities=16% Similarity=0.198 Sum_probs=192.7
Q ss_pred CCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccc
Q 004242 130 IGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINET 209 (766)
Q Consensus 130 ~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~ 209 (766)
..+|..+++|+||+|||||||||++||+|.++. ...+.|... ..+. ..
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~---------------------------~~~~~~~~~----~~~~-~~ 74 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY---------------------------DPGASFDVN----DQDP-DP 74 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB---------------------------CGGGCEETT----TTBS-CC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc---------------------------ccCCCcccc----CCCC-cc
Confidence 468999999999999999999999999997641 111111100 0000 01
Q ss_pred cCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHh-CCCcEEE
Q 004242 210 VDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVA-DGVDVLS 288 (766)
Q Consensus 210 ~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIn 288 (766)
.+.....|..+|||||||||+|...++.. ..|+||+++++.+|+++. ...+.+.++.++++ .+++++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n 143 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYS 143 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEE
T ss_pred ccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEe
Confidence 11223557899999999999998644322 269999999999998753 34456677777775 6899999
Q ss_pred eccCCCCCC-Cc--------ccHHHHHHHHHHhCCCEEEEecCCCCCCCCCcC----CCCCceEEEecccCCcceeEEEE
Q 004242 289 LSLGGSSRP-YY--------RDTVAIASFGATQSGVFVSCSAGNSGPSISTVD----NTAPWIMTVAASYTDRSFPAIVK 355 (766)
Q Consensus 289 ~SlG~~~~~-~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~~itVga~~~~~~~~~~~~ 355 (766)
+|||..... .. ......+...+..+|+++|+||||++....... ...+.+++|++.+.
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~--------- 214 (334)
T d1p8ja2 144 ASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ--------- 214 (334)
T ss_dssp ECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---------
T ss_pred CCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc---------
Confidence 999975431 11 111233334566899999999999875543221 13345566655431
Q ss_pred eCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEec
Q 004242 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLN 435 (766)
Q Consensus 356 ~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 435 (766)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCC
Q 004242 436 SDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPG 515 (766)
Q Consensus 436 ~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 515 (766)
.+..+.||++|+... .+..+||
T Consensus 215 ----------------------------------------------------~g~~~~~s~~~~~~~------~~~~~~~ 236 (334)
T d1p8ja2 215 ----------------------------------------------------FGNVPWYSEACSSTL------ATTYSSG 236 (334)
T ss_dssp ----------------------------------------------------TSCCCTTCCBCTTCC------EEEECCC
T ss_pred ----------------------------------------------------CCceeeecccCCccc------ccccccc
Confidence 124556666665542 1344444
Q ss_pred Cc-----EEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcc
Q 004242 516 VN-----ILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI 590 (766)
Q Consensus 516 ~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~ 590 (766)
.. +.+... ...|..++|||||||||||++|||+|++|+|++.|||++|++||+++......+
T Consensus 237 ~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~ 303 (334)
T d1p8ja2 237 NQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDW 303 (334)
T ss_dssp STTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCC
T ss_pred ccccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccc
Confidence 32 222221 227889999999999999999999999999999999999999999876554444
Q ss_pred ccCCCCCCCCCCCcccccCCccCccccCC
Q 004242 591 ADVGGSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 591 ~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
..... .......||+|+||+++||+
T Consensus 304 ~~~~~----~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 304 ATNGV----GRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp EECTT----SCEEBTTTBTCBCCHHHHHH
T ss_pred cccCC----CcccCCCCcceEeCHHHHHH
Confidence 33322 12344589999999999986
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-38 Score=344.33 Aligned_cols=285 Identities=18% Similarity=0.198 Sum_probs=200.8
Q ss_pred CCCccccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCcccc
Q 004242 129 GIGLWDATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINE 208 (766)
Q Consensus 129 ~~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~ 208 (766)
+..+|.++++|+||+|||||||||++||+|.++-.. .+.++|.+. .
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-------------------------~~~~~~~~~------~--- 80 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------------EGSWDFNDN------T--- 80 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------------GGCEETTTT------B---
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-------------------------ccccccccC------C---
Confidence 356899999999999999999999999999764100 011222211 0
Q ss_pred ccCCCCCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHHhCCCcEEE
Q 004242 209 TVDYRSPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAVADGVDVLS 288 (766)
Q Consensus 209 ~~~~~~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 288 (766)
.......+..+|||||||+|+|....+.. ..|+||+|+|+.++++.. .....++..++.+++.. .+|+|
T Consensus 81 -~~~~~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~ 149 (339)
T d2id4a2 81 -NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYS 149 (339)
T ss_dssp -SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEE
T ss_pred -CccCCCcccccccceeeeccccccccccc--------ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEe
Confidence 01123456789999999999997544322 369999999999998753 36777788888887765 48999
Q ss_pred eccCCCCCC-C-------cccH-HHHHHHHHHhCCCEEEEecCCCCCCCCC--cCC--CCCceEEEecccCCcceeEEEE
Q 004242 289 LSLGGSSRP-Y-------YRDT-VAIASFGATQSGVFVSCSAGNSGPSIST--VDN--TAPWIMTVAASYTDRSFPAIVK 355 (766)
Q Consensus 289 ~SlG~~~~~-~-------~~~~-~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~--~~p~~itVga~~~~~~~~~~~~ 355 (766)
+|+|..... . .... ...+...+..+|+++|+||||++..... ++. ..+.+++|++++
T Consensus 150 ~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (339)
T d2id4a2 150 CSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID---------- 219 (339)
T ss_dssp ECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC----------
T ss_pred ccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc----------
Confidence 999875431 1 1111 2233345667999999999998754432 222 334455555432
Q ss_pred eCCCceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEec
Q 004242 356 LGNGHSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLN 435 (766)
Q Consensus 356 ~~~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~ 435 (766)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCC
Q 004242 436 SDKEGEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPG 515 (766)
Q Consensus 436 ~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 515 (766)
..+..+.||++|+.. ...++..+||
T Consensus 220 ---------------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~~~g 244 (339)
T d2id4a2 220 ---------------------------------------------------HKDLHPPYSEGCSAV----MAVTYSSGSG 244 (339)
T ss_dssp ---------------------------------------------------TTSCCCTTCCCCTTE----EEEEECSBTT
T ss_pred ---------------------------------------------------ccccccccccccCcc----ceeeeeeccc
Confidence 112556677777753 3445777899
Q ss_pred CcEEeecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCCcc-ccCC
Q 004242 516 VNILAAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHEDWSTAAIKSALMTTAYTLNNRNSPI-ADVG 594 (766)
Q Consensus 516 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~~~~~-~~~~ 594 (766)
..+.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||..++...... .+..
T Consensus 245 ~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~ 312 (339)
T d2id4a2 245 EYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA 312 (339)
T ss_dssp BCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS
T ss_pred cccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccC
Confidence 9998876443 16888999999999999999999999999999999999999999876543221 1111
Q ss_pred CCCCCCCCCcccccCCccCccccCC
Q 004242 595 GSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 595 ~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
. .......||||+||+.+||+
T Consensus 313 ~----~~~~~~~~G~G~ln~~~Av~ 333 (339)
T d2id4a2 313 M----GKKYSHRYGFGKIDAHKLIE 333 (339)
T ss_dssp S----SSEEBTTTBTCBCCHHHHHH
T ss_pred C----CCCcCCCccchhhCHHHHHH
Confidence 1 23455679999999999987
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=5.7e-31 Score=284.86 Aligned_cols=317 Identities=16% Similarity=0.118 Sum_probs=184.3
Q ss_pred ccCCCCCCcEEEEEecccCCCCCCCcCCCCCCCCCCcccccccCCCcccCCCccccccccccccccccccCccccccCCC
Q 004242 134 DATNLAKDVIVGVIDTGIWPEHIAFQDTGMPPVPSRWKGGCEEGTKFSQSNCNNKLIGARAFFKGYESVVGRINETVDYR 213 (766)
Q Consensus 134 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~~~~~~~n~kiig~~~~~~g~~~~~~~~~~~~~~~ 213 (766)
..+++|+||+|||||||||++||+|.+. |+. + ++.. .+ .
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~----------------------~--~~~~--~~-------~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS----------------------L--GVSA--PQ-------V 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH----------------------T--TCCC--CC-------E
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh----------------------c--CCCC--CC-------C
Confidence 4689999999999999999999999642 100 0 0000 00 0
Q ss_pred CCCCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCCCCHHHHHHHHHHHH---hCCCcEEEec
Q 004242 214 SPRDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLGCSSSDILAAIDKAV---ADGVDVLSLS 290 (766)
Q Consensus 214 ~~~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~---~~g~dVIn~S 290 (766)
.+.+..+|+||+++++++....... ....+.||||+|+|+.+|++.. ...++.++++++ +.+++|||+|
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~~----d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S 128 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVEL----DIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSIS 128 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHHH----HHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred ceeCCCCCCCCCCCccccccccccC----CcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecc
Confidence 1234567777777777654321110 0112479999999999999744 334455555554 4689999999
Q ss_pred cCCCCCC---CcccHHHHHHHHHHhCCCEEEEecCCCCCCCC--------CcCCCCCceEEEecccCCcceeEEEEeCCC
Q 004242 291 LGGSSRP---YYRDTVAIASFGATQSGVFVSCSAGNSGPSIS--------TVDNTAPWIMTVAASYTDRSFPAIVKLGNG 359 (766)
Q Consensus 291 lG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~p~~itVga~~~~~~~~~~~~~~~g 359 (766)
||..... .....+......+..+|+++|+|+||+|.... ..+...+++++|++....... +
T Consensus 129 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~ 200 (357)
T d1t1ga_ 129 WGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------G 200 (357)
T ss_dssp CCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------S
T ss_pred cccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------C
Confidence 9975432 22344556666778899999999999875432 223466788888875432110 0
Q ss_pred ceEeeeeeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC
Q 004242 360 HSFEGSSLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE 439 (766)
Q Consensus 360 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 439 (766)
. ....+.+... . .....+ .+.-.....
T Consensus 201 ~-~~~~~~~~~~--------------------~-----------------------------~~~~~~-~g~s~~~~~-- 227 (357)
T d1t1ga_ 201 R-IERETVWNDG--------------------P-----------------------------DGGSTG-GGVSRIFPL-- 227 (357)
T ss_dssp C-EEEEEECBCH--------------------H-----------------------------HHCBCC-CEECSSSCC--
T ss_pred c-cccceecccc--------------------c-----------------------------cccccc-CCccccccc--
Confidence 0 0000000000 0 000000 000000000
Q ss_pred cccccccCccccEEEEcHhhHHHHHHHHhcCCCCeEEEEeceeEecCCCCccccccCCCCCCCCCCcccCcEEeCCCcEE
Q 004242 440 GEELIADAHVLPAATLGASAGKAVKKYVNSTKRPTASIVFKGTVFGNPAPVIASFSSRGPSLVGHDVIKPDVTAPGVNIL 519 (766)
Q Consensus 440 ~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 519 (766)
..........+++.+++.. ++.|||+.+++....
T Consensus 228 --------------------------------------------p~~~~~~~~~~~~~~~~~~--~~~~pd~~~~~~~~~ 261 (357)
T d1t1ga_ 228 --------------------------------------------PSWQERANVPPSANPGAGS--GRGVPDVAGNADPAT 261 (357)
T ss_dssp --------------------------------------------CGGGTTSCCCCCSSTTCCC--CCEECSEEEECCTTE
T ss_pred --------------------------------------------CcccccccccccccCCCCC--CceecceecccCCCC
Confidence 0011224566777777765 899999999876654
Q ss_pred --eecCCCCCCCCCCCCccccceEEeecccchhhhhhhHHHHHHhhCCC---CCHHHHHHHHHhccccCCCCCCccccCC
Q 004242 520 --AAWPATTSPSMLKSDDRRVLFNIISGTSMSCPHVSGLAALLKSVHED---WSTAAIKSALMTTAYTLNNRNSPIADVG 594 (766)
Q Consensus 520 --sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---~s~~~ik~~L~~TA~~~~~~~~~~~~~~ 594 (766)
+....+ .|..++|||||||||||++|||+|+++. +...++..+...+.+++...........
T Consensus 262 ~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~ 328 (357)
T d1t1ga_ 262 GYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRA 328 (357)
T ss_dssp EEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSS
T ss_pred ceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCC
Confidence 443332 8999999999999999999999998643 2333444433333332211111111111
Q ss_pred CCCCCCCCCcccccCCccCccccCC
Q 004242 595 GSSDTPLATAFAFGSGHVDPESASD 619 (766)
Q Consensus 595 ~~~~~~~~~~~~~G~G~id~~~Al~ 619 (766)
.+++..+.++..+|+|++|+.++++
T Consensus 329 ~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 329 RIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred CcccCccCCCCCccCchhhHHHHHH
Confidence 1112245667789999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=6.7e-29 Score=270.28 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCCCCCchhHHHhhccccccccccccccCCcccccccCceEEEeeeecCCC-CCHHHHHHHHHHHHh-CCCcEEEeccCC
Q 004242 216 RDAQGHGTHTASTAAGNIVANANLFGLARGKAAGMRYTSRIAAYKACWSLG-CSSSDILAAIDKAVA-DGVDVLSLSLGG 293 (766)
Q Consensus 216 ~d~~gHGThVAgi~aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~SlG~ 293 (766)
.+..+||||+++++.+.... ..+.||||+|+|+.+|++.+.+ ....+++++|+||++ .+++|||+|||.
T Consensus 65 ~~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~ 135 (369)
T d1ga6a_ 65 SSNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGW 135 (369)
T ss_dssp CTTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCE
T ss_pred CCCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccc
Confidence 34678999999998776321 1236999999999999998776 677889999999996 579999999997
Q ss_pred CCC----CCcccHHHHHHHHHHhCCCEEEEecCCCCCCCC-------------CcCCCCCceEEEeccc
Q 004242 294 SSR----PYYRDTVAIASFGATQSGVFVSCSAGNSGPSIS-------------TVDNTAPWIMTVAASY 345 (766)
Q Consensus 294 ~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~~itVga~~ 345 (766)
... ....+.+..++.+|..+|++||+||||+|.... ..+...+++++|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 136 CEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 533 244456677777889999999999999985432 2344678999999864
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=9.9e-09 Score=81.33 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=54.7
Q ss_pred CceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEecceeeEEEEEeCHHHHhhhccCCC
Q 004242 24 QTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYENAISGFSAKLSTKQLKSLETVDG 103 (766)
Q Consensus 24 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~l~~~~~~~L~~~p~ 103 (766)
+++|||.||++..... ... ...... ..+.++.++|+ .||||+++|++++++.|+++|+
T Consensus 1 e~~YIV~fK~~~~~~~-----~~~----~~~~v~------------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~ 58 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMS-----SAK----KKDVIS------------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPS 58 (71)
T ss_dssp CEEEEEEECSSSSCCS-----HHH----HHHHHH------------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTT
T ss_pred CCcEEEEECCCCChHH-----HHH----HHHHHH------------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCC
Confidence 4789999999875433 111 111111 35789999998 7999999999999999999999
Q ss_pred eEEEEccccccc
Q 004242 104 FLSATPDELLTL 115 (766)
Q Consensus 104 V~~v~~~~~~~~ 115 (766)
|.+||+++.++.
T Consensus 59 V~yVE~D~v~~a 70 (71)
T d1scjb_ 59 VAYVEEDHIAHE 70 (71)
T ss_dssp EEEEEECCEEEE
T ss_pred ceEEeCCcEEEc
Confidence 999999997653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.50 E-value=4.3e-08 Score=77.81 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=48.7
Q ss_pred CceEEEEeCCCCCcCCCCCccHHHHHHHHHhhhcccccccccccccCCCCcEEEEec-ceeeEEEEEeCHHHHhhhccCC
Q 004242 24 QTTYVIHMDKSKIAANHSPGSVRQFYEAVIDSINKFSSQQEDQEQETTPPQILYAYE-NAISGFSAKLSTKQLKSLETVD 102 (766)
Q Consensus 24 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~g~s~~l~~~~~~~L~~~p 102 (766)
.++|||.||++..... ...+.. ... ..+..+.+.|. +.|+||+++++++.++.|+++|
T Consensus 2 aG~YIVvlK~~~~~~~-----~~~~~~----~~~------------~~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p 60 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDK-----IRETKD----EVI------------AEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQ 60 (72)
T ss_dssp CEEEEEEECTTCCHHH-----HHHHHH----HHH------------HHTCCCCEEEEETTEEEEEEEECHHHHHHHHHTB
T ss_pred CccEEEEECCCCCHHH-----HHHHHH----HHH------------hcCCceEEEEeeeeeeEEEEecCHHHHHHHHhCC
Confidence 3799999999764322 222222 112 12456777887 6899999999999999999866
Q ss_pred C--eEEEEccc
Q 004242 103 G--FLSATPDE 111 (766)
Q Consensus 103 ~--V~~v~~~~ 111 (766)
+ |.+||+++
T Consensus 61 ~~~V~yVE~D~ 71 (72)
T d1v5ib1 61 GDLIDSIEEDH 71 (72)
T ss_dssp TTTEEEEEECC
T ss_pred CCCCceECCCC
Confidence 5 99999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.0013 Score=61.08 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=66.8
Q ss_pred ccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCCc-------
Q 004242 368 YSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKEG------- 440 (766)
Q Consensus 368 ~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~~------- 440 (766)
|+......-++||.+-+...+.+ .+ ..+++|||+|+++|.+.+.+|..+|++.||.|+|++.+..+.
T Consensus 33 ys~~G~v~g~lVy~n~G~~~Df~-----~L-~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~ 106 (193)
T d1de4c2 33 YSKAATVTGKLVHANFGTKKDFE-----DL-YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAEL 106 (193)
T ss_dssp TCCCEEEEECEEECSTTCHHHHH-----TC-SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTC
T ss_pred cCCCCceeEEEEEccCCCHHHHH-----Hh-ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccc
Confidence 44444556688887654211111 01 357899999999999999999999999999999999764331
Q ss_pred -----------cccc----------------ccCccccEEEEcHhhHHHHHHHHh
Q 004242 441 -----------EELI----------------ADAHVLPAATLGASAGKAVKKYVN 468 (766)
Q Consensus 441 -----------~~~~----------------~~~~~~p~~~v~~~~g~~l~~~~~ 468 (766)
+... ..-..||+.-|+..|++.|++.|.
T Consensus 107 ~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 107 SFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CCCEECCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccccccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0000 012347899999999999998874
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.94 E-value=0.026 Score=46.79 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=57.6
Q ss_pred CCCCceeeeccCCccceeEEEEEEEEecCCCCeE-EEEEEeCCCceEEEEeCCeEEEeecceEEEEEEEEEEecCCCCC-
Q 004242 666 LNYPSFAVNFKGNVKNMSLEYERSVTNVGTSYCT-YAVKVEEPNGVLVTITPPILSFQKIGEILSYKVTFVSLRGASNE- 743 (766)
Q Consensus 666 ln~ps~~~~~~~~~~~~~~~~~rtvtn~g~~~~t-y~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~- 743 (766)
+..|++.+.-. .+.+++++|+|.|....+ -++.+..|+|=+++.. ...+.+ |++++++++|++.......
T Consensus 6 ~t~p~~~v~pG-----~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~--~~~L~p-G~s~~~~~~Vt~p~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEPG-----QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGS--VEPLMP-GRQAKGQVTITVPAGTTPGR 77 (103)
T ss_dssp EECCCEEECTT-----CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEE--ECCBCT-TCEEEEEEEEECCTTCCCEE
T ss_pred ccCcceeeCCC-----CeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCc--ceeeCC-CCcEEEEEEEECCCCCCCce
Confidence 45677765432 489999999999987654 4677889999887544 445555 9999999999997543332
Q ss_pred eEEEEEEECCcee
Q 004242 744 SFGSLTWVSGKYA 756 (766)
Q Consensus 744 ~~G~~~~~~~~~~ 756 (766)
+.=.++.+++...
T Consensus 78 Y~i~~~a~~~~~~ 90 (103)
T d1w8oa1 78 YRVGATLRTSAGN 90 (103)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEEEeCCcc
Confidence 4444555554433
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0096 Score=56.83 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=68.2
Q ss_pred eeccCCCCceeeeEEccCCCCCCCccccCCCCCCCcccceEEEEecCCCchhhhhHHHHhcCceEEEEecCCCC------
Q 004242 366 SLYSGKGSKQLPLVFGKTAGVSGAEYCINGSLNRKLVKGKIVICQRGLNSRTGKGEQVKLAGGAGMLLLNSDKE------ 439 (766)
Q Consensus 366 ~~~~~~~~~~~~lv~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~g~~~~~~~~~~~~~~Ga~g~i~~~~~~~------ 439 (766)
..|+......-++||..-+...+...-. .....+++|||+|+++|.+.+.+|..+|+..||+|+|++++..+
T Consensus 45 ~ays~~G~v~g~~VyvnyG~~~Df~~L~--~~~gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP~d~~~~g~ 122 (233)
T d3bi1a2 45 SAFSPQGMPEGDLVYVNYARTEDFFKLE--RDMKINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDPADYFAPGV 122 (233)
T ss_dssp EETCCCBCCEECEEECTTCCHHHHHHHH--HTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTC
T ss_pred eeeCCCCceeEEEEEecCCcHHHHHHHH--HhcCCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecChHHccCccc
Confidence 3344444566788886653211110000 00135899999999999999999999999999999999986311
Q ss_pred -------------------------ccccc-----------------ccCccccEEEEcHhhHHHHHHHHh
Q 004242 440 -------------------------GEELI-----------------ADAHVLPAATLGASAGKAVKKYVN 468 (766)
Q Consensus 440 -------------------------~~~~~-----------------~~~~~~p~~~v~~~~g~~l~~~~~ 468 (766)
|+.+. ..-..||+.-|+..|+..|++.|.
T Consensus 123 ~~yP~~~~~p~~~vqrgsv~~~~~~GDplTPg~ps~~~~~r~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 193 (233)
T d3bi1a2 123 KSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMG 193 (233)
T ss_dssp CBTTSSSBCCTTCCCCEECCCCTTCCSTTCTTSCCCTTCCCCCGGGCSSCCSSCEEEECHHHHHHHHTTBC
T ss_pred ccccCCccCCCCceeEeeeeecCCCCCCCCCCCCCCCCCcccChhHhcCCCCCceeccCHHHHHHHHHHcC
Confidence 11110 012467999999999999998875
|